BLASTX nr result
ID: Ophiopogon24_contig00000490
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon24_contig00000490
(374 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_021818512.1| cleavage and polyadenylation specificity fac... 80 8e-15
ref|XP_020426099.1| cleavage and polyadenylation specificity fac... 80 8e-15
emb|CAN66828.1| hypothetical protein VITISV_015886 [Vitis vinifera] 75 1e-14
ref|XP_010929959.1| PREDICTED: cleavage and polyadenylation spec... 75 2e-13
ref|XP_010650880.1| PREDICTED: cleavage and polyadenylation spec... 75 2e-13
ref|XP_002282072.3| PREDICTED: cleavage and polyadenylation spec... 75 2e-13
ref|XP_020245280.1| glycine-rich RNA-binding protein 3, mitochon... 74 1e-12
ref|XP_023904095.1| cleavage and polyadenylation specificity fac... 73 2e-12
ref|XP_023904094.1| cleavage and polyadenylation specificity fac... 73 2e-12
gb|POE45696.1| cleavage and polyadenylation specificity factor s... 73 2e-12
ref|XP_008805116.1| PREDICTED: cleavage and polyadenylation spec... 72 3e-12
ref|XP_015572237.1| PREDICTED: heterogeneous nuclear ribonucleop... 72 4e-12
ref|XP_020253325.1| LOW QUALITY PROTEIN: glycine-rich RNA-bindin... 71 6e-12
ref|XP_010251347.1| PREDICTED: RNA-binding motif protein, X chro... 71 7e-12
ref|XP_021901218.1| cleavage and polyadenylation specificity fac... 71 7e-12
gb|PON42322.1| Splicing factor-like protein [Parasponia andersonii] 71 7e-12
ref|XP_020107041.1| cleavage and polyadenylation specificity fac... 71 1e-11
gb|OVA17614.1| RNA recognition motif domain [Macleaya cordata] 71 1e-11
gb|OAY73386.1| Cleavage and polyadenylation specificity factor s... 71 1e-11
gb|PON91400.1| Splicing factor-like protein [Trema orientalis] 71 1e-11
>ref|XP_021818512.1| cleavage and polyadenylation specificity factor subunit 6 isoform
X1 [Prunus avium]
ref|XP_021818513.1| cleavage and polyadenylation specificity factor subunit 6 isoform
X2 [Prunus avium]
Length = 660
Score = 79.7 bits (195), Expect = 8e-15
Identities = 38/54 (70%), Positives = 46/54 (85%), Gaps = 2/54 (3%)
Frame = +1
Query: 1 GEVNHERGGRSNA-SRE-ERGAERDYTGISERRHHDDKEQDWDRSDRERHREDK 156
GE NHE+GGRSNA SRE ERG+ERD++G SERRH D++EQDWDRS+R HRE +
Sbjct: 544 GEANHEKGGRSNAPSRERERGSERDWSGNSERRHRDEREQDWDRSERGEHREHR 597
>ref|XP_020426099.1| cleavage and polyadenylation specificity factor subunit 6 [Prunus
persica]
ref|XP_020426104.1| cleavage and polyadenylation specificity factor subunit 6 [Prunus
persica]
ref|XP_020426109.1| cleavage and polyadenylation specificity factor subunit 6 [Prunus
persica]
gb|ONI30252.1| hypothetical protein PRUPE_1G240200 [Prunus persica]
gb|ONI30253.1| hypothetical protein PRUPE_1G240200 [Prunus persica]
gb|ONI30254.1| hypothetical protein PRUPE_1G240200 [Prunus persica]
gb|ONI30255.1| hypothetical protein PRUPE_1G240200 [Prunus persica]
gb|ONI30256.1| hypothetical protein PRUPE_1G240200 [Prunus persica]
gb|ONI30257.1| hypothetical protein PRUPE_1G240200 [Prunus persica]
Length = 660
Score = 79.7 bits (195), Expect = 8e-15
Identities = 38/54 (70%), Positives = 46/54 (85%), Gaps = 2/54 (3%)
Frame = +1
Query: 1 GEVNHERGGRSNA-SRE-ERGAERDYTGISERRHHDDKEQDWDRSDRERHREDK 156
GE NHE+GGRSNA SRE ERG+ERD++G SERRH D++EQDWDRS+R HRE +
Sbjct: 544 GEANHEKGGRSNAPSRERERGSERDWSGNSERRHRDEREQDWDRSERGEHREHR 597
>emb|CAN66828.1| hypothetical protein VITISV_015886 [Vitis vinifera]
Length = 168
Score = 75.5 bits (184), Expect = 1e-14
Identities = 38/55 (69%), Positives = 49/55 (89%), Gaps = 3/55 (5%)
Frame = +1
Query: 1 GEVNHERGGRSN-ASRE-ERGAERDYTGISERRHHDDKEQDWDRSDRE-RHREDK 156
GEVNHE+ GRSN ASRE ERG+ERD++G SERRH D++EQDW+RSD++ R+RE+K
Sbjct: 56 GEVNHEKVGRSNTASREKERGSERDWSGNSERRHRDEREQDWERSDKDHRYREEK 110
>ref|XP_010929959.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185 [Elaeis guineensis]
Length = 630
Score = 75.5 bits (184), Expect = 2e-13
Identities = 36/53 (67%), Positives = 48/53 (90%), Gaps = 1/53 (1%)
Frame = +1
Query: 1 GEVNHERGGRSNASRE-ERGAERDYTGISERRHHDDKEQDWDRSDRERHREDK 156
GEVN+E+ GRSNASRE ERG+ERD++G SERR+ D++E++ DRSDRER+RE+K
Sbjct: 520 GEVNNEKVGRSNASREKERGSERDWSGSSERRYRDEREKERDRSDRERYREEK 572
>ref|XP_010650880.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185 isoform X2 [Vitis vinifera]
ref|XP_010650883.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185 isoform X2 [Vitis vinifera]
ref|XP_010650886.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185 isoform X2 [Vitis vinifera]
ref|XP_019075332.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185 isoform X2 [Vitis vinifera]
Length = 650
Score = 75.5 bits (184), Expect = 2e-13
Identities = 38/55 (69%), Positives = 49/55 (89%), Gaps = 3/55 (5%)
Frame = +1
Query: 1 GEVNHERGGRSN-ASRE-ERGAERDYTGISERRHHDDKEQDWDRSDRE-RHREDK 156
GEVNHE+ GRSN ASRE ERG+ERD++G SERRH D++EQDW+RSD++ R+RE+K
Sbjct: 538 GEVNHEKVGRSNTASREKERGSERDWSGNSERRHRDEREQDWERSDKDHRYREEK 592
>ref|XP_002282072.3| PREDICTED: cleavage and polyadenylation specificity factor subunit
6 isoform X1 [Vitis vinifera]
Length = 656
Score = 75.5 bits (184), Expect = 2e-13
Identities = 38/55 (69%), Positives = 49/55 (89%), Gaps = 3/55 (5%)
Frame = +1
Query: 1 GEVNHERGGRSN-ASRE-ERGAERDYTGISERRHHDDKEQDWDRSDRE-RHREDK 156
GEVNHE+ GRSN ASRE ERG+ERD++G SERRH D++EQDW+RSD++ R+RE+K
Sbjct: 544 GEVNHEKVGRSNTASREKERGSERDWSGNSERRHRDEREQDWERSDKDHRYREEK 598
>ref|XP_020245280.1| glycine-rich RNA-binding protein 3, mitochondrial-like [Asparagus
officinalis]
Length = 421
Score = 73.6 bits (179), Expect = 1e-12
Identities = 39/54 (72%), Positives = 44/54 (81%), Gaps = 2/54 (3%)
Frame = +1
Query: 1 GEVNHERGG-RSNASRE-ERGAERDYTGISERRHHDDKEQDWDRSDRERHREDK 156
GEVNHERGG RSNASRE ERG++ ERR+ D+KEQDWDRSDRERHRE+K
Sbjct: 317 GEVNHERGGGRSNASREKERGSD-------ERRYRDEKEQDWDRSDRERHREEK 363
>ref|XP_023904095.1| cleavage and polyadenylation specificity factor subunit 6 isoform
X2 [Quercus suber]
Length = 655
Score = 73.2 bits (178), Expect = 2e-12
Identities = 38/58 (65%), Positives = 48/58 (82%), Gaps = 6/58 (10%)
Frame = +1
Query: 1 GEVNHERGGRSNA-SRE-ERGAERDYTGISERRHHDDKEQDWDRSDRE----RHREDK 156
GE NHE+G RS+A SRE ERG+ERD++G SERRH D++EQDWDRS+RE R+RE+K
Sbjct: 540 GEGNHEKGARSSAASREKERGSERDWSGNSERRHRDEREQDWDRSEREHREPRYREEK 597
>ref|XP_023904094.1| cleavage and polyadenylation specificity factor subunit 6 isoform
X1 [Quercus suber]
Length = 658
Score = 73.2 bits (178), Expect = 2e-12
Identities = 38/58 (65%), Positives = 48/58 (82%), Gaps = 6/58 (10%)
Frame = +1
Query: 1 GEVNHERGGRSNA-SRE-ERGAERDYTGISERRHHDDKEQDWDRSDRE----RHREDK 156
GE NHE+G RS+A SRE ERG+ERD++G SERRH D++EQDWDRS+RE R+RE+K
Sbjct: 543 GEGNHEKGARSSAASREKERGSERDWSGNSERRHRDEREQDWDRSEREHREPRYREEK 600
>gb|POE45696.1| cleavage and polyadenylation specificity factor subunit [Quercus
suber]
Length = 670
Score = 73.2 bits (178), Expect = 2e-12
Identities = 38/58 (65%), Positives = 48/58 (82%), Gaps = 6/58 (10%)
Frame = +1
Query: 1 GEVNHERGGRSNA-SRE-ERGAERDYTGISERRHHDDKEQDWDRSDRE----RHREDK 156
GE NHE+G RS+A SRE ERG+ERD++G SERRH D++EQDWDRS+RE R+RE+K
Sbjct: 555 GEGNHEKGARSSAASREKERGSERDWSGNSERRHRDEREQDWDRSEREHREPRYREEK 612
>ref|XP_008805116.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185 [Phoenix dactylifera]
Length = 630
Score = 72.4 bits (176), Expect = 3e-12
Identities = 35/53 (66%), Positives = 47/53 (88%), Gaps = 1/53 (1%)
Frame = +1
Query: 1 GEVNHERGGRSNASRE-ERGAERDYTGISERRHHDDKEQDWDRSDRERHREDK 156
GEVN+ER RSNASRE ERG+ERD++G SERR+ D++E++ DRSD+ER+RE+K
Sbjct: 520 GEVNNERVERSNASREKERGSERDWSGSSERRYRDEREKERDRSDKERYREEK 572
>ref|XP_015572237.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A1 homolog
[Ricinus communis]
gb|EEF47594.1| RNA binding protein, putative [Ricinus communis]
Length = 644
Score = 72.0 bits (175), Expect = 4e-12
Identities = 37/58 (63%), Positives = 47/58 (81%), Gaps = 6/58 (10%)
Frame = +1
Query: 1 GEVNHERGGRSNA-SRE-ERGAERDYTGISERRHHDDKEQDWDRSDRE----RHREDK 156
GEVNHE+G RS+A SRE ER +ERD++G S+RRH DD+E DWDRS+RE R+RE+K
Sbjct: 529 GEVNHEKGARSSAASREKERASERDWSGNSDRRHRDDREHDWDRSEREHKEHRYREEK 586
>ref|XP_020253325.1| LOW QUALITY PROTEIN: glycine-rich RNA-binding protein 3,
mitochondrial [Asparagus officinalis]
Length = 370
Score = 71.2 bits (173), Expect = 6e-12
Identities = 34/52 (65%), Positives = 39/52 (75%)
Frame = +1
Query: 1 GEVNHERGGRSNASREERGAERDYTGISERRHHDDKEQDWDRSDRERHREDK 156
GE NH+RGG+S A+RE+ ER G SERR DDKEQDWD S RERHRED+
Sbjct: 268 GEANHDRGGKSTAAREK---ERGSDGYSERRKRDDKEQDWDGSGRERHREDR 316
>ref|XP_010251347.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Nelumbo
nucifera]
Length = 599
Score = 71.2 bits (173), Expect = 7e-12
Identities = 36/56 (64%), Positives = 45/56 (80%), Gaps = 4/56 (7%)
Frame = +1
Query: 1 GEVNHERGG-RSNASREE--RGAERDYTGISERRHHDDKEQDWDRSDRE-RHREDK 156
GE HERGG RSNA+ E RG ERD++G SERRH D+++QDWDRSDRE R++E+K
Sbjct: 486 GEAGHERGGGRSNAATREKDRGXERDWSGNSERRHRDERDQDWDRSDREHRYKEEK 541
>ref|XP_021901218.1| cleavage and polyadenylation specificity factor subunit CG7185
[Carica papaya]
Length = 636
Score = 71.2 bits (173), Expect = 7e-12
Identities = 35/55 (63%), Positives = 47/55 (85%), Gaps = 3/55 (5%)
Frame = +1
Query: 1 GEVNHERGGRSNA-SRE-ERGAERDYTGISERRHHDDKEQDWDRSDRE-RHREDK 156
GE NHE+GGRS+A SRE ER +ERD++G ++RRHHD++ QDWDRS+RE R+R +K
Sbjct: 524 GEANHEKGGRSSAASREKERASERDWSGSNDRRHHDERGQDWDRSEREHRYRGEK 578
>gb|PON42322.1| Splicing factor-like protein [Parasponia andersonii]
Length = 659
Score = 71.2 bits (173), Expect = 7e-12
Identities = 36/58 (62%), Positives = 48/58 (82%), Gaps = 6/58 (10%)
Frame = +1
Query: 1 GEVNHERGGRSNA-SRE-ERGAERDYTGISERRHHDDKEQDWDRSDRE----RHREDK 156
GE NHE+G RS+A SRE ERG++RD +G SERRHH++++QDWDRSD+E R+RE+K
Sbjct: 544 GEANHEKGVRSSAASRERERGSDRDRSGNSERRHHEERDQDWDRSDKEQREHRYREEK 601
>ref|XP_020107041.1| cleavage and polyadenylation specificity factor subunit 6 [Ananas
comosus]
Length = 602
Score = 70.9 bits (172), Expect = 1e-11
Identities = 33/53 (62%), Positives = 45/53 (84%), Gaps = 1/53 (1%)
Frame = +1
Query: 1 GEVNHERGGRSNASRE-ERGAERDYTGISERRHHDDKEQDWDRSDRERHREDK 156
GE+N+ERGGRSNASRE E+ +RD++G ERRH D++EQD DR DRER++E++
Sbjct: 495 GEMNNERGGRSNASREKEKVPDRDWSGNPERRHRDEREQDSDRYDRERYKEER 547
>gb|OVA17614.1| RNA recognition motif domain [Macleaya cordata]
Length = 654
Score = 70.9 bits (172), Expect = 1e-11
Identities = 36/55 (65%), Positives = 46/55 (83%), Gaps = 3/55 (5%)
Frame = +1
Query: 1 GEVNHERGGRSN-ASRE-ERGAERDYTGISERRHHDDKEQDWDRSDRE-RHREDK 156
G+ + ERGG+SN A RE ER ER+++G SERRHHDD+EQDWDRSDR+ R+RE+K
Sbjct: 542 GDASQERGGKSNPAPRERERVPEREWSGNSERRHHDDREQDWDRSDRDRRYREEK 596
>gb|OAY73386.1| Cleavage and polyadenylation specificity factor subunit CG7185
[Ananas comosus]
Length = 654
Score = 70.9 bits (172), Expect = 1e-11
Identities = 33/53 (62%), Positives = 45/53 (84%), Gaps = 1/53 (1%)
Frame = +1
Query: 1 GEVNHERGGRSNASRE-ERGAERDYTGISERRHHDDKEQDWDRSDRERHREDK 156
GE+N+ERGGRSNASRE E+ +RD++G ERRH D++EQD DR DRER++E++
Sbjct: 547 GEMNNERGGRSNASREKEKVPDRDWSGNPERRHRDEREQDSDRYDRERYKEER 599
>gb|PON91400.1| Splicing factor-like protein [Trema orientalis]
Length = 659
Score = 70.9 bits (172), Expect = 1e-11
Identities = 35/55 (63%), Positives = 48/55 (87%), Gaps = 3/55 (5%)
Frame = +1
Query: 1 GEVNHERGGRSNA-SRE-ERGAERDYTGISERRHHDDKEQDWDRSDRE-RHREDK 156
GE NHE+G RS+A SRE ERG++RD +G SERRHH++++QDWDRS++E R+RE+K
Sbjct: 547 GEANHEKGVRSSAASRERERGSDRDRSGNSERRHHEERDQDWDRSEKEHRYREEK 601