BLASTX nr result
ID: Ophiopogon24_contig00000546
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon24_contig00000546
(464 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_020270527.1| DNA repair helicase XPB1-like [Asparagus off... 117 2e-31
ref|XP_020270223.1| DNA repair helicase XPB1 isoform X2 [Asparag... 118 8e-28
ref|XP_020270221.1| DNA repair helicase XPB1 isoform X1 [Asparag... 118 8e-28
gb|EPS57390.1| hypothetical protein M569_17428, partial [Genlise... 98 8e-24
ref|XP_010494234.1| PREDICTED: DNA repair helicase XPB1-like [Ca... 98 3e-23
ref|XP_021820838.1| DNA repair helicase XPB1 [Prunus avium] 104 4e-23
ref|XP_008238934.1| PREDICTED: DNA repair helicase XPB1 [Prunus ... 104 4e-23
ref|XP_020419876.1| DNA repair helicase XPB1 [Prunus persica] >g... 103 1e-22
gb|PKI50940.1| hypothetical protein CRG98_028670, partial [Punic... 99 2e-22
ref|XP_009792962.1| PREDICTED: DNA repair helicase XPB1-like [Ni... 94 4e-22
gb|PIN19680.1| RNA polymerase II transcription initiation [Handr... 101 7e-22
ref|XP_009375027.1| PREDICTED: DNA repair helicase XPB1 [Pyrus x... 101 7e-22
ref|XP_023887751.1| general transcription and DNA repair factor ... 100 1e-21
gb|POE67044.1| dna repair helicase xpb1 [Quercus suber] 100 1e-21
ref|XP_023881498.1| general transcription and DNA repair factor ... 100 1e-21
gb|POE74164.1| dna repair helicase xpb1 [Quercus suber] 100 1e-21
ref|XP_011073070.1| DNA repair helicase XPB1 [Sesamum indicum] 100 2e-21
ref|XP_021866493.1| DNA repair helicase XPB1-like [Spinacia oler... 100 2e-21
ref|XP_024031230.1| general transcription and DNA repair factor ... 100 2e-21
ref|XP_009386121.1| PREDICTED: DNA repair helicase XPB1-like [Mu... 100 2e-21
>ref|XP_020270527.1| DNA repair helicase XPB1-like [Asparagus officinalis]
Length = 96
Score = 117 bits (293), Expect = 2e-31
Identities = 55/74 (74%), Positives = 62/74 (83%)
Frame = -3
Query: 297 IAEEKELDF*GEDSDDERRRGEMLKNDFTKLELKPDHTNMPLWVCANGKIFLETFSPLHK 118
+ EE+EL F GEDSDD+RRRGE KNDFTKLELKPDH N PLW C +G+IFLETFSPL+K
Sbjct: 23 VVEEEELYF-GEDSDDDRRRGETKKNDFTKLELKPDHVNRPLWACGDGRIFLETFSPLYK 81
Query: 117 *AYDFFIAITKPVC 76
AYDF IAI +PVC
Sbjct: 82 QAYDFLIAIAEPVC 95
>ref|XP_020270223.1| DNA repair helicase XPB1 isoform X2 [Asparagus officinalis]
ref|XP_020270224.1| DNA repair helicase XPB1 isoform X2 [Asparagus officinalis]
Length = 765
Score = 118 bits (295), Expect = 8e-28
Identities = 56/79 (70%), Positives = 64/79 (81%)
Frame = -3
Query: 297 IAEEKELDF*GEDSDDERRRGEMLKNDFTKLELKPDHTNMPLWVCANGKIFLETFSPLHK 118
+ EE+EL F GEDSDD+RRRGE KNDFTKLELKPDH N PLW C +G+IFLETFSPL+K
Sbjct: 22 VVEEEELYF-GEDSDDDRRRGETKKNDFTKLELKPDHVNRPLWACGDGRIFLETFSPLYK 80
Query: 117 *AYDFFIAITKPVCSLNTM 61
AYDF IAI +PVC +M
Sbjct: 81 QAYDFLIAIAEPVCRPESM 99
>ref|XP_020270221.1| DNA repair helicase XPB1 isoform X1 [Asparagus officinalis]
ref|XP_020270222.1| DNA repair helicase XPB1 isoform X1 [Asparagus officinalis]
gb|ONK66043.1| uncharacterized protein A4U43_C06F3580 [Asparagus officinalis]
Length = 766
Score = 118 bits (295), Expect = 8e-28
Identities = 56/79 (70%), Positives = 64/79 (81%)
Frame = -3
Query: 297 IAEEKELDF*GEDSDDERRRGEMLKNDFTKLELKPDHTNMPLWVCANGKIFLETFSPLHK 118
+ EE+EL F GEDSDD+RRRGE KNDFTKLELKPDH N PLW C +G+IFLETFSPL+K
Sbjct: 23 VVEEEELYF-GEDSDDDRRRGETKKNDFTKLELKPDHVNRPLWACGDGRIFLETFSPLYK 81
Query: 117 *AYDFFIAITKPVCSLNTM 61
AYDF IAI +PVC +M
Sbjct: 82 QAYDFLIAIAEPVCRPESM 100
>gb|EPS57390.1| hypothetical protein M569_17428, partial [Genlisea aurea]
Length = 81
Score = 97.8 bits (242), Expect = 8e-24
Identities = 44/63 (69%), Positives = 51/63 (80%)
Frame = -3
Query: 264 EDSDDERRRGEMLKNDFTKLELKPDHTNMPLWVCANGKIFLETFSPLHK*AYDFFIAITK 85
+D DD+ R GE K DFTKLELKPDH N PLW C++G+IFLETFSPL+K AYDF IAI +
Sbjct: 19 DDFDDDPRDGEGRKRDFTKLELKPDHDNRPLWACSDGRIFLETFSPLYKQAYDFLIAIAE 78
Query: 84 PVC 76
PVC
Sbjct: 79 PVC 81
>ref|XP_010494234.1| PREDICTED: DNA repair helicase XPB1-like [Camelina sativa]
Length = 127
Score = 97.8 bits (242), Expect = 3e-23
Identities = 45/72 (62%), Positives = 55/72 (76%)
Frame = -3
Query: 276 DF*GEDSDDERRRGEMLKNDFTKLELKPDHTNMPLWVCANGKIFLETFSPLHK*AYDFFI 97
D+ +D+++ R GE K DFT LELKPDH NMPLW CA+G+IFLETFSPL+K AYDF I
Sbjct: 19 DYYDDDANEGSRDGEEKKRDFTDLELKPDHGNMPLWACADGRIFLETFSPLYKQAYDFLI 78
Query: 96 AITKPVCSLNTM 61
AI +PVC +M
Sbjct: 79 AIAEPVCRPESM 90
>ref|XP_021820838.1| DNA repair helicase XPB1 [Prunus avium]
Length = 766
Score = 104 bits (260), Expect = 4e-23
Identities = 49/77 (63%), Positives = 59/77 (76%)
Frame = -3
Query: 291 EEKELDF*GEDSDDERRRGEMLKNDFTKLELKPDHTNMPLWVCANGKIFLETFSPLHK*A 112
++++ F GED DD+ R GE K DFTKLELKPDH N PLW CA+G+IFLETFSPL+K A
Sbjct: 24 DDEDAYFVGEDIDDDVRDGEGKKRDFTKLELKPDHINRPLWACADGRIFLETFSPLYKQA 83
Query: 111 YDFFIAITKPVCSLNTM 61
YDF IAI +PVC +M
Sbjct: 84 YDFLIAIAEPVCRPESM 100
>ref|XP_008238934.1| PREDICTED: DNA repair helicase XPB1 [Prunus mume]
Length = 766
Score = 104 bits (260), Expect = 4e-23
Identities = 49/77 (63%), Positives = 59/77 (76%)
Frame = -3
Query: 291 EEKELDF*GEDSDDERRRGEMLKNDFTKLELKPDHTNMPLWVCANGKIFLETFSPLHK*A 112
++++ F GED DD+ R GE K DFTKLELKPDH N PLW CA+G+IFLETFSPL+K A
Sbjct: 24 DDEDAYFGGEDIDDDVRDGEGKKRDFTKLELKPDHINRPLWACADGRIFLETFSPLYKQA 83
Query: 111 YDFFIAITKPVCSLNTM 61
YDF IAI +PVC +M
Sbjct: 84 YDFLIAIAEPVCRPESM 100
>ref|XP_020419876.1| DNA repair helicase XPB1 [Prunus persica]
gb|ONI07171.1| hypothetical protein PRUPE_5G104000 [Prunus persica]
Length = 766
Score = 103 bits (256), Expect = 1e-22
Identities = 48/77 (62%), Positives = 59/77 (76%)
Frame = -3
Query: 291 EEKELDF*GEDSDDERRRGEMLKNDFTKLELKPDHTNMPLWVCANGKIFLETFSPLHK*A 112
++++ F GED D++ R GE K DFTKLELKPDH N PLW CA+G+IFLETFSPL+K A
Sbjct: 24 DDEDAYFGGEDIDEDVRDGEGKKRDFTKLELKPDHINRPLWACADGRIFLETFSPLYKQA 83
Query: 111 YDFFIAITKPVCSLNTM 61
YDF IAI +PVC +M
Sbjct: 84 YDFLIAIAEPVCRPESM 100
>gb|PKI50940.1| hypothetical protein CRG98_028670, partial [Punica granatum]
Length = 238
Score = 99.0 bits (245), Expect = 2e-22
Identities = 47/79 (59%), Positives = 59/79 (74%)
Frame = -3
Query: 297 IAEEKELDF*GEDSDDERRRGEMLKNDFTKLELKPDHTNMPLWVCANGKIFLETFSPLHK 118
I E++E + GE+ +D+ GE K DF+KLELKPDH N PLW CA+G+IFLETFSPL+K
Sbjct: 25 IPEDEEATY-GEEIEDDYHDGEGKKKDFSKLELKPDHANRPLWACADGRIFLETFSPLYK 83
Query: 117 *AYDFFIAITKPVCSLNTM 61
AYDF IAI +PVC +M
Sbjct: 84 QAYDFLIAIAEPVCRPESM 102
>ref|XP_009792962.1| PREDICTED: DNA repair helicase XPB1-like [Nicotiana sylvestris]
Length = 95
Score = 94.0 bits (232), Expect = 4e-22
Identities = 44/64 (68%), Positives = 50/64 (78%)
Frame = -3
Query: 267 GEDSDDERRRGEMLKNDFTKLELKPDHTNMPLWVCANGKIFLETFSPLHK*AYDFFIAIT 88
G+D D R G+ K DFTKLELKPDH N PLW CA+G+IFLETFSPL+K AYDF IAI
Sbjct: 27 GDDFQDGEREGK--KMDFTKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIA 84
Query: 87 KPVC 76
+PVC
Sbjct: 85 EPVC 88
>gb|PIN19680.1| RNA polymerase II transcription initiation [Handroanthus
impetiginosus]
Length = 766
Score = 101 bits (251), Expect = 7e-22
Identities = 47/68 (69%), Positives = 53/68 (77%)
Frame = -3
Query: 264 EDSDDERRRGEMLKNDFTKLELKPDHTNMPLWVCANGKIFLETFSPLHK*AYDFFIAITK 85
ED DD+ R GE K DFTKLELKPDH N PLW CA+G+IFLETFSPL+K AYDF IAI +
Sbjct: 34 EDLDDDLRDGEGKKRDFTKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAE 93
Query: 84 PVCSLNTM 61
PVC +M
Sbjct: 94 PVCRPESM 101
>ref|XP_009375027.1| PREDICTED: DNA repair helicase XPB1 [Pyrus x bretschneideri]
ref|XP_009375030.1| PREDICTED: DNA repair helicase XPB1 [Pyrus x bretschneideri]
Length = 767
Score = 101 bits (251), Expect = 7e-22
Identities = 48/77 (62%), Positives = 57/77 (74%)
Frame = -3
Query: 291 EEKELDF*GEDSDDERRRGEMLKNDFTKLELKPDHTNMPLWVCANGKIFLETFSPLHK*A 112
E+ + + GED DD+ R GE K DFTKLELKPDH N PLW CA+G+IFLETFS L+K A
Sbjct: 25 EDDDSYYGGEDVDDDPRDGEGKKRDFTKLELKPDHANRPLWACADGRIFLETFSALYKQA 84
Query: 111 YDFFIAITKPVCSLNTM 61
YDF IAI +PVC +M
Sbjct: 85 YDFLIAIAEPVCRPESM 101
>ref|XP_023887751.1| general transcription and DNA repair factor IIH helicase subunit
XPB1, partial [Quercus suber]
Length = 640
Score = 100 bits (249), Expect = 1e-21
Identities = 49/76 (64%), Positives = 57/76 (75%)
Frame = -3
Query: 288 EKELDF*GEDSDDERRRGEMLKNDFTKLELKPDHTNMPLWVCANGKIFLETFSPLHK*AY 109
E E + GE+ DD+ R GE K DFTKLELKPDH N PLW CA+G+IFLETFSPL+K AY
Sbjct: 26 EDEDAYYGEEVDDDNRDGEK-KRDFTKLELKPDHANRPLWACADGRIFLETFSPLYKQAY 84
Query: 108 DFFIAITKPVCSLNTM 61
DF IAI +PVC +M
Sbjct: 85 DFLIAIAEPVCRPESM 100
>gb|POE67044.1| dna repair helicase xpb1 [Quercus suber]
Length = 642
Score = 100 bits (249), Expect = 1e-21
Identities = 49/76 (64%), Positives = 57/76 (75%)
Frame = -3
Query: 288 EKELDF*GEDSDDERRRGEMLKNDFTKLELKPDHTNMPLWVCANGKIFLETFSPLHK*AY 109
E E + GE+ DD+ R GE K DFTKLELKPDH N PLW CA+G+IFLETFSPL+K AY
Sbjct: 26 EDEDAYYGEEVDDDNRDGEK-KRDFTKLELKPDHANRPLWACADGRIFLETFSPLYKQAY 84
Query: 108 DFFIAITKPVCSLNTM 61
DF IAI +PVC +M
Sbjct: 85 DFLIAIAEPVCRPESM 100
>ref|XP_023881498.1| general transcription and DNA repair factor IIH helicase subunit
XPB1-like [Quercus suber]
Length = 764
Score = 100 bits (249), Expect = 1e-21
Identities = 49/76 (64%), Positives = 57/76 (75%)
Frame = -3
Query: 288 EKELDF*GEDSDDERRRGEMLKNDFTKLELKPDHTNMPLWVCANGKIFLETFSPLHK*AY 109
E E + GE+ DD+ R GE K DFTKLELKPDH N PLW CA+G+IFLETFSPL+K AY
Sbjct: 26 EDEDAYYGEEVDDDNRDGEK-KRDFTKLELKPDHANRPLWACADGRIFLETFSPLYKQAY 84
Query: 108 DFFIAITKPVCSLNTM 61
DF IAI +PVC +M
Sbjct: 85 DFLIAIAEPVCRPESM 100
>gb|POE74164.1| dna repair helicase xpb1 [Quercus suber]
Length = 903
Score = 100 bits (249), Expect = 1e-21
Identities = 49/76 (64%), Positives = 57/76 (75%)
Frame = -3
Query: 288 EKELDF*GEDSDDERRRGEMLKNDFTKLELKPDHTNMPLWVCANGKIFLETFSPLHK*AY 109
E E + GE+ DD+ R GE K DFTKLELKPDH N PLW CA+G+IFLETFSPL+K AY
Sbjct: 183 EDEDAYYGEEVDDDNRDGEK-KRDFTKLELKPDHANRPLWACADGRIFLETFSPLYKQAY 241
Query: 108 DFFIAITKPVCSLNTM 61
DF IAI +PVC +M
Sbjct: 242 DFLIAIAEPVCRPESM 257
>ref|XP_011073070.1| DNA repair helicase XPB1 [Sesamum indicum]
Length = 764
Score = 99.8 bits (247), Expect = 2e-21
Identities = 46/68 (67%), Positives = 53/68 (77%)
Frame = -3
Query: 264 EDSDDERRRGEMLKNDFTKLELKPDHTNMPLWVCANGKIFLETFSPLHK*AYDFFIAITK 85
ED DD+ R GE K DF+KLELKPDH N PLW CA+G+IFLETFSPL+K AYDF IAI +
Sbjct: 32 EDLDDDLRDGEGKKRDFSKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAE 91
Query: 84 PVCSLNTM 61
PVC +M
Sbjct: 92 PVCRPESM 99
>ref|XP_021866493.1| DNA repair helicase XPB1-like [Spinacia oleracea]
gb|KNA04862.1| hypothetical protein SOVF_195760 [Spinacia oleracea]
Length = 765
Score = 99.8 bits (247), Expect = 2e-21
Identities = 49/80 (61%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Frame = -3
Query: 297 IAEEKELDF*GEDSDDER-RRGEMLKNDFTKLELKPDHTNMPLWVCANGKIFLETFSPLH 121
+ E+ F ED DD+R GE K DFTKLELKPDH N PLW CA+G+IFLETFSPL+
Sbjct: 24 VTEDGNAYFAAEDFDDDRIPEGEPKKRDFTKLELKPDHLNRPLWACADGRIFLETFSPLY 83
Query: 120 K*AYDFFIAITKPVCSLNTM 61
K AYDF IAI +PVC +M
Sbjct: 84 KQAYDFLIAIAEPVCRPESM 103
>ref|XP_024031230.1| general transcription and DNA repair factor IIH helicase subunit
XPB1 [Morus notabilis]
Length = 767
Score = 99.8 bits (247), Expect = 2e-21
Identities = 47/76 (61%), Positives = 57/76 (75%)
Frame = -3
Query: 288 EKELDF*GEDSDDERRRGEMLKNDFTKLELKPDHTNMPLWVCANGKIFLETFSPLHK*AY 109
E E + G++ DD+ R GE K DF+KLELKPDH N PLW CA+G+IFLETFSPL+K AY
Sbjct: 28 EDEDAYFGDEIDDDFRYGEGKKRDFSKLELKPDHANRPLWACADGRIFLETFSPLYKQAY 87
Query: 108 DFFIAITKPVCSLNTM 61
DF IAI +PVC +M
Sbjct: 88 DFLIAIAEPVCRPESM 103
>ref|XP_009386121.1| PREDICTED: DNA repair helicase XPB1-like [Musa acuminata subsp.
malaccensis]
Length = 774
Score = 99.8 bits (247), Expect = 2e-21
Identities = 48/79 (60%), Positives = 59/79 (74%), Gaps = 2/79 (2%)
Frame = -3
Query: 291 EEKELDF*GEDSDDERRRGE--MLKNDFTKLELKPDHTNMPLWVCANGKIFLETFSPLHK 118
EE++ + G D DD+ R GE + K DFT+LELKPDH N PLW CA+G+IFLETFSPL+K
Sbjct: 29 EEEDFNDYGNDFDDDSRDGESEIKKRDFTQLELKPDHVNRPLWACADGRIFLETFSPLYK 88
Query: 117 *AYDFFIAITKPVCSLNTM 61
AYDF IAI +PVC +M
Sbjct: 89 QAYDFLIAIAEPVCRPESM 107