BLASTX nr result
ID: Ophiopogon24_contig00001260
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon24_contig00001260
(9210 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AEX94833.1| RNA polymerase beta' subunit (chloroplast) [Ophio... 2692 0.0
gb|AEX94832.1| RNA polymerase beta' subunit (chloroplast) [Lirio... 2688 0.0
gb|AEX94829.1| RNA polymerase beta' subunit (chloroplast) [Beauc... 2677 0.0
gb|AEX94830.1| RNA polymerase beta' subunit (chloroplast) [Dasyl... 2673 0.0
ref|YP_009432293.1| RNA polymerase beta' subunit (chloroplast) [... 2667 0.0
ref|YP_009335323.1| RNA polymerase beta subunit (chloroplast) [N... 2661 0.0
gb|AEX94836.1| RNA polymerase beta' subunit (chloroplast) [Maian... 2661 0.0
ref|YP_009183189.1| RNA polymerase beta' subunit (chloroplast) [... 2656 0.0
ref|YP_009431208.1| RNA polymerase beta' subunit (chloroplast) [... 2655 0.0
gb|AEX94834.1| RNA polymerase beta' subunit (chloroplast) [Ruscu... 2647 0.0
gb|AEX94835.1| RNA polymerase beta' subunit (chloroplast) [Sanse... 2621 0.0
gb|AEX94827.1| RNA polymerase beta' subunit (chloroplast) [Cordy... 2617 0.0
ref|YP_009432547.1| RNA polymerase beta' subunit (chloroplast) [... 2612 0.0
ref|YP_009335154.1| RNA polymerase beta subunit (chloroplast) [H... 2607 0.0
ref|YP_009335069.1| RNA polymerase beta subunit (chloroplast) [H... 2605 0.0
ref|YP_009335237.1| RNA polymerase beta subunit (chloroplast) [M... 2598 0.0
ref|YP_009335578.1| RNA polymerase beta subunit (chloroplast) [Y... 2597 0.0
ref|YP_009045556.1| RNA polymerase betasubunit (chloroplast) [Cy... 2597 0.0
ref|YP_009432631.1| RNA polymerase beta' subunit (chloroplast) [... 2597 0.0
ref|YP_009334818.1| RNA polymerase beta subunit (chloroplast) [H... 2596 0.0
>gb|AEX94833.1| RNA polymerase beta' subunit (chloroplast) [Ophiopogon japonicus]
Length = 1381
Score = 2692 bits (6977), Expect = 0.0
Identities = 1348/1381 (97%), Positives = 1350/1381 (97%)
Frame = +2
Query: 1796 MAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 1975
MAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID
Sbjct: 1 MAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60
Query: 1976 DLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2155
DLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2156 MTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2335
MTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2336 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTEKIFV 2515
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTEKIFV
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTEKIFV 240
Query: 2516 QTLIGRVLADDIYMGIRCIAARNQDIGVGLANRFITFRAQPIYIRTPFTCRNTSWICQLC 2695
QTLIGRVLADDIYMGIRCIAARNQDIG+GLANRFITFRAQPIYIRTPFTCRNTSWICQLC
Sbjct: 241 QTLIGRVLADDIYMGIRCIAARNQDIGIGLANRFITFRAQPIYIRTPFTCRNTSWICQLC 300
Query: 2696 YGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIK 2875
YGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLR AEHVRAPSNGKIK
Sbjct: 301 YGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIK 360
Query: 2876 FNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDILHSVNIPPKSLILVQNDQYVESEQVIA 3055
FNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDI+HSVNIPPKSLILVQNDQYVESEQVIA
Sbjct: 361 FNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDIIHSVNIPPKSLILVQNDQYVESEQVIA 420
Query: 3056 EIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWILGGGP 3235
EIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWILGGGP
Sbjct: 421 EIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWILGGGP 480
Query: 3236 CRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYS 3415
CRSS VSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYS
Sbjct: 481 CRSSRVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYS 540
Query: 3416 RLDRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPI 3595
RLDRIISNGHWNFIYP ILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPI
Sbjct: 541 RLDRIISNGHWNFIYPSILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPI 600
Query: 3596 NGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVD 3775
NGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVD
Sbjct: 601 NGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVD 660
Query: 3776 RFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIF 3955
RFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIF
Sbjct: 661 RFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIF 720
Query: 3956 SGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYVQRITPIKKKYFVLVRPV 4135
SGDIHFPGETDKISRHSGILIPPG WIYVQRITPIKKKYFVLVRPV
Sbjct: 721 SGDIHFPGETDKISRHSGILIPPGTEKKNPKESKTKSKNWIYVQRITPIKKKYFVLVRPV 780
Query: 4136 VTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTCLVLN 4315
VTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTCLVLN
Sbjct: 781 VTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTCLVLN 840
Query: 4316 WDQEKNGSMEEVHASFVEVRANGLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDNGLDR 4495
WDQEKNGSMEEVHASFVEVRAN LIRDFIRIELVKSTISYTGKRYDTAGSGLIPDNGLDR
Sbjct: 841 WDQEKNGSMEEVHASFVEVRANDLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDNGLDR 900
Query: 4496 TNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLIILSSFNCFRVGPFNGSKYNNVAKE 4675
TNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLIILSSFNCFRVGPFNGSKYNNVAKE
Sbjct: 901 TNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLIILSSFNCFRVGPFNGSKYNNVAKE 960
Query: 4676 SNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEVLKYC 4855
SNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEVLKYC
Sbjct: 961 SNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEVLKYC 1020
Query: 4856 LIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKYGPRI 5035
LIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKYGP I
Sbjct: 1021 LIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKYGPHI 1080
Query: 5036 KKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQG 5215
KKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQG
Sbjct: 1081 KKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQG 1140
Query: 5216 LPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISLVNKI 5395
LPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISLVNKI
Sbjct: 1141 LPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISLVNKI 1200
Query: 5396 QKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRALDEAI 5575
QKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRALDEAI
Sbjct: 1201 QKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRALDEAI 1260
Query: 5576 CYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG 5755
CYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG
Sbjct: 1261 CYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG 1320
Query: 5756 TGFKKLVHRSRQDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFKRIHN 5935
TGFKKLVHRSRQDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFKRIHN
Sbjct: 1321 TGFKKLVHRSRQDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFKRIHN 1380
Query: 5936 S 5938
S
Sbjct: 1381 S 1381
>gb|AEX94832.1| RNA polymerase beta' subunit (chloroplast) [Liriope spicata]
Length = 1385
Score = 2688 bits (6967), Expect = 0.0
Identities = 1347/1385 (97%), Positives = 1351/1385 (97%)
Frame = +2
Query: 1784 VEVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 1963
+EVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 1964 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2143
LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2144 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2323
PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2324 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTE 2503
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTE
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTE 240
Query: 2504 KIFVQTLIGRVLADDIYMGIRCIAARNQDIGVGLANRFITFRAQPIYIRTPFTCRNTSWI 2683
KIFVQTLIGRVLADDIYMGIRCIAARNQDIG+GLANRFITFRAQPIYIRTPFTCRNTSWI
Sbjct: 241 KIFVQTLIGRVLADDIYMGIRCIAARNQDIGIGLANRFITFRAQPIYIRTPFTCRNTSWI 300
Query: 2684 CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSN 2863
CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLR AEHVRAPSN
Sbjct: 301 CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSN 360
Query: 2864 GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDILHSVNIPPKSLILVQNDQYVESE 3043
GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDI+HSVNIPPKSLILVQNDQYVESE
Sbjct: 361 GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDIIHSVNIPPKSLILVQNDQYVESE 420
Query: 3044 QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 3223
QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL
Sbjct: 421 QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 480
Query: 3224 GGGPCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREI 3403
GGPCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREI
Sbjct: 481 AGGPCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREI 540
Query: 3404 LDYSRLDRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISI 3583
LDYSRLDRIISNGHWNFIYP ILQENSDFLAKRRRNRFLIPLQYDQ REKELI SFGISI
Sbjct: 541 LDYSRLDRIISNGHWNFIYPSILQENSDFLAKRRRNRFLIPLQYDQGREKELISSFGISI 600
Query: 3584 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQ 3763
EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQ
Sbjct: 601 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQ 660
Query: 3764 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 3943
MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE
Sbjct: 661 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 720
Query: 3944 LKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYVQRITPIKKKYFVL 4123
LKIFSGDIHFPGETDKISRHSGILIPPG WIYVQRITPIKKKYFVL
Sbjct: 721 LKIFSGDIHFPGETDKISRHSGILIPPGTEKKNSKESKTKSKNWIYVQRITPIKKKYFVL 780
Query: 4124 VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC 4303
VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC
Sbjct: 781 VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC 840
Query: 4304 LVLNWDQEKNGSMEEVHASFVEVRANGLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN 4483
LVLNWDQEKNGSMEEVHASFVEVRAN LIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN
Sbjct: 841 LVLNWDQEKNGSMEEVHASFVEVRANDLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN 900
Query: 4484 GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLIILSSFNCFRVGPFNGSKYNN 4663
GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSL ILSSFNCFRVGPFNGSKYNN
Sbjct: 901 GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLRILSSFNCFRVGPFNGSKYNN 960
Query: 4664 VAKESNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 4843
VAKESNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV
Sbjct: 961 VAKESNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 1020
Query: 4844 LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKY 5023
LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKY
Sbjct: 1021 LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKY 1080
Query: 5024 GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD 5203
GP IKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD
Sbjct: 1081 GPHIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD 1140
Query: 5204 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISL 5383
ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISL
Sbjct: 1141 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISL 1200
Query: 5384 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 5563
VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL
Sbjct: 1201 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 1260
Query: 5564 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 5743
DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI
Sbjct: 1261 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 1320
Query: 5744 IPVGTGFKKLVHRSRQDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFK 5923
IPVGTGFKKLVHRSRQDIHLEIK+KNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFK
Sbjct: 1321 IPVGTGFKKLVHRSRQDIHLEIKRKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFK 1380
Query: 5924 RIHNS 5938
RIHNS
Sbjct: 1381 RIHNS 1385
>gb|AEX94829.1| RNA polymerase beta' subunit (chloroplast) [Beaucarnea hookeri]
Length = 1385
Score = 2677 bits (6938), Expect = 0.0
Identities = 1341/1385 (96%), Positives = 1347/1385 (97%)
Frame = +2
Query: 1784 VEVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 1963
+EVLMAERADLVFHNKVIDGT MKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERADLVFHNKVIDGTVMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 1964 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2143
LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2144 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2323
PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2324 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTE 2503
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAI VSPRNGVTE
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAIFVSPRNGVTE 240
Query: 2504 KIFVQTLIGRVLADDIYMGIRCIAARNQDIGVGLANRFITFRAQPIYIRTPFTCRNTSWI 2683
KIFVQTLIGRVLAD+IYMGIRCIAARNQDIG+GLANRFITFRAQPIYIRTPFTCRNTSWI
Sbjct: 241 KIFVQTLIGRVLADNIYMGIRCIAARNQDIGIGLANRFITFRAQPIYIRTPFTCRNTSWI 300
Query: 2684 CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSN 2863
CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLR AEHVRAPSN
Sbjct: 301 CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSN 360
Query: 2864 GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDILHSVNIPPKSLILVQNDQYVESE 3043
GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDI+HSVNIPPKSLILVQNDQYVESE
Sbjct: 361 GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDIIHSVNIPPKSLILVQNDQYVESE 420
Query: 3044 QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 3223
QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL
Sbjct: 421 QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 480
Query: 3224 GGGPCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREI 3403
GGPCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREI
Sbjct: 481 AGGPCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREI 540
Query: 3404 LDYSRLDRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISI 3583
LDYSRLDRIISNGHWNFIYP ILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISI
Sbjct: 541 LDYSRLDRIISNGHWNFIYPSILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISI 600
Query: 3584 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQ 3763
EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQ
Sbjct: 601 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQ 660
Query: 3764 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 3943
MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE
Sbjct: 661 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 720
Query: 3944 LKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYVQRITPIKKKYFVL 4123
LKIFSGDIHFPGETDKISRHSGILIPPG WIYVQRITPIKKKYFVL
Sbjct: 721 LKIFSGDIHFPGETDKISRHSGILIPPGTEKKNSKESKTKSKNWIYVQRITPIKKKYFVL 780
Query: 4124 VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC 4303
VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC
Sbjct: 781 VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC 840
Query: 4304 LVLNWDQEKNGSMEEVHASFVEVRANGLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN 4483
LVLNWDQEKNGSMEEVHASFVEVRAN LIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN
Sbjct: 841 LVLNWDQEKNGSMEEVHASFVEVRANDLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN 900
Query: 4484 GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLIILSSFNCFRVGPFNGSKYNN 4663
GLDRTNINPFYSKVKIPLVT+HQGTIGTLLNRNKEGQSL ILSSFNCFRV PFNGSKYNN
Sbjct: 901 GLDRTNINPFYSKVKIPLVTKHQGTIGTLLNRNKEGQSLRILSSFNCFRVVPFNGSKYNN 960
Query: 4664 VAKESNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 4843
VAKESNPITPI+GLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV
Sbjct: 961 VAKESNPITPIRGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 1020
Query: 4844 LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKY 5023
LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETST ISIGQF CENICLFKY
Sbjct: 1021 LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTIISIGQFICENICLFKY 1080
Query: 5024 GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD 5203
GP IKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD
Sbjct: 1081 GPHIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD 1140
Query: 5204 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISL 5383
ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIG ELTIAQSRISL
Sbjct: 1141 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGVELTIAQSRISL 1200
Query: 5384 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 5563
VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL
Sbjct: 1201 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 1260
Query: 5564 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 5743
DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI
Sbjct: 1261 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 1320
Query: 5744 IPVGTGFKKLVHRSRQDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFK 5923
IPVGTGFKKLVHRSRQDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFK
Sbjct: 1321 IPVGTGFKKLVHRSRQDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFK 1380
Query: 5924 RIHNS 5938
RIHNS
Sbjct: 1381 RIHNS 1385
>gb|AEX94830.1| RNA polymerase beta' subunit (chloroplast) [Dasylirion wheeleri]
Length = 1385
Score = 2673 bits (6928), Expect = 0.0
Identities = 1340/1385 (96%), Positives = 1347/1385 (97%)
Frame = +2
Query: 1784 VEVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 1963
+EVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 1964 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2143
LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2144 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2323
PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2324 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTE 2503
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAI VSPRNGVTE
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAIFVSPRNGVTE 240
Query: 2504 KIFVQTLIGRVLADDIYMGIRCIAARNQDIGVGLANRFITFRAQPIYIRTPFTCRNTSWI 2683
KIFVQTLIGRVLADDIYMGIRCIAARNQDIG+GLANRFITFRAQPIYIRTPFTCRNTSWI
Sbjct: 241 KIFVQTLIGRVLADDIYMGIRCIAARNQDIGIGLANRFITFRAQPIYIRTPFTCRNTSWI 300
Query: 2684 CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSN 2863
CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLR AEH+RAPSN
Sbjct: 301 CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSN 360
Query: 2864 GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDILHSVNIPPKSLILVQNDQYVESE 3043
GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDI+HSVNIPPKSLILVQNDQYVESE
Sbjct: 361 GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDIIHSVNIPPKSLILVQNDQYVESE 420
Query: 3044 QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 3223
QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTS+LWIL
Sbjct: 421 QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSNLWIL 480
Query: 3224 GGGPCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREI 3403
GGPCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLD SGTRKKDREI
Sbjct: 481 AGGPCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDLSGTRKKDREI 540
Query: 3404 LDYSRLDRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISI 3583
LDYSRLDRIISNGHWNFIYP ILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISI
Sbjct: 541 LDYSRLDRIISNGHWNFIYPSILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISI 600
Query: 3584 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQ 3763
EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKE+LIEYRGAKEFSPKYQ
Sbjct: 601 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKENLIEYRGAKEFSPKYQ 660
Query: 3764 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 3943
MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE
Sbjct: 661 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 720
Query: 3944 LKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYVQRITPIKKKYFVL 4123
LKIFSGDIHFPGETDKISRHSGILIPPG WIYVQRITPIKKKYFVL
Sbjct: 721 LKIFSGDIHFPGETDKISRHSGILIPPGTEKKNSKESKTKSKNWIYVQRITPIKKKYFVL 780
Query: 4124 VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC 4303
VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC
Sbjct: 781 VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC 840
Query: 4304 LVLNWDQEKNGSMEEVHASFVEVRANGLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN 4483
LVLNWDQEKNGSMEEVHASFVEVRAN LIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN
Sbjct: 841 LVLNWDQEKNGSMEEVHASFVEVRANDLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN 900
Query: 4484 GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLIILSSFNCFRVGPFNGSKYNN 4663
GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSL ILSSFNCFRV PFNGSKYNN
Sbjct: 901 GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLRILSSFNCFRVVPFNGSKYNN 960
Query: 4664 VAKESNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 4843
VAKESNPITPI+GLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV
Sbjct: 961 VAKESNPITPIRGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 1020
Query: 4844 LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKY 5023
LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETST ISIGQF CENICLFKY
Sbjct: 1021 LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTIISIGQFICENICLFKY 1080
Query: 5024 GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD 5203
GP IKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD
Sbjct: 1081 GPHIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD 1140
Query: 5204 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISL 5383
ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIG ELTIAQSRISL
Sbjct: 1141 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGVELTIAQSRISL 1200
Query: 5384 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 5563
VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL
Sbjct: 1201 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 1260
Query: 5564 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 5743
DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI
Sbjct: 1261 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 1320
Query: 5744 IPVGTGFKKLVHRSRQDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFK 5923
IPVGTGFKKLVHRSRQDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFK
Sbjct: 1321 IPVGTGFKKLVHRSRQDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFK 1380
Query: 5924 RIHNS 5938
RIHNS
Sbjct: 1381 RIHNS 1385
>ref|YP_009432293.1| RNA polymerase beta' subunit (chloroplast) [Polygonatum stenophyllum]
gb|ATB18548.1| RNA polymerase beta' subunit (chloroplast) [Polygonatum stenophyllum]
Length = 1381
Score = 2667 bits (6913), Expect = 0.0
Identities = 1336/1381 (96%), Positives = 1342/1381 (97%)
Frame = +2
Query: 1796 MAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 1975
MAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID
Sbjct: 1 MAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60
Query: 1976 DLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2155
DLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2156 MTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2335
MTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2336 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTEKIFV 2515
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTEK+FV
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTEKMFV 240
Query: 2516 QTLIGRVLADDIYMGIRCIAARNQDIGVGLANRFITFRAQPIYIRTPFTCRNTSWICQLC 2695
QTLIGRVLADDIYMGIRCIAARNQDIG+GLANRFITFRAQPIYIRTPFTCRNTSWICQLC
Sbjct: 241 QTLIGRVLADDIYMGIRCIAARNQDIGIGLANRFITFRAQPIYIRTPFTCRNTSWICQLC 300
Query: 2696 YGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIK 2875
YGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLR AEHVRAPSNGKIK
Sbjct: 301 YGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIK 360
Query: 2876 FNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDILHSVNIPPKSLILVQNDQYVESEQVIA 3055
FNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDI+HSVNIPPKSLILVQNDQYVESEQVIA
Sbjct: 361 FNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDIIHSVNIPPKSLILVQNDQYVESEQVIA 420
Query: 3056 EIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWILGGGP 3235
EIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL GGP
Sbjct: 421 EIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWILAGGP 480
Query: 3236 CRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYS 3415
CRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKK REILDYS
Sbjct: 481 CRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKYREILDYS 540
Query: 3416 RLDRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPI 3595
RLDRIISNGHWNFIYP ILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPI
Sbjct: 541 RLDRIISNGHWNFIYPSILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPI 600
Query: 3596 NGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVD 3775
NGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKE SPKYQMKVD
Sbjct: 601 NGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKELSPKYQMKVD 660
Query: 3776 RFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIF 3955
RFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIF
Sbjct: 661 RFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIF 720
Query: 3956 SGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYVQRITPIKKKYFVLVRPV 4135
SGDIHFPGETDKISRHSGILIPPG WIYVQRITPIKKKYFVLVRPV
Sbjct: 721 SGDIHFPGETDKISRHSGILIPPGTEKKNSKESKTKSKNWIYVQRITPIKKKYFVLVRPV 780
Query: 4136 VTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTCLVLN 4315
VTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTCLVLN
Sbjct: 781 VTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTCLVLN 840
Query: 4316 WDQEKNGSMEEVHASFVEVRANGLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDNGLDR 4495
WDQEKN SMEEVHASFVEVRAN LIRDFIRIELVKSTISYTGKRYDTAGSGLIPDNGLDR
Sbjct: 841 WDQEKNSSMEEVHASFVEVRANDLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDNGLDR 900
Query: 4496 TNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLIILSSFNCFRVGPFNGSKYNNVAKE 4675
TNINPFYSKVKI LVTQHQGTIGTLLNRNKEGQSL ILSSFNCFRVGPFNGSKYNNVAKE
Sbjct: 901 TNINPFYSKVKISLVTQHQGTIGTLLNRNKEGQSLRILSSFNCFRVGPFNGSKYNNVAKE 960
Query: 4676 SNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEVLKYC 4855
SNPITPI+GLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTF+VLEVLKYC
Sbjct: 961 SNPITPIRGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFKVLEVLKYC 1020
Query: 4856 LIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKYGPRI 5035
LIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETST ISIGQF CENICLFKYGP I
Sbjct: 1021 LIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTIISIGQFICENICLFKYGPHI 1080
Query: 5036 KKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQG 5215
KKSGQI IVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQG
Sbjct: 1081 KKSGQIFIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQG 1140
Query: 5216 LPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISLVNKI 5395
LPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISLVNKI
Sbjct: 1141 LPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISLVNKI 1200
Query: 5396 QKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRALDEAI 5575
QKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRALDEAI
Sbjct: 1201 QKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRALDEAI 1260
Query: 5576 CYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG 5755
CYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG
Sbjct: 1261 CYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG 1320
Query: 5756 TGFKKLVHRSRQDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFKRIHN 5935
TGFKKLVHRS+QDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFKRIHN
Sbjct: 1321 TGFKKLVHRSKQDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFKRIHN 1380
Query: 5936 S 5938
S
Sbjct: 1381 S 1381
>ref|YP_009335323.1| RNA polymerase beta subunit (chloroplast) [Nolina atopocarpa]
gb|AEZ49490.1| RNA polymerase beta'' subunit, partial (plastid) [Nolina atopocarpa]
gb|APO12381.1| RNA polymerase beta subunit (chloroplast) [Nolina atopocarpa]
Length = 1385
Score = 2661 bits (6898), Expect = 0.0
Identities = 1337/1385 (96%), Positives = 1342/1385 (96%)
Frame = +2
Query: 1784 VEVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 1963
+EVLMAE+ADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAEQADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 1964 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2143
LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2144 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2323
PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2324 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTE 2503
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAI VSPRNGVTE
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAIFVSPRNGVTE 240
Query: 2504 KIFVQTLIGRVLADDIYMGIRCIAARNQDIGVGLANRFITFRAQPIYIRTPFTCRNTSWI 2683
KIFVQTLIGRVLADDIYMGIRCIAARNQDIG+GLANRFITFRAQPIYIRTPFTCRNTSWI
Sbjct: 241 KIFVQTLIGRVLADDIYMGIRCIAARNQDIGIGLANRFITFRAQPIYIRTPFTCRNTSWI 300
Query: 2684 CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSN 2863
CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLR AEHVRAPSN
Sbjct: 301 CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSN 360
Query: 2864 GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDILHSVNIPPKSLILVQNDQYVESE 3043
GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDI+HSVNIPPKSLILVQNDQYVESE
Sbjct: 361 GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDIIHSVNIPPKSLILVQNDQYVESE 420
Query: 3044 QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 3223
QVIAEIRA TSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL
Sbjct: 421 QVIAEIRARTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 480
Query: 3224 GGGPCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREI 3403
GGPCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREI
Sbjct: 481 AGGPCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREI 540
Query: 3404 LDYSRLDRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISI 3583
LDYSRLDRIISNGHWNFIYP ILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISI
Sbjct: 541 LDYSRLDRIISNGHWNFIYPSILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISI 600
Query: 3584 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQ 3763
EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKE SPKYQ
Sbjct: 601 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKELSPKYQ 660
Query: 3764 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 3943
MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE
Sbjct: 661 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 720
Query: 3944 LKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYVQRITPIKKKYFVL 4123
LKIFSGDIHFPGETDKISRHSGILIPPG IYVQRITPIKKKYFVL
Sbjct: 721 LKIFSGDIHFPGETDKISRHSGILIPPGTEKKNSKESKTKSKNGIYVQRITPIKKKYFVL 780
Query: 4124 VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC 4303
VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR IYHTSIQLVRTC
Sbjct: 781 VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIREIYHTSIQLVRTC 840
Query: 4304 LVLNWDQEKNGSMEEVHASFVEVRANGLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN 4483
LVLNWDQEKNGSMEEVHASFVEVRAN LIRDFIRIELVKSTISYTGKRYD AGSGLIPDN
Sbjct: 841 LVLNWDQEKNGSMEEVHASFVEVRANDLIRDFIRIELVKSTISYTGKRYDMAGSGLIPDN 900
Query: 4484 GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLIILSSFNCFRVGPFNGSKYNN 4663
GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSL ILSSFNCFRV PFNGSKYNN
Sbjct: 901 GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLRILSSFNCFRVVPFNGSKYNN 960
Query: 4664 VAKESNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 4843
VAKESNPITPI+GLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV
Sbjct: 961 VAKESNPITPIRGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 1020
Query: 4844 LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKY 5023
LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETST ISIGQF CENICLFKY
Sbjct: 1021 LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTIISIGQFICENICLFKY 1080
Query: 5024 GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD 5203
GP IKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD
Sbjct: 1081 GPHIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD 1140
Query: 5204 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISL 5383
ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIG ELTIAQSRISL
Sbjct: 1141 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGVELTIAQSRISL 1200
Query: 5384 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 5563
VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL
Sbjct: 1201 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 1260
Query: 5564 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 5743
DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI
Sbjct: 1261 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 1320
Query: 5744 IPVGTGFKKLVHRSRQDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFK 5923
IPVGTGFKKLVH SRQDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFK
Sbjct: 1321 IPVGTGFKKLVHCSRQDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFK 1380
Query: 5924 RIHNS 5938
RIHNS
Sbjct: 1381 RIHNS 1385
>gb|AEX94836.1| RNA polymerase beta' subunit (chloroplast) [Maianthemum stellatum]
Length = 1385
Score = 2661 bits (6898), Expect = 0.0
Identities = 1336/1385 (96%), Positives = 1344/1385 (97%)
Frame = +2
Query: 1784 VEVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 1963
+EVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 1964 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2143
LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2144 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2323
PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2324 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTE 2503
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTE
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTE 240
Query: 2504 KIFVQTLIGRVLADDIYMGIRCIAARNQDIGVGLANRFITFRAQPIYIRTPFTCRNTSWI 2683
KIFVQTLIGRVLADDIYMGIRCIAARNQDIG+GLANRFITFRAQPIYIRTPFTCRNTSWI
Sbjct: 241 KIFVQTLIGRVLADDIYMGIRCIAARNQDIGIGLANRFITFRAQPIYIRTPFTCRNTSWI 300
Query: 2684 CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSN 2863
CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLR AEHVRAPSN
Sbjct: 301 CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSN 360
Query: 2864 GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDILHSVNIPPKSLILVQNDQYVESE 3043
GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTI+SRDI+HSVNIPPKSLILVQNDQYVESE
Sbjct: 361 GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIDSRDIIHSVNIPPKSLILVQNDQYVESE 420
Query: 3044 QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 3223
QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL
Sbjct: 421 QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 480
Query: 3224 GGGPCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREI 3403
G PCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREI
Sbjct: 481 AGCPCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREI 540
Query: 3404 LDYSRLDRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISI 3583
LDYSRLDRIISNGHWN IYP ILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISI
Sbjct: 541 LDYSRLDRIISNGHWNLIYPSILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISI 600
Query: 3584 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQ 3763
EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQ
Sbjct: 601 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQ 660
Query: 3764 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 3943
MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE
Sbjct: 661 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 720
Query: 3944 LKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYVQRITPIKKKYFVL 4123
LKIFSGDIHFPGETDKISRHSGILIPPG IYVQRITPIKKKYFVL
Sbjct: 721 LKIFSGDIHFPGETDKISRHSGILIPPGTEKKNSKESKKKSKNGIYVQRITPIKKKYFVL 780
Query: 4124 VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC 4303
VRPVVTYEIADGINLAKLF QDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC
Sbjct: 781 VRPVVTYEIADGINLAKLFSQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC 840
Query: 4304 LVLNWDQEKNGSMEEVHASFVEVRANGLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN 4483
LVLNWDQEKNGSMEEVHASFVEVRAN LIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN
Sbjct: 841 LVLNWDQEKNGSMEEVHASFVEVRANDLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN 900
Query: 4484 GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLIILSSFNCFRVGPFNGSKYNN 4663
GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSL ILSSFNCFRVGPFNGSKYNN
Sbjct: 901 GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLRILSSFNCFRVGPFNGSKYNN 960
Query: 4664 VAKESNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 4843
VAKESNPITPI+GLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV
Sbjct: 961 VAKESNPITPIRGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 1020
Query: 4844 LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKY 5023
LKYCLIDENRRIYNPSP NNIILNPSHLNWCFLHYNYCEETST ISIGQF CENI +FKY
Sbjct: 1021 LKYCLIDENRRIYNPSPWNNIILNPSHLNWCFLHYNYCEETSTIISIGQFICENISIFKY 1080
Query: 5024 GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD 5203
GP IKKSGQI+IVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD
Sbjct: 1081 GPHIKKSGQIIIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD 1140
Query: 5204 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISL 5383
ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTI QSRISL
Sbjct: 1141 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIVQSRISL 1200
Query: 5384 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 5563
VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL
Sbjct: 1201 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 1260
Query: 5564 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 5743
DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI
Sbjct: 1261 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 1320
Query: 5744 IPVGTGFKKLVHRSRQDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFK 5923
IPVGTGF+KLVHRSRQDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFK
Sbjct: 1321 IPVGTGFQKLVHRSRQDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFK 1380
Query: 5924 RIHNS 5938
RIHNS
Sbjct: 1381 RIHNS 1385
>ref|YP_009183189.1| RNA polymerase beta' subunit (chloroplast) [Polygonatum
verticillatum]
ref|YP_009236350.1| DNA-directed RNA polymerase beta'' chain (chloroplast) [Polygonatum
sibiricum]
gb|ALM87707.1| RNA polymerase beta' subunit (chloroplast) [Polygonatum
verticillatum]
gb|AMF84063.1| DNA-directed RNA polymerase beta'' chain (chloroplast) [Polygonatum
sibiricum]
Length = 1382
Score = 2656 bits (6884), Expect = 0.0
Identities = 1335/1382 (96%), Positives = 1341/1382 (97%), Gaps = 1/1382 (0%)
Frame = +2
Query: 1796 MAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 1975
MAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID
Sbjct: 1 MAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60
Query: 1976 DLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2155
DLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2156 MTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2335
MTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2336 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTEKIFV 2515
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTEKIFV
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTEKIFV 240
Query: 2516 QTLIGRVLADDIYMGIRCIAARNQDIGVGLANRFITFRAQPIYIRTPFTCRNTSWICQLC 2695
QTLIGRVLADDIYMGIRCIAARNQDIG+GLANRFITFRAQPIYIRTPFTCRNTSWICQLC
Sbjct: 241 QTLIGRVLADDIYMGIRCIAARNQDIGIGLANRFITFRAQPIYIRTPFTCRNTSWICQLC 300
Query: 2696 YGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIK 2875
YGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLR AEHVRAPSNGKIK
Sbjct: 301 YGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIK 360
Query: 2876 FNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDILHSVNIPPKSLILVQNDQYVESEQVIA 3055
FNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDI+HSVNIPPKSLILVQNDQYVESEQVIA
Sbjct: 361 FNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDIIHSVNIPPKSLILVQNDQYVESEQVIA 420
Query: 3056 EIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWILGGGP 3235
EIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL GGP
Sbjct: 421 EIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWILAGGP 480
Query: 3236 CRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYS 3415
CRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKK REILDYS
Sbjct: 481 CRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKYREILDYS 540
Query: 3416 RLDRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQ-YDQEREKELIPSFGISIEIP 3592
RLDRIISNGHWNFIYP ILQENSDFLAKRRRNRFLIPLQ YDQEREKELIPSFGISIEIP
Sbjct: 541 RLDRIISNGHWNFIYPSILQENSDFLAKRRRNRFLIPLQQYDQEREKELIPSFGISIEIP 600
Query: 3593 INGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKV 3772
INGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKE SPKYQMKV
Sbjct: 601 INGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKELSPKYQMKV 660
Query: 3773 DRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKI 3952
DRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKI
Sbjct: 661 DRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKI 720
Query: 3953 FSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYVQRITPIKKKYFVLVRP 4132
FSGDIHFPGETDKISRHSGILIPPG IYVQRITPIKKKYFVLVRP
Sbjct: 721 FSGDIHFPGETDKISRHSGILIPPGTEKKNSKESKTKSKNGIYVQRITPIKKKYFVLVRP 780
Query: 4133 VVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTCLVL 4312
VVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTCLVL
Sbjct: 781 VVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTCLVL 840
Query: 4313 NWDQEKNGSMEEVHASFVEVRANGLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDNGLD 4492
NWDQEKNGSMEEVHASFVEVRAN LIRDFIRIELVKSTISYT KRYDTAGSGLIPDNGLD
Sbjct: 841 NWDQEKNGSMEEVHASFVEVRANDLIRDFIRIELVKSTISYTEKRYDTAGSGLIPDNGLD 900
Query: 4493 RTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLIILSSFNCFRVGPFNGSKYNNVAK 4672
RTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSL ILSSFNCFRVGPFNGSKYNNVAK
Sbjct: 901 RTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLRILSSFNCFRVGPFNGSKYNNVAK 960
Query: 4673 ESNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEVLKY 4852
ESNPITPI+GLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEVLKY
Sbjct: 961 ESNPITPIRGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEVLKY 1020
Query: 4853 CLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKYGPR 5032
CLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETST ISIGQF CENICLFKYGP
Sbjct: 1021 CLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTIISIGQFICENICLFKYGPH 1080
Query: 5033 IKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQ 5212
I+KSGQI IVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQ
Sbjct: 1081 IQKSGQIFIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQ 1140
Query: 5213 GLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISLVNK 5392
GLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISLVNK
Sbjct: 1141 GLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISLVNK 1200
Query: 5393 IQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRALDEA 5572
IQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRALDEA
Sbjct: 1201 IQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRALDEA 1260
Query: 5573 ICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPV 5752
ICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV+LGGIIPV
Sbjct: 1261 ICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVILGGIIPV 1320
Query: 5753 GTGFKKLVHRSRQDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFKRIH 5932
GTGFKKLVHRS+QDIHLEIKKKNLFELEMRDILLHHREFF SCAPSNFYDTPEKSFKRIH
Sbjct: 1321 GTGFKKLVHRSKQDIHLEIKKKNLFELEMRDILLHHREFFGSCAPSNFYDTPEKSFKRIH 1380
Query: 5933 NS 5938
NS
Sbjct: 1381 NS 1382
>ref|YP_009431208.1| RNA polymerase beta' subunit (chloroplast) [Maianthemum bicolor]
gb|ASW26644.1| RNA polymerase beta' subunit (chloroplast) [Maianthemum bicolor]
Length = 1381
Score = 2655 bits (6882), Expect = 0.0
Identities = 1331/1381 (96%), Positives = 1341/1381 (97%)
Frame = +2
Query: 1796 MAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 1975
MAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID
Sbjct: 1 MAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60
Query: 1976 DLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2155
DLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2156 MTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2335
MTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2336 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTEKIFV 2515
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTEKIFV
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTEKIFV 240
Query: 2516 QTLIGRVLADDIYMGIRCIAARNQDIGVGLANRFITFRAQPIYIRTPFTCRNTSWICQLC 2695
QTLIGRVLADDIYMGIRCIAARNQDIG+GLANRFITFRAQPIYIRTPFTC+NTSWICQLC
Sbjct: 241 QTLIGRVLADDIYMGIRCIAARNQDIGIGLANRFITFRAQPIYIRTPFTCKNTSWICQLC 300
Query: 2696 YGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIK 2875
YGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLR AEHVRAPSNGKIK
Sbjct: 301 YGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIK 360
Query: 2876 FNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDILHSVNIPPKSLILVQNDQYVESEQVIA 3055
FNEYLVHPTRTRHGHPAFLCSIDLYVTI+SRDI+HSVNIPPKSLILVQNDQYVESEQVIA
Sbjct: 361 FNEYLVHPTRTRHGHPAFLCSIDLYVTIDSRDIIHSVNIPPKSLILVQNDQYVESEQVIA 420
Query: 3056 EIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWILGGGP 3235
EIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLW+L G P
Sbjct: 421 EIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWVLAGCP 480
Query: 3236 CRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYS 3415
CRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRV+HKLLDPSGTRKK+REILDYS
Sbjct: 481 CRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVKHKLLDPSGTRKKEREILDYS 540
Query: 3416 RLDRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPI 3595
RLDRIISNGHWNFIYP ILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPI
Sbjct: 541 RLDRIISNGHWNFIYPSILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPI 600
Query: 3596 NGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVD 3775
NGILRRNSILAYFDDPRYRRKSSGITKYGTAE+DSIVKKEDLIEYRGAKEFSPKYQMKVD
Sbjct: 601 NGILRRNSILAYFDDPRYRRKSSGITKYGTAEMDSIVKKEDLIEYRGAKEFSPKYQMKVD 660
Query: 3776 RFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIF 3955
RFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIF
Sbjct: 661 RFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIF 720
Query: 3956 SGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYVQRITPIKKKYFVLVRPV 4135
SGDIHFPGETDKISRHSGILIPPG IYVQRITPIKKKYFVLVRPV
Sbjct: 721 SGDIHFPGETDKISRHSGILIPPGTEKKNSKESKTKSKNGIYVQRITPIKKKYFVLVRPV 780
Query: 4136 VTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTCLVLN 4315
VTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTCLVLN
Sbjct: 781 VTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTCLVLN 840
Query: 4316 WDQEKNGSMEEVHASFVEVRANGLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDNGLDR 4495
WDQEKNGSMEEVHASFVEVRAN LIRDFIRIELVKSTISYTGKRYDTAGSGLIPDNGLDR
Sbjct: 841 WDQEKNGSMEEVHASFVEVRANDLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDNGLDR 900
Query: 4496 TNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLIILSSFNCFRVGPFNGSKYNNVAKE 4675
TNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSL ILSSFNCFRVGPFNGSKYNNVAKE
Sbjct: 901 TNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLRILSSFNCFRVGPFNGSKYNNVAKE 960
Query: 4676 SNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEVLKYC 4855
SNPITPI+GLLGPLGTIVPKIVNF SSYHLITHNQILLNKYWLLDNFKQTFQVLEVLKYC
Sbjct: 961 SNPITPIRGLLGPLGTIVPKIVNFSSSYHLITHNQILLNKYWLLDNFKQTFQVLEVLKYC 1020
Query: 4856 LIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKYGPRI 5035
LIDENRRIYNPSP NNIILNPSHLNWCFLHYNYCEETST ISIGQF CENI +FKYGP I
Sbjct: 1021 LIDENRRIYNPSPSNNIILNPSHLNWCFLHYNYCEETSTIISIGQFICENISIFKYGPHI 1080
Query: 5036 KKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQG 5215
KKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQG
Sbjct: 1081 KKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQG 1140
Query: 5216 LPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISLVNKI 5395
LPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTI QSRISLVNKI
Sbjct: 1141 LPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIVQSRISLVNKI 1200
Query: 5396 QKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRALDEAI 5575
QKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRALDEAI
Sbjct: 1201 QKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRALDEAI 1260
Query: 5576 CYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG 5755
CYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG
Sbjct: 1261 CYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG 1320
Query: 5756 TGFKKLVHRSRQDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFKRIHN 5935
TGFKKLVHRSRQDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFKRIHN
Sbjct: 1321 TGFKKLVHRSRQDIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFKRIHN 1380
Query: 5936 S 5938
S
Sbjct: 1381 S 1381
>gb|AEX94834.1| RNA polymerase beta' subunit (chloroplast) [Ruscus aculeatus]
Length = 1387
Score = 2647 bits (6861), Expect = 0.0
Identities = 1329/1387 (95%), Positives = 1340/1387 (96%), Gaps = 2/1387 (0%)
Frame = +2
Query: 1784 VEVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 1963
+EVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 1964 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2143
LGIDDLLTIPSKGWLVQDAEQQSF+LEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKGWLVQDAEQQSFLLEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2144 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2323
PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2324 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTE 2503
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTE
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTE 240
Query: 2504 KIFVQTLIGRVLADDIYMGIRCIAARNQDIGVGLANRFITFRAQPIYIRTPFTCRNTSWI 2683
KIF QTLIGRVLADDIYMGIRCIAARNQDIG+GLANRFITFRAQPIYIRTPFTCRNT WI
Sbjct: 241 KIFAQTLIGRVLADDIYMGIRCIAARNQDIGIGLANRFITFRAQPIYIRTPFTCRNTFWI 300
Query: 2684 CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSN 2863
CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLR AEHVRAPSN
Sbjct: 301 CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSN 360
Query: 2864 GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDILHSVNIPPKSLILVQNDQYVESE 3043
GKIKFNE+LVHPTRTRHGHPAFLCSIDLYVTIESRDI+HSVNIPPKSLILVQNDQYVESE
Sbjct: 361 GKIKFNEHLVHPTRTRHGHPAFLCSIDLYVTIESRDIIHSVNIPPKSLILVQNDQYVESE 420
Query: 3044 QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 3223
QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL
Sbjct: 421 QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 480
Query: 3224 GGGPCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREI 3403
GGPCRSSIVSFSLHKDQDQMNVHSFSVD+RYSSDLSITKDRVRHKLLDPSGTRKKDRE
Sbjct: 481 AGGPCRSSIVSFSLHKDQDQMNVHSFSVDKRYSSDLSITKDRVRHKLLDPSGTRKKDRES 540
Query: 3404 LDYSRLDRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISI 3583
LDYSRLDRIISNGHWNFIYP ILQENSDFLAKRRRNRF+IPLQYDQEREKELIPSFGISI
Sbjct: 541 LDYSRLDRIISNGHWNFIYPSILQENSDFLAKRRRNRFIIPLQYDQEREKELIPSFGISI 600
Query: 3584 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQ 3763
EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQ
Sbjct: 601 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQ 660
Query: 3764 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 3943
MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKS+E
Sbjct: 661 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSME 720
Query: 3944 LKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYVQRITPIKKKYFVL 4123
LKIFSGDIHFPGETDKISRHSGILIPPG IYVQRITPIKKKYFVL
Sbjct: 721 LKIFSGDIHFPGETDKISRHSGILIPPGTEKKNSKESKTKSKNGIYVQRITPIKKKYFVL 780
Query: 4124 VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC 4303
VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC
Sbjct: 781 VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC 840
Query: 4304 LVLNWDQEKNGSMEEVHASFVEVRANGLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN 4483
LVLNWDQEKNGSMEEVHASFVEVRAN LIRDFIRIELVKSTISYT KRYD GSGLIPDN
Sbjct: 841 LVLNWDQEKNGSMEEVHASFVEVRANDLIRDFIRIELVKSTISYTEKRYDMTGSGLIPDN 900
Query: 4484 GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLIILSSFNCFRVGPFNGSKYNN 4663
GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSL ILSSFNCFRVGPFNGSKYNN
Sbjct: 901 GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLRILSSFNCFRVGPFNGSKYNN 960
Query: 4664 VAKESNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 4843
V KESNPITPI+GLLGPLG IVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV
Sbjct: 961 VTKESNPITPIRGLLGPLGIIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 1020
Query: 4844 LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKY 5023
LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETST ISIGQF CEN CLFKY
Sbjct: 1021 LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTIISIGQFICENRCLFKY 1080
Query: 5024 GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD 5203
GP IKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD
Sbjct: 1081 GPHIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD 1140
Query: 5204 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISL 5383
ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISL
Sbjct: 1141 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISL 1200
Query: 5384 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 5563
VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL
Sbjct: 1201 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 1260
Query: 5564 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 5743
DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG+
Sbjct: 1261 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGV 1320
Query: 5744 IPVGTGFKKLVHRSRQ--DIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKS 5917
IPVGTGFKKLVHRSRQ +IHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKS
Sbjct: 1321 IPVGTGFKKLVHRSRQGKNIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKS 1380
Query: 5918 FKRIHNS 5938
FKRI NS
Sbjct: 1381 FKRIPNS 1387
>gb|AEX94835.1| RNA polymerase beta' subunit (chloroplast) [Sansevieria trifasciata]
Length = 1384
Score = 2621 bits (6793), Expect = 0.0
Identities = 1318/1387 (95%), Positives = 1330/1387 (95%), Gaps = 2/1387 (0%)
Frame = +2
Query: 1784 VEVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 1963
+EVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 1964 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2143
LGIDDLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2144 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2323
PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2324 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTE 2503
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTE
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTE 240
Query: 2504 KIFVQTLIGRVLADDIYMGIRCIAARNQDIGVGLANRFITFRAQPIYIRTPFTCRNTSWI 2683
KIF QTLIGRVLADDIYMGIRCIAARNQDIG+GLANRFIT RAQPIYIRTPFTCRNTSWI
Sbjct: 241 KIFAQTLIGRVLADDIYMGIRCIAARNQDIGIGLANRFITLRAQPIYIRTPFTCRNTSWI 300
Query: 2684 CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSN 2863
CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLR AEHVRAP+N
Sbjct: 301 CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPAN 360
Query: 2864 GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDILHSVNIPPKSLILVQNDQYVESE 3043
GKIKFNEYLVHP RTRHGHPAFLCSI+LYV IESRDI+HSVNIPPKSLILVQNDQYVESE
Sbjct: 361 GKIKFNEYLVHPIRTRHGHPAFLCSINLYVIIESRDIIHSVNIPPKSLILVQNDQYVESE 420
Query: 3044 QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 3223
QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL
Sbjct: 421 QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 480
Query: 3224 GGGPCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREI 3403
GGPCRSSIVSFSLHKDQDQ NVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDRE
Sbjct: 481 AGGPCRSSIVSFSLHKDQDQTNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDRES 540
Query: 3404 LDYSRLDRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISI 3583
LDYSRLDRIISNGHWNFIYP ILQENSDFLAKRRRN+F+IPLQYDQEREKELIPSFGISI
Sbjct: 541 LDYSRLDRIISNGHWNFIYPSILQENSDFLAKRRRNKFIIPLQYDQEREKELIPSFGISI 600
Query: 3584 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQ 3763
EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEV VKKEDLIEYRGAKEFSPKYQ
Sbjct: 601 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEV---VKKEDLIEYRGAKEFSPKYQ 657
Query: 3764 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 3943
MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE
Sbjct: 658 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 717
Query: 3944 LKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYVQRITPIKKKYFVL 4123
LKIFSGDIHFPGETDKISRHSGILIPPG WIYVQRITPIKKKYFVL
Sbjct: 718 LKIFSGDIHFPGETDKISRHSGILIPPGTEKKNSKESKTKSKNWIYVQRITPIKKKYFVL 777
Query: 4124 VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC 4303
VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC
Sbjct: 778 VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC 837
Query: 4304 LVLNWDQEKNGSMEEVHASFVEVRANGLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN 4483
LVLNW+QEKNGSMEEVHASFVEVRAN LIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN
Sbjct: 838 LVLNWNQEKNGSMEEVHASFVEVRANDLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN 897
Query: 4484 GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLIILSSFNCFRVGPFNGSKYNN 4663
LDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSL ILSSFNCF VGPFNGSKYNN
Sbjct: 898 RLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLRILSSFNCFGVGPFNGSKYNN 957
Query: 4664 VAKESNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 4843
V KESNPITPI+GLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWL DNFKQTFQVL+V
Sbjct: 958 VVKESNPITPIRGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLFDNFKQTFQVLQV 1017
Query: 4844 LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKY 5023
LKYCLIDEN+RIYNPSPCNNIILNPSHLNWCFLHYNYCE+T T ISIGQF CENICLFKY
Sbjct: 1018 LKYCLIDENKRIYNPSPCNNIILNPSHLNWCFLHYNYCEKTPTIISIGQFICENICLFKY 1077
Query: 5024 GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD 5203
GP IKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD
Sbjct: 1078 GPHIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD 1137
Query: 5204 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISL 5383
ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERI RVL IPWGFLIGAELTIAQSRISL
Sbjct: 1138 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERISRVLEIPWGFLIGAELTIAQSRISL 1197
Query: 5384 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 5563
VNKIQKVYRSQGVQIHNRHIEIIV QVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL
Sbjct: 1198 VNKIQKVYRSQGVQIHNRHIEIIVWQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 1257
Query: 5564 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 5743
DEAICYRAI LGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI
Sbjct: 1258 DEAICYRAIFLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 1317
Query: 5744 IPVGTGFKKLVHRSRQD--IHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKS 5917
IPVGTGFKKLVH SRQD IHLEIKKKNLFELEMRDILLHHREFFCSCAP NFYDTPEKS
Sbjct: 1318 IPVGTGFKKLVHPSRQDKNIHLEIKKKNLFELEMRDILLHHREFFCSCAPRNFYDTPEKS 1377
Query: 5918 FKRIHNS 5938
FKRIHNS
Sbjct: 1378 FKRIHNS 1384
>gb|AEX94827.1| RNA polymerase beta' subunit (chloroplast) [Cordyline australis]
Length = 1388
Score = 2617 bits (6784), Expect = 0.0
Identities = 1313/1387 (94%), Positives = 1333/1387 (96%), Gaps = 2/1387 (0%)
Frame = +2
Query: 1784 VEVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 1963
+EVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 1964 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2143
LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2144 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2323
PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2324 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTE 2503
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSP+NGVTE
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPQNGVTE 240
Query: 2504 KIFVQTLIGRVLADDIYMGIRCIAARNQDIGVGLANRFITFRAQPIYIRTPFTCRNTSWI 2683
KIFVQTLIGRVLADDIYMGIRCIAARNQDIG+GLANRFITFRAQPIYIRTPFTCRNTSWI
Sbjct: 241 KIFVQTLIGRVLADDIYMGIRCIAARNQDIGIGLANRFITFRAQPIYIRTPFTCRNTSWI 300
Query: 2684 CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSN 2863
CQLCYGRSPTHGDLVELGEA+GIIAGQSIGEPGTQLTLR AEHVRAPSN
Sbjct: 301 CQLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSN 360
Query: 2864 GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDILHSVNIPPKSLILVQNDQYVESE 3043
GKIKFNEYLV+PTRTRHGHPAFLCSIDLYVTIESRDI+HSVNIPPKSLILVQNDQYVESE
Sbjct: 361 GKIKFNEYLVYPTRTRHGHPAFLCSIDLYVTIESRDIIHSVNIPPKSLILVQNDQYVESE 420
Query: 3044 QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 3223
QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL
Sbjct: 421 QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 480
Query: 3224 GGGPCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREI 3403
GGPCRSSIVSFSLHKDQDQMNVHSFSVDERY SDLSIT DRVRHKLLDPSGT KKDREI
Sbjct: 481 AGGPCRSSIVSFSLHKDQDQMNVHSFSVDERYISDLSITNDRVRHKLLDPSGTGKKDREI 540
Query: 3404 LDYSRLDRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISI 3583
LDYSRLDRIISN HWNFIYP ILQENSDFLAK RRNRFLIPLQYDQEREKELIPSFGISI
Sbjct: 541 LDYSRLDRIISNSHWNFIYPSILQENSDFLAKGRRNRFLIPLQYDQEREKELIPSFGISI 600
Query: 3584 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQ 3763
EIPINGIL RNSILAYFDDPRYRRKSSGITKYGT EVDSIVKKEDLIEYRGAKEFSPK Q
Sbjct: 601 EIPINGILCRNSILAYFDDPRYRRKSSGITKYGTVEVDSIVKKEDLIEYRGAKEFSPKNQ 660
Query: 3764 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 3943
MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRV GLVRVERKKKSIE
Sbjct: 661 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVDGLVRVERKKKSIE 720
Query: 3944 LKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYVQRITPIKKKYFVL 4123
LKIFSGDIHFPGE DKISRHSGILIPPG WIYVQRITP KKKYFVL
Sbjct: 721 LKIFSGDIHFPGEADKISRHSGILIPPGTEKKNSKESKTKLKNWIYVQRITPTKKKYFVL 780
Query: 4124 VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC 4303
VRPVVTYEIADGINLAKLFPQDLLQEK+NVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC
Sbjct: 781 VRPVVTYEIADGINLAKLFPQDLLQEKDNVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC 840
Query: 4304 LVLNWDQEKNGSMEEVHASFVEVRANGLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN 4483
LVLNWDQEKNGS+EEVHASFVEVRAN LIRDFIRIELVKSTISYTGKRYDT GSGLIPDN
Sbjct: 841 LVLNWDQEKNGSIEEVHASFVEVRANDLIRDFIRIELVKSTISYTGKRYDTEGSGLIPDN 900
Query: 4484 GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLIILSSFNCFRVGPFNGSKYNN 4663
GLDRTNINPFYSKVKIPLV QHQ TIGTLLNRNK+ QSL ILSSFNCFRVGPFNGSKYNN
Sbjct: 901 GLDRTNINPFYSKVKIPLVIQHQRTIGTLLNRNKKCQSLRILSSFNCFRVGPFNGSKYNN 960
Query: 4664 VAKESNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 4843
VAKESNPITPI+ LLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV
Sbjct: 961 VAKESNPITPIRDLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 1020
Query: 4844 LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKY 5023
LKYCLIDENR+IYNP+PCNNIILNP HLNWCFLH+NYCEETST ISIGQFFCENICLFKY
Sbjct: 1021 LKYCLIDENRKIYNPNPCNNIILNPFHLNWCFLHHNYCEETSTIISIGQFFCENICLFKY 1080
Query: 5024 GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD 5203
GP K+SGQ+LIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD
Sbjct: 1081 GPHKKQSGQVLIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD 1140
Query: 5204 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISL 5383
ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPR+LGIPWGFLIGAELTIAQSRISL
Sbjct: 1141 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRILGIPWGFLIGAELTIAQSRISL 1200
Query: 5384 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 5563
VNKIQKVYRSQGVQIHNRHIEIIV+QVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL
Sbjct: 1201 VNKIQKVYRSQGVQIHNRHIEIIVQQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 1260
Query: 5564 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 5743
DEAICYRAILLGIT+ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI
Sbjct: 1261 DEAICYRAILLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 1320
Query: 5744 IPVGTGFKKLVHRSRQD--IHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKS 5917
IPVGTGFKKLVHRSRQ+ IHLEIKKKNLFELEMRDILLHHREFFCSCAPSNF+DTPEKS
Sbjct: 1321 IPVGTGFKKLVHRSRQNKSIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFHDTPEKS 1380
Query: 5918 FKRIHNS 5938
F RIHNS
Sbjct: 1381 FTRIHNS 1387
>ref|YP_009432547.1| RNA polymerase beta' subunit (chloroplast) [Cordyline indivisa]
gb|ATB18829.1| RNA polymerase beta' subunit (chloroplast) [Cordyline indivisa]
Length = 1384
Score = 2612 bits (6770), Expect = 0.0
Identities = 1310/1383 (94%), Positives = 1329/1383 (96%), Gaps = 2/1383 (0%)
Frame = +2
Query: 1796 MAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 1975
MAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID
Sbjct: 1 MAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60
Query: 1976 DLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2155
DLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2156 MTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2335
MTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2336 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTEKIFV 2515
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSP+NGVTEKIFV
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPQNGVTEKIFV 240
Query: 2516 QTLIGRVLADDIYMGIRCIAARNQDIGVGLANRFITFRAQPIYIRTPFTCRNTSWICQLC 2695
QTLIGRVLADDIYMGIRCIAARNQDIG+GLANRFITFRAQPIYIRTPFTCRNTSWICQLC
Sbjct: 241 QTLIGRVLADDIYMGIRCIAARNQDIGIGLANRFITFRAQPIYIRTPFTCRNTSWICQLC 300
Query: 2696 YGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIK 2875
YGRSPTHGDLVELGEA+GIIAGQSIGEPGTQLTLR AEHVRAPSNGKIK
Sbjct: 301 YGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIK 360
Query: 2876 FNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDILHSVNIPPKSLILVQNDQYVESEQVIA 3055
FNEYLV+PTRTRHGHPAFLCSIDLYVTIESRDI+HSVNIPPKSLILVQNDQYVESEQVIA
Sbjct: 361 FNEYLVYPTRTRHGHPAFLCSIDLYVTIESRDIIHSVNIPPKSLILVQNDQYVESEQVIA 420
Query: 3056 EIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWILGGGP 3235
EIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL GGP
Sbjct: 421 EIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWILAGGP 480
Query: 3236 CRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYS 3415
CRSSIVSFSLHKDQDQMNVHSFSVDERY SDLSIT DRVRHKLLDPSGT KKDREILDYS
Sbjct: 481 CRSSIVSFSLHKDQDQMNVHSFSVDERYISDLSITNDRVRHKLLDPSGTGKKDREILDYS 540
Query: 3416 RLDRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPI 3595
RLDRIISN HWNFIYP ILQENSDFLAK RRNRFLIPLQYDQEREKELIPSFGISIEIPI
Sbjct: 541 RLDRIISNSHWNFIYPSILQENSDFLAKGRRNRFLIPLQYDQEREKELIPSFGISIEIPI 600
Query: 3596 NGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVD 3775
NGIL RNSILAYFDDPRYRRKSSGITKYGT EVDSIVKKEDLIEYRGAKEFSPK QMKVD
Sbjct: 601 NGILCRNSILAYFDDPRYRRKSSGITKYGTVEVDSIVKKEDLIEYRGAKEFSPKNQMKVD 660
Query: 3776 RFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIF 3955
RFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRV GLVRVERKKKSIELKIF
Sbjct: 661 RFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVDGLVRVERKKKSIELKIF 720
Query: 3956 SGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYVQRITPIKKKYFVLVRPV 4135
SGDIHFPGE DKISRHSGILIPPG WIYVQRITP KKKYFVLVRPV
Sbjct: 721 SGDIHFPGEADKISRHSGILIPPGTEKKNSKESKTKLKNWIYVQRITPTKKKYFVLVRPV 780
Query: 4136 VTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTCLVLN 4315
VTYEIADGINLAKLFPQDLLQEK+NVQLRVVNYILYGNGKSIRGIYHTSIQLVRTCLVLN
Sbjct: 781 VTYEIADGINLAKLFPQDLLQEKDNVQLRVVNYILYGNGKSIRGIYHTSIQLVRTCLVLN 840
Query: 4316 WDQEKNGSMEEVHASFVEVRANGLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDNGLDR 4495
WDQEKNGS+EEVHASFVEVRAN LIRDFIRIELVKSTISYTGKRYDT GSGLIPDNGLDR
Sbjct: 841 WDQEKNGSIEEVHASFVEVRANDLIRDFIRIELVKSTISYTGKRYDTEGSGLIPDNGLDR 900
Query: 4496 TNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLIILSSFNCFRVGPFNGSKYNNVAKE 4675
TNINPFYSKVKIPLV QHQ TIGTLLNRNK+ QSL ILSSFNCFRVGPFNGSKYNNVAKE
Sbjct: 901 TNINPFYSKVKIPLVIQHQRTIGTLLNRNKKCQSLRILSSFNCFRVGPFNGSKYNNVAKE 960
Query: 4676 SNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEVLKYC 4855
SNPITPI+ LLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEVLKYC
Sbjct: 961 SNPITPIRDLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEVLKYC 1020
Query: 4856 LIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKYGPRI 5035
LIDENR+IYNP+PCNNIILNP HLNWCFLH+NYCEETST ISIGQFFCENICLFKYGP
Sbjct: 1021 LIDENRKIYNPNPCNNIILNPFHLNWCFLHHNYCEETSTIISIGQFFCENICLFKYGPHK 1080
Query: 5036 KKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQG 5215
K+SGQ+LIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQG
Sbjct: 1081 KQSGQVLIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQG 1140
Query: 5216 LPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISLVNKI 5395
LPKVEQILEVRSIGSISMNLERRVEGWNERIPR+LGIPWGFLIGAELTIAQSRISLVNKI
Sbjct: 1141 LPKVEQILEVRSIGSISMNLERRVEGWNERIPRILGIPWGFLIGAELTIAQSRISLVNKI 1200
Query: 5396 QKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRALDEAI 5575
QKVYRSQGVQIHNRHIEIIV+QVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRALDEAI
Sbjct: 1201 QKVYRSQGVQIHNRHIEIIVQQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRALDEAI 1260
Query: 5576 CYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG 5755
CYRAILLGIT+ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG
Sbjct: 1261 CYRAILLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG 1320
Query: 5756 TGFKKLVHRSRQD--IHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFKRI 5929
TGFKKLVHRSRQ+ IHLEIKKKNLFELEMRDILLHHREFFCSCAPSNF+DTPEKSF RI
Sbjct: 1321 TGFKKLVHRSRQNKSIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFHDTPEKSFTRI 1380
Query: 5930 HNS 5938
HNS
Sbjct: 1381 HNS 1383
>ref|YP_009335154.1| RNA polymerase beta subunit (chloroplast) [Hosta ventricosa]
gb|AEX94804.1| RNA polymerase beta' subunit (chloroplast) [Hosta ventricosa]
gb|APO12212.1| RNA polymerase beta subunit (chloroplast) [Hosta ventricosa]
Length = 1384
Score = 2607 bits (6756), Expect = 0.0
Identities = 1314/1387 (94%), Positives = 1327/1387 (95%), Gaps = 2/1387 (0%)
Frame = +2
Query: 1784 VEVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 1963
+EVLMAERADLVF+NKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERADLVFYNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 1964 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2143
LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2144 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2323
PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2324 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTE 2503
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIR ISVSPRNGVTE
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRGISVSPRNGVTE 240
Query: 2504 KIFVQTLIGRVLADDIYMGIRCIAARNQDIGVGLANRFITFRAQPIYIRTPFTCRNTSWI 2683
KIFVQTLIGRVLADDIYMGIRCIA RNQDIG+GLANRFITFRAQPIYIRTPFTCRNTSWI
Sbjct: 241 KIFVQTLIGRVLADDIYMGIRCIATRNQDIGIGLANRFITFRAQPIYIRTPFTCRNTSWI 300
Query: 2684 CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSN 2863
CQLCYGRSPTHGDLVELGEA+GIIAGQSIGEPGTQLTLR AEHVRAPSN
Sbjct: 301 CQLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSN 360
Query: 2864 GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDILHSVNIPPKSLILVQNDQYVESE 3043
GKIK NEYLVHPTRTRHGHPAFLCSIDLYVTIESRDI+HSVNIPPKSLILVQNDQYVESE
Sbjct: 361 GKIKLNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDIIHSVNIPPKSLILVQNDQYVESE 420
Query: 3044 QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 3223
QVIAEIRAGTSTFHFKE+VRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL
Sbjct: 421 QVIAEIRAGTSTFHFKEKVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 480
Query: 3224 GGGPCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREI 3403
GGPC SSIVSFSLHKDQDQMNVH FSVDE SDLSIT DRVRHKLLDPSG KKDREI
Sbjct: 481 AGGPCGSSIVSFSLHKDQDQMNVHFFSVDEIDISDLSITNDRVRHKLLDPSG--KKDREI 538
Query: 3404 LDYSRLDRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISI 3583
LDYSRLDRIISNGHWNFIYP ILQENSDFLAK+RRNRFLIPLQYDQEREKELIPSF ISI
Sbjct: 539 LDYSRLDRIISNGHWNFIYPSILQENSDFLAKKRRNRFLIPLQYDQEREKELIPSFNISI 598
Query: 3584 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQ 3763
EIPINGILRRNSILAYFDDPRYRRKSSGITKYGT E DSIVKKEDLIEYRGAKEFSPKYQ
Sbjct: 599 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTVEADSIVKKEDLIEYRGAKEFSPKYQ 658
Query: 3764 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 3943
MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE
Sbjct: 659 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 718
Query: 3944 LKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYVQRITPIKKKYFVL 4123
LKIFSGDIHFPGETDKISRHSGILIPPG WIYVQRITP KKKYFVL
Sbjct: 719 LKIFSGDIHFPGETDKISRHSGILIPPGTKKKNSKESKKWKN-WIYVQRITPTKKKYFVL 777
Query: 4124 VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC 4303
VRPVVTYEIADGINLAKLFPQDLLQEK+NVQLRVVNYILYGNGKSIRGI HTSIQLVRTC
Sbjct: 778 VRPVVTYEIADGINLAKLFPQDLLQEKDNVQLRVVNYILYGNGKSIRGISHTSIQLVRTC 837
Query: 4304 LVLNWDQEKNGSMEEVHASFVEVRANGLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN 4483
LVLNWDQEKNGS+EEVHASFVEVRAN LIRDFIRIELVKSTISYT KRYDTAGSGLIPDN
Sbjct: 838 LVLNWDQEKNGSIEEVHASFVEVRANDLIRDFIRIELVKSTISYTVKRYDTAGSGLIPDN 897
Query: 4484 GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLIILSSFNCFRVGPFNGSKYNN 4663
GLDRTNINPFYSK KIPLVTQHQ T+GTLLNRNKE QSLIILSSFNCFRVGPFNGSKYNN
Sbjct: 898 GLDRTNINPFYSKGKIPLVTQHQETVGTLLNRNKECQSLIILSSFNCFRVGPFNGSKYNN 957
Query: 4664 VAKESNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 4843
VAKESNPITPI+ LLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV
Sbjct: 958 VAKESNPITPIRDLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 1017
Query: 4844 LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKY 5023
LKYCLIDENRRIYNP PCNNIILNP HLNWCFLHYNYCEETST ISIGQF CENICLFKY
Sbjct: 1018 LKYCLIDENRRIYNPGPCNNIILNPFHLNWCFLHYNYCEETSTIISIGQFICENICLFKY 1077
Query: 5024 GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD 5203
GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETL EGDTLVTFIYEKSRSGD
Sbjct: 1078 GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLFEGDTLVTFIYEKSRSGD 1137
Query: 5204 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISL 5383
ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPR+LGIPWGFLIGAELTIAQSRISL
Sbjct: 1138 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRILGIPWGFLIGAELTIAQSRISL 1197
Query: 5384 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 5563
VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL
Sbjct: 1198 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 1257
Query: 5564 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 5743
DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI
Sbjct: 1258 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 1317
Query: 5744 IPVGTGFKKLVHRSRQD--IHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKS 5917
IPVGTGFKKLVHRSRQD IHLEIKKKNLFELEMRDILLHHREFFCSCAPSNF+DTPEK
Sbjct: 1318 IPVGTGFKKLVHRSRQDKNIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFHDTPEKL 1377
Query: 5918 FKRIHNS 5938
F RIHNS
Sbjct: 1378 FTRIHNS 1384
>ref|YP_009335069.1| RNA polymerase beta subunit (chloroplast) [Hesperoyucca whipplei]
gb|APO12127.1| RNA polymerase beta subunit (chloroplast) [Hesperoyucca whipplei]
Length = 1384
Score = 2605 bits (6752), Expect = 0.0
Identities = 1313/1387 (94%), Positives = 1326/1387 (95%), Gaps = 2/1387 (0%)
Frame = +2
Query: 1784 VEVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 1963
+EVLMAERADLVF+NKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERADLVFYNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 1964 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2143
LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2144 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2323
PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2324 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTE 2503
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIR ISVSPRNGVTE
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRGISVSPRNGVTE 240
Query: 2504 KIFVQTLIGRVLADDIYMGIRCIAARNQDIGVGLANRFITFRAQPIYIRTPFTCRNTSWI 2683
KIFVQTLIGRVLADDIYMGIRCIA RNQDIG+GLANRFITFRAQPIYIRTPFTCRNTSWI
Sbjct: 241 KIFVQTLIGRVLADDIYMGIRCIATRNQDIGIGLANRFITFRAQPIYIRTPFTCRNTSWI 300
Query: 2684 CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSN 2863
CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLR AEHVRAPSN
Sbjct: 301 CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSN 360
Query: 2864 GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDILHSVNIPPKSLILVQNDQYVESE 3043
GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDI+HSVNIPPKSLILVQNDQYVESE
Sbjct: 361 GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDIIHSVNIPPKSLILVQNDQYVESE 420
Query: 3044 QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 3223
QVIAEIRAGTSTFHFKE+VRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL
Sbjct: 421 QVIAEIRAGTSTFHFKEKVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 480
Query: 3224 GGGPCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREI 3403
GGPC SSIVSFSLHKDQDQMNVH FS+DE SDLSIT DRVRHKLLDPSG KKDREI
Sbjct: 481 AGGPCGSSIVSFSLHKDQDQMNVHFFSIDEINISDLSITNDRVRHKLLDPSG--KKDREI 538
Query: 3404 LDYSRLDRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISI 3583
LDYSRLDRIISNGHWNFIYP ILQENSDFLAK+RRNRFLIPLQYDQEREKELIPSF ISI
Sbjct: 539 LDYSRLDRIISNGHWNFIYPSILQENSDFLAKKRRNRFLIPLQYDQEREKELIPSFNISI 598
Query: 3584 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQ 3763
EIPINGILRRNSILAYFDDPRYRRKSSGITKYGT E DSIVKKEDLIEYRGAKEFSPKYQ
Sbjct: 599 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTVEADSIVKKEDLIEYRGAKEFSPKYQ 658
Query: 3764 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 3943
MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE
Sbjct: 659 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 718
Query: 3944 LKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYVQRITPIKKKYFVL 4123
LKIFSGDIHFPGETDKISRHSGILIPPG WIYVQRITP KKKYFVL
Sbjct: 719 LKIFSGDIHFPGETDKISRHSGILIPPGTEKKNSKESKKLKN-WIYVQRITPTKKKYFVL 777
Query: 4124 VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC 4303
VRPVVTYEIADGINLAKLFPQDLLQEK+NVQLRVVNYILYGNGKSIRGI HTSIQLVRTC
Sbjct: 778 VRPVVTYEIADGINLAKLFPQDLLQEKDNVQLRVVNYILYGNGKSIRGISHTSIQLVRTC 837
Query: 4304 LVLNWDQEKNGSMEEVHASFVEVRANGLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN 4483
LVLNWDQEKNGS+EEVHASFVEVRAN LIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN
Sbjct: 838 LVLNWDQEKNGSIEEVHASFVEVRANDLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN 897
Query: 4484 GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLIILSSFNCFRVGPFNGSKYNN 4663
GLDRTNINPFYSK KIPLVTQHQ T+GTLLNRNKE QSLIILSSFNCFRVGPFNGSKYNN
Sbjct: 898 GLDRTNINPFYSKGKIPLVTQHQETVGTLLNRNKECQSLIILSSFNCFRVGPFNGSKYNN 957
Query: 4664 VAKESNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 4843
AKESNPITPI+ LLGPLGTIVPKIVNFYSSY LITHNQILLNKYWLLDNFKQTFQVLEV
Sbjct: 958 AAKESNPITPIRDLLGPLGTIVPKIVNFYSSYRLITHNQILLNKYWLLDNFKQTFQVLEV 1017
Query: 4844 LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKY 5023
LKYCLIDENRRIYNP PCNNIILNP LNWCFLHYNYCEETST ISIGQF CENICLFKY
Sbjct: 1018 LKYCLIDENRRIYNPGPCNNIILNPFRLNWCFLHYNYCEETSTIISIGQFICENICLFKY 1077
Query: 5024 GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD 5203
GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETL EGDTLVTFIYEKSRSGD
Sbjct: 1078 GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLFEGDTLVTFIYEKSRSGD 1137
Query: 5204 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISL 5383
ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPR+LGIPWGFLIGAELTIAQSRISL
Sbjct: 1138 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRILGIPWGFLIGAELTIAQSRISL 1197
Query: 5384 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 5563
VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL
Sbjct: 1198 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 1257
Query: 5564 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 5743
DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI
Sbjct: 1258 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 1317
Query: 5744 IPVGTGFKKLVHRSRQD--IHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKS 5917
IPVGTGFKKLVHRSRQD IHLEIKKKNLFELEMRDILLHHREFFCSCAPSNF+DTPEK
Sbjct: 1318 IPVGTGFKKLVHRSRQDKNIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFHDTPEKL 1377
Query: 5918 FKRIHNS 5938
F RIHNS
Sbjct: 1378 FTRIHNS 1384
>ref|YP_009335237.1| RNA polymerase beta subunit (chloroplast) [Manfreda virginica]
gb|AEX94805.1| RNA polymerase beta' subunit (chloroplast) [Manfreda virginica]
gb|APO12295.1| RNA polymerase beta subunit (chloroplast) [Manfreda virginica]
Length = 1384
Score = 2598 bits (6735), Expect = 0.0
Identities = 1311/1387 (94%), Positives = 1323/1387 (95%), Gaps = 2/1387 (0%)
Frame = +2
Query: 1784 VEVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 1963
+EVLMAERAD VF+NKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERADPVFYNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 1964 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2143
LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2144 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2323
PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2324 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTE 2503
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIR ISVSPRNGVTE
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRGISVSPRNGVTE 240
Query: 2504 KIFVQTLIGRVLADDIYMGIRCIAARNQDIGVGLANRFITFRAQPIYIRTPFTCRNTSWI 2683
KIFVQTLIGRVLADDIYMGIRCIA RNQDIG+GLANRFITFRAQPIYIRTPFTCRNTSWI
Sbjct: 241 KIFVQTLIGRVLADDIYMGIRCIATRNQDIGIGLANRFITFRAQPIYIRTPFTCRNTSWI 300
Query: 2684 CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSN 2863
CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLR AEHVRAPSN
Sbjct: 301 CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSN 360
Query: 2864 GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDILHSVNIPPKSLILVQNDQYVESE 3043
GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDI+HSVNIPPKSLILVQNDQYVESE
Sbjct: 361 GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDIIHSVNIPPKSLILVQNDQYVESE 420
Query: 3044 QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 3223
QVIAEIRAGTSTFHFKE+ RKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL
Sbjct: 421 QVIAEIRAGTSTFHFKEKARKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 480
Query: 3224 GGGPCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREI 3403
GGPC SSIVSFSLHKDQDQMNVH FSVDE SDLSIT DRVRHKLLDPSG KKDREI
Sbjct: 481 AGGPCGSSIVSFSLHKDQDQMNVHFFSVDEIDISDLSITNDRVRHKLLDPSG--KKDREI 538
Query: 3404 LDYSRLDRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISI 3583
LDYSRLDRIISNGHWNFIYP ILQENSDFLAK+RRNRFLIPLQYDQEREKELIPSF ISI
Sbjct: 539 LDYSRLDRIISNGHWNFIYPSILQENSDFLAKKRRNRFLIPLQYDQEREKELIPSFNISI 598
Query: 3584 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQ 3763
EIPINGILRRNSILAYFDDPRYRRKSSGITKYGT E DSIVKKEDLIEYRGAKEFSPKYQ
Sbjct: 599 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTVEADSIVKKEDLIEYRGAKEFSPKYQ 658
Query: 3764 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 3943
MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE
Sbjct: 659 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 718
Query: 3944 LKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYVQRITPIKKKYFVL 4123
LKIFSGDIHFPGETDKISRHSGILIPPG IYVQRITP KKKYFVL
Sbjct: 719 LKIFSGDIHFPGETDKISRHSGILIPPGTEKTNSKESKKLKNG-IYVQRITPTKKKYFVL 777
Query: 4124 VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC 4303
VRPVVTYEIADGINL KLFPQDLLQEK+NVQLRVVNYILYGNGKSIRGI HTSIQLVRTC
Sbjct: 778 VRPVVTYEIADGINLEKLFPQDLLQEKDNVQLRVVNYILYGNGKSIRGISHTSIQLVRTC 837
Query: 4304 LVLNWDQEKNGSMEEVHASFVEVRANGLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN 4483
LVLNWDQEKNGS+EEVHASFVEVRAN LIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN
Sbjct: 838 LVLNWDQEKNGSIEEVHASFVEVRANDLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN 897
Query: 4484 GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLIILSSFNCFRVGPFNGSKYNN 4663
GLDRTNINPFYSK KIPLVTQHQ T+GTLLNRNKE QSLIILSSFNCFRVGPFNGSKYNN
Sbjct: 898 GLDRTNINPFYSKGKIPLVTQHQETVGTLLNRNKECQSLIILSSFNCFRVGPFNGSKYNN 957
Query: 4664 VAKESNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 4843
AKESNPITPI+ LLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV
Sbjct: 958 AAKESNPITPIRDLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 1017
Query: 4844 LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKY 5023
LKYCLIDENRRIYNP PCNNIILNP HLNWCFLHYNYCEETST ISIGQF CENICLFKY
Sbjct: 1018 LKYCLIDENRRIYNPGPCNNIILNPFHLNWCFLHYNYCEETSTIISIGQFICENICLFKY 1077
Query: 5024 GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD 5203
GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETL EGDTLVTFIYEKSRSGD
Sbjct: 1078 GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLFEGDTLVTFIYEKSRSGD 1137
Query: 5204 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISL 5383
ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPR+LGIPWGFLIGAELTIAQSRISL
Sbjct: 1138 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRILGIPWGFLIGAELTIAQSRISL 1197
Query: 5384 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 5563
VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL
Sbjct: 1198 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 1257
Query: 5564 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 5743
DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI
Sbjct: 1258 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 1317
Query: 5744 IPVGTGFKKLVHRSRQD--IHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKS 5917
IPVGTGFKKLVHRSRQD IHLEIKKKNLFELEMRDILLHHREFFCSCAPSNF+DTPE
Sbjct: 1318 IPVGTGFKKLVHRSRQDKNIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFHDTPENL 1377
Query: 5918 FKRIHNS 5938
F RIHNS
Sbjct: 1378 FTRIHNS 1384
>ref|YP_009335578.1| RNA polymerase beta subunit (chloroplast) [Yucca brevifolia]
ref|YP_009335748.1| RNA polymerase beta subunit (chloroplast) [Yucca queretaroensis]
ref|YP_009335833.1| RNA polymerase beta subunit (chloroplast) [Yucca schidigera]
gb|AAZ03984.1| RNA polymerase beta'' chain, partial (chloroplast) [Yucca schidigera]
gb|APO12722.1| RNA polymerase beta subunit (chloroplast) [Yucca brevifolia]
gb|APO12892.1| RNA polymerase beta subunit (chloroplast) [Yucca queretaroensis]
gb|APO12977.1| RNA polymerase beta subunit (chloroplast) [Yucca schidigera]
Length = 1384
Score = 2597 bits (6731), Expect = 0.0
Identities = 1311/1387 (94%), Positives = 1324/1387 (95%), Gaps = 2/1387 (0%)
Frame = +2
Query: 1784 VEVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 1963
+EVLMAERAD VF+NKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERADPVFYNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 1964 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2143
LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 2144 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2323
PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2324 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTE 2503
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIR ISVSPRNGVTE
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRGISVSPRNGVTE 240
Query: 2504 KIFVQTLIGRVLADDIYMGIRCIAARNQDIGVGLANRFITFRAQPIYIRTPFTCRNTSWI 2683
KIFVQTLIGRVLADDIY+GIRCIA RNQDIG+GLANRFITFRAQPIYIRTPFTCRNTSWI
Sbjct: 241 KIFVQTLIGRVLADDIYIGIRCIATRNQDIGIGLANRFITFRAQPIYIRTPFTCRNTSWI 300
Query: 2684 CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSN 2863
CQLCYGRSPTHG LVELGEAIGIIAGQSIGEPGTQLTLR AEHVRAPSN
Sbjct: 301 CQLCYGRSPTHGGLVELGEAIGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSN 360
Query: 2864 GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDILHSVNIPPKSLILVQNDQYVESE 3043
GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDI+HSVNIPPKSLILVQNDQYVESE
Sbjct: 361 GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDIIHSVNIPPKSLILVQNDQYVESE 420
Query: 3044 QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 3223
QVIAEIRAGTSTFHFKE+VRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL
Sbjct: 421 QVIAEIRAGTSTFHFKEKVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 480
Query: 3224 GGGPCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREI 3403
GGPC SSIVSFSLHKDQDQMNVH FSVDE SDLSIT DRVRHKLLDPSG KKDREI
Sbjct: 481 AGGPCGSSIVSFSLHKDQDQMNVHFFSVDEIDISDLSITNDRVRHKLLDPSG--KKDREI 538
Query: 3404 LDYSRLDRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISI 3583
LDYSRLDRIISNGHWNFIYP ILQENSDFLAK+RRNRFLIPLQYDQEREKELIPSF ISI
Sbjct: 539 LDYSRLDRIISNGHWNFIYPSILQENSDFLAKKRRNRFLIPLQYDQEREKELIPSFNISI 598
Query: 3584 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQ 3763
EIPINGILRRNSILAYFDDPRYRRKSSGI KYGT E DSIVKKEDLIEYRGAKEFSPKYQ
Sbjct: 599 EIPINGILRRNSILAYFDDPRYRRKSSGIIKYGTVEADSIVKKEDLIEYRGAKEFSPKYQ 658
Query: 3764 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 3943
MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE
Sbjct: 659 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 718
Query: 3944 LKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYVQRITPIKKKYFVL 4123
LKIFSGDIHFPGETDKISRHSGILIPPG IYVQRITP KKKYFVL
Sbjct: 719 LKIFSGDIHFPGETDKISRHSGILIPPGTEKTNSKESKKLKNG-IYVQRITPTKKKYFVL 777
Query: 4124 VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC 4303
VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGI HTSIQLVRTC
Sbjct: 778 VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGISHTSIQLVRTC 837
Query: 4304 LVLNWDQEKNGSMEEVHASFVEVRANGLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN 4483
LVLNWDQEKNGS+EEVHASFVEVRAN LIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN
Sbjct: 838 LVLNWDQEKNGSIEEVHASFVEVRANDLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN 897
Query: 4484 GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLIILSSFNCFRVGPFNGSKYNN 4663
GLDRTNINPFYSK KIPLVTQHQ T+GTLLNRNKE QSLIILSSFNCFRVGPFNG KYNN
Sbjct: 898 GLDRTNINPFYSKGKIPLVTQHQETVGTLLNRNKECQSLIILSSFNCFRVGPFNGPKYNN 957
Query: 4664 VAKESNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 4843
VAKESNPITPI+ LLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV
Sbjct: 958 VAKESNPITPIRDLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 1017
Query: 4844 LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKY 5023
LKYCLIDENRRIYNP PCNNIILNP HLNWCFLHYNYCEETST ISIGQF CENICLFKY
Sbjct: 1018 LKYCLIDENRRIYNPGPCNNIILNPFHLNWCFLHYNYCEETSTIISIGQFICENICLFKY 1077
Query: 5024 GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD 5203
GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETL EGDTLVTFIYEKSRSGD
Sbjct: 1078 GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLFEGDTLVTFIYEKSRSGD 1137
Query: 5204 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISL 5383
ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPR+LGIPWGFLIGAELTIAQSRISL
Sbjct: 1138 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRILGIPWGFLIGAELTIAQSRISL 1197
Query: 5384 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 5563
VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSN+FLPGELIGLLRAERAGRAL
Sbjct: 1198 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNLFLPGELIGLLRAERAGRAL 1257
Query: 5564 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 5743
DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI
Sbjct: 1258 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 1317
Query: 5744 IPVGTGFKKLVHRSRQD--IHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKS 5917
IPVGTGFKKLVHRSRQD IHLEIKKKNLFELEMRDILLHHREFFCSCAPSNF+DTPEK
Sbjct: 1318 IPVGTGFKKLVHRSRQDKNIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFHDTPEKL 1377
Query: 5918 FKRIHNS 5938
F RIHNS
Sbjct: 1378 FTRIHNS 1384
>ref|YP_009045556.1| RNA polymerase betasubunit (chloroplast) [Cypripedium macranthos]
gb|AHI16739.1| RNA polymerase betasubunit (chloroplast) (chloroplast) [Cypripedium
macranthos]
Length = 1380
Score = 2597 bits (6731), Expect = 0.0
Identities = 1309/1383 (94%), Positives = 1321/1383 (95%), Gaps = 2/1383 (0%)
Frame = +2
Query: 1796 MAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 1975
MAERADLVF+NKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID
Sbjct: 1 MAERADLVFYNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60
Query: 1976 DLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2155
DLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2156 MTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2335
MTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2336 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTEKIFV 2515
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIR ISVSPRNGVTEKIFV
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRGISVSPRNGVTEKIFV 240
Query: 2516 QTLIGRVLADDIYMGIRCIAARNQDIGVGLANRFITFRAQPIYIRTPFTCRNTSWICQLC 2695
QTLIGRVLADDIYMGIRCIA RNQDIG+GLANRFITFRAQPIYIRTPFTCRNTSWICQLC
Sbjct: 241 QTLIGRVLADDIYMGIRCIATRNQDIGIGLANRFITFRAQPIYIRTPFTCRNTSWICQLC 300
Query: 2696 YGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIK 2875
YGRSPTHGDLVELGEA+GIIAGQSIGEPGTQLTLR AEHVRAPSNGKIK
Sbjct: 301 YGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIK 360
Query: 2876 FNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDILHSVNIPPKSLILVQNDQYVESEQVIA 3055
NEYLVHPTRTRHGHPAFLCSIDLYVTIESRDI+HSVNIPPKSLILVQNDQYVESEQVIA
Sbjct: 361 LNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDIIHSVNIPPKSLILVQNDQYVESEQVIA 420
Query: 3056 EIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWILGGGP 3235
EIRAGTSTFHFKE+VRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL GGP
Sbjct: 421 EIRAGTSTFHFKEKVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWILAGGP 480
Query: 3236 CRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYS 3415
C SSIVSFSLHKDQDQMNVH FSVDE SDLSIT DRVRHKLLDPSG KKDREILDYS
Sbjct: 481 CGSSIVSFSLHKDQDQMNVHFFSVDEIDISDLSITNDRVRHKLLDPSG--KKDREILDYS 538
Query: 3416 RLDRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPI 3595
RLDRIISNGHWNFIYP ILQENSDFLAK+RRNRFLIPLQYDQEREKELIPSF ISIEIPI
Sbjct: 539 RLDRIISNGHWNFIYPSILQENSDFLAKKRRNRFLIPLQYDQEREKELIPSFNISIEIPI 598
Query: 3596 NGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVD 3775
NGILRRNSILAYFDDPRYRRKSSGITKYGT E DSIVKKEDLIEYRGAKEFSPKYQMKVD
Sbjct: 599 NGILRRNSILAYFDDPRYRRKSSGITKYGTVEADSIVKKEDLIEYRGAKEFSPKYQMKVD 658
Query: 3776 RFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIF 3955
RFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIF
Sbjct: 659 RFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIF 718
Query: 3956 SGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYVQRITPIKKKYFVLVRPV 4135
SGDIHFPGETDKISRHSGILIPPG WIYVQRITP KKKYFVLVRPV
Sbjct: 719 SGDIHFPGETDKISRHSGILIPPGTKKKNSKESKKCKN-WIYVQRITPTKKKYFVLVRPV 777
Query: 4136 VTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTCLVLN 4315
VTYEIADGINLAKLFPQDLLQEK+NVQLRVVNYILYGNGKSIRGI HTSIQLVRTCLVLN
Sbjct: 778 VTYEIADGINLAKLFPQDLLQEKDNVQLRVVNYILYGNGKSIRGISHTSIQLVRTCLVLN 837
Query: 4316 WDQEKNGSMEEVHASFVEVRANGLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDNGLDR 4495
WDQEKNGS+EEVHASFVEVRAN LIRDFIRIELVKSTISYT KRYDTAGSGLIPDNGLDR
Sbjct: 838 WDQEKNGSIEEVHASFVEVRANDLIRDFIRIELVKSTISYTVKRYDTAGSGLIPDNGLDR 897
Query: 4496 TNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLIILSSFNCFRVGPFNGSKYNNVAKE 4675
TNINPFYSK KIPLVTQHQ T+GTLLNRNKE QSLIILSSFNCFRVGPFNGSKYNNVAKE
Sbjct: 898 TNINPFYSKGKIPLVTQHQETVGTLLNRNKECQSLIILSSFNCFRVGPFNGSKYNNVAKE 957
Query: 4676 SNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEVLKYC 4855
SNPITPI+ LLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEVLKYC
Sbjct: 958 SNPITPIRDLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEVLKYC 1017
Query: 4856 LIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKYGPRI 5035
LIDENRRIYNP PCNNIILNP HLNWCF HYNYCEETST ISIGQF CENICLFKYGPRI
Sbjct: 1018 LIDENRRIYNPGPCNNIILNPFHLNWCFPHYNYCEETSTIISIGQFICENICLFKYGPRI 1077
Query: 5036 KKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQG 5215
KKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETL EGDTLVTFIYEKSRSGDITQG
Sbjct: 1078 KKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLFEGDTLVTFIYEKSRSGDITQG 1137
Query: 5216 LPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISLVNKI 5395
LPKVEQILEVRSIGSISMNLERRVEGWNERIPR+LGIPWGFLIGAELTIAQSRISLVNKI
Sbjct: 1138 LPKVEQILEVRSIGSISMNLERRVEGWNERIPRILGIPWGFLIGAELTIAQSRISLVNKI 1197
Query: 5396 QKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRALDEAI 5575
QKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGR LDEAI
Sbjct: 1198 QKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRVLDEAI 1257
Query: 5576 CYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG 5755
CYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG
Sbjct: 1258 CYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG 1317
Query: 5756 TGFKKLVHRSRQD--IHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFKRI 5929
TGFKKLVHRSRQD IHLEIKKKNLFELEMRDILLHHREFFCSCAPSNF+DTPEK F RI
Sbjct: 1318 TGFKKLVHRSRQDKNIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFHDTPEKLFTRI 1377
Query: 5930 HNS 5938
HNS
Sbjct: 1378 HNS 1380
>ref|YP_009432631.1| RNA polymerase beta' subunit (chloroplast) [Hosta minor]
gb|ATB18912.1| RNA polymerase beta' subunit (chloroplast) [Hosta minor]
Length = 1380
Score = 2597 bits (6730), Expect = 0.0
Identities = 1309/1383 (94%), Positives = 1321/1383 (95%), Gaps = 2/1383 (0%)
Frame = +2
Query: 1796 MAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 1975
MAERADLVF+NKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID
Sbjct: 1 MAERADLVFYNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60
Query: 1976 DLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 2155
DLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 2156 MTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 2335
MTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 2336 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTEKIFV 2515
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIR ISVSPRNGVTEKIFV
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRGISVSPRNGVTEKIFV 240
Query: 2516 QTLIGRVLADDIYMGIRCIAARNQDIGVGLANRFITFRAQPIYIRTPFTCRNTSWICQLC 2695
QTLIGRVLADDIYMGIRCIA RNQDIG+GLANRFITFRAQPIYIRTPFTCRNTSWICQLC
Sbjct: 241 QTLIGRVLADDIYMGIRCIATRNQDIGIGLANRFITFRAQPIYIRTPFTCRNTSWICQLC 300
Query: 2696 YGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIK 2875
YGRSPTHGDLVELGEA+GIIAGQSIGEPGTQLTLR AEHVRAPSNGKIK
Sbjct: 301 YGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIK 360
Query: 2876 FNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDILHSVNIPPKSLILVQNDQYVESEQVIA 3055
NEYLVHPTRTRHGHPAFLCSIDLYVTIESRDI+HSVNIPPKSLILVQNDQYVESEQVIA
Sbjct: 361 LNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDIIHSVNIPPKSLILVQNDQYVESEQVIA 420
Query: 3056 EIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWILGGGP 3235
EIRAGTSTFHFKE+VRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL GGP
Sbjct: 421 EIRAGTSTFHFKEKVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWILAGGP 480
Query: 3236 CRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREILDYS 3415
C SSIVSFSLHKDQDQMNVH FSVDE SDLSIT DRVRHKLLDPSG KKDREILDYS
Sbjct: 481 CGSSIVSFSLHKDQDQMNVHFFSVDEIDISDLSITNDRVRHKLLDPSG--KKDREILDYS 538
Query: 3416 RLDRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISIEIPI 3595
RLDRIISNGHWNFIYP ILQENSDFLAK+RRNRFLIPLQYDQEREKELIPSF ISIEIPI
Sbjct: 539 RLDRIISNGHWNFIYPSILQENSDFLAKKRRNRFLIPLQYDQEREKELIPSFNISIEIPI 598
Query: 3596 NGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQMKVD 3775
NGILRRNSILAYFDDPRYRRKSSGITKYGT E DSIVKKEDLIEYRGAKEFSPKYQMKVD
Sbjct: 599 NGILRRNSILAYFDDPRYRRKSSGITKYGTVEADSIVKKEDLIEYRGAKEFSPKYQMKVD 658
Query: 3776 RFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIF 3955
RFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIF
Sbjct: 659 RFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIELKIF 718
Query: 3956 SGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYVQRITPIKKKYFVLVRPV 4135
SGDIHFPGETDKISRHSGILIPPG WIYVQRITP KKKYFVLVRPV
Sbjct: 719 SGDIHFPGETDKISRHSGILIPPGTKKKNSKESKKWKN-WIYVQRITPTKKKYFVLVRPV 777
Query: 4136 VTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTCLVLN 4315
VTYEIADGINLAKLFPQDLLQEK+NVQLRVVNYILYGNGKSIRGI HTSIQLVRTCLVLN
Sbjct: 778 VTYEIADGINLAKLFPQDLLQEKDNVQLRVVNYILYGNGKSIRGISHTSIQLVRTCLVLN 837
Query: 4316 WDQEKNGSMEEVHASFVEVRANGLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDNGLDR 4495
WDQEKNGS+EEVHASFVEVRAN LIRDFIRIELVKSTISYT KRYDTAGSGLIPDNGLDR
Sbjct: 838 WDQEKNGSIEEVHASFVEVRANDLIRDFIRIELVKSTISYTVKRYDTAGSGLIPDNGLDR 897
Query: 4496 TNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLIILSSFNCFRVGPFNGSKYNNVAKE 4675
TNINPFYSK KIPLVTQHQ T+GTLLNRNKE QSLIILSSFNCFRVGPFNGSKYNNVAKE
Sbjct: 898 TNINPFYSKGKIPLVTQHQETVGTLLNRNKECQSLIILSSFNCFRVGPFNGSKYNNVAKE 957
Query: 4676 SNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEVLKYC 4855
SNPITPI+ LLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLL NFKQTFQVLEVLKYC
Sbjct: 958 SNPITPIRDLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLANFKQTFQVLEVLKYC 1017
Query: 4856 LIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKYGPRI 5035
LIDENRRIYNP PCNNIILNP HLNWCFLHYNYCEETST ISIGQF CENICLFKYGPRI
Sbjct: 1018 LIDENRRIYNPGPCNNIILNPFHLNWCFLHYNYCEETSTIISIGQFICENICLFKYGPRI 1077
Query: 5036 KKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQG 5215
KKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETL EGDTLVTFIYEKSRSGDITQG
Sbjct: 1078 KKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLFEGDTLVTFIYEKSRSGDITQG 1137
Query: 5216 LPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISLVNKI 5395
LPKVEQILEVRSIGSISMNLERRVEGWNERIPR+LGIPWGFLIGAELTIAQSRISLVNKI
Sbjct: 1138 LPKVEQILEVRSIGSISMNLERRVEGWNERIPRILGIPWGFLIGAELTIAQSRISLVNKI 1197
Query: 5396 QKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRALDEAI 5575
QKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGL RAERAGRALDEAI
Sbjct: 1198 QKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLFRAERAGRALDEAI 1257
Query: 5576 CYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG 5755
CYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG
Sbjct: 1258 CYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG 1317
Query: 5756 TGFKKLVHRSRQD--IHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKSFKRI 5929
TGFKKLVHRSRQD IHLEIKKKNLFELEMRDILLHHREFFCSCAPSNF+DTPEK F RI
Sbjct: 1318 TGFKKLVHRSRQDKNIHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFHDTPEKLFTRI 1377
Query: 5930 HNS 5938
HNS
Sbjct: 1378 HNS 1380
>ref|YP_009334818.1| RNA polymerase beta subunit (chloroplast) [Hesperaloe campanulata]
gb|APO11876.1| RNA polymerase beta subunit (chloroplast) [Hesperaloe campanulata]
Length = 1384
Score = 2596 bits (6728), Expect = 0.0
Identities = 1306/1387 (94%), Positives = 1323/1387 (95%), Gaps = 2/1387 (0%)
Frame = +2
Query: 1784 VEVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 1963
+EVLMAERADLVF+NKVIDGTAMKRLISRLIDHFGM YTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERADLVFYNKVIDGTAMKRLISRLIDHFGMTYTSHILDQVKTLGFQQATATSIS 60
Query: 1964 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 2143
LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQS+EIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSVEIWYATSEYLRQEMN 120
Query: 2144 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 2323
PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPSNPVHLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 2324 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRAISVSPRNGVTE 2503
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIR ISVSPRNGVTE
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIIVRRTDCGTIRGISVSPRNGVTE 240
Query: 2504 KIFVQTLIGRVLADDIYMGIRCIAARNQDIGVGLANRFITFRAQPIYIRTPFTCRNTSWI 2683
KIFVQTLIGRVLADDIYMGIRCIA RNQDIG+GLANRFITFRAQPIYIRTPFTCRNTSW+
Sbjct: 241 KIFVQTLIGRVLADDIYMGIRCIATRNQDIGIGLANRFITFRAQPIYIRTPFTCRNTSWV 300
Query: 2684 CQLCYGRSPTHGDLVELGEAIGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSN 2863
CQLCYGRSPTHGDLVELGEA+GIIAGQSIGEPGTQLTLR AEHVRAPSN
Sbjct: 301 CQLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSN 360
Query: 2864 GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDILHSVNIPPKSLILVQNDQYVESE 3043
GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRD +HSVNIPPKSLILVQNDQYVESE
Sbjct: 361 GKIKFNEYLVHPTRTRHGHPAFLCSIDLYVTIESRDTIHSVNIPPKSLILVQNDQYVESE 420
Query: 3044 QVIAEIRAGTSTFHFKERVRKHIYSESEGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWIL 3223
QVIAEIRAGTSTFHFKE+VRKHIYSESEGEMHWS DVYHAPEYTYSNVHLLPKTSHLWIL
Sbjct: 421 QVIAEIRAGTSTFHFKEKVRKHIYSESEGEMHWSIDVYHAPEYTYSNVHLLPKTSHLWIL 480
Query: 3224 GGGPCRSSIVSFSLHKDQDQMNVHSFSVDERYSSDLSITKDRVRHKLLDPSGTRKKDREI 3403
GGPC SSIVSFSLHKDQDQMNVH FSVDE SDLSIT DRVRHKLLDPSG KKDREI
Sbjct: 481 AGGPCGSSIVSFSLHKDQDQMNVHFFSVDEIDISDLSITNDRVRHKLLDPSG--KKDREI 538
Query: 3404 LDYSRLDRIISNGHWNFIYPLILQENSDFLAKRRRNRFLIPLQYDQEREKELIPSFGISI 3583
LDYSRLDRIISNGHWNFIYP ILQENSDFLAK+RRNRFLIPLQYDQEREKELIPSF ISI
Sbjct: 539 LDYSRLDRIISNGHWNFIYPSILQENSDFLAKKRRNRFLIPLQYDQEREKELIPSFNISI 598
Query: 3584 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTAEVDSIVKKEDLIEYRGAKEFSPKYQ 3763
EIPINGILRRNSILAYFDDPRYRRKSSGITKYGT E DSIVKKEDLIEYRGAKEFSPKYQ
Sbjct: 599 EIPINGILRRNSILAYFDDPRYRRKSSGITKYGTVEADSIVKKEDLIEYRGAKEFSPKYQ 658
Query: 3764 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 3943
MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE
Sbjct: 659 MKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVGGLVRVERKKKSIE 718
Query: 3944 LKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYVQRITPIKKKYFVL 4123
LKIFSGDIHFPGETDKISRHSGILIPPG WIYVQRITP KKKYFVL
Sbjct: 719 LKIFSGDIHFPGETDKISRHSGILIPPGTEKKNSKESKKLKN-WIYVQRITPTKKKYFVL 777
Query: 4124 VRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIRGIYHTSIQLVRTC 4303
VRPVVTYEIADGINLAKLFPQDLLQEK+NVQLRVVNYILYGNGKSIRGI HTSIQLVRTC
Sbjct: 778 VRPVVTYEIADGINLAKLFPQDLLQEKDNVQLRVVNYILYGNGKSIRGISHTSIQLVRTC 837
Query: 4304 LVLNWDQEKNGSMEEVHASFVEVRANGLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN 4483
LVLNWDQEKNGS+EEVHASFVEVRAN LIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN
Sbjct: 838 LVLNWDQEKNGSIEEVHASFVEVRANDLIRDFIRIELVKSTISYTGKRYDTAGSGLIPDN 897
Query: 4484 GLDRTNINPFYSKVKIPLVTQHQGTIGTLLNRNKEGQSLIILSSFNCFRVGPFNGSKYNN 4663
GLDRTNINPFYSK KIPLVTQHQ T+GTLLNRNKE QSLIILSSFNCFRVGPFNGSKYNN
Sbjct: 898 GLDRTNINPFYSKGKIPLVTQHQETVGTLLNRNKECQSLIILSSFNCFRVGPFNGSKYNN 957
Query: 4664 VAKESNPITPIKGLLGPLGTIVPKIVNFYSSYHLITHNQILLNKYWLLDNFKQTFQVLEV 4843
VAKESNPITPI+ LLGPLGTIVPKIVNFYSSYHLIT NQILLNKYWLLDNFKQTFQ+LEV
Sbjct: 958 VAKESNPITPIRDLLGPLGTIVPKIVNFYSSYHLITQNQILLNKYWLLDNFKQTFQILEV 1017
Query: 4844 LKYCLIDENRRIYNPSPCNNIILNPSHLNWCFLHYNYCEETSTTISIGQFFCENICLFKY 5023
LKYCLIDENRRIYNP PCNNIILNP LNWCFLHYNYCEETST ISIGQF CENICLFKY
Sbjct: 1018 LKYCLIDENRRIYNPGPCNNIILNPFRLNWCFLHYNYCEETSTIISIGQFICENICLFKY 1077
Query: 5024 GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGD 5203
GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETL EGDTLVTFIYEKSRSGD
Sbjct: 1078 GPRIKKSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLFEGDTLVTFIYEKSRSGD 1137
Query: 5204 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRVLGIPWGFLIGAELTIAQSRISL 5383
ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPR+LGIPWGFLIGAELTIAQSRISL
Sbjct: 1138 ITQGLPKVEQILEVRSIGSISMNLERRVEGWNERIPRILGIPWGFLIGAELTIAQSRISL 1197
Query: 5384 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 5563
VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL
Sbjct: 1198 VNKIQKVYRSQGVQIHNRHIEIIVRQVTSKVLVSEDGMSNVFLPGELIGLLRAERAGRAL 1257
Query: 5564 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 5743
DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI
Sbjct: 1258 DEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 1317
Query: 5744 IPVGTGFKKLVHRSRQD--IHLEIKKKNLFELEMRDILLHHREFFCSCAPSNFYDTPEKS 5917
IPVGTGFKKLVH SRQD IHLEIKKKN+FELEMRDILLHHREFFCSCAPSNF+DTPEK
Sbjct: 1318 IPVGTGFKKLVHPSRQDKNIHLEIKKKNIFELEMRDILLHHREFFCSCAPSNFHDTPEKL 1377
Query: 5918 FKRIHNS 5938
F RIHNS
Sbjct: 1378 FTRIHNS 1384