BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00002120
         (1644 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ONK81731.1| uncharacterized protein A4U43_C01F32310 [Asparagu...   357   e-168
ref|XP_020251625.1| chloroplastic group IIA intron splicing faci...   357   e-168
gb|PKA65289.1| Chloroplastic group IIA intron splicing facilitat...   294   e-140
ref|XP_020705251.1| chloroplastic group IIA intron splicing faci...   293   e-138
ref|XP_009418129.1| PREDICTED: chloroplastic group IIA intron sp...   275   e-132
ref|XP_009418130.1| PREDICTED: chloroplastic group IIA intron sp...   275   e-131
ref|XP_021862664.1| chloroplastic group IIA intron splicing faci...   246   e-121
ref|XP_015869865.1| PREDICTED: chloroplastic group IIA intron sp...   254   e-121
ref|XP_021296455.1| LOW QUALITY PROTEIN: chloroplastic group IIA...   261   e-121
gb|ONM04953.1| chloroplast RNA splicing1 [Zea mays]                   249   e-120
gb|ONM04952.1| chloroplast RNA splicing1 [Zea mays]                   249   e-120
ref|XP_018805818.1| PREDICTED: chloroplastic group IIA intron sp...   253   e-119
ref|XP_009598916.1| PREDICTED: chloroplastic group IIA intron sp...   228   e-118
ref|XP_016435862.1| PREDICTED: chloroplastic group IIA intron sp...   228   e-118
ref|XP_009598920.1| PREDICTED: chloroplastic group IIA intron sp...   228   e-118
gb|EOY04143.1| maize chloroplast splicing factor CRS1, putative ...   244   e-116
gb|EOY04144.1| maize chloroplast splicing factor CRS1, putative ...   244   e-116
gb|KVI08864.1| RNA-binding, CRM domain-containing protein [Cynar...   248   e-116
gb|EOY04145.1| maize chloroplast splicing factor CRS1, putative ...   241   e-115
gb|EOY04146.1| maize chloroplast splicing factor CRS1, putative ...   241   e-115

>gb|ONK81731.1| uncharacterized protein A4U43_C01F32310 [Asparagus officinalis]
          Length = 709

 Score =  357 bits (915), Expect(2) = e-168
 Identities = 193/308 (62%), Positives = 219/308 (71%)
 Frame = +2

Query: 698  LTGGVLILRNKFFIILYRGKDFIPGKVASSVHXXXXXXXXXXXXXXXXXXXXXXXXXSLN 877
            LTGGVLILRNKF+IILYRGKDF+PGKVASSVH                         S+N
Sbjct: 405  LTGGVLILRNKFYIILYRGKDFLPGKVASSVHEREIELHDQQLLEEEARAKAIAAFDSIN 464

Query: 878  PIDESVCSTSNIGTFSEFKDIQANYLPLNNGTSTXXXXXXXXXXXXXXXXXXXXXXXXXX 1057
               ES+  T+ +GTFSEFK+IQANYLPLN+ TS+                          
Sbjct: 465  ---ESIQGTTKVGTFSEFKEIQANYLPLNSVTSSEKINIEAEKQNVVKQLKDEEHKLSIL 521

Query: 1058 XXXXXXXXXXXMNLNSSWRPSEQSADRELLTEEERQAFQKIGLKMDEFLLLGRRGVYDGT 1237
                         LNS W PSEQS DRELLT EERQ+FQKIGLKMDEFLLLGRRG+YDGT
Sbjct: 522  KLKIDKAEQELTKLNSLWSPSEQSVDRELLTVEERQSFQKIGLKMDEFLLLGRRGIYDGT 581

Query: 1238 IESIHQHWKHREVVKVITMQKAFQQIAYTARLLEIESGGILVAVEKLRRGHAIIIYRGKN 1417
            IESIHQHWKHREVVKVITMQKA QQ+ YTA+LLEIESGG+LVAVEKLRRGHAIIIYRGKN
Sbjct: 582  IESIHQHWKHREVVKVITMQKALQQVNYTAKLLEIESGGLLVAVEKLRRGHAIIIYRGKN 641

Query: 1418 YSRMLEASPQNLSTKREALQRSIEIQRRGSMKYFAWQKQQTIWELKQILKHLDQKAKQLD 1597
            YSRM + SP+NL TKRE+ QRSIEIQRRGSMKYFA +K+Q I ELKQ L++L+ KAK+LD
Sbjct: 642  YSRMPKISPENLLTKRESYQRSIEIQRRGSMKYFARKKEQKILELKQRLRYLEGKAKELD 701

Query: 1598 TSGVQTQS 1621
            +  VQ ++
Sbjct: 702  SKEVQDEN 709



 Score =  266 bits (681), Expect(2) = e-168
 Identities = 138/214 (64%), Positives = 154/214 (71%), Gaps = 2/214 (0%)
 Frame = +1

Query: 49  LTQIKTGGLVVWTKKDTLVVYR--GNCQFFGKKIQXXXXXXXXXXXXXTLDLRKSYGFTD 222
           + +IKTGGLVV +KKD LVVYR   N + F                              
Sbjct: 226 IVEIKTGGLVVLSKKDALVVYRYQSNAKLF------------------------------ 255

Query: 223 WGVAQKDIEVGHSQITSMDWPSHEEAGSINESLYVREANRLLDGLGPRFIDWWWRTPLPV 402
               QKDIE G  + TSM+W    + GS NESLYVREANRLLD LGPRF+DWW++ PLPV
Sbjct: 256 ----QKDIEFGPPKTTSMNWLLDNDVGSTNESLYVREANRLLDSLGPRFVDWWYKKPLPV 311

Query: 403 DADLLPEVVPEFKPPFRLCPPHERPKLGDVELTYLRKLARPLPTHFALGKNTKLQGVAAA 582
           DADLLPEVVP FKPPFRLCPP ERPKL D ELTYLRK+ARPLPTHFALGKNTKLQG+AAA
Sbjct: 312 DADLLPEVVPGFKPPFRLCPPEERPKLRDDELTYLRKIARPLPTHFALGKNTKLQGLAAA 371

Query: 583 IIKLWEKSLIAKIAIKIGIPHTNNKQMAEELKKL 684
           IIKLWEK LIAKIAIK+GIPHTNN+QM +ELK+L
Sbjct: 372 IIKLWEKCLIAKIAIKVGIPHTNNQQMGQELKRL 405


>ref|XP_020251625.1| chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Asparagus officinalis]
          Length = 607

 Score =  357 bits (915), Expect(2) = e-168
 Identities = 193/308 (62%), Positives = 219/308 (71%)
 Frame = +2

Query: 698  LTGGVLILRNKFFIILYRGKDFIPGKVASSVHXXXXXXXXXXXXXXXXXXXXXXXXXSLN 877
            LTGGVLILRNKF+IILYRGKDF+PGKVASSVH                         S+N
Sbjct: 303  LTGGVLILRNKFYIILYRGKDFLPGKVASSVHEREIELHDQQLLEEEARAKAIAAFDSIN 362

Query: 878  PIDESVCSTSNIGTFSEFKDIQANYLPLNNGTSTXXXXXXXXXXXXXXXXXXXXXXXXXX 1057
               ES+  T+ +GTFSEFK+IQANYLPLN+ TS+                          
Sbjct: 363  ---ESIQGTTKVGTFSEFKEIQANYLPLNSVTSSEKINIEAEKQNVVKQLKDEEHKLSIL 419

Query: 1058 XXXXXXXXXXXMNLNSSWRPSEQSADRELLTEEERQAFQKIGLKMDEFLLLGRRGVYDGT 1237
                         LNS W PSEQS DRELLT EERQ+FQKIGLKMDEFLLLGRRG+YDGT
Sbjct: 420  KLKIDKAEQELTKLNSLWSPSEQSVDRELLTVEERQSFQKIGLKMDEFLLLGRRGIYDGT 479

Query: 1238 IESIHQHWKHREVVKVITMQKAFQQIAYTARLLEIESGGILVAVEKLRRGHAIIIYRGKN 1417
            IESIHQHWKHREVVKVITMQKA QQ+ YTA+LLEIESGG+LVAVEKLRRGHAIIIYRGKN
Sbjct: 480  IESIHQHWKHREVVKVITMQKALQQVNYTAKLLEIESGGLLVAVEKLRRGHAIIIYRGKN 539

Query: 1418 YSRMLEASPQNLSTKREALQRSIEIQRRGSMKYFAWQKQQTIWELKQILKHLDQKAKQLD 1597
            YSRM + SP+NL TKRE+ QRSIEIQRRGSMKYFA +K+Q I ELKQ L++L+ KAK+LD
Sbjct: 540  YSRMPKISPENLLTKRESYQRSIEIQRRGSMKYFARKKEQKILELKQRLRYLEGKAKELD 599

Query: 1598 TSGVQTQS 1621
            +  VQ ++
Sbjct: 600  SKEVQDEN 607



 Score =  266 bits (681), Expect(2) = e-168
 Identities = 138/214 (64%), Positives = 154/214 (71%), Gaps = 2/214 (0%)
 Frame = +1

Query: 49  LTQIKTGGLVVWTKKDTLVVYR--GNCQFFGKKIQXXXXXXXXXXXXXTLDLRKSYGFTD 222
           + +IKTGGLVV +KKD LVVYR   N + F                              
Sbjct: 124 IVEIKTGGLVVLSKKDALVVYRYQSNAKLF------------------------------ 153

Query: 223 WGVAQKDIEVGHSQITSMDWPSHEEAGSINESLYVREANRLLDGLGPRFIDWWWRTPLPV 402
               QKDIE G  + TSM+W    + GS NESLYVREANRLLD LGPRF+DWW++ PLPV
Sbjct: 154 ----QKDIEFGPPKTTSMNWLLDNDVGSTNESLYVREANRLLDSLGPRFVDWWYKKPLPV 209

Query: 403 DADLLPEVVPEFKPPFRLCPPHERPKLGDVELTYLRKLARPLPTHFALGKNTKLQGVAAA 582
           DADLLPEVVP FKPPFRLCPP ERPKL D ELTYLRK+ARPLPTHFALGKNTKLQG+AAA
Sbjct: 210 DADLLPEVVPGFKPPFRLCPPEERPKLRDDELTYLRKIARPLPTHFALGKNTKLQGLAAA 269

Query: 583 IIKLWEKSLIAKIAIKIGIPHTNNKQMAEELKKL 684
           IIKLWEK LIAKIAIK+GIPHTNN+QM +ELK+L
Sbjct: 270 IIKLWEKCLIAKIAIKVGIPHTNNQQMGQELKRL 303


>gb|PKA65289.1| Chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Apostasia shenzhenica]
          Length = 737

 Score =  294 bits (752), Expect(2) = e-140
 Identities = 161/298 (54%), Positives = 196/298 (65%)
 Frame = +2

Query: 698  LTGGVLILRNKFFIILYRGKDFIPGKVASSVHXXXXXXXXXXXXXXXXXXXXXXXXXSLN 877
            LTGGVLILRNKFFIIL+RGKDF+PG+VASSV                          S  
Sbjct: 430  LTGGVLILRNKFFIILFRGKDFLPGRVASSV---LEREAQVTDQQQLEEECRLRAAESFP 486

Query: 878  PIDESVCSTSNIGTFSEFKDIQANYLPLNNGTSTXXXXXXXXXXXXXXXXXXXXXXXXXX 1057
                 V S S IGT +EF+DIQA YLP+N+  S                           
Sbjct: 487  EKQTLVTSASTIGTLTEFEDIQAKYLPVNSIVSQDKVEIEAKTEKLKKSIREHERSLFTL 546

Query: 1058 XXXXXXXXXXXMNLNSSWRPSEQSADRELLTEEERQAFQKIGLKMDEFLLLGRRGVYDGT 1237
                          N +W P E SADRELLTEEER++ +K+GLKMDEFLLLGRRG+YDG 
Sbjct: 547  NVKIERSQKVLSKFNKTWSPLELSADRELLTEEERESLRKVGLKMDEFLLLGRRGIYDGV 606

Query: 1238 IESIHQHWKHREVVKVITMQKAFQQIAYTARLLEIESGGILVAVEKLRRGHAIIIYRGKN 1417
            I SIHQHWK+RE+VKVI+ QKA QQIA+TARLLEIESGGI+VA+EK  RGH IIIYRG+N
Sbjct: 607  IGSIHQHWKYRELVKVISFQKAVQQIAHTARLLEIESGGIVVAIEKQGRGHVIIIYRGRN 666

Query: 1418 YSRMLEASPQNLSTKREALQRSIEIQRRGSMKYFAWQKQQTIWELKQILKHLDQKAKQ 1591
            Y+R L+  P NL TKREALQRSIEIQRRGS+++FA ++QQ++ EL++ L+ L+Q+AK+
Sbjct: 667  YARPLKLVPDNLLTKREALQRSIEIQRRGSLRFFAEERQQSVTELRRKLEDLEQRAKE 724



 Score =  234 bits (597), Expect(2) = e-140
 Identities = 126/212 (59%), Positives = 146/212 (68%)
 Frame = +1

Query: 49  LTQIKTGGLVVWTKKDTLVVYRGNCQFFGKKIQXXXXXXXXXXXXXTLDLRKSYGFTDWG 228
           + + KTGG+VVW KKD +VVYRG     G+KI+                        +  
Sbjct: 245 IVETKTGGIVVWRKKDIIVVYRGINYRMGRKIKSNE---------------------NTS 283

Query: 229 VAQKDIEVGHSQITSMDWPSHEEAGSINESLYVREANRLLDGLGPRFIDWWWRTPLPVDA 408
           + +K  E  +S +T+ D  S   +    ESLYVRE NRLL+GLGPRFIDWWWR PLPVDA
Sbjct: 284 IPEKR-EAENSLLTTNDGKSPANS----ESLYVRETNRLLEGLGPRFIDWWWRKPLPVDA 338

Query: 409 DLLPEVVPEFKPPFRLCPPHERPKLGDVELTYLRKLARPLPTHFALGKNTKLQGVAAAII 588
           DLLPE+VP F  PFRLCPP  R  L D ELTYLRKLARPLPTHFAL KN KL GVA+AII
Sbjct: 339 DLLPEIVPGFMTPFRLCPPDVRSNLSDDELTYLRKLARPLPTHFALSKNKKLHGVASAII 398

Query: 589 KLWEKSLIAKIAIKIGIPHTNNKQMAEELKKL 684
           KLWEKSLIAKIAIK+GIP+TNN+QMA ELK+L
Sbjct: 399 KLWEKSLIAKIAIKVGIPNTNNEQMALELKRL 430


>ref|XP_020705251.1| chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Dendrobium catenatum]
 gb|PKU66813.1| Chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Dendrobium catenatum]
          Length = 763

 Score =  293 bits (751), Expect(2) = e-138
 Identities = 160/302 (52%), Positives = 197/302 (65%)
 Frame = +2

Query: 698  LTGGVLILRNKFFIILYRGKDFIPGKVASSVHXXXXXXXXXXXXXXXXXXXXXXXXXSLN 877
            LTGGVLILRNKF IIL+RGKDF+P +VA SV                          S +
Sbjct: 456  LTGGVLILRNKFLIILFRGKDFLPSRVAGSV---LEREAHVEVQQLLEEKARSKAAESFH 512

Query: 878  PIDESVCSTSNIGTFSEFKDIQANYLPLNNGTSTXXXXXXXXXXXXXXXXXXXXXXXXXX 1057
                   +TS++GT+ EF+DI+ NY+P NN                              
Sbjct: 513  VTIMLETATSSLGTYREFQDIRTNYIPRNNVVCKGELGIAAEMENLKKTLQEQKRSLFIL 572

Query: 1058 XXXXXXXXXXXMNLNSSWRPSEQSADRELLTEEERQAFQKIGLKMDEFLLLGRRGVYDGT 1237
                         LNSSW PSE SADRELLTEEER++ +KIG+KMD+ LLLGRRGV+DG 
Sbjct: 573  KAKIGKSEKVLAKLNSSWSPSELSADRELLTEEERESLRKIGMKMDKILLLGRRGVFDGV 632

Query: 1238 IESIHQHWKHREVVKVITMQKAFQQIAYTARLLEIESGGILVAVEKLRRGHAIIIYRGKN 1417
            I SIHQHWKHREVVKVIT+QKA QQI++TARLLEIESGGI+VAVEK  RGHAIIIYRG+N
Sbjct: 633  IGSIHQHWKHREVVKVITLQKAVQQISHTARLLEIESGGIVVAVEKQGRGHAIIIYRGRN 692

Query: 1418 YSRMLEASPQNLSTKREALQRSIEIQRRGSMKYFAWQKQQTIWELKQILKHLDQKAKQLD 1597
            Y R L  SP++L TKREA QRSIE+QRRGS+++FA +++Q IWEL++ L+ L+QKA+   
Sbjct: 693  YRRPLNLSPEHLLTKREAFQRSIELQRRGSLRFFAKEREQYIWELERKLRELEQKARGFQ 752

Query: 1598 TS 1603
            T+
Sbjct: 753  TA 754



 Score =  230 bits (587), Expect(2) = e-138
 Identities = 122/217 (56%), Positives = 147/217 (67%), Gaps = 5/217 (2%)
 Frame = +1

Query: 49  LTQIKTGGLVVWTKKDTLVVYRGNCQFFGKKI-----QXXXXXXXXXXXXXTLDLRKSYG 213
           + + KTGGLVVW KKD +V YRG+    G K                    +L      G
Sbjct: 240 IVETKTGGLVVWRKKDVIVAYRGDNYQMGTKAFPSPTPPPYVEPSSSKFNSSLSPITFNG 299

Query: 214 FTDWGVAQKDIEVGHSQITSMDWPSHEEAGSINESLYVREANRLLDGLGPRFIDWWWRTP 393
            T+  +   + +V +S    M+  S  + G +N SLY REANRLLDGLGPRFIDWW R P
Sbjct: 300 ITNGAIISVNKQVVNSFSKDMELESQRDHGLVNFSLYEREANRLLDGLGPRFIDWWRRKP 359

Query: 394 LPVDADLLPEVVPEFKPPFRLCPPHERPKLGDVELTYLRKLARPLPTHFALGKNTKLQGV 573
           LPVDADLLPE+VP F  PFR CPP+E  +L + +LTYLRKLARPLPTHFAL KNTKLQG+
Sbjct: 360 LPVDADLLPEIVPGFMTPFRRCPPYEGKRLSNDDLTYLRKLARPLPTHFALSKNTKLQGL 419

Query: 574 AAAIIKLWEKSLIAKIAIKIGIPHTNNKQMAEELKKL 684
           A AI+KLWEKSLIAKIAIK+GI +TN++QMA ELK+L
Sbjct: 420 ACAIMKLWEKSLIAKIAIKVGIQNTNSEQMAWELKRL 456


>ref|XP_009418129.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Musa acuminata subsp.
            malaccensis]
          Length = 769

 Score =  275 bits (704), Expect(2) = e-132
 Identities = 156/293 (53%), Positives = 188/293 (64%)
 Frame = +2

Query: 698  LTGGVLILRNKFFIILYRGKDFIPGKVASSVHXXXXXXXXXXXXXXXXXXXXXXXXXSLN 877
            LTGGVLILRNKFFIILYRGKDF+PG V + +                          SL 
Sbjct: 481  LTGGVLILRNKFFIILYRGKDFLPGGVTNLIDEREAELNEQQLEEEKARTGFTN---SLR 537

Query: 878  PIDESVCSTSNIGTFSEFKDIQANYLPLNNGTSTXXXXXXXXXXXXXXXXXXXXXXXXXX 1057
             +D  + S S +GT+ EF++IQAN++ LNN +                            
Sbjct: 538  AMDNILPSFSIVGTYMEFQEIQANHISLNNLSYRGQIRIEAEREKLKKELREHEHKLFIL 597

Query: 1058 XXXXXXXXXXXMNLNSSWRPSEQSADRELLTEEERQAFQKIGLKMDEFLLLGRRGVYDGT 1237
                         L+ S  PSEQ+AD E+LTEEERQAF+K+GL+M+E +LLGRRG+YDG 
Sbjct: 598  KQKIERSEELLSKLSLSCCPSEQTADLEILTEEERQAFRKVGLEMNEIILLGRRGIYDGV 657

Query: 1238 IESIHQHWKHREVVKVITMQKAFQQIAYTARLLEIESGGILVAVEKLRRGHAIIIYRGKN 1417
              SIHQHWKHREVVKV+T QKAF  I  TARLLE+ESGGILVAVEKLR  HAIIIYRGKN
Sbjct: 658  FGSIHQHWKHREVVKVLTKQKAFHHITCTARLLEVESGGILVAVEKLRTSHAIIIYRGKN 717

Query: 1418 YSRMLEASPQNLSTKREALQRSIEIQRRGSMKYFAWQKQQTIWELKQILKHLD 1576
            Y+R L+ S  NL +KREALQRSIEIQRRGS+KYFA Q+++ IWEL Q L+ L+
Sbjct: 718  YARPLKPS-NNLLSKREALQRSIEIQRRGSLKYFARQREKLIWELTQRLRKLE 769



 Score =  229 bits (583), Expect(2) = e-132
 Identities = 123/224 (54%), Positives = 149/224 (66%), Gaps = 7/224 (3%)
 Frame = +1

Query: 34  RATNLLTQIKTGGLVVWTKKDTLVVYRGNCQFFGKKIQXXXXXXXXXXXXXTLDLRKSYG 213
           RA  ++ Q KTGGLVVW K+D LVVYRG      +                      +  
Sbjct: 273 RAREIVEQTKTGGLVVWCKRDFLVVYRGQKYEMFRNAPSSP---------------NAVN 317

Query: 214 FTDWGVAQKDIEVGHSQITSMDWPSH-EEAG------SINESLYVREANRLLDGLGPRFI 372
             + G+ ++D  +    +  MD      E+G      SI  SLY REA+RLLDGLGPRF+
Sbjct: 318 KVNPGIFEEDSAIVSGSVVKMDGEVQIMESGIQMGDISIEGSLYEREADRLLDGLGPRFV 377

Query: 373 DWWWRTPLPVDADLLPEVVPEFKPPFRLCPPHERPKLGDVELTYLRKLARPLPTHFALGK 552
           DWWW+ PLPVDADLLPEVVP F+PP R+CPP  RPKL D EL YLRKLARPLPTHFALG+
Sbjct: 378 DWWWQKPLPVDADLLPEVVPGFRPPLRMCPPGVRPKLTDDELMYLRKLARPLPTHFALGR 437

Query: 553 NTKLQGVAAAIIKLWEKSLIAKIAIKIGIPHTNNKQMAEELKKL 684
           N KLQG+AA+I KLWEKSLIAKIA+K+GI +TNN+QM+ ELK+L
Sbjct: 438 NRKLQGLAASIRKLWEKSLIAKIAVKVGIQNTNNEQMSLELKRL 481


>ref|XP_009418130.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Musa acuminata subsp.
            malaccensis]
          Length = 768

 Score =  275 bits (704), Expect(2) = e-131
 Identities = 156/293 (53%), Positives = 188/293 (64%)
 Frame = +2

Query: 698  LTGGVLILRNKFFIILYRGKDFIPGKVASSVHXXXXXXXXXXXXXXXXXXXXXXXXXSLN 877
            LTGGVLILRNKFFIILYRGKDF+PG V + +                          SL 
Sbjct: 480  LTGGVLILRNKFFIILYRGKDFLPGGVTNLIDEREAELNEQQLEEEKARTGFTN---SLR 536

Query: 878  PIDESVCSTSNIGTFSEFKDIQANYLPLNNGTSTXXXXXXXXXXXXXXXXXXXXXXXXXX 1057
             +D  + S S +GT+ EF++IQAN++ LNN +                            
Sbjct: 537  AMDNILPSFSIVGTYMEFQEIQANHISLNNLSYRGQIRIEAEREKLKKELREHEHKLFIL 596

Query: 1058 XXXXXXXXXXXMNLNSSWRPSEQSADRELLTEEERQAFQKIGLKMDEFLLLGRRGVYDGT 1237
                         L+ S  PSEQ+AD E+LTEEERQAF+K+GL+M+E +LLGRRG+YDG 
Sbjct: 597  KQKIERSEELLSKLSLSCCPSEQTADLEILTEEERQAFRKVGLEMNEIILLGRRGIYDGV 656

Query: 1238 IESIHQHWKHREVVKVITMQKAFQQIAYTARLLEIESGGILVAVEKLRRGHAIIIYRGKN 1417
              SIHQHWKHREVVKV+T QKAF  I  TARLLE+ESGGILVAVEKLR  HAIIIYRGKN
Sbjct: 657  FGSIHQHWKHREVVKVLTKQKAFHHITCTARLLEVESGGILVAVEKLRTSHAIIIYRGKN 716

Query: 1418 YSRMLEASPQNLSTKREALQRSIEIQRRGSMKYFAWQKQQTIWELKQILKHLD 1576
            Y+R L+ S  NL +KREALQRSIEIQRRGS+KYFA Q+++ IWEL Q L+ L+
Sbjct: 717  YARPLKPS-NNLLSKREALQRSIEIQRRGSLKYFARQREKLIWELTQRLRKLE 768



 Score =  224 bits (572), Expect(2) = e-131
 Identities = 120/219 (54%), Positives = 146/219 (66%), Gaps = 7/219 (3%)
 Frame = +1

Query: 49  LTQIKTGGLVVWTKKDTLVVYRGNCQFFGKKIQXXXXXXXXXXXXXTLDLRKSYGFTDWG 228
           + + KTGGLVVW K+D LVVYRG      +                      +    + G
Sbjct: 277 IVETKTGGLVVWCKRDFLVVYRGQKYEMFRNAPSSP---------------NAVNKVNPG 321

Query: 229 VAQKDIEVGHSQITSMDWPSH-EEAG------SINESLYVREANRLLDGLGPRFIDWWWR 387
           + ++D  +    +  MD      E+G      SI  SLY REA+RLLDGLGPRF+DWWW+
Sbjct: 322 IFEEDSAIVSGSVVKMDGEVQIMESGIQMGDISIEGSLYEREADRLLDGLGPRFVDWWWQ 381

Query: 388 TPLPVDADLLPEVVPEFKPPFRLCPPHERPKLGDVELTYLRKLARPLPTHFALGKNTKLQ 567
            PLPVDADLLPEVVP F+PP R+CPP  RPKL D EL YLRKLARPLPTHFALG+N KLQ
Sbjct: 382 KPLPVDADLLPEVVPGFRPPLRMCPPGVRPKLTDDELMYLRKLARPLPTHFALGRNRKLQ 441

Query: 568 GVAAAIIKLWEKSLIAKIAIKIGIPHTNNKQMAEELKKL 684
           G+AA+I KLWEKSLIAKIA+K+GI +TNN+QM+ ELK+L
Sbjct: 442 GLAASIRKLWEKSLIAKIAVKVGIQNTNNEQMSLELKRL 480


>ref|XP_021862664.1| chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Spinacia oleracea]
          Length = 807

 Score =  246 bits (627), Expect(2) = e-121
 Identities = 139/298 (46%), Positives = 185/298 (62%)
 Frame = +2

Query: 698  LTGGVLILRNKFFIILYRGKDFIPGKVASSVHXXXXXXXXXXXXXXXXXXXXXXXXXSLN 877
            LTGGVL+LRNKFFI+LYRGKDF+PG VA++V                           L+
Sbjct: 512  LTGGVLLLRNKFFIVLYRGKDFLPGNVANAV---IEREIELHQWQLHEEDARLKASGVLD 568

Query: 878  PIDESVCSTSNIGTFSEFKDIQANYLPLNNGTSTXXXXXXXXXXXXXXXXXXXXXXXXXX 1057
              DE+    S +GTFSEF+ IQ     +++  +                           
Sbjct: 569  FNDETSADRSIVGTFSEFQHIQTICRNVHHINNEAAVKIEAEKERLEKELRKQEHKLAIL 628

Query: 1058 XXXXXXXXXXXMNLNSSWRPSEQSADRELLTEEERQAFQKIGLKMDEFLLLGRRGVYDGT 1237
                         L+S+W  SEQ  D+EL+TEEER+ F+KIGLKMD  L+LGRRGV+DG 
Sbjct: 629  KLKIVKAEKDLGKLDSAWMSSEQEPDQELITEEERECFRKIGLKMDNILVLGRRGVFDGV 688

Query: 1238 IESIHQHWKHREVVKVITMQKAFQQIAYTARLLEIESGGILVAVEKLRRGHAIIIYRGKN 1417
            IE +HQHWKHRE+VKVI+MQ++F Q+ YTAR LE ESGGILV +EKL++GHAIIIYRGKN
Sbjct: 689  IEGVHQHWKHRELVKVISMQRSFLQVLYTARSLERESGGILVCIEKLKKGHAIIIYRGKN 748

Query: 1418 YSRMLEASPQNLSTKREALQRSIEIQRRGSMKYFAWQKQQTIWELKQILKHLDQKAKQ 1591
            Y R ++    +L  KR+AL+RS+E+QR GS+K+FA+Q+ + I ELK  LK +D K+++
Sbjct: 749  YKRPIDFG-GDLLNKRKALKRSLEVQRLGSLKFFAYQRDKEIAELK--LKLVDLKSRR 803



 Score =  221 bits (562), Expect(2) = e-121
 Identities = 116/222 (52%), Positives = 144/222 (64%), Gaps = 10/222 (4%)
 Frame = +1

Query: 49  LTQIKTGGLVVWTKKDTLVVYRGNCQFFGKKIQXXXXXXXXXXXXXT----------LDL 198
           + ++KTGGLVVW+KKD LV YRG C +  ++                          LD+
Sbjct: 293 IVEMKTGGLVVWSKKDNLVAYRG-CDYLSRRWSRKGRVSVQPADDGQMPGFTVDEEKLDV 351

Query: 199 RKSYGFTDWGVAQKDIEVGHSQITSMDWPSHEEAGSINESLYVREANRLLDGLGPRFIDW 378
             +Y    + +  KDIE   S    +    +      + SLY RE +RLLDGLGPRF+DW
Sbjct: 352 NLTYSEQSYKLETKDIEKDSSS-DGLLMDRNLGIKLTDRSLYEREGDRLLDGLGPRFVDW 410

Query: 379 WWRTPLPVDADLLPEVVPEFKPPFRLCPPHERPKLGDVELTYLRKLARPLPTHFALGKNT 558
           W+  PLPVD DLLPEVVP FKPPFRLCPP  RP+L D ELTYLRKLARPLP HF LG+N+
Sbjct: 411 WYPKPLPVDGDLLPEVVPGFKPPFRLCPPRVRPQLMDDELTYLRKLARPLPVHFVLGRNS 470

Query: 559 KLQGVAAAIIKLWEKSLIAKIAIKIGIPHTNNKQMAEELKKL 684
           KLQG+A AI+KLWEKS+ AKIA+K G+P+TNN+ M+ ELK L
Sbjct: 471 KLQGLAVAILKLWEKSVFAKIAVKWGVPNTNNEFMSSELKHL 512


>ref|XP_015869865.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Ziziphus jujuba]
          Length = 793

 Score =  254 bits (649), Expect(2) = e-121
 Identities = 140/300 (46%), Positives = 184/300 (61%)
 Frame = +2

Query: 698  LTGGVLILRNKFFIILYRGKDFIPGKVASSVHXXXXXXXXXXXXXXXXXXXXXXXXXSLN 877
            LTGGVL+LRNK+ IILYRGKDF+PG++   +                          +L+
Sbjct: 498  LTGGVLLLRNKYIIILYRGKDFLPGELVDLISEREMELEKFQLHEEHARIEAIE---ALS 554

Query: 878  PIDESVCSTSNIGTFSEFKDIQANYLPLNNGTSTXXXXXXXXXXXXXXXXXXXXXXXXXX 1057
              D    +T  IGT  EF+DIQ  Y  L  G +                           
Sbjct: 555  AADVPKANTGLIGTLLEFQDIQTAYGDLRKGNAGVKLPLEAEKERLERELRKQERKLFIL 614

Query: 1058 XXXXXXXXXXXMNLNSSWRPSEQSADRELLTEEERQAFQKIGLKMDEFLLLGRRGVYDGT 1237
                       + LN++W P+E  AD+E+LTEEER++F++IGLKM   L+LGRRGV+DG 
Sbjct: 615  DNKIKKSAKELLRLNAAWMPAEGDADQEMLTEEERESFRRIGLKMHSCLVLGRRGVFDGV 674

Query: 1238 IESIHQHWKHREVVKVITMQKAFQQIAYTARLLEIESGGILVAVEKLRRGHAIIIYRGKN 1417
            IE +HQHWKHREVVKV+TMQ+ FQQ+ YTA+LLE ESGGILV+V+KL+ GHAIIIYRGKN
Sbjct: 675  IEGLHQHWKHREVVKVMTMQRLFQQVMYTAKLLEAESGGILVSVDKLKEGHAIIIYRGKN 734

Query: 1418 YSRMLEASPQNLSTKREALQRSIEIQRRGSMKYFAWQKQQTIWELKQILKHLDQKAKQLD 1597
            Y R  +    NL TKR+AL RS+E+QR GS+K+FA+Q +Q I +LK  L++L Q  K++D
Sbjct: 735  YQRSSKPISGNLLTKRKALSRSLEMQRIGSLKFFAYQTKQAISDLKLKLENL-QDTKKVD 793



 Score =  211 bits (537), Expect(2) = e-121
 Identities = 118/224 (52%), Positives = 142/224 (63%), Gaps = 12/224 (5%)
 Frame = +1

Query: 49  LTQIKTGGLVVWTKKDTLVVYRGNCQFFG--KKIQXXXXXXXXXXXXXTLDLRKSYGFTD 222
           + + KTGGLVVW KKDTLVVYR  C +    K +Q             +LDL        
Sbjct: 276 IVETKTGGLVVWRKKDTLVVYRW-CDYQSTLKTVQKMYPNVVGSQETTSLDLIPRNLRKG 334

Query: 223 WGVAQKDIEVGHSQI----------TSMDWPSHEEAGSINESLYVREANRLLDGLGPRFI 372
             ++Q    V    I          T +   ++        SLY RE++RLLDGLGPRFI
Sbjct: 335 NAISQVKSYVHEKMIDENAKVELMPTGISLDNNVNCQPTTSSLYERESDRLLDGLGPRFI 394

Query: 373 DWWWRTPLPVDADLLPEVVPEFKPPFRLCPPHERPKLGDVELTYLRKLARPLPTHFALGK 552
           DWW   PLPVDADLLPEV+  F+PP R CPP+ R KL D ELTY RKLA+PLPTHF LG+
Sbjct: 395 DWWMHKPLPVDADLLPEVINGFRPPVRRCPPNTRAKLTDDELTYFRKLAQPLPTHFVLGR 454

Query: 553 NTKLQGVAAAIIKLWEKSLIAKIAIKIGIPHTNNKQMAEELKKL 684
           N KLQG+AAAI+KLWEKS IAKIA+K+GIP+T+N+QMA ELK L
Sbjct: 455 NRKLQGLAAAILKLWEKSPIAKIAVKLGIPNTDNEQMAYELKCL 498


>ref|XP_021296455.1| LOW QUALITY PROTEIN: chloroplastic group IIA intron splicing
            facilitator CRS1, chloroplastic [Herrania umbratica]
          Length = 765

 Score =  261 bits (666), Expect(2) = e-121
 Identities = 142/301 (47%), Positives = 186/301 (61%)
 Frame = +2

Query: 698  LTGGVLILRNKFFIILYRGKDFIPGKVASSVHXXXXXXXXXXXXXXXXXXXXXXXXXSLN 877
            LTGGVL++RNKF IILYRGKDF+P  VA+ V                          +  
Sbjct: 467  LTGGVLLVRNKFLIILYRGKDFLPQGVANLV---VEREMALRRCQLNEEGARVKVAETFQ 523

Query: 878  PIDESVCSTSNIGTFSEFKDIQANYLPLNNGTSTXXXXXXXXXXXXXXXXXXXXXXXXXX 1057
              DE +  TS +GT SEF+DIQ  Y  L   +S                           
Sbjct: 524  VADEPLSKTSTVGTLSEFEDIQTRYGDLKKESSELELQLEAQKENLERELRNQERKLSIL 583

Query: 1058 XXXXXXXXXXXMNLNSSWRPSEQSADRELLTEEERQAFQKIGLKMDEFLLLGRRGVYDGT 1237
                       + LNSSW+P+EQ  D E++TEEER+  +KIGLK++ FL+LGRRGV++G 
Sbjct: 584  NIKIEKSAKELVKLNSSWQPAEQDVDLEIITEEERECLRKIGLKLNSFLVLGRRGVFNGV 643

Query: 1238 IESIHQHWKHREVVKVITMQKAFQQIAYTARLLEIESGGILVAVEKLRRGHAIIIYRGKN 1417
            IE +HQHWKHREVVKVITMQ+ F ++ YTA+LL  ESGGILV+VEKL+ GHA+IIYRGKN
Sbjct: 644  IEGVHQHWKHREVVKVITMQRVFARVIYTAKLLVAESGGILVSVEKLKEGHALIIYRGKN 703

Query: 1418 YSRMLEASPQNLSTKREALQRSIEIQRRGSMKYFAWQKQQTIWELKQILKHLDQKAKQLD 1597
            Y R L+    NL TKREAL+RSIE+QR GS+K+FA+Q++Q + +LK  LK ++ K +++ 
Sbjct: 704  YQRPLKLMTNNLLTKREALRRSIELQRIGSLKFFAYQRRQAVLDLK--LKLVELKDRRVG 761

Query: 1598 T 1600
            T
Sbjct: 762  T 762



 Score =  204 bits (520), Expect(2) = e-121
 Identities = 115/226 (50%), Positives = 137/226 (60%), Gaps = 14/226 (6%)
 Frame = +1

Query: 49  LTQIKTGGLVVWTKKDTLVVYRGNCQFF--------------GKKIQXXXXXXXXXXXXX 186
           + ++KT GLVVW+KKD LVVYRG                   G++I              
Sbjct: 242 IIEMKTRGLVVWSKKDALVVYRGCSHGLTSKISSMKYPRCADGQEISSSTFSHLTSSSNI 301

Query: 187 TLDLRKSYGFTDWGVAQKDIEVGHSQITSMDWPSHEEAGSINESLYVREANRLLDGLGPR 366
            +   K    T      ++     S   ++     E    +  S Y RE +RLL+GLGPR
Sbjct: 302 NMSQEKFNRSTLQSSLYREDREKESMPINIFMKEDENNQPVIGSFYERETDRLLNGLGPR 361

Query: 367 FIDWWWRTPLPVDADLLPEVVPEFKPPFRLCPPHERPKLGDVELTYLRKLARPLPTHFAL 546
           FIDWW R PLP+DADLLPEVVP F+PP RL PP+ RPKL D EL YLRKLA PLP HFAL
Sbjct: 362 FIDWWMRKPLPIDADLLPEVVPGFRPPLRLSPPNTRPKLTDDELKYLRKLAHPLPFHFAL 421

Query: 547 GKNTKLQGVAAAIIKLWEKSLIAKIAIKIGIPHTNNKQMAEELKKL 684
           GKN  LQG+AAAI+KLWEKSLIAKIAIK GI +T+N+QMA ELK L
Sbjct: 422 GKNRNLQGLAAAILKLWEKSLIAKIAIKWGIQNTDNEQMAYELKNL 467


>gb|ONM04953.1| chloroplast RNA splicing1 [Zea mays]
          Length = 777

 Score =  249 bits (636), Expect(2) = e-120
 Identities = 141/299 (47%), Positives = 176/299 (58%)
 Frame = +2

Query: 698  LTGGVLILRNKFFIILYRGKDFIPGKVASSVHXXXXXXXXXXXXXXXXXXXXXXXXXSLN 877
            LTGG +ILRNK FIILYRGKDF+PG VA +V                           + 
Sbjct: 468  LTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQREAQVHDEQVKEEEARLKAVDSLQMVG 527

Query: 878  PIDESVCSTSNIGTFSEFKDIQANYLPLNNGTSTXXXXXXXXXXXXXXXXXXXXXXXXXX 1057
             + E     S++GTF E++   A ++  N   S                           
Sbjct: 528  ELSEE----SSLGTFREYQGFHAKFVHENTENSNTMIELEAEKYRLEKELKDHEWKLSVL 583

Query: 1058 XXXXXXXXXXXMNLNSSWRPSEQSADRELLTEEERQAFQKIGLKMDEFLLLGRRGVYDGT 1237
                         L+SSW PSEQSADRE LTEEE+  F++IG KMD  +LLGRRG++DG 
Sbjct: 584  NKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGV 643

Query: 1238 IESIHQHWKHREVVKVITMQKAFQQIAYTARLLEIESGGILVAVEKLRRGHAIIIYRGKN 1417
            IE IHQHWKH+EVVKVIT Q   +QI Y A LLE+E+GGIL+AVEKL   HAII+YRGKN
Sbjct: 644  IEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILYRGKN 703

Query: 1418 YSRMLEASPQNLSTKREALQRSIEIQRRGSMKYFAWQKQQTIWELKQILKHLDQKAKQL 1594
            Y R  ++S  NL TKREAL+RSIE+QRRGSMKYF  ++Q++I ELK+ L  +  KA Q+
Sbjct: 704  YRRPAKSSFSNLLTKREALRRSIEVQRRGSMKYFVRERQKSILELKRKLVEVCDKANQV 762



 Score =  213 bits (543), Expect(2) = e-120
 Identities = 120/224 (53%), Positives = 142/224 (63%), Gaps = 9/224 (4%)
 Frame = +1

Query: 34  RATNLLTQIKTGGLVVWTKKDTLVVYRGNCQFFGKKIQXXXXXXXXXXXXXTLDLRKS-- 207
           RA  +L +IKTGGLVVWTK D   VYRG+      K                 ++  +  
Sbjct: 229 RAREIL-EIKTGGLVVWTKGDMHFVYRGSKYQQNAKHSHTFLTNVHKGYLVKHNVHTTLL 287

Query: 208 -YG------FTDWGVAQKDIEVGHSQITSMDWPSHEEAGSINESLYVREANRLLDGLGPR 366
            YG        ++G A    +     I        ++   +  +LY RE NRLLD LGPR
Sbjct: 288 KYGSIGPVLINNYGEADDAFQENDQSICGQ-----KDEEPVKGTLYEREVNRLLDTLGPR 342

Query: 367 FIDWWWRTPLPVDADLLPEVVPEFKPPFRLCPPHERPKLGDVELTYLRKLARPLPTHFAL 546
           F+DWWW TPLPVDADLLPE VP FK P+RLCPP  RP L D ELTYLRKLAR LPTHFAL
Sbjct: 343 FVDWWWDTPLPVDADLLPEFVPGFKTPYRLCPPGVRPTLADEELTYLRKLARLLPTHFAL 402

Query: 547 GKNTKLQGVAAAIIKLWEKSLIAKIAIKIGIPHTNNKQMAEELK 678
           G+NT+LQG+AAAI+KLWEKSLIAKIA+KIGI +TNN+QMA  LK
Sbjct: 403 GRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLK 446


>gb|ONM04952.1| chloroplast RNA splicing1 [Zea mays]
          Length = 764

 Score =  249 bits (636), Expect(2) = e-120
 Identities = 141/299 (47%), Positives = 176/299 (58%)
 Frame = +2

Query: 698  LTGGVLILRNKFFIILYRGKDFIPGKVASSVHXXXXXXXXXXXXXXXXXXXXXXXXXSLN 877
            LTGG +ILRNK FIILYRGKDF+PG VA +V                           + 
Sbjct: 455  LTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQREAQVHDEQVKEEEARLKAVDSLQMVG 514

Query: 878  PIDESVCSTSNIGTFSEFKDIQANYLPLNNGTSTXXXXXXXXXXXXXXXXXXXXXXXXXX 1057
             + E     S++GTF E++   A ++  N   S                           
Sbjct: 515  ELSEE----SSLGTFREYQGFHAKFVHENTENSNTMIELEAEKYRLEKELKDHEWKLSVL 570

Query: 1058 XXXXXXXXXXXMNLNSSWRPSEQSADRELLTEEERQAFQKIGLKMDEFLLLGRRGVYDGT 1237
                         L+SSW PSEQSADRE LTEEE+  F++IG KMD  +LLGRRG++DG 
Sbjct: 571  NKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGV 630

Query: 1238 IESIHQHWKHREVVKVITMQKAFQQIAYTARLLEIESGGILVAVEKLRRGHAIIIYRGKN 1417
            IE IHQHWKH+EVVKVIT Q   +QI Y A LLE+E+GGIL+AVEKL   HAII+YRGKN
Sbjct: 631  IEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILYRGKN 690

Query: 1418 YSRMLEASPQNLSTKREALQRSIEIQRRGSMKYFAWQKQQTIWELKQILKHLDQKAKQL 1594
            Y R  ++S  NL TKREAL+RSIE+QRRGSMKYF  ++Q++I ELK+ L  +  KA Q+
Sbjct: 691  YRRPAKSSFSNLLTKREALRRSIEVQRRGSMKYFVRERQKSILELKRKLVEVCDKANQV 749



 Score =  213 bits (543), Expect(2) = e-120
 Identities = 120/224 (53%), Positives = 142/224 (63%), Gaps = 9/224 (4%)
 Frame = +1

Query: 34  RATNLLTQIKTGGLVVWTKKDTLVVYRGNCQFFGKKIQXXXXXXXXXXXXXTLDLRKS-- 207
           RA  +L +IKTGGLVVWTK D   VYRG+      K                 ++  +  
Sbjct: 229 RAREIL-EIKTGGLVVWTKGDMHFVYRGSKYQQNAKHSHTFLTNVHKGYLVKHNVHTTLL 287

Query: 208 -YG------FTDWGVAQKDIEVGHSQITSMDWPSHEEAGSINESLYVREANRLLDGLGPR 366
            YG        ++G A    +     I        ++   +  +LY RE NRLLD LGPR
Sbjct: 288 KYGSIGPVLINNYGEADDAFQENDQSICGQ-----KDEEPVKGTLYEREVNRLLDTLGPR 342

Query: 367 FIDWWWRTPLPVDADLLPEVVPEFKPPFRLCPPHERPKLGDVELTYLRKLARPLPTHFAL 546
           F+DWWW TPLPVDADLLPE VP FK P+RLCPP  RP L D ELTYLRKLAR LPTHFAL
Sbjct: 343 FVDWWWDTPLPVDADLLPEFVPGFKTPYRLCPPGVRPTLADEELTYLRKLARLLPTHFAL 402

Query: 547 GKNTKLQGVAAAIIKLWEKSLIAKIAIKIGIPHTNNKQMAEELK 678
           G+NT+LQG+AAAI+KLWEKSLIAKIA+KIGI +TNN+QMA  LK
Sbjct: 403 GRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLK 446


>ref|XP_018805818.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Juglans regia]
          Length = 772

 Score =  253 bits (647), Expect(2) = e-119
 Identities = 140/294 (47%), Positives = 175/294 (59%)
 Frame = +2

Query: 698  LTGGVLILRNKFFIILYRGKDFIPGKVASSVHXXXXXXXXXXXXXXXXXXXXXXXXXSLN 877
            LTGGVL+LRNKF IILYRGKDF+P +VA+ +                            N
Sbjct: 474  LTGGVLLLRNKFLIILYRGKDFLPHRVANLIAERETELKKYQLHEEGARVKAIEAVCMDN 533

Query: 878  PIDESVCSTSNIGTFSEFKDIQANYLPLNNGTSTXXXXXXXXXXXXXXXXXXXXXXXXXX 1057
               E+   TS+ GT SE K IQ  +  L  G +                           
Sbjct: 534  GSTEN---TSSSGTLSESKYIQTEFSDLEIGNTEVDIKLEAEKQRLERELREQERKLFIL 590

Query: 1058 XXXXXXXXXXXMNLNSSWRPSEQSADRELLTEEERQAFQKIGLKMDEFLLLGRRGVYDGT 1237
                         L   W P+E  ADRE++TEEER+ FQKIGLKMD  L LGRRGV+DG 
Sbjct: 591  NIKIDKSTKKLSKLTGGWAPTEMDADREMITEEERECFQKIGLKMDRCLELGRRGVFDGV 650

Query: 1238 IESIHQHWKHREVVKVITMQKAFQQIAYTARLLEIESGGILVAVEKLRRGHAIIIYRGKN 1417
            IE +HQHWK+REVVKVIT Q+ FQQ+ YTA+ LE ESGG+LV+V+KL+ GHAII+YRGKN
Sbjct: 651  IEGLHQHWKYREVVKVITKQRLFQQVVYTAKFLEAESGGVLVSVKKLKEGHAIILYRGKN 710

Query: 1418 YSRMLEASPQNLSTKREALQRSIEIQRRGSMKYFAWQKQQTIWELKQILKHLDQ 1579
            Y R L+  P+NL TKREAL +S+E+QR GS+K+FA+Q+QQ I +LK  L+ L Q
Sbjct: 711  YRRPLKRVPENLLTKREALHKSLEMQRIGSLKFFAYQRQQAIMDLKCKLEDLQQ 764



 Score =  207 bits (527), Expect(2) = e-119
 Identities = 117/231 (50%), Positives = 144/231 (62%), Gaps = 19/231 (8%)
 Frame = +1

Query: 49  LTQIKTGGLVVWTKKDTLVVYRG-NCQFFGKKIQXXXXXXXXXXXXXTLDLRKSYGFTDW 225
           + +IKTGGLVVW++KDTLVVYRG + Q   K I                +     G   W
Sbjct: 249 IVEIKTGGLVVWSQKDTLVVYRGCSHQPTSKNILKTRARLAGSQAAPYYET----GLPKW 304

Query: 226 GVAQKDIEVGHSQITSMDW-------------PSHEEAGSINE-----SLYVREANRLLD 351
                +I + +S    +D              P     G +N      SLYVRE  RLLD
Sbjct: 305 E-RNYEISLPNSNENGVDEKMCRSESEGANLPPGISSKGDLNYQPVSGSLYVRETERLLD 363

Query: 352 GLGPRFIDWWWRTPLPVDADLLPEVVPEFKPPFRLCPPHERPKLGDVELTYLRKLARPLP 531
           GLGPR++DWW   PLPVDADLLPEVVP ++PPFRLCPP  R KL + ELTYLRKLA PLP
Sbjct: 364 GLGPRYLDWWMDKPLPVDADLLPEVVPGYRPPFRLCPPRARAKLTNDELTYLRKLAHPLP 423

Query: 532 THFALGKNTKLQGVAAAIIKLWEKSLIAKIAIKIGIPHTNNKQMAEELKKL 684
           THF LGKN KLQG++A+I+KLWEKSLI KI++K G+P+ NN+++A ELK L
Sbjct: 424 THFVLGKNRKLQGLSASILKLWEKSLIVKISLKWGVPNMNNEEVALELKHL 474


>ref|XP_009598916.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Nicotiana tomentosiformis]
 ref|XP_009598917.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Nicotiana tomentosiformis]
          Length = 815

 Score =  228 bits (582), Expect(2) = e-118
 Identities = 137/299 (45%), Positives = 173/299 (57%)
 Frame = +2

Query: 698  LTGGVLILRNKFFIILYRGKDFIPGKVASSVHXXXXXXXXXXXXXXXXXXXXXXXXXSLN 877
            LTGGVL+LRNKFFIILYRGKDF+P +VAS V                          +L 
Sbjct: 516  LTGGVLLLRNKFFIILYRGKDFLPSQVASLV---AEREVELRRCQLEEEAARFKAIETLP 572

Query: 878  PIDESVCSTSNIGTFSEFKDIQANYLPLNNGTSTXXXXXXXXXXXXXXXXXXXXXXXXXX 1057
                   S SN+GT SEF+ I     P    + T                          
Sbjct: 573  ITTGESMSISNVGTLSEFQTIAE---PGREKSETEVQLVAEKERLEKELRDEQHSLYILK 629

Query: 1058 XXXXXXXXXXXMNLNSSWRPSEQSADRELLTEEERQAFQKIGLKMDEFLLLGRRGVYDGT 1237
                         L+++WRP++   D+E+LT+EER++ ++IGLKMD  L+LGRRGV+DG 
Sbjct: 630  KKIEKSSIALG-KLDAAWRPAKPDVDKEILTQEERRSLRQIGLKMDRSLVLGRRGVFDGV 688

Query: 1238 IESIHQHWKHREVVKVITMQKAFQQIAYTARLLEIESGGILVAVEKLRRGHAIIIYRGKN 1417
            +  +HQHWKHREVVKVITMQK F Q+ +TA LLE ESGGILV+V+KL+ GHAIIIYRGKN
Sbjct: 689  LAGLHQHWKHREVVKVITMQKIFSQVIHTANLLEAESGGILVSVDKLKEGHAIIIYRGKN 748

Query: 1418 YSRMLEASPQNLSTKREALQRSIEIQRRGSMKYFAWQKQQTIWELKQILKHLDQKAKQL 1594
            Y R  E  PQNL  KR AL RS+E+QR GS+K++A Q +Q I +LK  L     K  Q+
Sbjct: 749  YRRP-ELVPQNLLNKRLALSRSLEMQRLGSLKFYANQTEQAISDLKCKLVEYTVKIGQM 806



 Score =  228 bits (581), Expect(2) = e-118
 Identities = 125/231 (54%), Positives = 152/231 (65%), Gaps = 4/231 (1%)
 Frame = +1

Query: 4   KFLLYPVGRMRATNLLTQIKTGGLVVWTKKDTLVVYRGNCQFFGKKI----QXXXXXXXX 171
           KF L     M     + ++KTGG VVW KK+ LVVYRG C +  ++     +        
Sbjct: 293 KFDLPLCRNMDRAQEIIEMKTGGFVVWRKKNALVVYRG-CDYTLRQKDDPKRHHDFLRSQ 351

Query: 172 XXXXXTLDLRKSYGFTDWGVAQKDIEVGHSQITSMDWPSHEEAGSINESLYVREANRLLD 351
                T   +K+  F+    ++  ++V   +       S E++ +INESLY REANRLLD
Sbjct: 352 QNNSSTYTFKKTSAFSSSNSSRSSVDVISGE------SSEEDSLTINESLYEREANRLLD 405

Query: 352 GLGPRFIDWWWRTPLPVDADLLPEVVPEFKPPFRLCPPHERPKLGDVELTYLRKLARPLP 531
            LGPR++DWWW  PLPVDADLLPEVVP FKPPFRLCPP  R KL D ELT+LRKLAR LP
Sbjct: 406 DLGPRYVDWWWPKPLPVDADLLPEVVPGFKPPFRLCPPRSRSKLTDDELTHLRKLARSLP 465

Query: 532 THFALGKNTKLQGVAAAIIKLWEKSLIAKIAIKIGIPHTNNKQMAEELKKL 684
           THF LG+N KLQG+AAAIIKLWEK  IAKIA+K GIP+TNN+ MA ELK L
Sbjct: 466 THFVLGRNRKLQGLAAAIIKLWEKCHIAKIALKWGIPNTNNELMANELKYL 516


>ref|XP_016435862.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like, partial [Nicotiana tabacum]
          Length = 751

 Score =  228 bits (582), Expect(2) = e-118
 Identities = 137/299 (45%), Positives = 173/299 (57%)
 Frame = +2

Query: 698  LTGGVLILRNKFFIILYRGKDFIPGKVASSVHXXXXXXXXXXXXXXXXXXXXXXXXXSLN 877
            LTGGVL+LRNKFFIILYRGKDF+P +VAS V                          +L 
Sbjct: 452  LTGGVLLLRNKFFIILYRGKDFLPSQVASLV---AEREVELRRCQLEEEAARFKAIETLP 508

Query: 878  PIDESVCSTSNIGTFSEFKDIQANYLPLNNGTSTXXXXXXXXXXXXXXXXXXXXXXXXXX 1057
                   S SN+GT SEF+ I     P    + T                          
Sbjct: 509  ITTGESMSISNVGTLSEFQTIAE---PGREKSETEVQLVAEKERLEKELRDEQHSLYILK 565

Query: 1058 XXXXXXXXXXXMNLNSSWRPSEQSADRELLTEEERQAFQKIGLKMDEFLLLGRRGVYDGT 1237
                         L+++WRP++   D+E+LT+EER++ ++IGLKMD  L+LGRRGV+DG 
Sbjct: 566  KKIEKSSIALG-KLDAAWRPAKPDVDKEILTQEERRSLRQIGLKMDRSLVLGRRGVFDGV 624

Query: 1238 IESIHQHWKHREVVKVITMQKAFQQIAYTARLLEIESGGILVAVEKLRRGHAIIIYRGKN 1417
            +  +HQHWKHREVVKVITMQK F Q+ +TA LLE ESGGILV+V+KL+ GHAIIIYRGKN
Sbjct: 625  LAGLHQHWKHREVVKVITMQKIFSQVIHTANLLEAESGGILVSVDKLKEGHAIIIYRGKN 684

Query: 1418 YSRMLEASPQNLSTKREALQRSIEIQRRGSMKYFAWQKQQTIWELKQILKHLDQKAKQL 1594
            Y R  E  PQNL  KR AL RS+E+QR GS+K++A Q +Q I +LK  L     K  Q+
Sbjct: 685  YRRP-ELVPQNLLNKRLALSRSLEMQRLGSLKFYANQTEQAISDLKCKLVEYTVKIGQM 742



 Score =  228 bits (581), Expect(2) = e-118
 Identities = 125/231 (54%), Positives = 152/231 (65%), Gaps = 4/231 (1%)
 Frame = +1

Query: 4   KFLLYPVGRMRATNLLTQIKTGGLVVWTKKDTLVVYRGNCQFFGKKI----QXXXXXXXX 171
           KF L     M     + ++KTGG VVW KK+ LVVYRG C +  ++     +        
Sbjct: 229 KFDLPLCRNMDRAQEIIEMKTGGFVVWRKKNALVVYRG-CDYTLRQKDDPKRHHDFLRSQ 287

Query: 172 XXXXXTLDLRKSYGFTDWGVAQKDIEVGHSQITSMDWPSHEEAGSINESLYVREANRLLD 351
                T   +K+  F+    ++  ++V   +       S E++ +INESLY REANRLLD
Sbjct: 288 QNNSSTYTFKKTSAFSSSNSSRSSVDVISGE------SSEEDSLTINESLYEREANRLLD 341

Query: 352 GLGPRFIDWWWRTPLPVDADLLPEVVPEFKPPFRLCPPHERPKLGDVELTYLRKLARPLP 531
            LGPR++DWWW  PLPVDADLLPEVVP FKPPFRLCPP  R KL D ELT+LRKLAR LP
Sbjct: 342 DLGPRYVDWWWPKPLPVDADLLPEVVPGFKPPFRLCPPRSRSKLTDDELTHLRKLARSLP 401

Query: 532 THFALGKNTKLQGVAAAIIKLWEKSLIAKIAIKIGIPHTNNKQMAEELKKL 684
           THF LG+N KLQG+AAAIIKLWEK  IAKIA+K GIP+TNN+ MA ELK L
Sbjct: 402 THFVLGRNRKLQGLAAAIIKLWEKCHIAKIALKWGIPNTNNELMANELKYL 452


>ref|XP_009598920.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic isoform X3 [Nicotiana
           tomentosiformis]
          Length = 795

 Score =  228 bits (581), Expect(2) = e-118
 Identities = 125/231 (54%), Positives = 152/231 (65%), Gaps = 4/231 (1%)
 Frame = +1

Query: 4   KFLLYPVGRMRATNLLTQIKTGGLVVWTKKDTLVVYRGNCQFFGKKI----QXXXXXXXX 171
           KF L     M     + ++KTGG VVW KK+ LVVYRG C +  ++     +        
Sbjct: 293 KFDLPLCRNMDRAQEIIEMKTGGFVVWRKKNALVVYRG-CDYTLRQKDDPKRHHDFLRSQ 351

Query: 172 XXXXXTLDLRKSYGFTDWGVAQKDIEVGHSQITSMDWPSHEEAGSINESLYVREANRLLD 351
                T   +K+  F+    ++  ++V   +       S E++ +INESLY REANRLLD
Sbjct: 352 QNNSSTYTFKKTSAFSSSNSSRSSVDVISGE------SSEEDSLTINESLYEREANRLLD 405

Query: 352 GLGPRFIDWWWRTPLPVDADLLPEVVPEFKPPFRLCPPHERPKLGDVELTYLRKLARPLP 531
            LGPR++DWWW  PLPVDADLLPEVVP FKPPFRLCPP  R KL D ELT+LRKLAR LP
Sbjct: 406 DLGPRYVDWWWPKPLPVDADLLPEVVPGFKPPFRLCPPRSRSKLTDDELTHLRKLARSLP 465

Query: 532 THFALGKNTKLQGVAAAIIKLWEKSLIAKIAIKIGIPHTNNKQMAEELKKL 684
           THF LG+N KLQG+AAAIIKLWEK  IAKIA+K GIP+TNN+ MA ELK L
Sbjct: 466 THFVLGRNRKLQGLAAAIIKLWEKCHIAKIALKWGIPNTNNELMANELKYL 516



 Score =  228 bits (581), Expect(2) = e-118
 Identities = 134/286 (46%), Positives = 169/286 (59%)
 Frame = +2

Query: 698  LTGGVLILRNKFFIILYRGKDFIPGKVASSVHXXXXXXXXXXXXXXXXXXXXXXXXXSLN 877
            LTGGVL+LRNKFFIILYRGKDF+P +VAS V                          +L 
Sbjct: 516  LTGGVLLLRNKFFIILYRGKDFLPSQVASLV---AEREVELRRCQLEEEAARFKAIETLP 572

Query: 878  PIDESVCSTSNIGTFSEFKDIQANYLPLNNGTSTXXXXXXXXXXXXXXXXXXXXXXXXXX 1057
                   S SN+GT SEF+ I     P    + T                          
Sbjct: 573  ITTGESMSISNVGTLSEFQTIAE---PGREKSETEVQLVAEKERLEKELRDEQHSLYILK 629

Query: 1058 XXXXXXXXXXXMNLNSSWRPSEQSADRELLTEEERQAFQKIGLKMDEFLLLGRRGVYDGT 1237
                         L+++WRP++   D+E+LT+EER++ ++IGLKMD  L+LGRRGV+DG 
Sbjct: 630  KKIEKSSIALG-KLDAAWRPAKPDVDKEILTQEERRSLRQIGLKMDRSLVLGRRGVFDGV 688

Query: 1238 IESIHQHWKHREVVKVITMQKAFQQIAYTARLLEIESGGILVAVEKLRRGHAIIIYRGKN 1417
            +  +HQHWKHREVVKVITMQK F Q+ +TA LLE ESGGILV+V+KL+ GHAIIIYRGKN
Sbjct: 689  LAGLHQHWKHREVVKVITMQKIFSQVIHTANLLEAESGGILVSVDKLKEGHAIIIYRGKN 748

Query: 1418 YSRMLEASPQNLSTKREALQRSIEIQRRGSMKYFAWQKQQTIWELK 1555
            Y R  E  PQNL  KR AL RS+E+QR GS+K++A Q +Q I +LK
Sbjct: 749  YRRP-ELVPQNLLNKRLALSRSLEMQRLGSLKFYANQTEQAISDLK 793


>gb|EOY04143.1| maize chloroplast splicing factor CRS1, putative isoform 1 [Theobroma
            cacao]
          Length = 818

 Score =  244 bits (624), Expect(2) = e-116
 Identities = 136/309 (44%), Positives = 185/309 (59%)
 Frame = +2

Query: 698  LTGGVLILRNKFFIILYRGKDFIPGKVASSVHXXXXXXXXXXXXXXXXXXXXXXXXXSLN 877
            LTGGVL++RNKF +ILYRGKDF+P  VA+ V                          +  
Sbjct: 506  LTGGVLLVRNKFLLILYRGKDFLPQGVANLV---VEREMALRRCQLNEEGARVKVAETCQ 562

Query: 878  PIDESVCSTSNIGTFSEFKDIQANYLPLNNGTSTXXXXXXXXXXXXXXXXXXXXXXXXXX 1057
              DE +  TS +GT SEF+DIQ  +  L   +S                           
Sbjct: 563  VADEPLAKTSTVGTLSEFEDIQTRFGDLKKESSELELQLEAQKENLERELRNQERKLSIL 622

Query: 1058 XXXXXXXXXXXMNLNSSWRPSEQSADRELLTEEERQAFQKIGLKMDEFLLLGRRGVYDGT 1237
                         L SS +P+EQ  D E++TEEER+  +KIGLK++ FL+LGRRGV++G 
Sbjct: 623  NIKIEKSAKELAKLKSSRQPAEQDVDLEIITEEERECLRKIGLKLNSFLVLGRRGVFNGV 682

Query: 1238 IESIHQHWKHREVVKVITMQKAFQQIAYTARLLEIESGGILVAVEKLRRGHAIIIYRGKN 1417
            IE ++QHWKHREVVKVITMQ+ F ++ YTA+ L  E+GGILV+VEKL+ GHA+IIYRGKN
Sbjct: 683  IEGVYQHWKHREVVKVITMQRVFARVIYTAKFLVAETGGILVSVEKLKEGHALIIYRGKN 742

Query: 1418 YSRMLEASPQNLSTKREALQRSIEIQRRGSMKYFAWQKQQTIWELKQILKHLDQKAKQLD 1597
            Y R L+    NL TKREAL++SIE+QR GS+K+FA+Q++Q I +LK  LK  + K +++ 
Sbjct: 743  YRRPLKLMTNNLLTKREALRQSIELQRIGSLKFFAYQRRQAILDLK--LKLAELKDRRVG 800

Query: 1598 TSGVQTQSK 1624
            TS  + + +
Sbjct: 801  TSQRENEER 809



 Score =  206 bits (524), Expect(2) = e-116
 Identities = 116/226 (51%), Positives = 136/226 (60%), Gaps = 14/226 (6%)
 Frame = +1

Query: 49  LTQIKTGGLVVWTKKDTLVVYRGNCQFF--------------GKKIQXXXXXXXXXXXXX 186
           + ++KT GLVVW KKD LVVYRG                   G++I              
Sbjct: 281 IIEMKTRGLVVWGKKDALVVYRGCSHGLTSKISSMKYPRCADGQEISSSTFSHLTSSNNI 340

Query: 187 TLDLRKSYGFTDWGVAQKDIEVGHSQITSMDWPSHEEAGSINESLYVREANRLLDGLGPR 366
            + L K  G T      ++     S   ++     E    +  SLY RE +RLLDGLGPR
Sbjct: 341 NMSLEKFNGSTLQSGLYREDREKESMPINIFMKEDENNQPVIGSLYERETDRLLDGLGPR 400

Query: 367 FIDWWWRTPLPVDADLLPEVVPEFKPPFRLCPPHERPKLGDVELTYLRKLARPLPTHFAL 546
           FIDWW R PLP+DADLLPE VP F+PP RL PP+ RP L D EL YLRKL  PLP HFAL
Sbjct: 401 FIDWWMRKPLPIDADLLPEEVPGFRPPLRLSPPNTRPNLTDDELKYLRKLTHPLPFHFAL 460

Query: 547 GKNTKLQGVAAAIIKLWEKSLIAKIAIKIGIPHTNNKQMAEELKKL 684
           GKN  LQG+AAAI+KLWEKSLIAKIAIK GI +T+N+QMA ELK L
Sbjct: 461 GKNRNLQGLAAAILKLWEKSLIAKIAIKWGIQNTDNEQMAYELKNL 506


>gb|EOY04144.1| maize chloroplast splicing factor CRS1, putative isoform 2 [Theobroma
            cacao]
          Length = 804

 Score =  244 bits (623), Expect(2) = e-116
 Identities = 136/302 (45%), Positives = 182/302 (60%)
 Frame = +2

Query: 698  LTGGVLILRNKFFIILYRGKDFIPGKVASSVHXXXXXXXXXXXXXXXXXXXXXXXXXSLN 877
            LTGGVL++RNKF +ILYRGKDF+P  VA+ V                          +  
Sbjct: 506  LTGGVLLVRNKFLLILYRGKDFLPQGVANLV---VEREMALRRCQLNEEGARVKVAETCQ 562

Query: 878  PIDESVCSTSNIGTFSEFKDIQANYLPLNNGTSTXXXXXXXXXXXXXXXXXXXXXXXXXX 1057
              DE +  TS +GT SEF+DIQ  +  L   +S                           
Sbjct: 563  VADEPLAKTSTVGTLSEFEDIQTRFGDLKKESSELELQLEAQKENLERELRNQERKLSIL 622

Query: 1058 XXXXXXXXXXXMNLNSSWRPSEQSADRELLTEEERQAFQKIGLKMDEFLLLGRRGVYDGT 1237
                         L SS +P+EQ  D E++TEEER+  +KIGLK++ FL+LGRRGV++G 
Sbjct: 623  NIKIEKSAKELAKLKSSRQPAEQDVDLEIITEEERECLRKIGLKLNSFLVLGRRGVFNGV 682

Query: 1238 IESIHQHWKHREVVKVITMQKAFQQIAYTARLLEIESGGILVAVEKLRRGHAIIIYRGKN 1417
            IE ++QHWKHREVVKVITMQ+ F ++ YTA+ L  E+GGILV+VEKL+ GHA+IIYRGKN
Sbjct: 683  IEGVYQHWKHREVVKVITMQRVFARVIYTAKFLVAETGGILVSVEKLKEGHALIIYRGKN 742

Query: 1418 YSRMLEASPQNLSTKREALQRSIEIQRRGSMKYFAWQKQQTIWELKQILKHLDQKAKQLD 1597
            Y R L+    NL TKREAL++SIE+QR GS+K+FA+Q++Q I +LK  LK  + K +++ 
Sbjct: 743  YRRPLKLMTNNLLTKREALRQSIELQRIGSLKFFAYQRRQAILDLK--LKLAELKDRRVG 800

Query: 1598 TS 1603
            TS
Sbjct: 801  TS 802



 Score =  206 bits (524), Expect(2) = e-116
 Identities = 116/226 (51%), Positives = 136/226 (60%), Gaps = 14/226 (6%)
 Frame = +1

Query: 49  LTQIKTGGLVVWTKKDTLVVYRGNCQFF--------------GKKIQXXXXXXXXXXXXX 186
           + ++KT GLVVW KKD LVVYRG                   G++I              
Sbjct: 281 IIEMKTRGLVVWGKKDALVVYRGCSHGLTSKISSMKYPRCADGQEISSSTFSHLTSSNNI 340

Query: 187 TLDLRKSYGFTDWGVAQKDIEVGHSQITSMDWPSHEEAGSINESLYVREANRLLDGLGPR 366
            + L K  G T      ++     S   ++     E    +  SLY RE +RLLDGLGPR
Sbjct: 341 NMSLEKFNGSTLQSGLYREDREKESMPINIFMKEDENNQPVIGSLYERETDRLLDGLGPR 400

Query: 367 FIDWWWRTPLPVDADLLPEVVPEFKPPFRLCPPHERPKLGDVELTYLRKLARPLPTHFAL 546
           FIDWW R PLP+DADLLPE VP F+PP RL PP+ RP L D EL YLRKL  PLP HFAL
Sbjct: 401 FIDWWMRKPLPIDADLLPEEVPGFRPPLRLSPPNTRPNLTDDELKYLRKLTHPLPFHFAL 460

Query: 547 GKNTKLQGVAAAIIKLWEKSLIAKIAIKIGIPHTNNKQMAEELKKL 684
           GKN  LQG+AAAI+KLWEKSLIAKIAIK GI +T+N+QMA ELK L
Sbjct: 461 GKNRNLQGLAAAILKLWEKSLIAKIAIKWGIQNTDNEQMAYELKNL 506


>gb|KVI08864.1| RNA-binding, CRM domain-containing protein [Cynara cardunculus var.
            scolymus]
          Length = 778

 Score =  248 bits (632), Expect(2) = e-116
 Identities = 139/296 (46%), Positives = 180/296 (60%), Gaps = 3/296 (1%)
 Frame = +2

Query: 698  LTGGVLILRNKFFIILYRGKDFIPGKVASSVHXXXXXXXXXXXXXXXXXXXXXXXXXSLN 877
            LTGGVL+LRNKF+IILYRGKDF+P  VA  V                          + +
Sbjct: 480  LTGGVLLLRNKFYIILYRGKDFLPPGVADLV---ADREIALKSFQLQEEAARTHTIETFH 536

Query: 878  PIDESVCSTSNIGTFSEFKDIQANYLPLNNGTSTXXXXXXXXXXXXXXXXXXXXXXXXXX 1057
             IDE +  +S +GT  EF+ IQ+ +      TS                           
Sbjct: 537  YIDEPLSDSSTVGTLQEFQSIQSKHQGFKPRTSEAEVQVETEKLKLEKEIRNQERKYFIL 596

Query: 1058 XXXXXXXXXXXMNLNSSWRPSEQSADRELLTEEERQAFQKIGLKMDEFLLLGRRGVYDGT 1237
                         LNSSW P E + DRE++T EER+  +K+GLKMD  L+LGRRGV+DG 
Sbjct: 597  KMKIDKVSKELEKLNSSWEPIEPNEDREIITSEERECLRKMGLKMDSTLVLGRRGVFDGV 656

Query: 1238 IESIHQHWKHREVVKVITMQKAFQQIAYTARLLEIESGGILVAVEKLRRGHAIIIYRGKN 1417
            IE +HQHWKHRE+VKVITMQ+AF +I YTA+ LE ESGGILV++EKL+ G+AII+YRGKN
Sbjct: 657  IEGLHQHWKHREIVKVITMQRAFSRILYTAQSLEAESGGILVSIEKLKLGYAIIMYRGKN 716

Query: 1418 YSRMLEASPQNLSTKREALQRSIEIQRRGSMKYFAWQKQQTIWELK---QILKHLD 1576
            Y R L+ S +NL +KREAL++S+E+QR GS+K+FA  +QQ I+ELK    +LKH D
Sbjct: 717  YKRPLKFS-RNLLSKREALRKSLEMQRIGSLKFFANMRQQAIYELKCKLDVLKHRD 771



 Score =  201 bits (510), Expect(2) = e-116
 Identities = 110/216 (50%), Positives = 135/216 (62%), Gaps = 4/216 (1%)
 Frame = +1

Query: 49  LTQIKTGGLVVWTKKDTLVVYRGNCQFFGKKIQXXXXXXXXXXXXXTLD----LRKSYGF 216
           + +IKTGG VVW+KKDTL +YRG C                      L     LR  +G 
Sbjct: 278 IVEIKTGGFVVWSKKDTLAIYRG-CNHKEMHTSFDGGQELNSCKTSYLGGVPFLRDKFG- 335

Query: 217 TDWGVAQKDIEVGHSQITSMDWPSHEEAGSINESLYVREANRLLDGLGPRFIDWWWRTPL 396
                    ++  +  +   D    EE   +  SLY REA+RLLDGLGPRF+DWW   PL
Sbjct: 336 ---------MDSTYQMVAGND--GKEETMVVQGSLYEREADRLLDGLGPRFVDWWMPKPL 384

Query: 397 PVDADLLPEVVPEFKPPFRLCPPHERPKLGDVELTYLRKLARPLPTHFALGKNTKLQGVA 576
           P+DAD+LPE+VP +KPP R CP + R KL D ELT+LR+LA PLPTHF LG+N  LQG+A
Sbjct: 385 PIDADMLPELVPGYKPPSRRCPMNARSKLTDDELTHLRRLAYPLPTHFVLGRNRNLQGLA 444

Query: 577 AAIIKLWEKSLIAKIAIKIGIPHTNNKQMAEELKKL 684
           AAI+KLWEK  IAKIA+K GIP+T N+QMA ELK L
Sbjct: 445 AAILKLWEKCHIAKIAVKWGIPNTRNEQMASELKVL 480


>gb|EOY04145.1| maize chloroplast splicing factor CRS1, putative isoform 3 [Theobroma
            cacao]
          Length = 788

 Score =  241 bits (616), Expect(2) = e-115
 Identities = 131/286 (45%), Positives = 173/286 (60%)
 Frame = +2

Query: 698  LTGGVLILRNKFFIILYRGKDFIPGKVASSVHXXXXXXXXXXXXXXXXXXXXXXXXXSLN 877
            LTGGVL++RNKF +ILYRGKDF+P  VA+ V                          +  
Sbjct: 480  LTGGVLLVRNKFLLILYRGKDFLPQGVANLV---VEREMALRRCQLNEEGARVKVAETCQ 536

Query: 878  PIDESVCSTSNIGTFSEFKDIQANYLPLNNGTSTXXXXXXXXXXXXXXXXXXXXXXXXXX 1057
              DE +  TS +GT SEF+DIQ  +  L   +S                           
Sbjct: 537  VADEPLAKTSTVGTLSEFEDIQTRFGDLKKESSELELQLEAQKENLERELRNQERKLSIL 596

Query: 1058 XXXXXXXXXXXMNLNSSWRPSEQSADRELLTEEERQAFQKIGLKMDEFLLLGRRGVYDGT 1237
                         L SS +P+EQ  D E++TEEER+  +KIGLK++ FL+LGRRGV++G 
Sbjct: 597  NIKIEKSAKELAKLKSSRQPAEQDVDLEIITEEERECLRKIGLKLNSFLVLGRRGVFNGV 656

Query: 1238 IESIHQHWKHREVVKVITMQKAFQQIAYTARLLEIESGGILVAVEKLRRGHAIIIYRGKN 1417
            IE ++QHWKHREVVKVITMQ+ F ++ YTA+ L  E+GGILV+VEKL+ GHA+IIYRGKN
Sbjct: 657  IEGVYQHWKHREVVKVITMQRVFARVIYTAKFLVAETGGILVSVEKLKEGHALIIYRGKN 716

Query: 1418 YSRMLEASPQNLSTKREALQRSIEIQRRGSMKYFAWQKQQTIWELK 1555
            Y R L+    NL TKREAL++SIE+QR GS+K+FA+Q++Q I +LK
Sbjct: 717  YRRPLKLMTNNLLTKREALRQSIELQRIGSLKFFAYQRRQAILDLK 762



 Score =  206 bits (524), Expect(2) = e-115
 Identities = 116/226 (51%), Positives = 136/226 (60%), Gaps = 14/226 (6%)
 Frame = +1

Query: 49  LTQIKTGGLVVWTKKDTLVVYRGNCQFF--------------GKKIQXXXXXXXXXXXXX 186
           + ++KT GLVVW KKD LVVYRG                   G++I              
Sbjct: 255 IIEMKTRGLVVWGKKDALVVYRGCSHGLTSKISSMKYPRCADGQEISSSTFSHLTSSNNI 314

Query: 187 TLDLRKSYGFTDWGVAQKDIEVGHSQITSMDWPSHEEAGSINESLYVREANRLLDGLGPR 366
            + L K  G T      ++     S   ++     E    +  SLY RE +RLLDGLGPR
Sbjct: 315 NMSLEKFNGSTLQSGLYREDREKESMPINIFMKEDENNQPVIGSLYERETDRLLDGLGPR 374

Query: 367 FIDWWWRTPLPVDADLLPEVVPEFKPPFRLCPPHERPKLGDVELTYLRKLARPLPTHFAL 546
           FIDWW R PLP+DADLLPE VP F+PP RL PP+ RP L D EL YLRKL  PLP HFAL
Sbjct: 375 FIDWWMRKPLPIDADLLPEEVPGFRPPLRLSPPNTRPNLTDDELKYLRKLTHPLPFHFAL 434

Query: 547 GKNTKLQGVAAAIIKLWEKSLIAKIAIKIGIPHTNNKQMAEELKKL 684
           GKN  LQG+AAAI+KLWEKSLIAKIAIK GI +T+N+QMA ELK L
Sbjct: 435 GKNRNLQGLAAAILKLWEKSLIAKIAIKWGIQNTDNEQMAYELKNL 480


>gb|EOY04146.1| maize chloroplast splicing factor CRS1, putative isoform 4 [Theobroma
            cacao]
          Length = 767

 Score =  241 bits (616), Expect(2) = e-115
 Identities = 131/286 (45%), Positives = 173/286 (60%)
 Frame = +2

Query: 698  LTGGVLILRNKFFIILYRGKDFIPGKVASSVHXXXXXXXXXXXXXXXXXXXXXXXXXSLN 877
            LTGGVL++RNKF +ILYRGKDF+P  VA+ V                          +  
Sbjct: 480  LTGGVLLVRNKFLLILYRGKDFLPQGVANLV---VEREMALRRCQLNEEGARVKVAETCQ 536

Query: 878  PIDESVCSTSNIGTFSEFKDIQANYLPLNNGTSTXXXXXXXXXXXXXXXXXXXXXXXXXX 1057
              DE +  TS +GT SEF+DIQ  +  L   +S                           
Sbjct: 537  VADEPLAKTSTVGTLSEFEDIQTRFGDLKKESSELELQLEAQKENLERELRNQERKLSIL 596

Query: 1058 XXXXXXXXXXXMNLNSSWRPSEQSADRELLTEEERQAFQKIGLKMDEFLLLGRRGVYDGT 1237
                         L SS +P+EQ  D E++TEEER+  +KIGLK++ FL+LGRRGV++G 
Sbjct: 597  NIKIEKSAKELAKLKSSRQPAEQDVDLEIITEEERECLRKIGLKLNSFLVLGRRGVFNGV 656

Query: 1238 IESIHQHWKHREVVKVITMQKAFQQIAYTARLLEIESGGILVAVEKLRRGHAIIIYRGKN 1417
            IE ++QHWKHREVVKVITMQ+ F ++ YTA+ L  E+GGILV+VEKL+ GHA+IIYRGKN
Sbjct: 657  IEGVYQHWKHREVVKVITMQRVFARVIYTAKFLVAETGGILVSVEKLKEGHALIIYRGKN 716

Query: 1418 YSRMLEASPQNLSTKREALQRSIEIQRRGSMKYFAWQKQQTIWELK 1555
            Y R L+    NL TKREAL++SIE+QR GS+K+FA+Q++Q I +LK
Sbjct: 717  YRRPLKLMTNNLLTKREALRQSIELQRIGSLKFFAYQRRQAILDLK 762



 Score =  206 bits (524), Expect(2) = e-115
 Identities = 116/226 (51%), Positives = 136/226 (60%), Gaps = 14/226 (6%)
 Frame = +1

Query: 49  LTQIKTGGLVVWTKKDTLVVYRGNCQFF--------------GKKIQXXXXXXXXXXXXX 186
           + ++KT GLVVW KKD LVVYRG                   G++I              
Sbjct: 255 IIEMKTRGLVVWGKKDALVVYRGCSHGLTSKISSMKYPRCADGQEISSSTFSHLTSSNNI 314

Query: 187 TLDLRKSYGFTDWGVAQKDIEVGHSQITSMDWPSHEEAGSINESLYVREANRLLDGLGPR 366
            + L K  G T      ++     S   ++     E    +  SLY RE +RLLDGLGPR
Sbjct: 315 NMSLEKFNGSTLQSGLYREDREKESMPINIFMKEDENNQPVIGSLYERETDRLLDGLGPR 374

Query: 367 FIDWWWRTPLPVDADLLPEVVPEFKPPFRLCPPHERPKLGDVELTYLRKLARPLPTHFAL 546
           FIDWW R PLP+DADLLPE VP F+PP RL PP+ RP L D EL YLRKL  PLP HFAL
Sbjct: 375 FIDWWMRKPLPIDADLLPEEVPGFRPPLRLSPPNTRPNLTDDELKYLRKLTHPLPFHFAL 434

Query: 547 GKNTKLQGVAAAIIKLWEKSLIAKIAIKIGIPHTNNKQMAEELKKL 684
           GKN  LQG+AAAI+KLWEKSLIAKIAIK GI +T+N+QMA ELK L
Sbjct: 435 GKNRNLQGLAAAILKLWEKSLIAKIAIKWGIQNTDNEQMAYELKNL 480