BLASTX nr result
ID: Ophiopogon24_contig00001409
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon24_contig00001409
(419 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_020261870.1| DNA-directed RNA polymerase II subunit 4 [As... 70 1e-12
gb|KDO59898.1| hypothetical protein CISIN_1g0325682mg, partial [... 65 3e-11
gb|OVA08111.1| RNA polymerase II [Macleaya cordata] 67 3e-11
ref|XP_010261089.1| PREDICTED: DNA-directed RNA polymerase II su... 67 3e-11
ref|XP_009398052.1| PREDICTED: DNA-directed RNA polymerase II su... 67 3e-11
gb|KMZ56185.1| DNA-directed RNA polymerase II subunit 4 [Zostera... 66 4e-11
gb|ABQ32301.1| putative 15.9 kDa subunit of RNA polymerase II [A... 66 6e-11
gb|OAY44345.1| hypothetical protein MANES_08G141900 [Manihot esc... 66 9e-11
gb|PON85673.1| RNA polymerase II, Rpb [Trema orientalis] 65 1e-10
gb|PON58712.1| RNA polymerase II, Rpb [Parasponia andersonii] 65 1e-10
ref|XP_010940283.1| PREDICTED: DNA-directed RNA polymerase II su... 65 1e-10
ref|XP_006428010.1| DNA-directed RNA polymerase II subunit 4 iso... 65 1e-10
ref|XP_022575728.1| DNA-directed RNA polymerase II subunit 4-lik... 63 2e-10
gb|PHU16073.1| DNA-directed RNA polymerase II subunit 4, partial... 64 2e-10
gb|PHT46458.1| DNA-directed RNA polymerase II subunit 4, partial... 64 2e-10
ref|XP_006494737.1| PREDICTED: DNA-directed RNA polymerase II su... 65 2e-10
gb|EXC19704.1| DNA-directed RNA polymerase II subunit [Morus not... 64 2e-10
ref|XP_021684994.1| DNA-directed RNA polymerase II subunit 4-lik... 64 2e-10
ref|XP_004509486.1| PREDICTED: DNA-directed RNA polymerase II su... 64 2e-10
gb|PNT35639.1| hypothetical protein POPTR_005G084900v3 [Populus ... 63 3e-10
>ref|XP_020261870.1| DNA-directed RNA polymerase II subunit 4 [Asparagus officinalis]
gb|ONK81688.1| uncharacterized protein A4U43_C01F31860 [Asparagus officinalis]
Length = 138
Score = 70.5 bits (171), Expect = 1e-12
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = +1
Query: 307 MSGEEEENAAELKIGDEFLKAKCLMNGEVARILDKKL 417
MS EEEENAAELKIGDEFLKAKCLMNGEVARILDK+L
Sbjct: 1 MSLEEEENAAELKIGDEFLKAKCLMNGEVARILDKRL 37
>gb|KDO59898.1| hypothetical protein CISIN_1g0325682mg, partial [Citrus sinensis]
Length = 78
Score = 65.1 bits (157), Expect = 3e-11
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = +1
Query: 307 MSGEEEENAAELKIGDEFLKAKCLMNGEVARILDKK 414
MSGEEEENAAELKIGDEFLKAKCLMN EVA ILD K
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHK 36
>gb|OVA08111.1| RNA polymerase II [Macleaya cordata]
Length = 138
Score = 66.6 bits (161), Expect = 3e-11
Identities = 33/36 (91%), Positives = 34/36 (94%)
Frame = +1
Query: 307 MSGEEEENAAELKIGDEFLKAKCLMNGEVARILDKK 414
MSGEEEENAAELKIGDEFLKAKCLMN EVA ILD+K
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILDRK 36
>ref|XP_010261089.1| PREDICTED: DNA-directed RNA polymerase II subunit 4 isoform X1
[Nelumbo nucifera]
Length = 138
Score = 66.6 bits (161), Expect = 3e-11
Identities = 33/36 (91%), Positives = 34/36 (94%)
Frame = +1
Query: 307 MSGEEEENAAELKIGDEFLKAKCLMNGEVARILDKK 414
MSGEEEENAAELKIGDEFLKAKCLMN EVA ILD+K
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILDRK 36
>ref|XP_009398052.1| PREDICTED: DNA-directed RNA polymerase II subunit 4 [Musa acuminata
subsp. malaccensis]
Length = 138
Score = 66.6 bits (161), Expect = 3e-11
Identities = 33/36 (91%), Positives = 34/36 (94%)
Frame = +1
Query: 307 MSGEEEENAAELKIGDEFLKAKCLMNGEVARILDKK 414
MSGEEEENAAELKIG+EFLKAKCLMN EVARILD K
Sbjct: 1 MSGEEEENAAELKIGEEFLKAKCLMNCEVARILDHK 36
>gb|KMZ56185.1| DNA-directed RNA polymerase II subunit 4 [Zostera marina]
Length = 138
Score = 66.2 bits (160), Expect = 4e-11
Identities = 31/36 (86%), Positives = 35/36 (97%)
Frame = +1
Query: 307 MSGEEEENAAELKIGDEFLKAKCLMNGEVARILDKK 414
MSGE+EENA+ELKIG+EFLKAKCLMNGEVA+ILD K
Sbjct: 1 MSGEDEENASELKIGEEFLKAKCLMNGEVAQILDHK 36
>gb|ABQ32301.1| putative 15.9 kDa subunit of RNA polymerase II [Artemisia annua]
Length = 138
Score = 65.9 bits (159), Expect = 6e-11
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = +1
Query: 307 MSGEEEENAAELKIGDEFLKAKCLMNGEVARILDKKL 417
MSGEEEENAAELKIGDEFLKAKCLMN EV+ ILD KL
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKL 37
>gb|OAY44345.1| hypothetical protein MANES_08G141900 [Manihot esculenta]
Length = 155
Score = 65.9 bits (159), Expect = 9e-11
Identities = 33/40 (82%), Positives = 36/40 (90%)
Frame = +1
Query: 295 TVSAMSGEEEENAAELKIGDEFLKAKCLMNGEVARILDKK 414
+V +MSGEEEENAAELKIGDEFLKAKCLMN EVA IL+ K
Sbjct: 14 SVPSMSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHK 53
>gb|PON85673.1| RNA polymerase II, Rpb [Trema orientalis]
Length = 138
Score = 65.1 bits (157), Expect = 1e-10
Identities = 32/36 (88%), Positives = 34/36 (94%)
Frame = +1
Query: 307 MSGEEEENAAELKIGDEFLKAKCLMNGEVARILDKK 414
MSGEEEENAAELKIGDEFLKAKCLMN EVA IL++K
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILERK 36
>gb|PON58712.1| RNA polymerase II, Rpb [Parasponia andersonii]
Length = 138
Score = 65.1 bits (157), Expect = 1e-10
Identities = 32/36 (88%), Positives = 34/36 (94%)
Frame = +1
Query: 307 MSGEEEENAAELKIGDEFLKAKCLMNGEVARILDKK 414
MSGEEEENAAELKIGDEFLKAKCLMN EVA IL++K
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILERK 36
>ref|XP_010940283.1| PREDICTED: DNA-directed RNA polymerase II subunit 4 [Elaeis
guineensis]
Length = 138
Score = 65.1 bits (157), Expect = 1e-10
Identities = 32/36 (88%), Positives = 34/36 (94%)
Frame = +1
Query: 307 MSGEEEENAAELKIGDEFLKAKCLMNGEVARILDKK 414
MSGEEEENAAELKIG+EFLKAKCLMN EVA ILD+K
Sbjct: 1 MSGEEEENAAELKIGEEFLKAKCLMNCEVALILDRK 36
>ref|XP_006428010.1| DNA-directed RNA polymerase II subunit 4 isoform X2 [Citrus
clementina]
ref|XP_006494738.1| PREDICTED: DNA-directed RNA polymerase II subunit 4 isoform X2
[Citrus sinensis]
gb|ESR41250.1| hypothetical protein CICLE_v10026735mg [Citrus clementina]
Length = 138
Score = 65.1 bits (157), Expect = 1e-10
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = +1
Query: 307 MSGEEEENAAELKIGDEFLKAKCLMNGEVARILDKK 414
MSGEEEENAAELKIGDEFLKAKCLMN EVA ILD K
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHK 36
>ref|XP_022575728.1| DNA-directed RNA polymerase II subunit 4-like [Brassica napus]
ref|XP_022575731.1| DNA-directed RNA polymerase II subunit 4-like [Brassica napus]
Length = 74
Score = 62.8 bits (151), Expect = 2e-10
Identities = 31/36 (86%), Positives = 33/36 (91%)
Frame = +1
Query: 307 MSGEEEENAAELKIGDEFLKAKCLMNGEVARILDKK 414
MSGEEEENAAELKIGDEFLKAKCLMN EV+ IL+ K
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHK 36
>gb|PHU16073.1| DNA-directed RNA polymerase II subunit 4, partial [Capsicum
chinense]
Length = 120
Score = 63.9 bits (154), Expect = 2e-10
Identities = 32/36 (88%), Positives = 33/36 (91%)
Frame = +1
Query: 307 MSGEEEENAAELKIGDEFLKAKCLMNGEVARILDKK 414
MSGEEEENAAELKIGDEFLKAKCLMN EVA IL+ K
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHK 36
>gb|PHT46458.1| DNA-directed RNA polymerase II subunit 4, partial [Capsicum
baccatum]
Length = 120
Score = 63.9 bits (154), Expect = 2e-10
Identities = 32/36 (88%), Positives = 33/36 (91%)
Frame = +1
Query: 307 MSGEEEENAAELKIGDEFLKAKCLMNGEVARILDKK 414
MSGEEEENAAELKIGDEFLKAKCLMN EVA IL+ K
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHK 36
>ref|XP_006494737.1| PREDICTED: DNA-directed RNA polymerase II subunit 4 isoform X1
[Citrus sinensis]
ref|XP_024036338.1| DNA-directed RNA polymerase II subunit 4 isoform X1 [Citrus
clementina]
Length = 169
Score = 65.1 bits (157), Expect = 2e-10
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = +1
Query: 307 MSGEEEENAAELKIGDEFLKAKCLMNGEVARILDKK 414
MSGEEEENAAELKIGDEFLKAKCLMN EVA ILD K
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHK 36
>gb|EXC19704.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
Length = 121
Score = 63.9 bits (154), Expect = 2e-10
Identities = 32/36 (88%), Positives = 33/36 (91%)
Frame = +1
Query: 307 MSGEEEENAAELKIGDEFLKAKCLMNGEVARILDKK 414
MSGEEEENAAELKIGDEFLKAKCLMN EVA IL+ K
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHK 36
>ref|XP_021684994.1| DNA-directed RNA polymerase II subunit 4-like [Hevea brasiliensis]
Length = 138
Score = 64.3 bits (155), Expect = 2e-10
Identities = 32/36 (88%), Positives = 33/36 (91%)
Frame = +1
Query: 307 MSGEEEENAAELKIGDEFLKAKCLMNGEVARILDKK 414
MSGEEEENA+ELKIGDEFLKAKCLMN EVA ILD K
Sbjct: 1 MSGEEEENASELKIGDEFLKAKCLMNCEVALILDHK 36
>ref|XP_004509486.1| PREDICTED: DNA-directed RNA polymerase II subunit 4 [Cicer
arietinum]
ref|XP_004510223.1| PREDICTED: DNA-directed RNA polymerase II subunit 4 [Cicer
arietinum]
Length = 138
Score = 64.3 bits (155), Expect = 2e-10
Identities = 32/36 (88%), Positives = 33/36 (91%)
Frame = +1
Query: 307 MSGEEEENAAELKIGDEFLKAKCLMNGEVARILDKK 414
MSGEEEENAAELKIGDEFLKAKCLMN EV+ ILD K
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHK 36
>gb|PNT35639.1| hypothetical protein POPTR_005G084900v3 [Populus trichocarpa]
Length = 81
Score = 62.8 bits (151), Expect = 3e-10
Identities = 31/36 (86%), Positives = 33/36 (91%)
Frame = +1
Query: 307 MSGEEEENAAELKIGDEFLKAKCLMNGEVARILDKK 414
MSGEEEENAAELKIGD+FLKAKCLMN EVA IL+ K
Sbjct: 1 MSGEEEENAAELKIGDDFLKAKCLMNCEVALILEHK 36