BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00000012
         (8744 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_569126.1| replicase [Garlic virus A] >gi|2826150|dbj|BAA6...  1786   0.0  
ref|YP_004659200.1| replication-associated polyprotein [Blackber...  1293   0.0  
ref|YP_009328892.1| RdRp [Arachis pintoi virus] >gi|1109489164|g...  1266   0.0  
gb|APG31855.1| RdRp [Arachis pintoi virus]                           1266   0.0  
ref|YP_009362668.1| RdRP [Alfalfa virus S] >gi|1190234726|gb|ARQ...  1241   0.0  
gb|AHB87051.1| putative RNA replicase, partial [Escobaria virus]     1230   0.0  
ref|NP_659010.1| hypothetical protein GvEgp1 [Garlic virus E] >g...  1225   0.0  
gb|AHA90833.1| replicase [Garlic virus D]                            1225   0.0  
gb|AGG13306.1| Replicase [Garlic virus X]                            1224   0.0  
gb|AGG13300.1| Replicase [Garlic virus C]                            1221   0.0  
gb|AHB33487.1| replicase [Garlic virus A]                            1219   0.0  
ref|NP_569132.1| replicase [Garlic virus C] >gi|2826157|dbj|BAA6...  1219   0.0  
gb|AVK94126.1| replicase [Garlic virus D] >gi|1356588320|gb|AVK9...  1214   0.0  
ref|YP_009110668.1| replicase [Garlic virus B] >gi|721751202|gb|...  1213   0.0  
gb|AEV51816.1| replicase, partial [Garlic virus C]                   1212   0.0  
gb|AFV61767.1| replicase [Garlic virus X]                            1211   0.0  
gb|AGG13294.1| Replicase [Garlic virus C]                            1211   0.0  
gb|AGC09141.1| Replicase [Garlic virus A]                            1209   0.0  
gb|ALK24278.1| replicase [Garlic virus D]                            1204   0.0  
emb|CAC83699.1| RNA-dependent RNA-polymerase [Garlic virus X]        1202   0.0  

>ref|NP_569126.1| replicase [Garlic virus A]
 dbj|BAA61806.1| replicase [Garlic virus A]
          Length = 1625

 Score = 1786 bits (4627), Expect = 0.0
 Identities = 965/1725 (55%), Positives = 1163/1725 (67%), Gaps = 12/1725 (0%)
 Frame = -2

Query: 8647 TRVVKLLEAVTDPSTKAAHSELCFKYAKEAAHNAMRLAPFVVSDTEATTLERMGITTSPF 8468
            T V KL + ++DP+TKA +S  CF+ A+ A+  A+ +APF V++ EA TLER+GITTSPF
Sbjct: 2    TAVQKLFDQISDPNTKAGYSNACFEAAQNASKKALAIAPFSVTNPEALTLERIGITTSPF 61

Query: 8467 ATTPHTHAGDKIIENDCLSIIGHYLPK-EPVTFIQLKKGKLHLLNRAPKQDVLANYCHEP 8291
            ATT HTHA DKIIENDCLSIIGHYLPK E VT IQLK+GKLHLL R P  D   NYC+EP
Sbjct: 62   ATTSHTHAADKIIENDCLSIIGHYLPKKEAVTLIQLKRGKLHLLGRNPNLDRFQNYCYEP 121

Query: 8290 KDVLRYGITNPDYCPRVDTQTAVIADTLHFMSTRQLTQLFLCNPNLCTVFATLVLPIEAL 8111
            KDVLRYG+TNP+ CP+VDT+ AV+ADTLHFMS +QL  LF  NP L  +FATLVLPIEAL
Sbjct: 122  KDVLRYGLTNPNSCPKVDTEYAVLADTLHFMSPKQLYTLFSKNPKLERLFATLVLPIEAL 181

Query: 8110 HKLPSLFPEIYRLEYYKKHFAYMPGGHGGGAYVHSYETLKWLSTGQIG------QSYTNP 7949
            HKLPSLFP++Y+LEYYK HF+YMPGGHGGGAYVHSY TL+WL T Q+G       S TNP
Sbjct: 182  HKLPSLFPDVYKLEYYKDHFSYMPGGHGGGAYVHSYSTLRWLDTAQVGPVDYDKSSITNP 241

Query: 7948 RLGTTDYISIEKIETKAAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANV 7769
                TDY+SIEKIETKAAHHIMLI RR+ Q  WPL  LWVFH SDYV+LPP+FYPPEANV
Sbjct: 242  -WPITDYLSIEKIETKAAHHIMLIQRRRVQVDWPLPTLWVFHASDYVKLPPIFYPPEANV 300

Query: 7768 QNTYPHDLVKRMQAYCFSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITG 7589
            Q TYPH  VKRMQ YCFSVKAVSLRDIFAKLRQVIET EL RYSMADLIRLANYLL ITG
Sbjct: 301  QKTYPHVFVKRMQLYCFSVKAVSLRDIFAKLRQVIETQELIRYSMADLIRLANYLLFITG 360

Query: 7588 MEQVSDYECLLTKGWLAKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCV 7409
            M Q+SDYE  L +    KL   IR R+R  F++L GKTSYAALL+VTDVIPV FTT P  
Sbjct: 361  MNQLSDYESPLLENLFGKLCASIRMRLRTFFQNLLGKTSYAALLTVTDVIPVHFTTTPKR 420

Query: 7408 RGCDGISWLPEPEEINRP---PPDEPGPTLEDLEMMADLHNAQRLXXXXXXXXXXXXXXX 7238
            R   G SW    ++  +P   PP   GP+ +DL+++A  H  +                 
Sbjct: 421  REAVGESWFRSTDDEPKPKSEPPQPSGPSPDDLDLLAWFHELE----------------- 463

Query: 7237 XXXXXXXXXXSRRPSPTSNESRXXXXXXXXXXXXTIHGSTTPQGSAVTPQNKAQTPRPKP 7058
                          SP + +S             +   + +PQ S+  P+++A T     
Sbjct: 464  ------------NGSPENQQSEAPSLATTQTSETSTSETPSPQKSSAAPEDQAAT----- 506

Query: 7057 NAWTYQEGWDDYTHPATSDSEYDFDRASTLSNWSGSFIDTDQTHSEEMVRPTSPGDVLRM 6878
               +YQ          +S        +ST SN     ++TD +H+     PTS    LR 
Sbjct: 507  ---SYQGLHAARECSTSSPRRLTTSESSTPSN---DRLETD-SHNH---TPTSNTAALRG 556

Query: 6877 PDHHPPDTGRANVPEPDPRGKRPMQPAPAAPPTDGASCSYDSNAGPKPPDTPPASPQRGV 6698
             D    +T    +  PD                  ++ ++D++A       P  +P    
Sbjct: 557  DD----ETNAPTLVIPD------------------SNQAHDAHAPMLATPDPDQAP---- 590

Query: 6697 TSNPHSAPKTRGPDDSALAFTFGSITPSMFQPDRAQPKPILSGQAAREGLNVPAQTTTRR 6518
              + H+  +    DD        S T S+   D  +  P L      + L+         
Sbjct: 591  --DAHAPVECCSTDDED-----ASSTASLSDHDDCESLPSLEDATDVDSLDFEGVMPDIT 643

Query: 6517 GPPTPDHSPPAGEAERSTASPPRHPPTTSYPRQNQESPQTQSDANQEGNSAAEPEQDTSF 6338
              P+PD  P  G+   +T              Q+  +  T    +Q+G+   E    T+ 
Sbjct: 644  TDPSPD--PEGGDTAAAT-------------EQHDSAQPTLDPNDQQGD---ELNSGTAD 685

Query: 6337 PNLDEAMFEPAREEYTTAGDHDAAATRAEHHSSRSNPAADDSNIVLSSALEASDRLEPNT 6158
             + DEA       E T   D       + +H   + P                 RLEP  
Sbjct: 686  QDADEA-------EVTNQAD-------SANHVRPTRP-----------------RLEP-- 712

Query: 6157 SHIASAYPHLSPHQVEILAKHGFTNLKQQFSGTGAIEPIFENPRASNFS--VAPPTSRSQ 5984
                     L    ++IL  HGFT L+ Q  GT  I+P++ N +        A     + 
Sbjct: 713  ---------LDQATIDILKLHGFTALQPQHDGTDQIQPVYFNDKVKYHRQLEAKDLCATA 763

Query: 5983 RIVSSMAASIYRQVYSYPIDSKRATAYMSDVKNNLTGLVLPKLSRETLSAWVALCEHSTR 5804
            +   ++A S++R +Y+Y I++KRATAYMSDVKNNLTGLVLPKL R+ LS+WVAL E +TR
Sbjct: 764  KPFITLATSLHRGIYNYRINNKRATAYMSDVKNNLTGLVLPKLDRDLLSSWVALAERTTR 823

Query: 5803 DVKLLVIHGAGGAGKSRCLQTMLLDHPALAEDVNIITPTVNLVLDWRKKNPQIDPRRFIT 5624
            DV LLVIHGAGGAGKSR LQ +L + P L E VNI+ PT+NL  DW+KK P +DPRR +T
Sbjct: 824  DVGLLVIHGAGGAGKSRALQELLRNSPELLEAVNIVVPTINLANDWKKKLPAMDPRRVMT 883

Query: 5623 FEKACEREGREVVIFDDYGKLPAGYIDAYLAIKPTVEMIILTGDQRQSTHHCTNRDAQTA 5444
            FEKACERE + V IFDDYGKLPAG++DAYLAIK  VE+ ILTGDQRQSTHH  +R++Q A
Sbjct: 884  FEKACERECKSVTIFDDYGKLPAGFVDAYLAIKVNVELAILTGDQRQSTHH-QDRESQIA 942

Query: 5443 NIQNNVHHFRRYCDYYINATHRQPRRLANPIEVHAEQEAGGAVTHASIIPENCTALVPSH 5264
             + +NV HF  Y DYYINATHRQP+RLANPI+VHAE+  GG+V  + ++P+    LVP+ 
Sbjct: 943  LLSSNVAHFSPYTDYYINATHRQPKRLANPIKVHAERLIGGSVRRSDLVPDRAMVLVPAF 1002

Query: 5263 RSQAVLADLGRVAYTYSGCQGLTLNHVTIVLDADTPLCSPEVLYTAFSRAASTITFVNTH 5084
            RSQ++L DLGR A TY+GCQGLTLNH+TIVLD DTPLCS EVLYTAFSRA+ +ITFVNTH
Sbjct: 1003 RSQSLLTDLGRQAMTYAGCQGLTLNHLTIVLDKDTPLCSEEVLYTAFSRASESITFVNTH 1062

Query: 5083 SEHPQFLRKLDATPYLKTLISGVREDEDAGKDVSPEEPQAPKPSVKTHLPVENDATFLEP 4904
            S++P+FL KLDATPYLKTLIS VREDE AG    P EP       KTH+PV ND   L+ 
Sbjct: 1063 SDNPEFLAKLDATPYLKTLISWVREDEQAGSSNPPPEPNVRDEPTKTHIPVTNDRVQLDD 1122

Query: 4903 KIEAMLDKDVRELWDGREKTNLMQTQDPVVQLFPHQQAKDEALFRITIDKRIKTATVDEN 4724
            K+E M DKD RELW G EKTNLMQTQDP+VQLFPHQQ+KDEALF+ITI +RI+TA  ++N
Sbjct: 1123 KVETMEDKDTRELWSGEEKTNLMQTQDPIVQLFPHQQSKDEALFKITIGERIRTADPEKN 1182

Query: 4723 TKAIVGRLHAGDLLFEAYAKFMRVPKEPQPFDPELWRHCRQLALRTYLSKPKANLVQGTA 4544
             K++   L+AGDLLFEAYA+FM+VP EPQ FD  LW HCRQLALRTYLSKP ANL QG +
Sbjct: 1183 AKSLQHTLNAGDLLFEAYAQFMKVPAEPQAFDKRLWTHCRQLALRTYLSKPAANLQQGAS 1242

Query: 4543 RQDPDFPDNAIALFNKSQWVKKLEKVGFKFKAGQTISAFKQSTVLLTTTMALYLRKKREQ 4364
            RQDPDFPDNAIALFNKSQWVKKLEKVG KFKAGQTISAFKQ  VLLTTTMALYLRKKREQ
Sbjct: 1243 RQDPDFPDNAIALFNKSQWVKKLEKVGAKFKAGQTISAFKQQVVLLTTTMALYLRKKREQ 1302

Query: 4363 HQPENVFIMCEKTPADFNDFVTNRWDFSCDSYTSDYEQYDQSQDASFLNFELRKAKHLGV 4184
            HQP+NVFIMCE+TP  FN+FV  +WDFS  +YTSDY QYDQSQDA FLNFELRKA+HLGV
Sbjct: 1303 HQPDNVFIMCERTPDQFNNFVLTKWDFSRPNYTSDYTQYDQSQDAPFLNFELRKARHLGV 1362

Query: 4183 PDSVTDFYRFIKTHARTFIGNLAIMRLSGEGPTFDANTECNIAYDALRFQLTDTVNACYA 4004
            PD V  FY+FIKTHA+TF+GNLAIMRLSGEGPTFDANTECNIAYDALRF+L D V ACYA
Sbjct: 1363 PDEVLSFYKFIKTHAKTFVGNLAIMRLSGEGPTFDANTECNIAYDALRFRLDDNVRACYA 1422

Query: 4003 GDDLVRDKVCEERASWSFSQHLFELTAKPQSTRKPDFCGWRLTPYGIVKNPTQLYQSLQL 3824
            GDDLVRD+ CEERA W +S+ LF L AKP  T KPDFCGWRLTP+GIVK+P QLYQSLQL
Sbjct: 1423 GDDLVRDRACEERAGWVYSERLFSLKAKPLVTSKPDFCGWRLTPHGIVKSPIQLYQSLQL 1482

Query: 3823 ALHLNKMEDVKRSYAIDYTHAYRLQDRLFEIFDEKEIAAHHLTTRLLIKHGVRTAHTGDH 3644
            AL L K+EDVKRSYAIDY  AYRL D+L++IFDE+E+  H L TR LIK G++   +G+H
Sbjct: 1483 ALRLGKVEDVKRSYAIDYLFAYRLGDKLYDIFDEEELEKHQLVTRTLIKKGMQPPESGNH 1542

Query: 3643 LPMFHVTSDRLIQDPDAIRVEDSAGSRSIVSSVQIQEDHFSPERP 3509
            LP FH+TSDRLI+DP AI+++     R ++    + +D+  P+ P
Sbjct: 1543 LPTFHITSDRLIRDPRAIKIQSYESDRLLLHQPVLIDDYI-PKNP 1586


>ref|YP_004659200.1| replication-associated polyprotein [Blackberry virus E]
 gb|AEI17897.1| replication-associated polyprotein [Blackberry virus E]
          Length = 1499

 Score = 1293 bits (3346), Expect = 0.0
 Identities = 653/1034 (63%), Positives = 785/1034 (75%), Gaps = 48/1034 (4%)
 Frame = -2

Query: 6484 GEAERSTASPPRHPPTTSYPRQNQESPQTQSDANQEGNS--------AAEPEQDTSFPNL 6329
            GE  ++TA       T++ P   ++  +  S A+ +           ++E +QD +   L
Sbjct: 456  GENPKATAPGTHENKTSNDPALERKDIEVPSSASPKPTRQPLLEHVISSEQDQDLTLDEL 515

Query: 6328 DEAMFE---PAREEYTTAGD---------HDAAATRAEHHSSRSNP---AADDSNIVLSS 6194
             EAM +   P+ ++  T G          H    + A H+ +  +    A  D +I   +
Sbjct: 516  -EAMLKAKPPSTQDKGTVGHQMSDRVYIPHGEGTSSAPHNGTPEHGREHAGSDEHIQFGT 574

Query: 6193 ALE---ASDRLEPN-TSHI-------------------ASAYPHLSPHQ-VEILAKHGFT 6086
              E     D L P  TS +                   A+A  H  P + V+IL  HGFT
Sbjct: 575  IGEDDLLEDLLTPTPTSEVGTTNSTAQVQAPRAGPDPKANAEAHTLPKRTVDILRLHGFT 634

Query: 6085 NLKQQFSGTGAIEPIFENPRASNFSVAPPT-SRSQRIVSSMAASIYRQVYSYPIDSKRAT 5909
            NL QQFS  GAI+P+  N  A+N  +APP  S+  +++ +MA  + R+ YSY +D+KRAT
Sbjct: 635  NLNQQFSDVGAIQPVIYNTNAANLKLAPPPLSKLNKVLDTMAQKLQRRFYSYVLDNKRAT 694

Query: 5908 AYMSDVKNNLTGLVLPKLSRETLSAWVALCEHSTRDVKLLVIHGAGGAGKSRCLQTMLLD 5729
            AYMSDVKNNLTGLVLPKL R  LSAWV+L E S R V +LVIHGAGGAGKSR +Q ML +
Sbjct: 695  AYMSDVKNNLTGLVLPKLDRNILSAWVSLAECSKRTVSVLVIHGAGGAGKSRAIQEMLRN 754

Query: 5728 HPALAEDVNIITPTVNLVLDWRKKNPQIDPRRFITFEKACEREGREVVIFDDYGKLPAGY 5549
            H  +A++ N++ PTVNLVLDW+ K P++DP+ F+TFEKACEREG+EVVIFDDYGKLPAGY
Sbjct: 755  HGEVADNTNVVVPTVNLVLDWKSKLPEVDPKHFMTFEKACEREGKEVVIFDDYGKLPAGY 814

Query: 5548 IDAYLAIKPTVEMIILTGDQRQSTHHCTNRDAQTANIQNNVHHFRRYCDYYINATHRQPR 5369
            IDAYL+IKPTVE +ILTGDQRQS HH TNR+AQTAN++ NV HF RYCDYY+NATHRQP+
Sbjct: 815  IDAYLSIKPTVETVILTGDQRQSVHHATNREAQTANLKTNVQHFSRYCDYYVNATHRQPQ 874

Query: 5368 RLANPIEVHAEQEAGGAVTHASIIPENCTALVPSHRSQAVLADLGRVAYTYSGCQGLTLN 5189
            RLANPI+VHAE++ GGAV  A++IP+  T LVPS  +Q  L  LGR A  YSGCQGLTL 
Sbjct: 875  RLANPIQVHAERKTGGAVHRANLIPDTATVLVPSFTTQQSLNGLGRRALAYSGCQGLTLP 934

Query: 5188 HVTIVLDADTPLCSPEVLYTAFSRAASTITFVNTHSEHPQFLRKLDATPYLKTLISGVRE 5009
            HVTIVLD DTPLCS EVLYTAFSRA  +ITFVNTHS+HP FL KLD+TPYLKTL+SGVRE
Sbjct: 935  HVTIVLDNDTPLCSNEVLYTAFSRAPESITFVNTHSDHPDFLAKLDSTPYLKTLLSGVRE 994

Query: 5008 DEDAGKDVSPEEPQAPKPSVKTHLPVENDATFLEPKIEAMLDKDVRELWDGREKTNLMQT 4829
            DE AGKD    +P+  +P +KTHLPV N  T+LE K+E M DKD RELWDG+EKTNLMQT
Sbjct: 995  DEQAGKDDPLPKPEVREPMIKTHLPVANLETYLEDKVEQMEDKDTRELWDGKEKTNLMQT 1054

Query: 4828 QDPVVQLFPHQQAKDEALFRITIDKRIKTATVDENTKAIVGRLHAGDLLFEAYAKFMRVP 4649
            QDPVVQLFPHQQAKDEALF++TI++RI+TAT  EN+K++   L AGDLLFEAY+ FMRVP
Sbjct: 1055 QDPVVQLFPHQQAKDEALFKLTIEQRIRTATPAENSKSVQHTLQAGDLLFEAYSDFMRVP 1114

Query: 4648 KEPQPFDPELWRHCRQLALRTYLSKPKANLVQGTARQDPDFPDNAIALFNKSQWVKKLEK 4469
            KEPQ F+P+LW HC+QLALRTY+SKP+ NL QG  RQDPDFP+NAIALFNKSQWVKKLEK
Sbjct: 1115 KEPQTFNPDLWEHCKQLALRTYVSKPRNNLEQGKTRQDPDFPENAIALFNKSQWVKKLEK 1174

Query: 4468 VGFKFKAGQTISAFKQSTVLLTTTMALYLRKKREQHQPENVFIMCEKTPADFNDFVTNRW 4289
            VGFKFKAGQTISAFKQSTVLLTTTMALYLRKKR +HQP+NVFIMCEKTPA+FNDFV NRW
Sbjct: 1175 VGFKFKAGQTISAFKQSTVLLTTTMALYLRKKRLEHQPQNVFIMCEKTPAEFNDFVLNRW 1234

Query: 4288 DFSCDSYTSDYEQYDQSQDASFLNFELRKAKHLGVPDSVTDFYRFIKTHARTFIGNLAIM 4109
            DF   SYTSDY QYDQSQDA+FLNFELRKA+HLGVP+ V DFY+FIK HA+TF+GNLAIM
Sbjct: 1235 DFKTPSYTSDYTQYDQSQDAAFLNFELRKARHLGVPEEVLDFYKFIKIHAKTFVGNLAIM 1294

Query: 4108 RLSGEGPTFDANTECNIAYDALRFQLTDTVNACYAGDDLVRDKVCEERASWSFSQHLFEL 3929
            RLSGEGPTFDANTECNIAYDALRF+L  TVNACYAGDDLVRD+VC+ER  W  S+HLF L
Sbjct: 1295 RLSGEGPTFDANTECNIAYDALRFKLAPTVNACYAGDDLVRDQVCDERPGWQLSKHLFTL 1354

Query: 3928 TAKPQSTRKPDFCGWRLTPYGIVKNPTQLYQSLQLALHLNKMEDVKRSYAIDYTHAYRLQ 3749
             AKP +T  PDFCGWRLTP+GIVK+P QLYQSLQLAL LNKME+VKRSYAIDY++AY+L 
Sbjct: 1355 QAKPLTTTTPDFCGWRLTPHGIVKSPIQLYQSLQLALRLNKMEEVKRSYAIDYSYAYKLG 1414

Query: 3748 DRLFEIFDEKEIAAHHLTTRLLIKHGVRTAHTGDHLPMFHVTSDRLIQDPDAIRVEDSAG 3569
            D+L E+F+E+E+ AH LTTR+ +K G++   TGDHLP F+V SDRLI +P    + DS  
Sbjct: 1415 DKLHEVFNEQELDAHQLTTRIFVKKGLKIPETGDHLPQFNVVSDRLITNPHYKEMHDSTS 1474

Query: 3568 SRSIVSSVQIQEDH 3527
             R+++S  +IQED+
Sbjct: 1475 DRTLLSEFEIQEDY 1488



 Score =  651 bits (1680), Expect = 0.0
 Identities = 324/457 (70%), Positives = 371/457 (81%), Gaps = 6/457 (1%)
 Frame = -2

Query: 8653 MATRVVKLLEAVTDPSTKAAHSELCFKYAKEAAHNAMRLAPFVVSDTEATTLERMGITTS 8474
            MAT+V +LL+ V+DPSTKAA+SELCF  AK+AA  A  LAPF VSD EA TLER+GITTS
Sbjct: 1    MATQVRRLLDQVSDPSTKAAYSELCFSRAKDAAAKAATLAPFAVSDAEAVTLERLGITTS 60

Query: 8473 PFATTPHTHAGDKIIENDCLSIIGHYLPKEPVTFIQLKKGKLHLLNRAPKQDVLANYCHE 8294
            PFATT HTHA DKI+ENDCL++IGHYLPK+PVTFIQLKK KLHLL+R P QD L NYCHE
Sbjct: 61   PFATTSHTHAADKILENDCLALIGHYLPKDPVTFIQLKKSKLHLLHRGPDQDTLTNYCHE 120

Query: 8293 PKDVLRYGITNPDYCPRVDTQTAVIADTLHFMSTRQLTQLFLCNPNLCTVFATLVLPIEA 8114
            PKDVLRYGITNP  CP++ TQ AV+ADTLHFMST QL  LF  NP L  +FATLVLPIEA
Sbjct: 121  PKDVLRYGITNPHSCPKIQTQYAVLADTLHFMSTMQLAVLFNKNPTLDRLFATLVLPIEA 180

Query: 8113 LHKLPSLFPEIYRLEYYKKHFAYMPGGHGGGAYVHSYETLKWLSTGQIGQSYTNPRL--- 7943
            LH+LPSLFPE+YRLEYY+ HFAYMPGGHGGGAYVHSY TLKWLSTGQ+G     P L   
Sbjct: 181  LHRLPSLFPEVYRLEYYENHFAYMPGGHGGGAYVHSYATLKWLSTGQVGTH--GPGLISF 238

Query: 7942 GTTDYISIEKIETKAAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQN 7763
            G TDY+SIEKIETKAAHH+MLI RR+A+ PWPL P+WVF  SDYVRLP +FYPPEANV+N
Sbjct: 239  GITDYLSIEKIETKAAHHVMLIQRRRARVPWPLPPVWVFQASDYVRLPHIFYPPEANVRN 298

Query: 7762 TYPHDLVKRMQAYCFSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGME 7583
            TY    VKR+QAYCFSVKAVSLRDIFAK+RQV+ET EL+RYSMADLIRLAN+LL  T M+
Sbjct: 299  TYQDVFVKRLQAYCFSVKAVSLRDIFAKIRQVVETQELRRYSMADLIRLANFLLFTTAMQ 358

Query: 7582 QVSDYECLLTKGWLAKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRG 7403
            QV DY+  LTKG+LA+LS RI+ R+R L E L G++SYAALLSV D IPVPFTT P  R 
Sbjct: 359  QVCDYQSFLTKGFLARLSARIQARIRSLTEGLMGQSSYAALLSVADTIPVPFTTKPISRP 418

Query: 7402 CDGISWLPEP-EEINRPPP--DEPGPTLEDLEMMADL 7301
              G  W  +P EE + P P  D   P+LEDL+++A+L
Sbjct: 419  AQGEDWYHDPDEEGDEPEPENDSSTPSLEDLDLLAEL 455


>ref|YP_009328892.1| RdRp [Arachis pintoi virus]
 gb|APG31850.1| RdRp [Arachis pintoi virus]
          Length = 1392

 Score = 1266 bits (3276), Expect = 0.0
 Identities = 631/987 (63%), Positives = 751/987 (76%), Gaps = 9/987 (0%)
 Frame = -2

Query: 6454 PRHPPTTSYPRQNQESPQTQSDANQEGNSAAEPEQDTSF-PNLDEAMFEPAREEYTTAGD 6278
            P   P+T    +  +S Q     +  G  A    +D       DE   +   +E     D
Sbjct: 414  PIRRPSTGLGWEAGDSDQEDPKEDMPGQDAGPDLEDLELVAQFDENPAKSGADEEGHRDD 473

Query: 6277 HDAAATRAEHHSSRSNPAADDSNIVLSSALEASDRLEPNT--SHIASAYP------HLSP 6122
            H       E     ++P +       +S+ +   R +PN   S+  +  P       L  
Sbjct: 474  HSQIVDELERALHTTSPPS-------ASSEDDDSREDPNKERSNCTAQLPGSTSGASLDT 526

Query: 6121 HQVEILAKHGFTNLKQQFSGTGAIEPIFENPRASNFSVAPPTSRSQRIVSSMAASIYRQV 5942
              VEIL  HGFT LK Q+ G   I+P++ NP      ++P    S   V+ +A SI R +
Sbjct: 527  PTVEILKLHGFTALKPQWDGESWIQPVYFNPTNGKLPISPLQDSSHE-VAKLAHSIRRNL 585

Query: 5941 YSYPIDSKRATAYMSDVKNNLTGLVLPKLSRETLSAWVALCEHSTRDVKLLVIHGAGGAG 5762
            Y Y +D+KRA +YMSDVKNNLTGLVLPKL R+ LSAWV+LCE++ R + +LVIHGAGGAG
Sbjct: 586  YQYTVDNKRAASYMSDVKNNLTGLVLPKLDRDKLSAWVSLCENAERHISILVIHGAGGAG 645

Query: 5761 KSRCLQTMLLDHPALAEDVNIITPTVNLVLDWRKKNPQIDPRRFITFEKACEREGREVVI 5582
            KSRCLQ  L D   LAE+VN+I PTVNLVLDW+KK   +DPRRF+TFEKACERE +EV I
Sbjct: 646  KSRCLQEALRDSKELAENVNVIVPTVNLVLDWKKKMNAMDPRRFMTFEKACEREAKEVAI 705

Query: 5581 FDDYGKLPAGYIDAYLAIKPTVEMIILTGDQRQSTHHCTNRDAQTANIQNNVHHFRRYCD 5402
            FDDYGKLPAGYIDAY+AIKPTVE++ILTGDQRQS +H  N+DAQTAN+ +NV HFR++CD
Sbjct: 706  FDDYGKLPAGYIDAYVAIKPTVEIVILTGDQRQSVYHNGNKDAQTANLTDNVTHFRKFCD 765

Query: 5401 YYINATHRQPRRLANPIEVHAEQEAGGAVTHASIIPENCTALVPSHRSQAVLADLGRVAY 5222
            YY+NATHRQPRR+ANPI+VHAE++ GGAVT A++I +  T LVP++R+Q+ L DLGR AY
Sbjct: 766  YYVNATHRQPRRIANPIKVHAERQFGGAVTMANLIQDKATVLVPAYRTQSALTDLGRQAY 825

Query: 5221 TYSGCQGLTLNHVTIVLDADTPLCSPEVLYTAFSRAASTITFVNTHSEHPQFLRKLDATP 5042
            TYSGCQGLT++ VTI LD DTPLCS EVLYTAFSRA+ +ITFVNTHS++P FL KLD+TP
Sbjct: 826  TYSGCQGLTISDVTIALDNDTPLCSNEVLYTAFSRASESITFVNTHSDNPDFLAKLDSTP 885

Query: 5041 YLKTLISGVREDEDAGKDVSPEEPQAPKPSVKTHLPVENDATFLEPKIEAMLDKDVRELW 4862
            YLKTLI+GVREDE AG    P E    +P VKTHLPV N    LE KIEA+ DKD RELW
Sbjct: 886  YLKTLITGVREDERAGHAEPPAETTPQEPEVKTHLPVTNGDVALEEKIEAVEDKDTRELW 945

Query: 4861 DGREKTNLMQTQDPVVQLFPHQQAKDEALFRITIDKRIKTATVDENTKAIVGRLHAGDLL 4682
            DG+EKTNLMQTQDP++QLFPHQQAKDE LF++TI+KRI+TA+  EN KAI    +AGDLL
Sbjct: 946  DGQEKTNLMQTQDPIIQLFPHQQAKDEPLFKLTIEKRIRTASASENQKAIAKSCNAGDLL 1005

Query: 4681 FEAYAKFMRVPKEPQPFDPELWRHCRQLALRTYLSKPKANLVQGTARQDPDFPDNAIALF 4502
            FEAYA FM+VPKEPQ FD +LW HC+QLALRTYLSKP +NL QG  RQDPDFP+ AIALF
Sbjct: 1006 FEAYADFMKVPKEPQNFDRDLWLHCKQLALRTYLSKPTSNLQQGATRQDPDFPEAAIALF 1065

Query: 4501 NKSQWVKKLEKVGFKFKAGQTISAFKQSTVLLTTTMALYLRKKREQHQPENVFIMCEKTP 4322
            NKSQWVKKLEKVGFKFK GQTISAFKQSTVLLTTTMALYLRKKRE+HQP+NVFIMCEKTP
Sbjct: 1066 NKSQWVKKLEKVGFKFKPGQTISAFKQSTVLLTTTMALYLRKKREEHQPDNVFIMCEKTP 1125

Query: 4321 ADFNDFVTNRWDFSCDSYTSDYEQYDQSQDASFLNFELRKAKHLGVPDSVTDFYRFIKTH 4142
              FNDFV  RWDFS  SYTSDYEQYDQSQDA+FLNFELRKA+HLGVP+ +  FY+F+K H
Sbjct: 1126 DQFNDFVITRWDFSRPSYTSDYEQYDQSQDAAFLNFELRKARHLGVPEEILSFYKFVKIH 1185

Query: 4141 ARTFIGNLAIMRLSGEGPTFDANTECNIAYDALRFQLTDTVNACYAGDDLVRDKVCEERA 3962
            A+TF+GNLAIMRLSGEGPTFDANTECNIAYDALRF+L   VNACYAGDDLVRDKVC+ER 
Sbjct: 1186 AKTFVGNLAIMRLSGEGPTFDANTECNIAYDALRFRLDTNVNACYAGDDLVRDKVCDERP 1245

Query: 3961 SWSFSQHLFELTAKPQSTRKPDFCGWRLTPYGIVKNPTQLYQSLQLALHLNKMEDVKRSY 3782
            SW ++QHLF L AKP +T KPDFCGWRLT YGI+K+P QLYQSLQLAL LNKM++V+RSY
Sbjct: 1246 SWQYTQHLFSLKAKPLATNKPDFCGWRLTKYGIIKSPIQLYQSLQLALRLNKMDEVRRSY 1305

Query: 3781 AIDYTHAYRLQDRLFEIFDEKEIAAHHLTTRLLIKHGVRTAHTGDHLPMFHVTSDRLIQD 3602
            AIDY +AYRLQD+LFE+FDE+E+  H L TRLLIK G R    G+HLPM HVTSDRLI++
Sbjct: 1306 AIDYQYAYRLQDKLFEVFDEREMDHHQLATRLLIKKGARVPDIGNHLPMHHVTSDRLIRN 1365

Query: 3601 PDAIRVEDSAGSRSIVSSVQIQEDHFS 3521
            P    + D+   R  + +  + E+HF+
Sbjct: 1366 PHYKEMHDAESDRIYMVAPSLTENHFT 1392



 Score =  685 bits (1768), Expect = 0.0
 Identities = 339/454 (74%), Positives = 376/454 (82%), Gaps = 5/454 (1%)
 Frame = -2

Query: 8653 MATRVVKLLEAVTDPSTKAAHSELCFKYAKEAAHNAMRLAPFVVSDTEATTLERMGITTS 8474
            MAT V KLL+ V+DPSTKAA+SELCFK+AK+AA  A R+APF V+D EA TLER+GITTS
Sbjct: 1    MATSVRKLLDQVSDPSTKAAYSELCFKHAKDAATKAQRVAPFAVTDQEALTLERLGITTS 60

Query: 8473 PFATTPHTHAGDKIIENDCLSIIGHYLPKEPVTFIQLKKGKLHLLNRAPKQDVLANYCHE 8294
            PFATT HTHAGDKIIENDCLS+IG YLPK  VT IQLK+ K+HL+NR P QDV ANYCHE
Sbjct: 61   PFATTSHTHAGDKIIENDCLSLIGSYLPKAAVTMIQLKRSKIHLMNRGPNQDVFANYCHE 120

Query: 8293 PKDVLRYGITNPDYCPRVDTQTAVIADTLHFMSTRQLTQLFLCNPNLCTVFATLVLPIEA 8114
            PKDVLRYGITNP  CPRV T+ AV+ADTLHFMST+QL  LFL NP L  +FATLVLPIEA
Sbjct: 121  PKDVLRYGITNPGACPRVHTEYAVLADTLHFMSTKQLLTLFLKNPKLQRLFATLVLPIEA 180

Query: 8113 LHKLPSLFPEIYRLEYYKKHFAYMPGGHGGGAYVHSYETLKWLSTGQIGQSYTNP-RLGT 7937
            LH+LPSLFPEIYRLEYYK+HFAYMPGGHGGGAYVHSY TL WLSTGQ+G    N   +G 
Sbjct: 181  LHRLPSLFPEIYRLEYYKEHFAYMPGGHGGGAYVHSYATLNWLSTGQVGTHTNNVLSVGY 240

Query: 7936 TDYISIEKIETKAAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTY 7757
             DY+S+EKIETKAAHH+MLI RR+   PWP+APLWVFH SDYVRLP V+YPPEANVQNTY
Sbjct: 241  PDYLSLEKIETKAAHHVMLIQRRRVNVPWPVAPLWVFHASDYVRLPQVYYPPEANVQNTY 300

Query: 7756 PHDLVKRMQAYCFSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQV 7577
            PHDL+KRMQAYC SVKAVSLRDIFAKLRQVIET +LKRYSMADLIRLANYLLL T ME V
Sbjct: 301  PHDLIKRMQAYCLSVKAVSLRDIFAKLRQVIETQDLKRYSMADLIRLANYLLLTTAMEHV 360

Query: 7576 SDYECLLTKGWLAKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCD 7397
            SDYECLLTKGW+AKLS RI+ RVR + ES+RGKTSY+ALLSV DVIPVPFTT P  R   
Sbjct: 361  SDYECLLTKGWVAKLSARIQMRVRSMLESIRGKTSYSALLSVADVIPVPFTTVPIRRPST 420

Query: 7396 GISWLPEPEEINRPPPDEP----GPTLEDLEMMA 7307
            G+ W     +   P  D P    GP LEDLE++A
Sbjct: 421  GLGWEAGDSDQEDPKEDMPGQDAGPDLEDLELVA 454


>gb|APG31855.1| RdRp [Arachis pintoi virus]
          Length = 1392

 Score = 1266 bits (3275), Expect = 0.0
 Identities = 639/992 (64%), Positives = 762/992 (76%), Gaps = 18/992 (1%)
 Frame = -2

Query: 6442 PTTSYPRQNQESPQTQSDANQEGNSAAEPEQDT----SFPNLDE----AMFE--PAREEY 6293
            P T+ P +    P T  D   E  +  EP +D     + PNL++    A FE  PAR   
Sbjct: 409  PFTTIPIRR---PSTGLDWEVEEANQEEPREDMPGPETGPNLEDLELVAQFEENPARNSA 465

Query: 6292 TTAG---DHDAAATRAEHHSSRSNP---AADDSNIVLSSALEASDRL-EPNTS-HIASAY 6137
               G   DH       E       P   +++D N   +   E SD   +P+ S ++AS  
Sbjct: 466  AEDGHGKDHSQVVDELEKALYAEKPPSSSSEDDNPPENPNGEQSDHTAQPSESANVAS-- 523

Query: 6136 PHLSPHQVEILAKHGFTNLKQQFSGTGAIEPIFENPRASNFSVAPPTSRSQRIVSSMAAS 5957
              L    VEIL  HGFT L  Q+ G   I+P++ NP      V+P    S   V+ +A S
Sbjct: 524  --LDKPTVEILKLHGFTALTPQWDGESWIQPVYFNPSNGKLPVSP-LQDSNHDVAKLAHS 580

Query: 5956 IYRQVYSYPIDSKRATAYMSDVKNNLTGLVLPKLSRETLSAWVALCEHSTRDVKLLVIHG 5777
            I R +Y Y +D+KRA +YMSDVKNNLTGLVLPKL R+ LSAWV+LCE++ R V +LVIHG
Sbjct: 581  IKRNLYQYAVDNKRAASYMSDVKNNLTGLVLPKLDRDKLSAWVSLCENAERHVSILVIHG 640

Query: 5776 AGGAGKSRCLQTMLLDHPALAEDVNIITPTVNLVLDWRKKNPQIDPRRFITFEKACEREG 5597
            AGGAGKSRCLQ  L +   LAE+VN+I PTVNLVLDW+KK   +DPRRF+TFEKACERE 
Sbjct: 641  AGGAGKSRCLQEALRNSKELAENVNVIVPTVNLVLDWKKKMNSMDPRRFMTFEKACEREA 700

Query: 5596 REVVIFDDYGKLPAGYIDAYLAIKPTVEMIILTGDQRQSTHHCTNRDAQTANIQNNVHHF 5417
            +EV +FDDYGKLPAGY+DAY+AIKPTVE++ILTGDQRQS +H  N+DAQTAN+ +NV HF
Sbjct: 701  KEVAVFDDYGKLPAGYVDAYIAIKPTVEIVILTGDQRQSVYHNGNKDAQTANLTDNVTHF 760

Query: 5416 RRYCDYYINATHRQPRRLANPIEVHAEQEAGGAVTHASIIPENCTALVPSHRSQAVLADL 5237
            R++CDYY+NATHRQPRR+ANPI+VHAE++ GGAVT A++I +  T LVP++R+Q+ L DL
Sbjct: 761  RKFCDYYVNATHRQPRRIANPIKVHAERQFGGAVTMANLIQDKATVLVPAYRTQSALTDL 820

Query: 5236 GRVAYTYSGCQGLTLNHVTIVLDADTPLCSPEVLYTAFSRAASTITFVNTHSEHPQFLRK 5057
            GR AYTYSGCQGLT++ VTI LD DTPLCS EVLYTAFSRA+ +ITFVNTHS++P FL K
Sbjct: 821  GRQAYTYSGCQGLTISDVTIALDNDTPLCSNEVLYTAFSRASESITFVNTHSDNPDFLAK 880

Query: 5056 LDATPYLKTLISGVREDEDAGKDVSPEEPQAPKPSVKTHLPVENDATFLEPKIEAMLDKD 4877
            LD+TPYLKTLI+GVREDE AG    P E    +P VKTHLPV N    LE KIEA+ DKD
Sbjct: 881  LDSTPYLKTLITGVREDEKAGHAEPPAEAAPQEPEVKTHLPVANGNVALEEKIEAVEDKD 940

Query: 4876 VRELWDGREKTNLMQTQDPVVQLFPHQQAKDEALFRITIDKRIKTATVDENTKAIVGRLH 4697
             RELWDG+EKTNLMQTQDPV+QLFPHQQAKDE LF++TI+KRI+TA+  EN +AI+   +
Sbjct: 941  TRELWDGQEKTNLMQTQDPVIQLFPHQQAKDEPLFKLTIEKRIRTASASENQRAIIKSCN 1000

Query: 4696 AGDLLFEAYAKFMRVPKEPQPFDPELWRHCRQLALRTYLSKPKANLVQGTARQDPDFPDN 4517
            AGDLLFEAYA FM+VPKEPQ FD +LW HC+QLALRTYLSKP +NL QG  RQDPDFP+ 
Sbjct: 1001 AGDLLFEAYADFMKVPKEPQNFDRDLWLHCKQLALRTYLSKPTSNLQQGATRQDPDFPEA 1060

Query: 4516 AIALFNKSQWVKKLEKVGFKFKAGQTISAFKQSTVLLTTTMALYLRKKREQHQPENVFIM 4337
            AIALFNKSQWVKKLEKVGFKFK GQTISAFKQSTVLLTTTMALYLRKKRE+HQP+NVFIM
Sbjct: 1061 AIALFNKSQWVKKLEKVGFKFKPGQTISAFKQSTVLLTTTMALYLRKKREEHQPDNVFIM 1120

Query: 4336 CEKTPADFNDFVTNRWDFSCDSYTSDYEQYDQSQDASFLNFELRKAKHLGVPDSVTDFYR 4157
            CEKTP  FNDFV  RWDFS  SYTSDYEQYDQSQDA+FLNFELRKA+HLGVP+ +  FY+
Sbjct: 1121 CEKTPDQFNDFVMTRWDFSRPSYTSDYEQYDQSQDAAFLNFELRKARHLGVPEEILSFYK 1180

Query: 4156 FIKTHARTFIGNLAIMRLSGEGPTFDANTECNIAYDALRFQLTDTVNACYAGDDLVRDKV 3977
            F+K HA+TF+GNLAIMRLSGEGPTFDANTECNIAYDALRF L + VNACYAGDDLVRD+V
Sbjct: 1181 FVKIHAKTFVGNLAIMRLSGEGPTFDANTECNIAYDALRFHLDNNVNACYAGDDLVRDRV 1240

Query: 3976 CEERASWSFSQHLFELTAKPQSTRKPDFCGWRLTPYGIVKNPTQLYQSLQLALHLNKMED 3797
            C+ER SW ++QHLF L AKP +T KPDFCGWRLT YGI+K+P QLYQSLQLAL LNKM++
Sbjct: 1241 CDERPSWQYTQHLFSLRAKPLATNKPDFCGWRLTKYGIIKSPVQLYQSLQLALRLNKMDE 1300

Query: 3796 VKRSYAIDYTHAYRLQDRLFEIFDEKEIAAHHLTTRLLIKHGVRTAHTGDHLPMFHVTSD 3617
            V+RSYAIDY +AYRLQD+LFE+FDE+E+  H L TRLLIK G +    G+HLPM HVTSD
Sbjct: 1301 VRRSYAIDYQYAYRLQDKLFEVFDEREMDHHQLATRLLIKKGAQVPDIGNHLPMHHVTSD 1360

Query: 3616 RLIQDPDAIRVEDSAGSRSIVSSVQIQEDHFS 3521
            RLI++P    + D+   R  + +  + E+HF+
Sbjct: 1361 RLIKNPHYREMHDAESDRIYMVAPSLTENHFT 1392



 Score =  686 bits (1770), Expect = 0.0
 Identities = 341/456 (74%), Positives = 379/456 (83%), Gaps = 7/456 (1%)
 Frame = -2

Query: 8653 MATRVVKLLEAVTDPSTKAAHSELCFKYAKEAAHNAMRLAPFVVSDTEATTLERMGITTS 8474
            MAT V KLL+ V+DPSTKAA+SELCFK+AK+AA  A R+APF V+D EA TLER+GITTS
Sbjct: 1    MATSVRKLLDQVSDPSTKAAYSELCFKHAKDAATKAQRVAPFAVTDQEALTLERLGITTS 60

Query: 8473 PFATTPHTHAGDKIIENDCLSIIGHYLPKEPVTFIQLKKGKLHLLNRAPKQDVLANYCHE 8294
            PFATT HTHAGDKIIENDCLS+IG YLPK  VT IQLK+ K+HL+NR P QDV ANYCHE
Sbjct: 61   PFATTSHTHAGDKIIENDCLSLIGSYLPKTAVTMIQLKRSKIHLMNRGPNQDVFANYCHE 120

Query: 8293 PKDVLRYGITNPDYCPRVDTQTAVIADTLHFMSTRQLTQLFLCNPNLCTVFATLVLPIEA 8114
            PKDVLRYGITNP  CPRV T+ AV+ADTLHFMST+QL  LFL NP L  +FATLVLPIEA
Sbjct: 121  PKDVLRYGITNPGSCPRVHTEYAVLADTLHFMSTKQLLALFLKNPKLQKLFATLVLPIEA 180

Query: 8113 LHKLPSLFPEIYRLEYYKKHFAYMPGGHGGGAYVHSYETLKWLSTGQIGQSYTNP-RLGT 7937
            LH+LPSLFPEIYRLEYYK+HFAYMPGGHGGGAYVHSY TL WLSTGQ+G    N   +G 
Sbjct: 181  LHRLPSLFPEIYRLEYYKEHFAYMPGGHGGGAYVHSYATLNWLSTGQVGTHTNNVISVGY 240

Query: 7936 TDYISIEKIETKAAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTY 7757
             DY+S+EKIETKAAHH+MLI RR+   PWP++PLWVFH SDYVRLP V+YPPEANVQNTY
Sbjct: 241  PDYLSLEKIETKAAHHVMLIQRRRTNVPWPVSPLWVFHASDYVRLPQVYYPPEANVQNTY 300

Query: 7756 PHDLVKRMQAYCFSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQV 7577
            PHDL+KRMQAYC SVKAVSLRDIFAKLRQVIET +LKRYSMADLIRLANYLLL T ME V
Sbjct: 301  PHDLIKRMQAYCLSVKAVSLRDIFAKLRQVIETQDLKRYSMADLIRLANYLLLTTAMEHV 360

Query: 7576 SDYECLLTKGWLAKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCD 7397
            SDYECLLTKGW+AKLS RI+ RVR + ES+RGKTSY+ALLSV DVIPVPFTT P  R   
Sbjct: 361  SDYECLLTKGWVAKLSARIQMRVRGMLESIRGKTSYSALLSVADVIPVPFTTIPIRRPST 420

Query: 7396 GISWLPEPEEINRPPP------DEPGPTLEDLEMMA 7307
            G+ W  E EE N+  P       E GP LEDLE++A
Sbjct: 421  GLDW--EVEEANQEEPREDMPGPETGPNLEDLELVA 454


>ref|YP_009362668.1| RdRP [Alfalfa virus S]
 gb|ARQ03275.1| RdRP [Alfalfa virus S]
          Length = 1657

 Score = 1241 bits (3210), Expect = 0.0
 Identities = 609/910 (66%), Positives = 717/910 (78%), Gaps = 1/910 (0%)
 Frame = -2

Query: 6274 DAAATRAEHHSSRSNPAADDSNIVLSSALEASDRLEPNTSHIASAYPHLSPHQVEILAKH 6095
            D+   RA    S   PA    N+  +   + +   E   +  ++++P      +EIL  H
Sbjct: 741  DSHFDRATRKHSPDQPAT--LNVAETKQPDDTQAEERAATPKSNSFPPFPRATIEILQIH 798

Query: 6094 GFTNLKQQFSGTGAIEPIFENPRASNFSVAPPTSRSQRI-VSSMAASIYRQVYSYPIDSK 5918
            GF NL+ Q  GTG I+P+  NP       + P+  +    +  +A  + R+VY Y +D+K
Sbjct: 799  GFKNLRPQSDGTGPIQPVHWNPNTQKLVASEPSEEAPHCYIYKLAERLKRKVYRYHVDNK 858

Query: 5917 RATAYMSDVKNNLTGLVLPKLSRETLSAWVALCEHSTRDVKLLVIHGAGGAGKSRCLQTM 5738
            RAT+YMSDVKNNLTGLVLPKL R TLSAWV+LCE+S+RDV +LVIHGAGGAGKSR LQ M
Sbjct: 859  RATSYMSDVKNNLTGLVLPKLDRATLSAWVSLCENSSRDVDVLVIHGAGGAGKSRALQEM 918

Query: 5737 LLDHPALAEDVNIITPTVNLVLDWRKKNPQIDPRRFITFEKACEREGREVVIFDDYGKLP 5558
            L     L E+VNII PT+ L  DW+ K   +DPRRF+TFEKACERE +E+ IFDDYGKLP
Sbjct: 919  LRSRSTLREEVNIILPTIVLAQDWKTKMTTMDPRRFMTFEKACERESKEIAIFDDYGKLP 978

Query: 5557 AGYIDAYLAIKPTVEMIILTGDQRQSTHHCTNRDAQTANIQNNVHHFRRYCDYYINATHR 5378
            AGYIDAY+AIKP VEMIILTGDQRQS HH  N DAQTA + +N+ HF RYCDYY+NATHR
Sbjct: 979  AGYIDAYIAIKPNVEMIILTGDQRQSVHHNANGDAQTAGLSSNIDHFSRYCDYYLNATHR 1038

Query: 5377 QPRRLANPIEVHAEQEAGGAVTHASIIPENCTALVPSHRSQAVLADLGRVAYTYSGCQGL 5198
            QPRRLANPI+VHAE+E GGAV  A+++P+  T LVPS  S+   +DLGR AYTY+GCQGL
Sbjct: 1039 QPRRLANPIQVHAEREFGGAVMRAALLPDKATILVPSQISRMTASDLGRKAYTYAGCQGL 1098

Query: 5197 TLNHVTIVLDADTPLCSPEVLYTAFSRAASTITFVNTHSEHPQFLRKLDATPYLKTLISG 5018
            TL HV I LD DTP CS EVLYTAFSRA+ +ITFVNT +E+P FL KLDATPYLKTL+SG
Sbjct: 1099 TLPHVVIALDKDTPGCSKEVLYTAFSRASESITFVNTFNENPAFLAKLDATPYLKTLLSG 1158

Query: 5017 VREDEDAGKDVSPEEPQAPKPSVKTHLPVENDATFLEPKIEAMLDKDVRELWDGREKTNL 4838
            VREDE  G+D  P E +  +P++KTHLPV ND TFL+  +EAM DKD RELW   EKTNL
Sbjct: 1159 VREDEWLGRDEPPTEYEPKEPNIKTHLPVANDETFLDDLVEAMEDKDTRELWSKFEKTNL 1218

Query: 4837 MQTQDPVVQLFPHQQAKDEALFRITIDKRIKTATVDENTKAIVGRLHAGDLLFEAYAKFM 4658
            MQT++ +VQLFPHQQAKDEALFR+TIDKRI+ A+ +EN KA+   L AG+LLFEAYA FM
Sbjct: 1219 MQTENKIVQLFPHQQAKDEALFRLTIDKRIRLASPEENEKAMARTLSAGNLLFEAYADFM 1278

Query: 4657 RVPKEPQPFDPELWRHCRQLALRTYLSKPKANLVQGTARQDPDFPDNAIALFNKSQWVKK 4478
            +VP +PQPFD +LW HC+QLA RTY+SKP +NL QG  RQDPDFP NAIALFNKSQWVKK
Sbjct: 1279 KVPADPQPFDRDLWEHCKQLAQRTYISKPTSNLQQGATRQDPDFPANAIALFNKSQWVKK 1338

Query: 4477 LEKVGFKFKAGQTISAFKQSTVLLTTTMALYLRKKREQHQPENVFIMCEKTPADFNDFVT 4298
            LEKVGFKFK GQTISAFKQSTVLLTTT ALYLRKKREQHQP+NVFIMCEKTP  FNDFV 
Sbjct: 1339 LEKVGFKFKPGQTISAFKQSTVLLTTTYALYLRKKREQHQPDNVFIMCEKTPNQFNDFVL 1398

Query: 4297 NRWDFSCDSYTSDYEQYDQSQDASFLNFELRKAKHLGVPDSVTDFYRFIKTHARTFIGNL 4118
             R+DFS  SYTSDYEQYDQSQD +FLNFELRKA+H GVP+ V +FYRFIK +A+TF+GNL
Sbjct: 1399 TRFDFSQPSYTSDYEQYDQSQDGAFLNFELRKARHFGVPEEVINFYRFIKLNAKTFLGNL 1458

Query: 4117 AIMRLSGEGPTFDANTECNIAYDALRFQLTDTVNACYAGDDLVRDKVCEERASWSFSQHL 3938
            AIMRLSGEGPTFDANTECNIAYDALRFQL D VNACYAGDDLVRD VC ER+SW +SQHL
Sbjct: 1459 AIMRLSGEGPTFDANTECNIAYDALRFQLHDAVNACYAGDDLVRDHVCPERSSWMYSQHL 1518

Query: 3937 FELTAKPQSTRKPDFCGWRLTPYGIVKNPTQLYQSLQLALHLNKMEDVKRSYAIDYTHAY 3758
            F L AKP++T KPDFCGWRLTP+GIVK+P QL  SL+LA+ L K+ED++RSYAIDY  AY
Sbjct: 1519 FSLVAKPKATLKPDFCGWRLTPFGIVKSPYQLKTSLELAIQLKKLEDMRRSYAIDYQFAY 1578

Query: 3757 RLQDRLFEIFDEKEIAAHHLTTRLLIKHGVRTAHTGDHLPMFHVTSDRLIQDPDAIRVED 3578
            +LQDRL++IFDEKE+ AH L TR+LIKHG  TAHTGDHLP FH+TSDRLI +P  I + D
Sbjct: 1579 KLQDRLYQIFDEKEMEAHQLVTRVLIKHGATTAHTGDHLPTFHITSDRLILNPHKIEMHD 1638

Query: 3577 SAGSRSIVSS 3548
            +AG R+ + +
Sbjct: 1639 AAGDRAYLET 1648



 Score =  660 bits (1702), Expect = 0.0
 Identities = 333/468 (71%), Positives = 378/468 (80%), Gaps = 12/468 (2%)
 Frame = -2

Query: 8653 MATRVVKLLEAVTDPSTKAAHSELCFKYAKEAAHNAMRLAPFVVSDTEATTLERMGITTS 8474
            MATRV KLL+ VTDPSTKAA+SELCFK+A+EAA  A +LAP+VVSD EA TLER+GITTS
Sbjct: 1    MATRVRKLLDEVTDPSTKAAYSELCFKHAREAAKQATKLAPYVVSDAEALTLERLGITTS 60

Query: 8473 PFATTPHTHAGDKIIENDCLSIIGHYLPKEPVTFIQLKKGKLHLLNRAPKQDVLANYCHE 8294
            PFATT HTHA DKI+ENDCLSIIGH LPK+P+TFIQLKKGKLHLLNR P QD L NYCHE
Sbjct: 61   PFATTSHTHASDKILENDCLSIIGHQLPKDPITFIQLKKGKLHLLNRGPGQDRLVNYCHE 120

Query: 8293 PKDVLRYGITNPDYCPRVDTQTAVIADTLHFMSTRQLTQLFLCNPNLCTVFATLVLPIEA 8114
            PKDVLRYGIT+P  CPRVDT+ AV+ADTLHFMST+QL  LF  NP L  +FATLVLPIEA
Sbjct: 121  PKDVLRYGITHPHVCPRVDTKYAVLADTLHFMSTKQLLHLFTQNPKLERLFATLVLPIEA 180

Query: 8113 LHKLPSLFPEIYRLEYYKKHFAYMPGGHGGGAYVHSYETLKWLSTGQIGQSYTNPRL--G 7940
            +H+LPSL+PEIY LEYY   FAYMPGGH GGAYVHSY TL+WL  GQIG ++TN  +  G
Sbjct: 181  VHRLPSLYPEIYYLEYYDDCFAYMPGGHAGGAYVHSYGTLRWLEVGQIG-THTNRYISTG 239

Query: 7939 TTDYISIEKIETKAAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNT 7760
             TDY+++EKIETKAAHHIML+ RR+    W LA  WVF  S +VRLPPVFYPPEANVQNT
Sbjct: 240  QTDYLTLEKIETKAAHHIMLVQRRRPNARWLLAQRWVFKASTFVRLPPVFYPPEANVQNT 299

Query: 7759 YPHDLVKRMQAYCFSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQ 7580
            YPHDL+KR Q YC  VKAVSLRDIF+K RQ+IET +L RYSMADLIRLANYLLL TGM+Q
Sbjct: 300  YPHDLIKRAQLYCLGVKAVSLRDIFSKFRQIIETTDLARYSMADLIRLANYLLLTTGMQQ 359

Query: 7579 VSDYECLLTKGWLAKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGC 7400
            VSDYECLLT G +AKLS +IR R  QL ESLRGK+SYAALL+VTDVIPVPFTT P V   
Sbjct: 360  VSDYECLLTSGLIAKLSAKIRIRFNQLLESLRGKSSYAALLTVTDVIPVPFTTKPKVYPA 419

Query: 7399 DGISWL---------PEPEEINRPPPDEP-GPTLEDLEMMADLHNAQR 7286
            +G SW          PE ++ + PP +   GPTLEDLE++AD+  A R
Sbjct: 420  EGESWFTGKTDEDSAPEIDDGSAPPEESAGGPTLEDLELIADMEKALR 467


>gb|AHB87051.1| putative RNA replicase, partial [Escobaria virus]
          Length = 851

 Score = 1230 bits (3183), Expect = 0.0
 Identities = 590/824 (71%), Positives = 691/824 (83%), Gaps = 6/824 (0%)
 Frame = -2

Query: 5971 SMAASIYRQVYSYPIDSKRATAYMSDVKNNLTGLVLPKLSRETLSAWVALCEHSTRDVKL 5792
            ++A  + R  Y+Y  +  RATAYMSDVKN LTGL+LPKL R+ L+AW++LCE + R+V L
Sbjct: 23   TLAQELMRSYYTYRNNQARATAYMSDVKNGLTGLLLPKLDRDKLAAWLSLCEQADREVAL 82

Query: 5791 LVIHGAGGAGKSRCLQTMLLDHPALAEDVNIITPTVNLVLDWRKKNPQIDPRRFITFEKA 5612
            LVIHGAGGAGKSR LQ ML D+P LAE+ N++ PTV LV+DW+ K   IDPRRF+TFEKA
Sbjct: 83   LVIHGAGGAGKSRALQQMLRDNPDLAENTNVVVPTVGLVMDWKAKMTTIDPRRFMTFEKA 142

Query: 5611 CEREGREVVIFDDYGKLPAGYIDAYLAIKPTVEMIILTGDQRQSTHHCTNRDAQTANIQN 5432
            CEREG+EVVIFDDYGKLPAG+IDAYL+IKP+  ++ILTGDQRQS +H TNR+AQ+A +++
Sbjct: 143  CEREGKEVVIFDDYGKLPAGFIDAYLSIKPSTRVVILTGDQRQSVYHTTNREAQSATLES 202

Query: 5431 NVHHFRRYCDYYINATHRQPRRLANPIEVHAEQEAGGAVTHASIIPENCTALVPSHRSQA 5252
            N   F ++CDYY+NATHRQPRRLANPI+VHAE++ GGAV H+++I +  T LVP+HRSQ 
Sbjct: 203  NTTFFAKWCDYYLNATHRQPRRLANPIKVHAEKQEGGAVRHSTLIGDRDTVLVPAHRSQV 262

Query: 5251 VLADLGRVAYTYSGCQGLTLNHVTIVLDADTPLCSPEVLYTAFSRAASTITFVNTHSEHP 5072
             L DLGR AYTYSGCQGLTL H+TIVLD DTPLCS EVLYT FSRA+ +ITFVNT+S++P
Sbjct: 263  ALTDLGRKAYTYSGCQGLTLPHITIVLDNDTPLCSTEVLYTVFSRASESITFVNTYSDNP 322

Query: 5071 QFLRKLDATPYLKTLISGVREDEDAGKDVSPEEPQAPKPSVKTHLPVENDATFLEPKIEA 4892
             FL KLDATPYLKTLISGVREDE+AGK    EEP+  +P VKTHLPVEN   FLE KIE 
Sbjct: 323  DFLSKLDATPYLKTLISGVREDENAGKTQKIEEPEVAEPPVKTHLPVENQDVFLEEKIEV 382

Query: 4891 MLDKDVRELWDGREKTNLMQTQDPVVQLFPHQQAKDEALFRITIDKRIKTATVDENTKAI 4712
            M DKD RELWDG EKTNLMQT++P+VQLFPHQQAKDEALF+ITI++RI+TA+ +EN K +
Sbjct: 383  MEDKDTRELWDGEEKTNLMQTENPIVQLFPHQQAKDEALFKITIEQRIRTASPEENVKQL 442

Query: 4711 VGRLHAGDLLFEAYAKFMRVPKEPQPFDPELWRHCRQLALRTYLSKPKANLVQGTARQDP 4532
            V +L  GDLLFEAYA FM+VP+EPQ FD ELWRHCRQLA RTYLSKPK NLVQG ARQDP
Sbjct: 443  VDKLRVGDLLFEAYADFMKVPREPQNFDLELWRHCRQLAERTYLSKPKNNLVQGAARQDP 502

Query: 4531 DFPDNAIALFNKSQWVKKLEKVGFKFKAGQTISAFKQSTVLLTTTMALYLRKKREQHQPE 4352
            DFPDNAIALFNKSQWVKKL+KVGFKFKAGQTISAFKQ TVLLTTT+ALYLRKKREQHQP+
Sbjct: 503  DFPDNAIALFNKSQWVKKLDKVGFKFKAGQTISAFKQQTVLLTTTLALYLRKKREQHQPD 562

Query: 4351 NVFIMCEKTPADFNDFVTNRWDFSCDSYTSDYEQYDQSQDASFLNFELRKAKHLGVPDSV 4172
            NVFIMCEKTP  FN+FV NRW+F   +YTSDY QYDQSQDA FLNFELRKA+HLGVP+ V
Sbjct: 563  NVFIMCEKTPEQFNEFVINRWNFDRPAYTSDYTQYDQSQDACFLNFELRKARHLGVPEEV 622

Query: 4171 TDFYRFIKTHARTFIGNLAIMRLSGEGPTFDANTECNIAYDALRFQLTDTVNACYAGDDL 3992
             +FYRFIKT+A+TF+GNLA+MRLSGEGPTFDANTECNIAYDALRFQL D V ACYAGDD+
Sbjct: 623  VNFYRFIKTNAKTFVGNLAVMRLSGEGPTFDANTECNIAYDALRFQLNDDVQACYAGDDI 682

Query: 3991 VRDKVCEERASWSFSQHLFELTAKPQSTRKPDFCGWRLTPYGIVKNPTQLYQSLQLALHL 3812
            VRD+ C ER SW ++QH F+L AKP  T +PDFCGWRLTPYGIVK+P QLYQSLQLAL L
Sbjct: 683  VRDQACPERPSWRYTQHAFQLQAKPLVTSRPDFCGWRLTPYGIVKSPIQLYQSLQLALQL 742

Query: 3811 NKMEDVKRSYAIDYTHAYRLQDRLFEIFDEKEIAAHHLTTRLLIKHGVRTAHTGDHLPMF 3632
             KMEDVKRSYAIDY +AY+L DRL+E+FDEKE+AAH L TR+++K G++ A  G H+P F
Sbjct: 743  GKMEDVKRSYAIDYAYAYQLGDRLYEVFDEKEMAAHQLVTRIMVKKGLKLASAGTHIPAF 802

Query: 3631 HVTSDRLIQDPDAIRVE------DSAGSRSIVSSVQIQEDHFSP 3518
            HVTSDRLI +P A+R E      D+   R   +  +I+EDHF P
Sbjct: 803  HVTSDRLINNPHALRNEHVVEMHDTTSHRVYDTLPEIREDHFIP 846


>ref|NP_659010.1| hypothetical protein GvEgp1 [Garlic virus E]
 emb|CAC83705.1| hypothetical protein [Garlic virus E]
          Length = 1557

 Score = 1225 bits (3170), Expect = 0.0
 Identities = 640/1091 (58%), Positives = 756/1091 (69%), Gaps = 24/1091 (2%)
 Frame = -2

Query: 6721 PASPQRGVTSNPHSAPKTRGPDDSALAFTFGSITPSMFQPDRAQPKPILSGQAAREGL-N 6545
            P   + G  +N  +      PDD  L         + F+     PK + +    R     
Sbjct: 433  PEEDEAGPPNNSLTGYPQPSPDDLDLL--------AEFEGHAMNPKTLSNNTRGRNDFPE 484

Query: 6544 VPAQTTTRRGPPTPDHSPPAGEAERSTASPPRHPPTTSYPRQNQESPQTQSDANQEGNSA 6365
             P   TT         S     A+++T +P    P  +     +      SD   E +S+
Sbjct: 485  CPVADTTAMNEEDTRRSHYEEHAKQATTTPNTEAPKEALTSDQEGYVTDWSD--DESSSS 542

Query: 6364 AEPEQDTSFPNLDEAMFE-PAREEYTTAGDHDAAATRAEHHSSRSNPAADDSNI------ 6206
             +P +    P  D+ +F+ P  E+     + DA     E      +P +D ++       
Sbjct: 543  VKPPESEGAPLEDDDLFDLPPLEDCADPVEADAQEHPDEVSVDLPSPDSDHAHTGERTLE 602

Query: 6205 -----VLSSAL---------EASDRLEPNTSHIASAYPHLSPHQVEILAKHGFTNLKQQF 6068
                 V   A          E  +R +P+          L    VE+L  HGFTN + Q+
Sbjct: 603  TPEDSVTGEAQNCDGSRHIDEPEERGQPSKQTCKVELTPLDADTVELLKLHGFTNYRAQY 662

Query: 6067 SGTGAIEPIFENPRASNFSV--APPTSRSQRIVSSMAASIYRQVYSYPIDSKRATAYMSD 5894
             G   I+PI+ NP A       A  T+  Q+ V  MA  + R+ Y Y +D+KRATA+MSD
Sbjct: 663  DGESQIQPIYRNPHAHFLRQYDAQTTTHQQQFVD-MAHGLKRRCYGYKVDAKRATAFMSD 721

Query: 5893 VKNNLTGLVLPKLSRETLSAWVALCEHSTRDVKLLVIHGAGGAGKSRCLQTMLLDHPALA 5714
            VKNNLTGLVLPKL R+ LS+WVAL E++TR V L+VIHGAGGAGKSR LQ +L +    A
Sbjct: 722  VKNNLTGLVLPKLDRDLLSSWVALAENATRTVGLIVIHGAGGAGKSRALQELLRNRVVDA 781

Query: 5713 EDVNIITPTVNLVLDWRKKNPQIDPRRFITFEKACEREGREVVIFDDYGKLPAGYIDAYL 5534
             +VNI+ PT+NL  DW+KK P +DPRR +TFEKACEREG+ VVI DDYGKLPAGY+DAYL
Sbjct: 782  NEVNIVVPTINLAADWKKKLPALDPRRVMTFEKACEREGKSVVIMDDYGKLPAGYVDAYL 841

Query: 5533 AIKPTVEMIILTGDQRQSTHHCTNRDAQTANIQNNVHHFRRYCDYYINATHRQPRRLANP 5354
            AIK  VE+I+LTGDQRQS +H   RD+Q A +  N  HF+RYCDYY+NATHRQPRRLANP
Sbjct: 842  AIKSNVELIVLTGDQRQSVYHNDKRDSQIALLSPNTEHFKRYCDYYVNATHRQPRRLANP 901

Query: 5353 IEVHAEQEAGGAVTHASIIPENCTALVPSHRSQAVLADLGRVAYTYSGCQGLTLNHVTIV 5174
            I VHAE+E GGAV HA++IP N   LVP+ RSQ++L DLGR A TY+GCQGLTL H+TIV
Sbjct: 902  IRVHAEREVGGAVKHATLIPTNAMTLVPAFRSQSLLTDLGRQAMTYAGCQGLTLPHLTIV 961

Query: 5173 LDADTPLCSPEVLYTAFSRAASTITFVNTHSEHPQFLRKLDATPYLKTLISGVREDEDAG 4994
            LD DTPLCS EVLYTA SRA+ TITFVNTHS++ +FL KLDATPYLKTLISGVREDE +G
Sbjct: 962  LDKDTPLCSDEVLYTALSRASETITFVNTHSDNKEFLAKLDATPYLKTLISGVREDEQSG 1021

Query: 4993 KDVSPEEPQAPKPSVKTHLPVENDATFLEPKIEAMLDKDVRELWDGREKTNLMQTQDPVV 4814
             D  P EPQ      KTH+PV N+   LE KIE M DKD RELW G EKTNLMQTQDPVV
Sbjct: 1022 GDYQPPEPQVRDGPTKTHMPVANNNIQLEEKIETMEDKDTRELWSGEEKTNLMQTQDPVV 1081

Query: 4813 QLFPHQQAKDEALFRITIDKRIKTATVDENTKAIVGRLHAGDLLFEAYAKFMRVPKEPQP 4634
            QLFPHQQ+KDEALF+ITI +RI+TA V  N KA+   L AGDLLFEAYAKFM VP+E QP
Sbjct: 1082 QLFPHQQSKDEALFKITIKERIRTADVGTNKKALCETLSAGDLLFEAYAKFMNVPQETQP 1141

Query: 4633 FDPELWRHCRQLALRTYLSKPKANLVQGTARQDPDFPDNAIALFNKSQWVKKLEKVGFKF 4454
            FD  LW HC+QLALRTYLSKP  NL QG  RQDPDFPDNAIALFNKSQWVKKLEKVG KF
Sbjct: 1142 FDKRLWAHCKQLALRTYLSKPTTNLQQGAQRQDPDFPDNAIALFNKSQWVKKLEKVGCKF 1201

Query: 4453 KAGQTISAFKQSTVLLTTTMALYLRKKREQHQPENVFIMCEKTPADFNDFVTNRWDFSCD 4274
            KAGQTISAFKQSTVLLTTTMALYLRKKRE HQP+NVF+MCEKTP  F+ FV  +WDFS  
Sbjct: 1202 KAGQTISAFKQSTVLLTTTMALYLRKKREGHQPDNVFVMCEKTPEQFDSFVLTKWDFSRP 1261

Query: 4273 SYTSDYEQYDQSQDASFLNFELRKAKHLGVPDSVTDFYRFIKTHARTFIGNLAIMRLSGE 4094
            +YTSDY QYDQSQDA+FLNFELRKA+H G+P+ V DFY FIKTHA+TF+GNLAIMRLSGE
Sbjct: 1262 NYTSDYTQYDQSQDAAFLNFELRKARHFGIPNEVVDFYAFIKTHAKTFLGNLAIMRLSGE 1321

Query: 4093 GPTFDANTECNIAYDALRFQLTDTVNACYAGDDLVRDKVCEERASWSFSQHLFELTAKPQ 3914
            GPTFDANTECNIAYDALRFQ+  TVNACYAGDDLVRDK CEER  W +++ LF L AKP 
Sbjct: 1322 GPTFDANTECNIAYDALRFQVDSTVNACYAGDDLVRDKACEERPGWKYAEPLFSLKAKPL 1381

Query: 3913 STRKPDFCGWRLTPYGIVKNPTQLYQSLQLALHLNKMEDVKRSYAIDYTHAYRLQDRLFE 3734
             T KPDFCGWRLT +GIVK+P QLYQSLQLAL L K+E+VKRSYAIDY  AYRL D+L++
Sbjct: 1382 VTNKPDFCGWRLTKFGIVKSPVQLYQSLQLALRLGKVEEVKRSYAIDYLFAYRLGDQLYD 1441

Query: 3733 IFDEKEIAAHHLTTRLLIKHGVRTAHTGDHLPMFHVTSDRLIQDPDAIRVEDSAGSRSIV 3554
            +FDE E+  H L TR LIK G+R   +GDHLP+FHVTSDRLI+DP A  +  +    S  
Sbjct: 1442 VFDENEMEKHQLVTRTLIKKGMRPPSSGDHLPVFHVTSDRLIRDPKAKHI-STYEYDSTS 1500

Query: 3553 SSVQIQEDHFS 3521
                I EDHF+
Sbjct: 1501 LPFNIVEDHFA 1511



 Score =  592 bits (1527), Expect = e-174
 Identities = 292/460 (63%), Positives = 348/460 (75%), Gaps = 12/460 (2%)
 Frame = -2

Query: 8647 TRVVKLLEAVTDPSTKAAHSELCFKYAKEAAHNAMRLAPFVVSDTEATTLERMGITTSPF 8468
            T V KLL+ ++DPS +AA+S+ C   AK AA  AM +AP+ V+ TEA TLER+GITTSPF
Sbjct: 2    TTVQKLLDQISDPSARAAYSQDCLSAAKTAATKAMTIAPYAVTPTEALTLERIGITTSPF 61

Query: 8467 ATTPHTHAGDKIIENDCLSIIGHYLPKEPVTFIQLKKGKLHLLNRAPKQDVLANYCHEPK 8288
            ATT HTHA DKIIENDCL IIG YLPKEPVT IQLK+ KLHLL R P  D+  NYCHEPK
Sbjct: 62   ATTSHTHAADKIIENDCLDIIGRYLPKEPVTLIQLKRAKLHLLRRGPSGDIFKNYCHEPK 121

Query: 8287 DVLRYGITNPDYCPRVDTQTAVIADTLHFMSTRQLTQLFLCNPNLCTVFATLVLPIEALH 8108
            DVLR+G+TNP  CP+VDT  AVI+DTLHFMST Q+  LF  NP L  ++ TLVLP+EALH
Sbjct: 122  DVLRFGLTNPHTCPQVDTACAVISDTLHFMSTHQVWTLFQNNPKLERLYGTLVLPVEALH 181

Query: 8107 KLPSLFPEIYRLEYYKKHFAYMPGGHGGGAYVHSYETLKWLSTGQIG-------QSYTNP 7949
            KLPSLFPEIY+LEYY++HFAYMPGG+GGGAY+HSY TLKWLST QIG       +   N 
Sbjct: 182  KLPSLFPEIYKLEYYERHFAYMPGGYGGGAYIHSYGTLKWLSTAQIGPGAYPGYRPPANG 241

Query: 7948 RLGTTDYISIEKIETKAAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANV 7769
            R    D++SIEKIETKAAHHI++I RR+ + PWPL P+WVFH SDYV+LP +FYP EANV
Sbjct: 242  RRPLLDHLSIEKIETKAAHHIVMIQRRRPELPWPLPPIWVFHASDYVKLPEIFYPAEANV 301

Query: 7768 QNTYPHDLVKRMQAYCFSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITG 7589
            Q  YPH  +KR+Q YCFSVKAVSLRDIFAK+RQVI T EL R+S ADLIRLANYLL ITG
Sbjct: 302  QKAYPHTFIKRLQLYCFSVKAVSLRDIFAKIRQVIPTEELARFSTADLIRLANYLLFITG 361

Query: 7588 MEQVSDYECLLTKGWLAKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCV 7409
            M+  SDY+  L +  L KL   IR RVR+ F+++ GK+SYAALL+VTDV P+ FTT P  
Sbjct: 362  MQSASDYQSPLMESLLGKLCLSIRARVREFFQNILGKSSYAALLTVTDVRPIHFTTKPQR 421

Query: 7408 RGCDGISWLPEPEEINRPPPDE-----PGPTLEDLEMMAD 7304
            RG  G  W   PEE    PP+      P P+ +DL+++A+
Sbjct: 422  RGICGEQWFDNPEEDEAGPPNNSLTGYPQPSPDDLDLLAE 461


>gb|AHA90833.1| replicase [Garlic virus D]
          Length = 1561

 Score = 1225 bits (3169), Expect = 0.0
 Identities = 621/1004 (61%), Positives = 727/1004 (72%), Gaps = 9/1004 (0%)
 Frame = -2

Query: 6502 DHSPPAGEAERSTASPPRH------PPTTSYPRQNQESPQTQSDANQEGNSAAEPEQDTS 6341
            D S P  +A +  A P         PP  S      + PQ   DA+      +E   +T 
Sbjct: 534  DESLPEEDAHKLDAQPSDDEDLFDLPPLESCSEHGDDRPQESLDADDGNIPNSEAWNETP 593

Query: 6340 FPNLDEAMFEPAREEYTTAGDH--DAAATRAEHHSSRSNPAADDSNIVLSSALEASDRLE 6167
                +    +P         DH  +   +R EH+S R       +         A  +L 
Sbjct: 594  ETRTEADEVDPRESCRDREKDHVNNCDGSRTEHNSERGEKPDKPA---------AKVKLH 644

Query: 6166 PNTSHIASAYPHLSPHQVEILAKHGFTNLKQQFSGTGAIEPIFENPRASNFSVAPPTS-R 5990
            P           L    VE+L  HGFTN + Q+ G   I+PIF NP     +    T+  
Sbjct: 645  P-----------LDDDTVELLKIHGFTNYRAQYDGEDQIQPIFRNPNTRTLTQFTTTAPE 693

Query: 5989 SQRIVSSMAASIYRQVYSYPIDSKRATAYMSDVKNNLTGLVLPKLSRETLSAWVALCEHS 5810
             QR    MA  + RQ Y Y I++KRATA+MSDVKNNLTGLVLPKL R+ LS+WV+L EH+
Sbjct: 694  PQRCFIEMAHGLKRQCYEYRINAKRATAFMSDVKNNLTGLVLPKLERDLLSSWVSLAEHA 753

Query: 5809 TRDVKLLVIHGAGGAGKSRCLQTMLLDHPALAEDVNIITPTVNLVLDWRKKNPQIDPRRF 5630
            TR V L+VIHGAGGAGKSR LQ +L        +VNI+ PT+NL  DW+KK P +DPRR 
Sbjct: 754  TRKVGLIVIHGAGGAGKSRALQELLRSQTVDTNEVNIVVPTINLAADWKKKIPAVDPRRV 813

Query: 5629 ITFEKACEREGREVVIFDDYGKLPAGYIDAYLAIKPTVEMIILTGDQRQSTHHCTNRDAQ 5450
            +TFEKACEREG+ VVI DDYGKLPAGY+DAYL+IK  VE+++LTGDQRQS +H   RD+Q
Sbjct: 814  MTFEKACEREGKPVVIMDDYGKLPAGYVDAYLSIKSNVELVVLTGDQRQSVYHNDKRDSQ 873

Query: 5449 TANIQNNVHHFRRYCDYYINATHRQPRRLANPIEVHAEQEAGGAVTHASIIPENCTALVP 5270
             A + +N  HF++YCDYY+NATHRQPRRLANPI+VHAE+E GGAV HA++IPE    LVP
Sbjct: 874  IALLSSNTDHFKKYCDYYVNATHRQPRRLANPIKVHAEREVGGAVKHATLIPETAMTLVP 933

Query: 5269 SHRSQAVLADLGRVAYTYSGCQGLTLNHVTIVLDADTPLCSPEVLYTAFSRAASTITFVN 5090
            + RSQ++L DLGR A TY+GCQGLTL H+TIVLD DTPLCS +V+YTA SRA+ TITFVN
Sbjct: 934  AFRSQSLLTDLGRQAMTYAGCQGLTLPHLTIVLDKDTPLCSDQVMYTALSRASETITFVN 993

Query: 5089 THSEHPQFLRKLDATPYLKTLISGVREDEDAGKDVSPEEPQAPKPSVKTHLPVENDATFL 4910
            THS++ +F  KLD+TPYLKTLISGVREDE  G D  P EP   +   KTH+PV ND   L
Sbjct: 994  THSDNREFQAKLDSTPYLKTLISGVREDELTGGDYKPPEPVVREGPTKTHMPVANDKIQL 1053

Query: 4909 EPKIEAMLDKDVRELWDGREKTNLMQTQDPVVQLFPHQQAKDEALFRITIDKRIKTATVD 4730
            E KIEAM DKD RELW G EKTNLMQTQDP+VQLFPHQQAKDEALF+ITI +R++TA  D
Sbjct: 1054 EEKIEAMEDKDTRELWSGEEKTNLMQTQDPIVQLFPHQQAKDEALFKITIKERVRTADAD 1113

Query: 4729 ENTKAIVGRLHAGDLLFEAYAKFMRVPKEPQPFDPELWRHCRQLALRTYLSKPKANLVQG 4550
             N KA+   L+AGDLLFEAYAKFM VP+E Q FD  LW HCRQLALRTYLSKP +NL QG
Sbjct: 1114 SNRKAMHETLNAGDLLFEAYAKFMNVPQETQAFDKRLWAHCRQLALRTYLSKPTSNLQQG 1173

Query: 4549 TARQDPDFPDNAIALFNKSQWVKKLEKVGFKFKAGQTISAFKQSTVLLTTTMALYLRKKR 4370
              RQDPDFPDNAIALFNKSQWVKKLEKVG KFKAGQTISAFKQSTVLLTTTMALYLRKKR
Sbjct: 1174 AQRQDPDFPDNAIALFNKSQWVKKLEKVGCKFKAGQTISAFKQSTVLLTTTMALYLRKKR 1233

Query: 4369 EQHQPENVFIMCEKTPADFNDFVTNRWDFSCDSYTSDYEQYDQSQDASFLNFELRKAKHL 4190
            E HQP NVF+MCEKTP  FN FV  RWDF   +YTSDY QYDQSQDA+FLNFELRKA+H 
Sbjct: 1234 EGHQPANVFVMCEKTPEQFNSFVLTRWDFKRPNYTSDYTQYDQSQDAAFLNFELRKARHF 1293

Query: 4189 GVPDSVTDFYRFIKTHARTFIGNLAIMRLSGEGPTFDANTECNIAYDALRFQLTDTVNAC 4010
            G+P  + DFY FIKTHA+TF+GNLAIMRLSGEGPTFDANTECNIAYDALRFQ+  TVNAC
Sbjct: 1294 GIPPEIVDFYAFIKTHAKTFLGNLAIMRLSGEGPTFDANTECNIAYDALRFQVDPTVNAC 1353

Query: 4009 YAGDDLVRDKVCEERASWSFSQHLFELTAKPQSTRKPDFCGWRLTPYGIVKNPTQLYQSL 3830
            YAGDDLVRDK CEER  W +++ LF L AKP  T KPDFCGWRLT YGIVK+P QLYQSL
Sbjct: 1354 YAGDDLVRDKACEERPGWKYAEPLFSLKAKPLVTNKPDFCGWRLTKYGIVKSPVQLYQSL 1413

Query: 3829 QLALHLNKMEDVKRSYAIDYTHAYRLQDRLFEIFDEKEIAAHHLTTRLLIKHGVRTAHTG 3650
            QLAL L K+E+VKRSYAIDY  AYRL D+L+++FDE E+  H L TR LIK G++   +G
Sbjct: 1414 QLALRLGKVEEVKRSYAIDYLFAYRLGDQLYDVFDENEMEKHQLVTRTLIKKGMQPPSSG 1473

Query: 3649 DHLPMFHVTSDRLIQDPDAIRVEDSAGSRSIVSSVQIQEDHFSP 3518
            DHLP+FHVTSDRLI+DP+A RV  +    S+    ++ +DHFSP
Sbjct: 1474 DHLPVFHVTSDRLIRDPNAKRV-STYEYDSVSLPFELIDDHFSP 1516



 Score =  585 bits (1507), Expect = e-171
 Identities = 292/458 (63%), Positives = 350/458 (76%), Gaps = 12/458 (2%)
 Frame = -2

Query: 8641 VVKLLEAVTDPSTKAAHSELCFKYAKEAAHNAMRLAPFVVSDTEATTLERMGITTSPFAT 8462
            V KLL+ ++DP+ +AA+S+ C   AK AA  AM +AP+ V+ TEA TLER+GITTSPFAT
Sbjct: 4    VQKLLDQISDPNARAAYSQDCLSAAKAAATKAMTIAPYAVNQTEALTLERIGITTSPFAT 63

Query: 8461 TPHTHAGDKIIENDCLSIIGHYLPKEPVTFIQLKKGKLHLLNRAPKQDVLANYCHEPKDV 8282
            T HTHA DKIIENDCL IIG YLPKEPVT IQLK+ KLHLL R P  D+  NYCHEPKDV
Sbjct: 64   TSHTHAADKIIENDCLDIIGRYLPKEPVTLIQLKRAKLHLLRRGPSGDIFKNYCHEPKDV 123

Query: 8281 LRYGITNPDYCPRVDTQTAVIADTLHFMSTRQLTQLFLCNPNLCTVFATLVLPIEALHKL 8102
            LR+GITNP  CP+VDT  AVI+DTLHFMST+Q+  LF  NPNL  ++ TLVLP+EALH+L
Sbjct: 124  LRFGITNPHVCPQVDTTCAVISDTLHFMSTQQVWTLFQDNPNLERLYGTLVLPVEALHRL 183

Query: 8101 PSLFPEIYRLEYYKKHFAYMPGGHGGGAYVHSYETLKWLSTGQIG-------QSYTNPRL 7943
            PSLFPEIY+LEYY +HFAYMPGGHGGGAYVHSY TLKWLST QIG       +S T+ R 
Sbjct: 184  PSLFPEIYKLEYYDQHFAYMPGGHGGGAYVHSYGTLKWLSTAQIGPGPYPEYRSSTSGRR 243

Query: 7942 GTTDYISIEKIETKAAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQN 7763
               D++S+EKIETKAAHHI+LI RR+ + PWPL P+WVFH SDYV+LP +FYP EANVQ 
Sbjct: 244  PLLDHLSVEKIETKAAHHIVLIQRRRPELPWPLPPVWVFHASDYVKLPEIFYPAEANVQK 303

Query: 7762 TYPHDLVKRMQAYCFSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGME 7583
             YPH  +KR+Q YCFSVKAVSLRDIFAK+RQVI T EL R+S ADLIRLANYLL ITGM+
Sbjct: 304  AYPHIFIKRLQLYCFSVKAVSLRDIFAKIRQVIPTEELARFSTADLIRLANYLLFITGMQ 363

Query: 7582 QVSDYECLLTKGWLAKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRG 7403
              SDY+  L +  L KL   IR RVR+ F+++ G++SYAALL+VTDV P+ FTT P  R 
Sbjct: 364  STSDYQSPLMESLLGKLCLSIRARVREFFQNILGRSSYAALLTVTDVRPIYFTTTPRRRK 423

Query: 7402 CDGISWLP--EPEEINRPPPDEPG---PTLEDLEMMAD 7304
              G +W    E EE N P  +  G   P+ +DL+++A+
Sbjct: 424  ICGEAWFDSLEEEESNPPTRNVTGYQQPSPDDLDLLAE 461


>gb|AGG13306.1| Replicase [Garlic virus X]
          Length = 1543

 Score = 1224 bits (3167), Expect = 0.0
 Identities = 633/1043 (60%), Positives = 753/1043 (72%), Gaps = 12/1043 (1%)
 Frame = -2

Query: 6613 MFQPDRAQPKPILSGQAAREGLNVPAQTTTRRGPPTPDHSPPAGEAERSTASPPRHPP-- 6440
            +  PD+ Q  PI++  +  E  N  A  +  R    P   PP    ++  +S        
Sbjct: 471  VLHPDQDQTTPIVTENSLEEPRNETAGPSIDRKRAQPSEQPPLTHGKQGASSDEAMVDGH 530

Query: 6439 ----TTSYPRQNQESPQTQSDANQEGNSAAE--PEQDTSFPNLDEAMFEPAREEYTTAGD 6278
                T S   Q++++  ++S+ +Q   +A +  P++D   P L+    E + E+      
Sbjct: 531  LTDWTDSDDDQSEKASDSESEDDQHQPTAEDLLPDED-DMPELESVPDEDSNEDDNADLA 589

Query: 6277 HDAAATRAEHHSSRSNPAADDSNIVLSSALEASDRLEPNTSHIASAYPHLSPHQVEILAK 6098
            +          S+ +N   + +N  L SA + + R+E            L    VEIL  
Sbjct: 590  NSHTDEEEGAPSNNTNQPGETAN-ELESASKTTSRVE---------LVPLDSETVEILKL 639

Query: 6097 HGFTNLKQQFSGTGAIEPIFENPRASNFSVAPP----TSRSQRIVSSMAASIYRQVYSYP 5930
            HGFTN K Q  G   I P+F N +A+   + PP    T+  Q     MA ++ R  YSY 
Sbjct: 640  HGFTNHKPQHDGDFQISPVFYNRQAN---LLPPYDGITNSVQSSFIQMAQALKRNCYSYK 696

Query: 5929 IDSKRATAYMSDVKNNLTGLVLPKLSRETLSAWVALCEHSTRDVKLLVIHGAGGAGKSRC 5750
            +D+KRATA+MSDVKNNLTGLVLPKL R+ L++WVAL E++ R V L+VIHGAGGAGKSR 
Sbjct: 697  LDAKRATAFMSDVKNNLTGLVLPKLDRDLLTSWVALSENAHRKVGLIVIHGAGGAGKSRA 756

Query: 5749 LQTMLLDHPALAEDVNIITPTVNLVLDWRKKNPQIDPRRFITFEKACEREGREVVIFDDY 5570
            LQ +L +      +VNII PT+NL  DW+KK P IDPRR +TFEKACEREG+ VVI DDY
Sbjct: 757  LQELLRNRSIDTNEVNIIVPTINLAADWKKKMPSIDPRRVMTFEKACEREGKSVVIMDDY 816

Query: 5569 GKLPAGYIDAYLAIKPTVEMIILTGDQRQSTHHCTNRDAQTANIQNNVHHFRRYCDYYIN 5390
            GKLPAGYIDAYLAIK  VE++ILTGDQRQS  +   +D+Q A +  N  HF+RYCDYYIN
Sbjct: 817  GKLPAGYIDAYLAIKFNVELVILTGDQRQSVFYNDKKDSQIALLTPNTVHFKRYCDYYIN 876

Query: 5389 ATHRQPRRLANPIEVHAEQEAGGAVTHASIIPENCTALVPSHRSQAVLADLGRVAYTYSG 5210
            ATHRQPRRLANPI+VHAE+E GGA+ H+++IP +   LVP+ RSQ++L DLGR A TY+G
Sbjct: 877  ATHRQPRRLANPIKVHAERETGGAIKHSTLIPPHAMTLVPAFRSQSLLTDLGRQAMTYAG 936

Query: 5209 CQGLTLNHVTIVLDADTPLCSPEVLYTAFSRAASTITFVNTHSEHPQFLRKLDATPYLKT 5030
            CQGLTL H+TIVLD DTPLCS EVLYTA SRA+ TITFVNTHS +  FL KLD+TPYLKT
Sbjct: 937  CQGLTLPHLTIVLDKDTPLCSDEVLYTALSRASETITFVNTHSNNKDFLDKLDSTPYLKT 996

Query: 5029 LISGVREDEDAGKDVSPEEPQAPKPSVKTHLPVENDATFLEPKIEAMLDKDVRELWDGRE 4850
            LISGVREDE AG + +P EP       KTH+PV ND   LE KIE M DKD RELW G E
Sbjct: 997  LISGVREDEQAGAEQTPPEPTVRDAPTKTHIPVANDKVQLEEKIETMEDKDTRELWSGEE 1056

Query: 4849 KTNLMQTQDPVVQLFPHQQAKDEALFRITIDKRIKTATVDENTKAIVGRLHAGDLLFEAY 4670
            KTNLMQTQDP++QLFPHQQAKDEALF+ITI++RI+ AT + N KA+   L+AGDLLFEAY
Sbjct: 1057 KTNLMQTQDPIIQLFPHQQAKDEALFKITINERIRLATPEANCKALKETLNAGDLLFEAY 1116

Query: 4669 AKFMRVPKEPQPFDPELWRHCRQLALRTYLSKPKANLVQGTARQDPDFPDNAIALFNKSQ 4490
            A FM VP+E QPFD  LW HCRQLALRTYLSKP ANL QG  RQDPDFP+NAIALFNKSQ
Sbjct: 1117 ADFMNVPRETQPFDKRLWAHCRQLALRTYLSKPAANLQQGAQRQDPDFPENAIALFNKSQ 1176

Query: 4489 WVKKLEKVGFKFKAGQTISAFKQSTVLLTTTMALYLRKKREQHQPENVFIMCEKTPADFN 4310
            WVKKLEKVG KFKAGQTISAFKQSTVLLTTTMALYLRKKRE HQP NVFIMCEKTP  FN
Sbjct: 1177 WVKKLEKVGCKFKAGQTISAFKQSTVLLTTTMALYLRKKREGHQPSNVFIMCEKTPEQFN 1236

Query: 4309 DFVTNRWDFSCDSYTSDYEQYDQSQDASFLNFELRKAKHLGVPDSVTDFYRFIKTHARTF 4130
             FV  +WDF+  +YTSDY QYDQSQD++FLNFELRKA+H G+P  V DFY FIKTHA+TF
Sbjct: 1237 SFVLTKWDFTRPNYTSDYTQYDQSQDSAFLNFELRKARHFGLPTEVVDFYAFIKTHAKTF 1296

Query: 4129 IGNLAIMRLSGEGPTFDANTECNIAYDALRFQLTDTVNACYAGDDLVRDKVCEERASWSF 3950
            +GN+A+MRLSGEGPTFDANTECNIAYDALRFQL  TVNACYAGDDLVRDK C+ER  W +
Sbjct: 1297 LGNMAVMRLSGEGPTFDANTECNIAYDALRFQLDPTVNACYAGDDLVRDKACDERPGWKY 1356

Query: 3949 SQHLFELTAKPQSTRKPDFCGWRLTPYGIVKNPTQLYQSLQLALHLNKMEDVKRSYAIDY 3770
            S+ LF L AKP  TRKPDFCGWRLT YGIVK+P QLYQSLQLAL L K+E+VKRSYAIDY
Sbjct: 1357 SEPLFSLKAKPMVTRKPDFCGWRLTKYGIVKSPVQLYQSLQLALRLGKVEEVKRSYAIDY 1416

Query: 3769 THAYRLQDRLFEIFDEKEIAAHHLTTRLLIKHGVRTAHTGDHLPMFHVTSDRLIQDPDAI 3590
              AYRL D+L+EIFDE E+A H L TR LIK G+R   +G+HLP FHVTSDRLI+DP AI
Sbjct: 1417 LFAYRLGDQLYEIFDEDELAKHQLVTRTLIKKGMRPPSSGEHLPTFHVTSDRLIRDPKAI 1476

Query: 3589 RVEDSAGSRSIVSSVQIQEDHFS 3521
            +V      R +V +  +  DHF+
Sbjct: 1477 KVLSFESDRILVPT-DVINDHFA 1498



 Score =  578 bits (1489), Expect = e-169
 Identities = 287/452 (63%), Positives = 339/452 (75%), Gaps = 4/452 (0%)
 Frame = -2

Query: 8647 TRVVKLLEAVTDPSTKAAHSELCFKYAKEAAHNAMRLAPFVVSDTEATTLERMGITTSPF 8468
            T V KLL+ ++DP+ +AA+S+ C   AK AA  AM +AP+ V+ TEA TLER+GITTSPF
Sbjct: 2    TTVQKLLDQISDPNARAAYSQDCLSAAKNAATKAMAIAPYAVTQTEALTLERIGITTSPF 61

Query: 8467 ATTPHTHAGDKIIENDCLSIIGHYLPKEPVTFIQLKKGKLHLLNRAPKQDVLANYCHEPK 8288
            ATT HTHA DKIIENDCL  IG YLPKEPVT IQLK+ KLHLL R P  D+  NYCHEPK
Sbjct: 62   ATTSHTHAADKIIENDCLETIGRYLPKEPVTLIQLKRAKLHLLKRGPNTDIFQNYCHEPK 121

Query: 8287 DVLRYGITNPDYCPRVDTQTAVIADTLHFMSTRQLTQLFLCNPNLCTVFATLVLPIEALH 8108
            DVLR+G+TNP+ CP V+T  AVI+DTLHFMS++Q+  LF  NP L  ++ TLVLPIEAL 
Sbjct: 122  DVLRFGLTNPNTCPTVNTSCAVISDTLHFMSSQQVWTLFKNNPRLQKLYGTLVLPIEALT 181

Query: 8107 KLPSLFPEIYRLEYYKKHFAYMPGGHGGGAYVHSYETLKWLSTGQIGQSYTNPRLGTTDY 7928
            KLPSLFPEIY+LEYY KHFAYMPGGHGGGAYVHSY TLKWLST QIG           ++
Sbjct: 182  KLPSLFPEIYKLEYYDKHFAYMPGGHGGGAYVHSYGTLKWLSTAQIGTE--------RNH 233

Query: 7927 ISIEKIETKAAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHD 7748
            +SIEKIETKAAHHI+LI RR+ ++PWPL PLWVFH SDYVRLP +FYP EANVQ  YPH 
Sbjct: 234  LSIEKIETKAAHHIVLIQRRRQESPWPLPPLWVFHASDYVRLPEIFYPSEANVQKAYPHT 293

Query: 7747 LVKRMQAYCFSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDY 7568
             +KR+Q YCFSVKAVSLRDIFAK+RQVI T EL ++S ADLIRLANYLL ITGM+Q SDY
Sbjct: 294  FIKRLQLYCFSVKAVSLRDIFAKIRQVIPTEELAKFSTADLIRLANYLLFITGMQQTSDY 353

Query: 7567 ECLLTKGWLAKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGIS 7388
            +  L +    KL   +R R+R  F+ L GK+SYAALL+VTDV PV FTT P  R   G  
Sbjct: 354  QSPLMESLFGKLCLSVRARIRSFFQDLMGKSSYAALLTVTDVRPVYFTTKPVRRPISGEP 413

Query: 7387 WLPEPEEINRPP----PDEPGPTLEDLEMMAD 7304
            W  E E   +P        P P+ +DL+++A+
Sbjct: 414  WFEEAETEFKPELPSITGYPTPSPDDLDLLAE 445


>gb|AGG13300.1| Replicase [Garlic virus C]
          Length = 1550

 Score = 1221 bits (3158), Expect = 0.0
 Identities = 632/1055 (59%), Positives = 756/1055 (71%), Gaps = 38/1055 (3%)
 Frame = -2

Query: 6571 GQAAREGLNV--PAQTTTRRGPPTPDHSPPAGEAERSTASPPRHPPTTSYPRQNQESPQT 6398
            GQ  R+G +   P Q  T    P P    P   A+  ++S  R   ++  P  + +  + 
Sbjct: 457  GQRERQGEHAHGPNQNQTTSTQPPPHQPSPHDAAQSGSSSEARKTESSDEPEVSCKDEED 516

Query: 6397 QSDANQEGN---------SAAEPEQDTSF-----------PNLDEAMFEPAREEYTTAGD 6278
             S    +G+           ++ + D +F           P+L+E   EP     T    
Sbjct: 517  LSSGTSDGHVTDWSDSESDCSDDKHDQNFDSLSLFDTADLPDLEEVEEEPDAAHTTQTPT 576

Query: 6277 HDAA-ATRAEHHSSRSNPAAD--DSNIVLSSALEASDRLEPNT-------SHIASAYPHL 6128
             D      A  H+   + A    DS++ +   ++  +  +P+T        +  S    L
Sbjct: 577  PDVTDELSAVQHTQTPHVAESLVDSDVFVGETID-DETQQPDTVPAVQTRENSRSTKVAL 635

Query: 6127 SPHQ---VEILAKHGFTNLKQQFSGTGAIEPIFENPRASN---FSVAPPTSRSQRIVSSM 5966
             P     +EIL  HGFTNLK Q  G   I P+F N  A +   +     T++SQ I  +M
Sbjct: 636  EPFDEETIEILKIHGFTNLKPQHDGEFQIAPVFYNRLAKHIPTYEGITTTTQSQFI--AM 693

Query: 5965 AASIYRQVYSYPIDSKRATAYMSDVKNNLTGLVLPKLSRETLSAWVALCEHSTRDVKLLV 5786
            A ++ R  Y Y +D+KRATA+MSDVKNNLTGLVLPKL R+ L++WVAL E++ R V L+V
Sbjct: 694  AQALKRNCYRYKLDAKRATAFMSDVKNNLTGLVLPKLDRDLLTSWVALAENAKRSVGLIV 753

Query: 5785 IHGAGGAGKSRCLQTMLLDHPALAEDVNIITPTVNLVLDWRKKNPQIDPRRFITFEKACE 5606
            IHGAGGAGKSR LQ +L        +VNI+ PT+NL +DW++K P +DPRR +TFEKACE
Sbjct: 754  IHGAGGAGKSRALQELLRHGKMDINEVNIVVPTINLAVDWKRKLPSMDPRRIMTFEKACE 813

Query: 5605 REGREVVIFDDYGKLPAGYIDAYLAIKPTVEMIILTGDQRQSTHHCTNRDAQTANIQNNV 5426
            REG+ +VI DDYGKLPAGYIDAYLAIK  VE++ILTGDQRQS  H   RD+Q A + +N 
Sbjct: 814  REGKSIVIMDDYGKLPAGYIDAYLAIKFNVELVILTGDQRQSVFHNDKRDSQIALLNSNT 873

Query: 5425 HHFRRYCDYYINATHRQPRRLANPIEVHAEQEAGGAVTHASIIPENCTALVPSHRSQAVL 5246
             H++RYCDYY+NATHRQPRRLANPI+VHAE+E GGAV HA++IP N   LVP+ RSQ++L
Sbjct: 874  DHYKRYCDYYLNATHRQPRRLANPIKVHAEREVGGAVKHATLIPTNAMTLVPAFRSQSLL 933

Query: 5245 ADLGRVAYTYSGCQGLTLNHVTIVLDADTPLCSPEVLYTAFSRAASTITFVNTHSEHPQF 5066
             DLGR A TY+GCQGLTL H++IVLD DTPLCS EVLYTA SRA+ TITF+NTHS + +F
Sbjct: 934  TDLGRQAMTYAGCQGLTLPHLSIVLDKDTPLCSDEVLYTALSRASETITFINTHSNNKEF 993

Query: 5065 LRKLDATPYLKTLISGVREDEDAGKDVSPEEPQAPKPSVKTHLPVENDATFLEPKIEAML 4886
            L KLD+TPYLKTLISGVREDE AG++  P EP       KTH+PV ND+  LE KIEAM 
Sbjct: 994  LDKLDSTPYLKTLISGVREDEQAGREQPPPEPSVRDSPTKTHIPVANDSVQLEGKIEAME 1053

Query: 4885 DKDVRELWDGREKTNLMQTQDPVVQLFPHQQAKDEALFRITIDKRIKTATVDENTKAIVG 4706
            DKD RELW G EKTNLMQTQDPVVQLFPHQQAKDEALF+ITI++RI+ AT + N KA+  
Sbjct: 1054 DKDTRELWSGEEKTNLMQTQDPVVQLFPHQQAKDEALFKITINERIRLATPETNRKALTD 1113

Query: 4705 RLHAGDLLFEAYAKFMRVPKEPQPFDPELWRHCRQLALRTYLSKPKANLVQGTARQDPDF 4526
             L+AGDLLFEAYA FM VPKE Q FD  LW HCRQLALRTYLSKP ANL QG  RQDPDF
Sbjct: 1114 TLNAGDLLFEAYASFMNVPKETQAFDKRLWAHCRQLALRTYLSKPTANLQQGAKRQDPDF 1173

Query: 4525 PDNAIALFNKSQWVKKLEKVGFKFKAGQTISAFKQSTVLLTTTMALYLRKKREQHQPENV 4346
            P+NAIALFNKSQWVKKLEKVG +FKAGQTISAFKQSTVLLTTTMALYLRKKRE HQP+NV
Sbjct: 1174 PENAIALFNKSQWVKKLEKVGCRFKAGQTISAFKQSTVLLTTTMALYLRKKREGHQPDNV 1233

Query: 4345 FIMCEKTPADFNDFVTNRWDFSCDSYTSDYEQYDQSQDASFLNFELRKAKHLGVPDSVTD 4166
            FIMCEKTP  FN FV  +WDF+  +YTSDY QYDQSQDA+FLNFELRKA+H GVP+ V D
Sbjct: 1234 FIMCEKTPEQFNSFVLTKWDFTRPNYTSDYTQYDQSQDAAFLNFELRKARHFGVPEEVVD 1293

Query: 4165 FYRFIKTHARTFIGNLAIMRLSGEGPTFDANTECNIAYDALRFQLTDTVNACYAGDDLVR 3986
            FY FIKTHA+TF+GNLA+MRLSGEGPTFDANTECNIAYDALRFQL  TV ACYAGDDLVR
Sbjct: 1294 FYAFIKTHAKTFLGNLAVMRLSGEGPTFDANTECNIAYDALRFQLDSTVKACYAGDDLVR 1353

Query: 3985 DKVCEERASWSFSQHLFELTAKPQSTRKPDFCGWRLTPYGIVKNPTQLYQSLQLALHLNK 3806
            DK C+ER  W +S+ LF L AKP  T KPDFCGWRLT YGIVK+P QLYQSLQLAL L K
Sbjct: 1354 DKACDERPGWKYSEPLFSLKAKPLVTNKPDFCGWRLTKYGIVKSPVQLYQSLQLALRLGK 1413

Query: 3805 MEDVKRSYAIDYTHAYRLQDRLFEIFDEKEIAAHHLTTRLLIKHGVRTAHTGDHLPMFHV 3626
            +E+VKRSYAIDY  AYRL D+L++IFDE E++ H L TR LIK G++   +G+HLP FHV
Sbjct: 1414 VEEVKRSYAIDYLFAYRLGDQLYDIFDEDELSKHQLVTRTLIKKGMQPPSSGEHLPTFHV 1473

Query: 3625 TSDRLIQDPDAIRVEDSAGSRSIVSSVQIQEDHFS 3521
            TSDRLI+DP AI+V      R I+  + I +DHFS
Sbjct: 1474 TSDRLIRDPRAIKVSTFESDR-IILPLDILDDHFS 1507



 Score =  576 bits (1485), Expect = e-168
 Identities = 287/460 (62%), Positives = 342/460 (74%), Gaps = 5/460 (1%)
 Frame = -2

Query: 8647 TRVVKLLEAVTDPSTKAAHSELCFKYAKEAAHNAMRLAPFVVSDTEATTLERMGITTSPF 8468
            T V KLL+ ++DP+ +AA+S+ C   AK AA  AM +AP+ V+ TEA TLER+GITTSPF
Sbjct: 2    TTVQKLLDQISDPNARAAYSQECLSAAKNAATKAMTIAPYAVTQTEALTLERIGITTSPF 61

Query: 8467 ATTPHTHAGDKIIENDCLSIIGHYLPKEPVTFIQLKKGKLHLLNRAPKQDVLANYCHEPK 8288
            ATT HTHA DKIIENDCL II HYLPK+P+T IQLK+ KLHLL R P  D   NYCHEPK
Sbjct: 62   ATTSHTHAADKIIENDCLEIISHYLPKDPITLIQLKRSKLHLLKRGPTDDTFQNYCHEPK 121

Query: 8287 DVLRYGITNPDYCPRVDTQTAVIADTLHFMSTRQLTQLFLCNPNLCTVFATLVLPIEALH 8108
            DVLR+G+TNP  CP V T  AVI+DTLHFMS++QL  LF  NP L  ++ TLVLP+EALH
Sbjct: 122  DVLRFGLTNPHTCPTVTTSCAVISDTLHFMSSQQLWTLFARNPALQRLYGTLVLPVEALH 181

Query: 8107 KLPSLFPEIYRLEYYKKHFAYMPGGHGGGAYVHSYETLKWLSTGQIGQSYTNPRLGTTDY 7928
            KLPSLFPEIY+LEYY KHFAYMPGGHGGGAY+HSY TLKWLST QIG           ++
Sbjct: 182  KLPSLFPEIYKLEYYDKHFAYMPGGHGGGAYIHSYGTLKWLSTAQIGSG--------LNH 233

Query: 7927 ISIEKIETKAAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHD 7748
            +SIEKIETKAAHHIM+I RR+ + PWPL P+WV+H SDYV+LP +FYP EANVQ  YPH 
Sbjct: 234  LSIEKIETKAAHHIMVIQRRRPELPWPLPPVWVYHASDYVKLPEIFYPTEANVQRPYPHV 293

Query: 7747 LVKRMQAYCFSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDY 7568
             +KR+Q YCFSVKAVSLRDIFAK+RQV+ T EL R+S ADLIRLANYLL ITGM+Q SDY
Sbjct: 294  FIKRLQLYCFSVKAVSLRDIFAKIRQVLPTEELARFSTADLIRLANYLLFITGMQQTSDY 353

Query: 7567 ECLLTKGWLAKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGIS 7388
            +  L +    KL   IR R+R+ F++L GK+SYAALL+VTDV PV FTT P  R   G  
Sbjct: 354  QSPLMESLFGKLCLSIRARIREFFQNLMGKSSYAALLTVTDVRPVYFTTKPLRRPICGEQ 413

Query: 7387 WLPEPEEINRPP--PDEPG---PTLEDLEMMADLHNAQRL 7283
            W  E EE +  P  P   G   P+ +DL+++A+      L
Sbjct: 414  WF-EAEEADEDPSVPSPTGYQRPSPDDLDLLAEFEQQNLL 452


>gb|AHB33487.1| replicase [Garlic virus A]
          Length = 1612

 Score = 1219 bits (3155), Expect = 0.0
 Identities = 648/1146 (56%), Positives = 786/1146 (68%), Gaps = 36/1146 (3%)
 Frame = -2

Query: 6811 PMQPAPAAPPTDGASCSYDSNAGPKPPDTPPASPQRGVTSNP--------HSAPKTRGPD 6656
            P+Q +  +P        +       PP   P + +   T+ P        H+ PK +   
Sbjct: 442  PVQQSGPSPDDLDLLAWFHELENGSPPSQQPGTDKTTATNVPVEPELAETHTVPKAQTTS 501

Query: 6655 DSALAFTFGSITPSMFQPDRAQPKPILSGQAAREGLNVPAQTTTRRGPPTPDHSPPAGEA 6476
            +   +++   + P+ F    A  +P+       E ++  A    +   P  +        
Sbjct: 502  ELLTSYSAHDL-PTDFNGKIATSEPLAPMGNKPEVVDQTANPIDQVIAPQRNEETDELRH 560

Query: 6475 ERSTASPPR---HPPTTSYPRQNQESPQTQSDANQEGNSAAEPEQDTSFPNLDEAM-FEP 6308
            E  T  PP           PR   E+  T    +   +S +E +   S P+L+EA   +P
Sbjct: 561  EE-TDKPPMATLDDNRAQAPRVQTETSNTACADDSSDDSLSECDDCDSLPSLEEASNLDP 619

Query: 6307 AR-EEYTTAGDHDAAA---------TRAEHHSSRSNP---AADDSNIVLSSALEASDRLE 6167
               E++    D D+           T   H +++ +P   A  D    L  A +  D+ E
Sbjct: 620  LDLEDFAPDIDIDSGTSPEQNADVETPGTHETAQFSPNSNAHQDGAATLEDAHQNIDKGE 679

Query: 6166 PNTS-----HIASAYPHLSPHQ---VEILAKHGFTNLKQQFSGTGAIEPIFENPRAS--- 6020
                     H  +A P L P     ++IL  HGFT L+ Q  GT  I+P++ N +     
Sbjct: 680  TTAQTEENDHKQAARPKLEPLDQATIDILKLHGFTALQPQHDGTDQIQPVYFNEKIKCHR 739

Query: 6019 NFSVAPPTSRSQRIVSSMAASIYRQVYSYPIDSKRATAYMSDVKNNLTGLVLPKLSRETL 5840
                    S +   ++ +AAS++R VY+Y I++KRATAYMSDVKNNLTGLVLPKL R+ L
Sbjct: 740  RLETKDLCSTASPFIT-LAASLHRGVYNYRINNKRATAYMSDVKNNLTGLVLPKLDRDLL 798

Query: 5839 SAWVALCEHSTRDVKLLVIHGAGGAGKSRCLQTMLLDHPALAEDVNIITPTVNLVLDWRK 5660
            S+WVAL E +TRDV LLVIHGAGGAGKSR LQ +L + PAL E VNI+ PT+NL  DW+K
Sbjct: 799  SSWVALAERTTRDVGLLVIHGAGGAGKSRALQELLRNSPALLEAVNIVVPTINLANDWKK 858

Query: 5659 KNPQIDPRRFITFEKACEREGREVVIFDDYGKLPAGYIDAYLAIKPTVEMIILTGDQRQS 5480
            K P +DPRR +TFEKACERE + V IFDDYGKLPAG++DAYLAIK  VE+ ILTGDQRQS
Sbjct: 859  KLPSMDPRRVMTFEKACERECKAVTIFDDYGKLPAGFVDAYLAIKVNVELAILTGDQRQS 918

Query: 5479 THHCTNRDAQTANIQNNVHHFRRYCDYYINATHRQPRRLANPIEVHAEQEAGGAVTHASI 5300
            THH  +R++Q A + +NV HF  Y DYYINATHRQPRRLANPI+VHAE+  GGAV  + +
Sbjct: 919  THH-QDRESQIALLSSNVAHFAPYTDYYINATHRQPRRLANPIKVHAERLLGGAVRRSDL 977

Query: 5299 IPENCTALVPSHRSQAVLADLGRVAYTYSGCQGLTLNHVTIVLDADTPLCSPEVLYTAFS 5120
            +P+    LVP+ RSQ++L DLGR A TY+GCQGLTLNH+TIVLD DTPLCS EVLYTAFS
Sbjct: 978  VPDRAMVLVPAFRSQSLLTDLGRQAMTYAGCQGLTLNHLTIVLDKDTPLCSEEVLYTAFS 1037

Query: 5119 RAASTITFVNTHSEHPQFLRKLDATPYLKTLISGVREDEDAGKDVSPEEPQAPKPSVKTH 4940
            RA+ +ITFVNTHS++P+FL KLD TPYLKTLIS VREDE AG    P EP       KTH
Sbjct: 1038 RASESITFVNTHSDNPEFLAKLDTTPYLKTLISWVREDEQAGASEPPPEPNVRDEPTKTH 1097

Query: 4939 LPVENDATFLEPKIEAMLDKDVRELWDGREKTNLMQTQDPVVQLFPHQQAKDEALFRITI 4760
            +PV ND   L+ K+E M DKD RELW G EKTNLMQTQDPVVQLFPHQQAKDEALF+ITI
Sbjct: 1098 IPVTNDRVQLDDKVETMEDKDTRELWSGEEKTNLMQTQDPVVQLFPHQQAKDEALFKITI 1157

Query: 4759 DKRIKTATVDENTKAIVGRLHAGDLLFEAYAKFMRVPKEPQPFDPELWRHCRQLALRTYL 4580
            ++RI+TA  ++N K++   L+AGDLLFEAYA+FM+VP EPQ FD  LW HCRQLALRTYL
Sbjct: 1158 NERIRTANPEKNAKSLQQTLNAGDLLFEAYAQFMKVPAEPQAFDKRLWTHCRQLALRTYL 1217

Query: 4579 SKPKANLVQGTARQDPDFPDNAIALFNKSQWVKKLEKVGFKFKAGQTISAFKQSTVLLTT 4400
            SKP ANL QG +RQDPDFPDNAIALFNKSQWVKKLEKVG KFKAGQTISAFKQ  VLLTT
Sbjct: 1218 SKPAANLQQGASRQDPDFPDNAIALFNKSQWVKKLEKVGAKFKAGQTISAFKQQVVLLTT 1277

Query: 4399 TMALYLRKKREQHQPENVFIMCEKTPADFNDFVTNRWDFSCDSYTSDYEQYDQSQDASFL 4220
            TMALYLRKKREQHQP+N+FIMCEKTP  FN+FV  +WDF   +YTSDY QYDQSQDASFL
Sbjct: 1278 TMALYLRKKREQHQPDNIFIMCEKTPEQFNNFVLTKWDFKRPNYTSDYTQYDQSQDASFL 1337

Query: 4219 NFELRKAKHLGVPDSVTDFYRFIKTHARTFIGNLAIMRLSGEGPTFDANTECNIAYDALR 4040
            NFELRKA+HLGVP+ V  FYRFIKTHA+TF+GNLAIMRLSGEGPTFDANTECNIAYDALR
Sbjct: 1338 NFELRKARHLGVPEEVLSFYRFIKTHAKTFVGNLAIMRLSGEGPTFDANTECNIAYDALR 1397

Query: 4039 FQLTDTVNACYAGDDLVRDKVCEERASWSFSQHLFELTAKPQSTRKPDFCGWRLTPYGIV 3860
            F+L D V ACYAGDDLVRD+ CEERA W +S+ LF L AKP  T KPDFCGWRLTPYGIV
Sbjct: 1398 FRLDDNVCACYAGDDLVRDRACEERAGWVYSEQLFSLKAKPLVTNKPDFCGWRLTPYGIV 1457

Query: 3859 KNPTQLYQSLQLALHLNKMEDVKRSYAIDYTHAYRLQDRLFEIFDEKEIAAHHLTTRLLI 3680
            K+P QLYQSLQLAL L K+EDVKRSYAIDY  AYRL D+L++IFDE+E+  H L TR LI
Sbjct: 1458 KSPIQLYQSLQLALRLGKVEDVKRSYAIDYLFAYRLGDKLYDIFDEEELEKHQLVTRTLI 1517

Query: 3679 KHGVRTAHTGDHLPMFHVTSDRLIQDPDAIRVEDSAGSRSIVSSVQIQEDHFSPERPTCT 3500
            K G++   +G+HLP FH+TSDRLI+DP +I +      R ++    I +D+         
Sbjct: 1518 KKGMQPPESGNHLPTFHITSDRLIRDPRSITIRSYESDRILLHQPVIIDDYIPASLTNNN 1577

Query: 3499 TQFSTS 3482
             Q +TS
Sbjct: 1578 FQTATS 1583



 Score =  595 bits (1535), Expect = e-174
 Identities = 301/462 (65%), Positives = 350/462 (75%), Gaps = 9/462 (1%)
 Frame = -2

Query: 8647 TRVVKLLEAVTDPSTKAAHSELCFKYAKEAAHNAMRLAPFVVSDTEATTLERMGITTSPF 8468
            T V KL + ++DP+TKA +S  CF+ A+ A+  A+  APF V+  EA  LER+GITTSPF
Sbjct: 2    TAVQKLFDQISDPNTKAGYSNACFEAAQNASKKALATAPFSVTTPEALVLERIGITTSPF 61

Query: 8467 ATTPHTHAGDKIIENDCLSIIGHYLPK-EPVTFIQLKKGKLHLLNRAPKQDVLANYCHEP 8291
            ATT HTHA DKIIENDCLSIIGHYLPK E VT IQLK+GKLHLL R P  D   NYC+EP
Sbjct: 62   ATTSHTHAADKIIENDCLSIIGHYLPKKEAVTLIQLKRGKLHLLGRTPNLDKFQNYCYEP 121

Query: 8290 KDVLRYGITNPDYCPRVDTQTAVIADTLHFMSTRQLTQLFLCNPNLCTVFATLVLPIEAL 8111
            KDVLRYG+TNP+ CP+VDT+ AV+ADTLHFMS +QL  LF  NP L  +FATLVLPIEAL
Sbjct: 122  KDVLRYGLTNPNSCPKVDTEYAVLADTLHFMSPKQLYTLFSKNPKLERLFATLVLPIEAL 181

Query: 8110 HKLPSLFPEIYRLEYYKKHFAYMPGGHGGGAYVHSYETLKWLSTGQIG-----QSYTNPR 7946
            +KLPSLFP++Y+LEYYK HF+YMPGGHGGGAYVHSY TL+WL T Q+G     +S     
Sbjct: 182  NKLPSLFPDVYKLEYYKDHFSYMPGGHGGGAYVHSYSTLRWLDTAQVGPVNYDKSCITDP 241

Query: 7945 LGTTDYISIEKIETKAAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQ 7766
               TDY+SIEKIETKAAHHIMLI RR+ Q  WPL  LWVFH SDYV+LPP+FYPPEANVQ
Sbjct: 242  WPITDYLSIEKIETKAAHHIMLIQRRRVQVDWPLPTLWVFHASDYVKLPPIFYPPEANVQ 301

Query: 7765 NTYPHDLVKRMQAYCFSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGM 7586
             TYPH  +KRMQ YCFSVKAVSLRDIFAKLRQVIET EL RYSMADLIRLANYLL ITGM
Sbjct: 302  KTYPHVFIKRMQLYCFSVKAVSLRDIFAKLRQVIETQELIRYSMADLIRLANYLLFITGM 361

Query: 7585 EQVSDYECLLTKGWLAKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVR 7406
             Q+SDYE  L +    KL   IR R+R  F++L GKTSYAALL+VTDVIPV FTT P  R
Sbjct: 362  NQLSDYESPLLENLFGKLCASIRMRLRTFFQNLLGKTSYAALLTVTDVIPVHFTTTPRRR 421

Query: 7405 GCDGISWLPEPEEINR---PPPDEPGPTLEDLEMMADLHNAQ 7289
               G SW    ++  +    P  + GP+ +DL+++A  H  +
Sbjct: 422  EAIGESWFRPADDKPKQQDDPVQQSGPSPDDLDLLAWFHELE 463


>ref|NP_569132.1| replicase [Garlic virus C]
 dbj|BAA61818.1| replicase [Garlic virus C]
          Length = 1550

 Score = 1219 bits (3154), Expect = 0.0
 Identities = 630/1059 (59%), Positives = 751/1059 (70%), Gaps = 37/1059 (3%)
 Frame = -2

Query: 6571 GQAAREGLNV--PAQTTTRRGPPTPDHSPPAGEAERSTASPPRHPPTTSYPRQNQESPQT 6398
            GQ  R+G +   P Q  T    P P    P   A+  ++S  R   ++  P  + +  + 
Sbjct: 457  GQRERQGEHAHGPNQNQTTSTQPPPHQPSPHDAAQSGSSSEARKTESSDEPEVSCKDEED 516

Query: 6397 QSDANQEGNSA--AEPEQDTS------------------FPNLDEAMFEPAREEYTTAGD 6278
                  +G+    ++ E D S                   P+L+E   EP     T    
Sbjct: 517  LGSGTSDGHVTDWSDSESDCSDDKHDQIFDSLSLFDTADLPDLEEVEEEPDAAHTTQTPT 576

Query: 6277 HDAA-ATRAEHHSSRSNPAAD--DSNIVLSSALEASDR---------LEPNTSHIASAYP 6134
             D    + A  H+   + A    DS++ +   ++   +            N+     A  
Sbjct: 577  PDVTDESSAVQHTQTPHIAESLVDSDVFVGETIDDETQQPDTVPAVQTRENSRSTTVALE 636

Query: 6133 HLSPHQVEILAKHGFTNLKQQFSGTGAIEPIFENPRASN---FSVAPPTSRSQRIVSSMA 5963
                  +EIL  HGFTNLK Q  G   I P+F N  A +   +     T++SQ I  +MA
Sbjct: 637  PFDEETIEILKIHGFTNLKPQHDGEFQIAPVFYNRLAKHIPTYEGITTTTQSQFI--AMA 694

Query: 5962 ASIYRQVYSYPIDSKRATAYMSDVKNNLTGLVLPKLSRETLSAWVALCEHSTRDVKLLVI 5783
             ++ R  Y Y +D+KRATA+MSDVKNNLTGLVLPKL R+ L++WVAL E++ R V L+VI
Sbjct: 695  QALKRNCYRYKLDAKRATAFMSDVKNNLTGLVLPKLDRDLLTSWVALAENAKRSVGLIVI 754

Query: 5782 HGAGGAGKSRCLQTMLLDHPALAEDVNIITPTVNLVLDWRKKNPQIDPRRFITFEKACER 5603
            HGAGGAGKSR LQ +L        +VNI+ PT+NL +DW++K P +DPRR +TFEKACER
Sbjct: 755  HGAGGAGKSRALQELLRHGKMDINEVNIVVPTINLAVDWKRKLPSMDPRRIMTFEKACER 814

Query: 5602 EGREVVIFDDYGKLPAGYIDAYLAIKPTVEMIILTGDQRQSTHHCTNRDAQTANIQNNVH 5423
            EG+ +VI DDYGKLPAGYIDAYLAIK  VE++ILTGDQRQS  H   RD+Q A + +N  
Sbjct: 815  EGKSIVIMDDYGKLPAGYIDAYLAIKFNVELVILTGDQRQSVFHNDKRDSQIALLNSNTD 874

Query: 5422 HFRRYCDYYINATHRQPRRLANPIEVHAEQEAGGAVTHASIIPENCTALVPSHRSQAVLA 5243
            H++RYCDYY+NATHRQPRRLANPI+VHAE+E GGAV HA++IP N   LVP+ RSQ++L 
Sbjct: 875  HYKRYCDYYLNATHRQPRRLANPIKVHAEREVGGAVKHATLIPTNAMTLVPAFRSQSLLT 934

Query: 5242 DLGRVAYTYSGCQGLTLNHVTIVLDADTPLCSPEVLYTAFSRAASTITFVNTHSEHPQFL 5063
            DLGR A TY+GCQGLTL H++IVLD DTPLCS EVLYTA SRA+ TITF+NTHS + +FL
Sbjct: 935  DLGRQAMTYAGCQGLTLPHLSIVLDKDTPLCSDEVLYTALSRASETITFINTHSNNKEFL 994

Query: 5062 RKLDATPYLKTLISGVREDEDAGKDVSPEEPQAPKPSVKTHLPVENDATFLEPKIEAMLD 4883
             KLD+TPYLKTLISGVREDE AG++  P EP       KTH+PV ND+  LE KIEAM D
Sbjct: 995  DKLDSTPYLKTLISGVREDEQAGREQPPPEPSVRDSPTKTHIPVANDSVQLEGKIEAMED 1054

Query: 4882 KDVRELWDGREKTNLMQTQDPVVQLFPHQQAKDEALFRITIDKRIKTATVDENTKAIVGR 4703
            KD RELW G EKTNLMQTQDPVVQLFPHQQAKDEALF+ITI++RI+ AT + N KA+   
Sbjct: 1055 KDTRELWSGEEKTNLMQTQDPVVQLFPHQQAKDEALFKITINERIRLATPETNRKALTDT 1114

Query: 4702 LHAGDLLFEAYAKFMRVPKEPQPFDPELWRHCRQLALRTYLSKPKANLVQGTARQDPDFP 4523
            L+AGDLLFEAYA FM VPKE Q FD  LW HCRQLALRTYLSKP ANL QG  RQDPDFP
Sbjct: 1115 LNAGDLLFEAYASFMNVPKETQAFDKRLWAHCRQLALRTYLSKPTANLQQGAKRQDPDFP 1174

Query: 4522 DNAIALFNKSQWVKKLEKVGFKFKAGQTISAFKQSTVLLTTTMALYLRKKREQHQPENVF 4343
            +NAIALFNKSQWVKKLEKVG +FKAGQTISAFKQSTVLLTTTMALYLRKKRE HQP+NVF
Sbjct: 1175 ENAIALFNKSQWVKKLEKVGCRFKAGQTISAFKQSTVLLTTTMALYLRKKREGHQPDNVF 1234

Query: 4342 IMCEKTPADFNDFVTNRWDFSCDSYTSDYEQYDQSQDASFLNFELRKAKHLGVPDSVTDF 4163
            IMCEKTP  FN FV  +WDF+  +YTSDY QYDQSQDA+FLNFELRKA+H GVP+ V DF
Sbjct: 1235 IMCEKTPEQFNSFVLTKWDFTRPNYTSDYTQYDQSQDAAFLNFELRKARHFGVPEEVVDF 1294

Query: 4162 YRFIKTHARTFIGNLAIMRLSGEGPTFDANTECNIAYDALRFQLTDTVNACYAGDDLVRD 3983
            Y FIKTHA+TF+GNLA+MRLSGEGPTFDANTECNIAYDALRFQL  TV ACYAGDDLVRD
Sbjct: 1295 YAFIKTHAKTFLGNLAVMRLSGEGPTFDANTECNIAYDALRFQLDSTVKACYAGDDLVRD 1354

Query: 3982 KVCEERASWSFSQHLFELTAKPQSTRKPDFCGWRLTPYGIVKNPTQLYQSLQLALHLNKM 3803
            K C+ER  W +S+ LF L AKP  T KPDFCGWRLT YGIVK+P QLYQSLQLAL L K+
Sbjct: 1355 KACDERPGWKYSEPLFSLKAKPLVTNKPDFCGWRLTKYGIVKSPVQLYQSLQLALRLGKV 1414

Query: 3802 EDVKRSYAIDYTHAYRLQDRLFEIFDEKEIAAHHLTTRLLIKHGVRTAHTGDHLPMFHVT 3623
            E+VKRSYAIDY  AYRL D+L++IFDE E++ H L TR LIK G++   +G+HLP FHVT
Sbjct: 1415 EEVKRSYAIDYLFAYRLGDQLYDIFDEDELSKHQLVTRTLIKKGMQPPSSGEHLPTFHVT 1474

Query: 3622 SDRLIQDPDAIRVEDSAGSRSIVSSVQIQEDHFSPERPT 3506
            SDRLI+DP AI+V      R I+  + I +DHFS    T
Sbjct: 1475 SDRLIRDPRAIKVSTFESDR-IILPLDIIDDHFSKSGKT 1512



 Score =  576 bits (1484), Expect = e-168
 Identities = 287/460 (62%), Positives = 341/460 (74%), Gaps = 5/460 (1%)
 Frame = -2

Query: 8647 TRVVKLLEAVTDPSTKAAHSELCFKYAKEAAHNAMRLAPFVVSDTEATTLERMGITTSPF 8468
            T V KLL+ ++DP+ +AA+S+ C   AK AA  AM +AP+ V+ TEA TLER+GITTSPF
Sbjct: 2    TTVQKLLDQISDPNARAAYSQECLSAAKNAATKAMTIAPYAVTQTEALTLERIGITTSPF 61

Query: 8467 ATTPHTHAGDKIIENDCLSIIGHYLPKEPVTFIQLKKGKLHLLNRAPKQDVLANYCHEPK 8288
            ATT HTHA DKIIENDCL II HYLPK+P+T IQLK+ KLHLL R P  D   NYCHEPK
Sbjct: 62   ATTSHTHAADKIIENDCLEIISHYLPKDPITLIQLKRSKLHLLKRGPTDDAFQNYCHEPK 121

Query: 8287 DVLRYGITNPDYCPRVDTQTAVIADTLHFMSTRQLTQLFLCNPNLCTVFATLVLPIEALH 8108
            DVLR+G+TNP  CP V T  AVI+DTLHFMS++QL  LF  NP L  ++ TLVLP+EALH
Sbjct: 122  DVLRFGLTNPHTCPTVTTSCAVISDTLHFMSSQQLWTLFARNPALQRLYGTLVLPVEALH 181

Query: 8107 KLPSLFPEIYRLEYYKKHFAYMPGGHGGGAYVHSYETLKWLSTGQIGQSYTNPRLGTTDY 7928
            KLPSLFPEIY+LEYY KHFAYMPGGHGGGAY+HSY TLKWLST QIG           ++
Sbjct: 182  KLPSLFPEIYKLEYYDKHFAYMPGGHGGGAYIHSYGTLKWLSTAQIGSG--------LNH 233

Query: 7927 ISIEKIETKAAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHD 7748
            +SIEKIETKAAHHIM+I RR+ + PWPL P+WV+H SDYV+LP +FYP EANVQ  YPH 
Sbjct: 234  LSIEKIETKAAHHIMVIQRRRPELPWPLPPVWVYHASDYVKLPEIFYPTEANVQRPYPHV 293

Query: 7747 LVKRMQAYCFSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDY 7568
             +KR+Q YCFSVKAVSLRDIFAK+RQV+ T EL R+S ADLIRLANYLL ITGM+Q SDY
Sbjct: 294  FIKRLQLYCFSVKAVSLRDIFAKIRQVLPTEELARFSTADLIRLANYLLFITGMQQTSDY 353

Query: 7567 ECLLTKGWLAKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGIS 7388
            +  L +    KL   IR R+R+ F++L GK+SYAALL+VTDV PV FTT P  R   G  
Sbjct: 354  QSPLMESLFGKLCLSIRARIREFFQNLMGKSSYAALLTVTDVHPVYFTTKPLRRPICGEQ 413

Query: 7387 WLPEPEEINRPP--PDEPG---PTLEDLEMMADLHNAQRL 7283
            W  E EE    P  P   G   P+ +DL+++A+      L
Sbjct: 414  WF-EAEEAEEDPSVPSPTGYQRPSPDDLDLLAEFEQQNLL 452


>gb|AVK94126.1| replicase [Garlic virus D]
 gb|AVK94131.1| replicase [Garlic virus D]
          Length = 1562

 Score = 1214 bits (3140), Expect = 0.0
 Identities = 621/1025 (60%), Positives = 729/1025 (71%), Gaps = 13/1025 (1%)
 Frame = -2

Query: 6556 EGLNVPAQTTTRRGPPTP---DHSPPAGEAERSTASPPRH------PPTTSYPRQNQESP 6404
            +G+N  A    + G  T    D S P        A P         PP         +SP
Sbjct: 514  DGVNNAANNPNQEGYVTDWSDDESLPEERGFGQEAQPSDDEDLFDLPPLEDCGETGDDSP 573

Query: 6403 QTQSDANQEGNSAAEPEQDTSFPNLDEAMFEPA---REEYTTAGDHDAAATRAEHHSSRS 6233
            Q    AN       E +++ +   ++    EP    R+   T  D+    +R EH+S R 
Sbjct: 574  QESPCANDHDLPETEAKEEDTEAKVEPDEIEPQEPHRDSENTYVDN-CDGSRTEHNSERE 632

Query: 6232 NPAADDSNIVLSSALEASDRLEPNTSHIASAYPHLSPHQVEILAKHGFTNLKQQFSGTGA 6053
                                 EP+          L    +E+L  HGFTN + Q+ G   
Sbjct: 633  T--------------------EPHKPATKVILRPLDDDTIELLKMHGFTNYRAQYDGEDQ 672

Query: 6052 IEPIFENPRASNFSVAPPTSRS-QRIVSSMAASIYRQVYSYPIDSKRATAYMSDVKNNLT 5876
            I+PIF NP     +         Q+    MA  + RQ Y Y I++KRATA+MSDVKNNLT
Sbjct: 673  IQPIFRNPNTKFLTQHTTVGAGPQQCFIDMAHGLRRQCYEYRINAKRATAFMSDVKNNLT 732

Query: 5875 GLVLPKLSRETLSAWVALCEHSTRDVKLLVIHGAGGAGKSRCLQTMLLDHPALAEDVNII 5696
            GLVLPKL R+ LS+WV+L EH+TR V L+VIHGAGGAGKSR LQ +L        +VNI+
Sbjct: 733  GLVLPKLERDLLSSWVSLAEHATRKVGLIVIHGAGGAGKSRALQELLRSQAVDTNEVNIV 792

Query: 5695 TPTVNLVLDWRKKNPQIDPRRFITFEKACEREGREVVIFDDYGKLPAGYIDAYLAIKPTV 5516
             PT+NL  DW+KK P +DPRR +TFEKACEREG+ VVI DDYGKLPAGY+DAYLAIK  V
Sbjct: 793  VPTINLAADWKKKIPAVDPRRVMTFEKACEREGKPVVIMDDYGKLPAGYVDAYLAIKSNV 852

Query: 5515 EMIILTGDQRQSTHHCTNRDAQTANIQNNVHHFRRYCDYYINATHRQPRRLANPIEVHAE 5336
            E+++LTGDQRQS +H   RD+Q A + +N  HF++YCDYY+NATHRQPRRLANPI+VHAE
Sbjct: 853  ELVVLTGDQRQSVYHNDKRDSQIALLCSNTDHFKKYCDYYVNATHRQPRRLANPIKVHAE 912

Query: 5335 QEAGGAVTHASIIPENCTALVPSHRSQAVLADLGRVAYTYSGCQGLTLNHVTIVLDADTP 5156
            +E GGAV HA++IPE    LVP+ RSQ++L DLGR A TY+GCQGLTL H+TIVLD DTP
Sbjct: 913  REVGGAVKHATLIPETAMTLVPAFRSQSLLTDLGRQAMTYAGCQGLTLPHLTIVLDKDTP 972

Query: 5155 LCSPEVLYTAFSRAASTITFVNTHSEHPQFLRKLDATPYLKTLISGVREDEDAGKDVSPE 4976
            LCS +V+YTA SRA+ TITFVNTHS++ +F  KLD+TPYLKTLISGVREDE  G D  P 
Sbjct: 973  LCSDQVMYTALSRASETITFVNTHSDNREFQAKLDSTPYLKTLISGVREDELTGGDYKPP 1032

Query: 4975 EPQAPKPSVKTHLPVENDATFLEPKIEAMLDKDVRELWDGREKTNLMQTQDPVVQLFPHQ 4796
            EP   +   KTH+PV ND   LE KIEAM DKD RELW G EKTNLMQTQDP+VQLFPHQ
Sbjct: 1033 EPIVREGPTKTHMPVANDKIQLEEKIEAMEDKDTRELWSGEEKTNLMQTQDPIVQLFPHQ 1092

Query: 4795 QAKDEALFRITIDKRIKTATVDENTKAIVGRLHAGDLLFEAYAKFMRVPKEPQPFDPELW 4616
            QAKDEALF+ITI +R++TA  D N KA+   L+AGDLLFEAYAKFM VP+E Q FD  LW
Sbjct: 1093 QAKDEALFKITIKERVRTADADSNRKAMHETLNAGDLLFEAYAKFMNVPQETQAFDKRLW 1152

Query: 4615 RHCRQLALRTYLSKPKANLVQGTARQDPDFPDNAIALFNKSQWVKKLEKVGFKFKAGQTI 4436
             HCRQLALRTYLSKP +NL QG  RQDPDFPDNAIALFNKSQWVKKLEKVG KFKAGQTI
Sbjct: 1153 AHCRQLALRTYLSKPTSNLQQGAQRQDPDFPDNAIALFNKSQWVKKLEKVGCKFKAGQTI 1212

Query: 4435 SAFKQSTVLLTTTMALYLRKKREQHQPENVFIMCEKTPADFNDFVTNRWDFSCDSYTSDY 4256
            SAFKQSTVLLTTTMALYLRKKRE HQP NVF+MCEKTP  FN FV  RW+F   +YTSDY
Sbjct: 1213 SAFKQSTVLLTTTMALYLRKKREGHQPANVFVMCEKTPEQFNSFVLTRWNFKRPNYTSDY 1272

Query: 4255 EQYDQSQDASFLNFELRKAKHLGVPDSVTDFYRFIKTHARTFIGNLAIMRLSGEGPTFDA 4076
             QYDQSQDA+FLNFELRKA+H G+P  + DFY FIKTHA+TF+GNLAIMRLSGEGPTFDA
Sbjct: 1273 TQYDQSQDAAFLNFELRKARHFGIPPEIVDFYAFIKTHAKTFLGNLAIMRLSGEGPTFDA 1332

Query: 4075 NTECNIAYDALRFQLTDTVNACYAGDDLVRDKVCEERASWSFSQHLFELTAKPQSTRKPD 3896
            NTECNIAYDALRFQ+  TVNACYAGDDLVRDK CEER  W +++ LF L AKP  T KPD
Sbjct: 1333 NTECNIAYDALRFQVDPTVNACYAGDDLVRDKACEERPGWKYAEPLFSLKAKPLVTNKPD 1392

Query: 3895 FCGWRLTPYGIVKNPTQLYQSLQLALHLNKMEDVKRSYAIDYTHAYRLQDRLFEIFDEKE 3716
            FCGWRLT YGIVK+P QLYQSLQLAL L K+E+VKRSYAIDY  AYRL D+L+++FDE E
Sbjct: 1393 FCGWRLTKYGIVKSPVQLYQSLQLALRLGKVEEVKRSYAIDYLFAYRLGDQLYDVFDENE 1452

Query: 3715 IAAHHLTTRLLIKHGVRTAHTGDHLPMFHVTSDRLIQDPDAIRVEDSAGSRSIVSSVQIQ 3536
            +  H L TR LIK G++   +GDHLP+FHVTSDRLI+DP A RV  +    S+    ++ 
Sbjct: 1453 MEKHQLVTRTLIKKGMQPPSSGDHLPVFHVTSDRLIRDPSAKRV-STYEYDSVSLPFELI 1511

Query: 3535 EDHFS 3521
            +DHFS
Sbjct: 1512 DDHFS 1516



 Score =  585 bits (1507), Expect = e-171
 Identities = 296/473 (62%), Positives = 351/473 (74%), Gaps = 20/473 (4%)
 Frame = -2

Query: 8647 TRVVKLLEAVTDPSTKAAHSELCFKYAKEAAHNAMRLAPFVVSDTEATTLERMGITTSPF 8468
            T V KLL+ ++DP+ +AA+S+ C   AK AA  AM +AP+ VS TEA TLER+GITTSPF
Sbjct: 2    TTVQKLLDQISDPNARAAYSQDCLSAAKTAATKAMTIAPYAVSQTEALTLERIGITTSPF 61

Query: 8467 ATTPHTHAGDKIIENDCLSIIGHYLPKEPVTFIQLKKGKLHLLNRAPKQDVLANYCHEPK 8288
            ATT HTHA DKIIENDCL IIG YLPKEPVT IQLK+ KLHLL R P  D+  NYCHEPK
Sbjct: 62   ATTSHTHAADKIIENDCLDIIGRYLPKEPVTLIQLKRAKLHLLRRGPSGDIFKNYCHEPK 121

Query: 8287 DVLRYGITNPDYCPRVDTQTAVIADTLHFMSTRQLTQLFLCNPNLCTVFATLVLPIEALH 8108
            DVLR+GITNP  CP+V+T  AVI+DTLHFMST+Q+  LF  NP L  ++ TLVLPIEALH
Sbjct: 122  DVLRFGITNPHICPQVNTACAVISDTLHFMSTQQVWTLFQDNPTLERLYGTLVLPIEALH 181

Query: 8107 KLPSLFPEIYRLEYYKKHFAYMPGGHGGGAYVHSYETLKWLSTGQIG-------QSYTNP 7949
            +LPSLFPEIY+LEYY +HFAYMPGGHGGGAYVHSY TLKWLST QIG       +S TN 
Sbjct: 182  RLPSLFPEIYKLEYYDQHFAYMPGGHGGGAYVHSYGTLKWLSTAQIGPGPYPEYRSTTNG 241

Query: 7948 RLGTTDYISIEKIETKAAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANV 7769
            R    D++S+EKIETKAAHHI+LI RR+ + PWPL P+WVFH SDYV+LP +FYP EANV
Sbjct: 242  RRPLLDHLSVEKIETKAAHHIVLIQRRRPELPWPLPPVWVFHASDYVKLPEIFYPAEANV 301

Query: 7768 QNTYPHDLVKRMQAYCFSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITG 7589
            Q  YPH  +KR+Q YCFSVKAVSLRDIFAK+RQVI T EL R+S ADLIRLANYLL ITG
Sbjct: 302  QKAYPHIFIKRLQLYCFSVKAVSLRDIFAKIRQVIPTEELARFSTADLIRLANYLLFITG 361

Query: 7588 MEQVSDYECLLTKGWLAKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCV 7409
            M+  SDY+  L +  L KL   IR RVR+ F+++ G++SYAALL+VTDV P+ FTT P  
Sbjct: 362  MQSTSDYQSPLMESLLGKLCLSIRARVREFFQNILGRSSYAALLTVTDVRPIYFTTTPKR 421

Query: 7408 RGCDGISWL-----PEPEEINRPPPDEPGPTLEDLEMMAD--------LHNAQ 7289
            R   G +W       EP   NR       P+ +DL+++A+        LHN Q
Sbjct: 422  RRICGEAWFDSLENEEPSPPNRNVTGYQQPSPDDLDLLAEFEKQSSEALHNEQ 474


>ref|YP_009110668.1| replicase [Garlic virus B]
 gb|AIX10975.1| replicase [Garlic virus B]
          Length = 1531

 Score = 1213 bits (3139), Expect = 0.0
 Identities = 620/1030 (60%), Positives = 741/1030 (71%), Gaps = 14/1030 (1%)
 Frame = -2

Query: 6568 QAAREGLNVPAQTTTRRGP---PTPDHSPPAGEAERSTASPPRHPPTTSYPRQN-----Q 6413
            Q + E  N   Q+T        P    +   G A  S      HP        +     Q
Sbjct: 459  QPSSENPNPKQQSTAHSSAERAPNGKFTNVGGRAPESVHETQDHPQQVKEGNDDNMVDGQ 518

Query: 6412 ESPQTQSDANQEGNSAAEPEQDTSFPNLDEAMF---EPAREEYTTAGDHDAAATRAEHHS 6242
             +  T SD +Q  N +    +      L + +    +   E  +  G+ D     A   S
Sbjct: 519  FTDCTDSDCDQSDNESDSDSECQESQQLQDDLLPDEDDLPELESVPGELDTENPEAALES 578

Query: 6241 SRSNPAA--DDSNIVLSSALEASDRLEPNTSHIASAYPHLSPHQVEILAKHGFTNLKQQF 6068
              + P A  +D +   SS    +   +P T+   +  P L    ++IL  HGFTN K Q 
Sbjct: 579  DETEPTAKAEDDDDGESSEDAQTSSSKPETTPGVALEP-LDDETIDILKMHGFTNYKPQH 637

Query: 6067 SGTGAIEPIFENPRASNFSVAPP-TSRSQRIVSSMAASIYRQVYSYPIDSKRATAYMSDV 5891
             G   I P+F N +A    +     + +Q     MA ++ R  Y+Y +D+KRATA+MSDV
Sbjct: 638  DGEFQIPPVFYNRQARFLPLHEGIVNTAQSRFLDMAQALKRNCYNYRLDAKRATAFMSDV 697

Query: 5890 KNNLTGLVLPKLSRETLSAWVALCEHSTRDVKLLVIHGAGGAGKSRCLQTMLLDHPALAE 5711
            KNNLTGLVLPKL R+ L++WVAL E++ R+V L+VIHGAGGAGKSR LQ ++ +      
Sbjct: 698  KNNLTGLVLPKLDRDLLTSWVALAENAKRNVGLIVIHGAGGAGKSRALQELMRNGLVDTN 757

Query: 5710 DVNIITPTVNLVLDWRKKNPQIDPRRFITFEKACEREGREVVIFDDYGKLPAGYIDAYLA 5531
            +VNII PT+NL +DW+KK P +DPRR +TFEKACEREG+ +VI DDYGKLPAGY+DAYLA
Sbjct: 758  EVNIIVPTINLAVDWKKKLPSVDPRRIMTFEKACEREGKSIVIMDDYGKLPAGYVDAYLA 817

Query: 5530 IKPTVEMIILTGDQRQSTHHCTNRDAQTANIQNNVHHFRRYCDYYINATHRQPRRLANPI 5351
            IK  VEM+ILTGDQRQS  H   +D+Q A + +N  HF+RYCDYY+NATHRQPRRLANPI
Sbjct: 818  IKFNVEMVILTGDQRQSVFHNDKKDSQIALLSSNTDHFKRYCDYYLNATHRQPRRLANPI 877

Query: 5350 EVHAEQEAGGAVTHASIIPENCTALVPSHRSQAVLADLGRVAYTYSGCQGLTLNHVTIVL 5171
            +VHAE+E GGA+ HA++IP N   LVP+ RSQ++L DLGR A TY+GCQGLTL H+TIVL
Sbjct: 878  KVHAEREIGGAIKHATLIPTNAMTLVPAFRSQSLLTDLGRQAMTYAGCQGLTLPHLTIVL 937

Query: 5170 DADTPLCSPEVLYTAFSRAASTITFVNTHSEHPQFLRKLDATPYLKTLISGVREDEDAGK 4991
            D DTPLCS EVLYTA SRA+ TITFVNTHS +  FL KLD+TPYLKTLISGVREDE AG+
Sbjct: 938  DKDTPLCSDEVLYTALSRASETITFVNTHSNNKDFLAKLDSTPYLKTLISGVREDEQAGR 997

Query: 4990 DVSPEEPQAPKPSVKTHLPVENDATFLEPKIEAMLDKDVRELWDGREKTNLMQTQDPVVQ 4811
            D +P EP       KTH+PV ND   L+ KIEAM DKD RELW G EKTNLMQTQDP +Q
Sbjct: 998  DNAPPEPIVRDGPTKTHIPVANDKIQLDDKIEAMEDKDTRELWSGEEKTNLMQTQDPTIQ 1057

Query: 4810 LFPHQQAKDEALFRITIDKRIKTATVDENTKAIVGRLHAGDLLFEAYAKFMRVPKEPQPF 4631
            LFPHQQAKDEALF+ITI++RI+ A  + N KA+   ++AGDLLFEAYA FM VP+E QPF
Sbjct: 1058 LFPHQQAKDEALFKITINERIRLAAPETNRKALKDTINAGDLLFEAYASFMNVPRETQPF 1117

Query: 4630 DPELWRHCRQLALRTYLSKPKANLVQGTARQDPDFPDNAIALFNKSQWVKKLEKVGFKFK 4451
            D  LW HCRQLALRTYLSKP +NL QG  RQDPDFPDNAIALFNKSQWVKKLEKVG KFK
Sbjct: 1118 DKRLWAHCRQLALRTYLSKPTSNLQQGAQRQDPDFPDNAIALFNKSQWVKKLEKVGCKFK 1177

Query: 4450 AGQTISAFKQSTVLLTTTMALYLRKKREQHQPENVFIMCEKTPADFNDFVTNRWDFSCDS 4271
            AGQTISAFKQSTVLLTTTMALYLRKKRE HQP+NVF+MCEKTP  FN FV  +WDFS  +
Sbjct: 1178 AGQTISAFKQSTVLLTTTMALYLRKKREGHQPDNVFVMCEKTPEQFNSFVLTKWDFSRPN 1237

Query: 4270 YTSDYEQYDQSQDASFLNFELRKAKHLGVPDSVTDFYRFIKTHARTFIGNLAIMRLSGEG 4091
            YTSDY QYDQSQD++FLNFELRKA+H G+PD V DFY F+KTHA+TF+GNLA+MRLSGEG
Sbjct: 1238 YTSDYTQYDQSQDSAFLNFELRKARHFGLPDEVVDFYAFVKTHAKTFLGNLAVMRLSGEG 1297

Query: 4090 PTFDANTECNIAYDALRFQLTDTVNACYAGDDLVRDKVCEERASWSFSQHLFELTAKPQS 3911
            PTFDANTECNIAYDALRFQL  +VNACYAGDDLVRDK C+ER  W +S+ LF L AKP  
Sbjct: 1298 PTFDANTECNIAYDALRFQLDPSVNACYAGDDLVRDKACDERPGWKYSEPLFSLKAKPLV 1357

Query: 3910 TRKPDFCGWRLTPYGIVKNPTQLYQSLQLALHLNKMEDVKRSYAIDYTHAYRLQDRLFEI 3731
            T KPDFCGWRLT YGIVK+P QLYQSLQLAL L K+E+VKRSYAIDY  AYRL D+L++I
Sbjct: 1358 TNKPDFCGWRLTKYGIVKSPIQLYQSLQLALRLGKVEEVKRSYAIDYLFAYRLGDQLYDI 1417

Query: 3730 FDEKEIAAHHLTTRLLIKHGVRTAHTGDHLPMFHVTSDRLIQDPDAIRVEDSAGSRSIVS 3551
            FDE E+A H L TR LIK G++   +G+HLP FHVTSDRLIQDP A +V      R ++ 
Sbjct: 1418 FDEDELAKHQLVTRTLIKKGMQPPSSGEHLPTFHVTSDRLIQDPRATKVSTFESDR-VIL 1476

Query: 3550 SVQIQEDHFS 3521
             ++I +DHF+
Sbjct: 1477 PLEIIDDHFA 1486



 Score =  566 bits (1458), Expect = e-165
 Identities = 284/459 (61%), Positives = 340/459 (74%), Gaps = 5/459 (1%)
 Frame = -2

Query: 8647 TRVVKLLEAVTDPSTKAAHSELCFKYAKEAAHNAMRLAPFVVSDTEATTLERMGITTSPF 8468
            T V KLL+ ++DP+ +AA+S+ C   AK AA  AM +AP+ V+ TEA TLER+GITTSPF
Sbjct: 2    TTVQKLLDQISDPNARAAYSQDCLSAAKHAATKAMTIAPYAVTQTEALTLERIGITTSPF 61

Query: 8467 ATTPHTHAGDKIIENDCLSIIGHYLPKEPVTFIQLKKGKLHLLNRAPKQDVLANYCHEPK 8288
            ATT HTHA DKIIENDCL IIG YLPK+ VT IQLK+ KLHLL R P  DV  NYCHEPK
Sbjct: 62   ATTSHTHAADKIIENDCLDIIGRYLPKDSVTLIQLKRAKLHLLKRGPNTDVFRNYCHEPK 121

Query: 8287 DVLRYGITNPDYCPRVDTQTAVIADTLHFMSTRQLTQLFLCNPNLCTVFATLVLPIEALH 8108
            DVLR+G+TNP  CP VDT  AVI+DTLHFMS++Q+  LF  NP L  ++ TLVLPIEAL+
Sbjct: 122  DVLRFGLTNPHSCPVVDTPCAVISDTLHFMSSQQVWTLFERNPRLQKLYGTLVLPIEALN 181

Query: 8107 KLPSLFPEIYRLEYYKKHFAYMPGGHGGGAYVHSYETLKWLSTGQIGQSYTNPRLGTTDY 7928
            KLPSLFPEIY+LEYY+KHFAYMPGGHGGGAY+HSY TLKWL+T QIG           ++
Sbjct: 182  KLPSLFPEIYKLEYYEKHFAYMPGGHGGGAYIHSYGTLKWLNTAQIGTE--------GNH 233

Query: 7927 ISIEKIETKAAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHD 7748
            +SIEKIETKAAHHI+LI RR+ Q  WPL PLWVFH SDYV+LP +FYP EANVQ  Y H 
Sbjct: 234  LSIEKIETKAAHHIVLIQRRRPQLSWPLPPLWVFHASDYVKLPEIFYPSEANVQKAYSHV 293

Query: 7747 LVKRMQAYCFSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDY 7568
             +KR+Q YCFSVKAVSLRDIFAK+RQV+ T EL R+S ADLIRLANYLL ITGM+Q SDY
Sbjct: 294  FIKRLQLYCFSVKAVSLRDIFAKIRQVLPTEELSRFSTADLIRLANYLLFITGMQQTSDY 353

Query: 7567 ECLLTKGWLAKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGIS 7388
            +  L +    K+   IR RVR+  ++L GK+SYAALL+VTDV PV FTT P  R   G  
Sbjct: 354  QSPLMESLFGKMCLSIRARVREFLQNLMGKSSYAALLTVTDVRPVYFTTKPVRRAICGHQ 413

Query: 7387 WLPE---PEEINRPP--PDEPGPTLEDLEMMADLHNAQR 7286
            W  +    EE    P     P P+ +DL+++A+    ++
Sbjct: 414  WFEDEEKDEETGTTPSITGYPSPSPDDLDLLAEFERHEQ 452


>gb|AEV51816.1| replicase, partial [Garlic virus C]
          Length = 1352

 Score = 1212 bits (3136), Expect = 0.0
 Identities = 623/1031 (60%), Positives = 745/1031 (72%), Gaps = 5/1031 (0%)
 Frame = -2

Query: 6598 RAQPKPILSGQAAREGLNVPAQTTTRRGPPTPDHSPPAGEAERSTASPPRHPPTTSYPRQ 6419
            + Q  PI   +   E  NV      +  P    +SP     ++S ++   H    S    
Sbjct: 301  QTQTSPIYDNERIDERSNVH-----KSAPTDEQNSPGRAREDQSDSTSDGHVTDWSDSES 355

Query: 6418 NQESPQTQSDANQE--GNSAAEPEQDTSFPNLDEAMFEPAREEYTTAGDHDAAATRAEHH 6245
            + +S   QS    +   + A  PE +   P L+E   EP+     +A   D +A      
Sbjct: 356  DTDSHDQQSQTADDLLFDEADLPELEEVEPELEETQTEPSPAPEESA---DLSACEDVSF 412

Query: 6244 SSRSNPAADDSNIVLSSALEASDRLEPNTSHIASAYPHLSPHQVEILAKHGFTNLKQQFS 6065
            +    P A+ +  +  S      +LEP           L    VEIL  HGFTNLK Q  
Sbjct: 413  NESVEPCAESAAELRGSDKLTKVKLEP-----------LDEETVEILKIHGFTNLKPQHD 461

Query: 6064 GTGAIEPIFENPRASN---FSVAPPTSRSQRIVSSMAASIYRQVYSYPIDSKRATAYMSD 5894
            G   I P+F N +A +   +     T++S  I   MA ++ R  Y Y +D+KRATA+MSD
Sbjct: 462  GQFQISPVFYNRQARHLPHYDGIVTTTQSHFI--DMARALKRSCYRYRLDAKRATAFMSD 519

Query: 5893 VKNNLTGLVLPKLSRETLSAWVALCEHSTRDVKLLVIHGAGGAGKSRCLQTMLLDHPALA 5714
            VKNNLTGLVLPKL R+ L++WVAL E++ R V L+VIHGAGGAGKSR LQ +L       
Sbjct: 520  VKNNLTGLVLPKLDRDLLASWVALAENAKRSVGLIVIHGAGGAGKSRALQELLRHEKLDN 579

Query: 5713 EDVNIITPTVNLVLDWRKKNPQIDPRRFITFEKACEREGREVVIFDDYGKLPAGYIDAYL 5534
             +VNI+ PT+NL  DW++K P +DPRR +TFEKACEREG+ +VI DDYGKLPAGYIDAYL
Sbjct: 580  NEVNIVVPTINLAADWKRKLPSMDPRRIMTFEKACEREGKSIVIMDDYGKLPAGYIDAYL 639

Query: 5533 AIKPTVEMIILTGDQRQSTHHCTNRDAQTANIQNNVHHFRRYCDYYINATHRQPRRLANP 5354
            AIK  VE++ILTGDQRQS  H   +D+Q A + +N  +++RYCDYY+NATHRQP+RLANP
Sbjct: 640  AIKFNVELVILTGDQRQSVFHNDKKDSQIALLSSNTDYYKRYCDYYLNATHRQPQRLANP 699

Query: 5353 IEVHAEQEAGGAVTHASIIPENCTALVPSHRSQAVLADLGRVAYTYSGCQGLTLNHVTIV 5174
            I+VHA++E GGA+ HA++IP N   LVP+ RSQ++L DLGR A TY+GCQGLTL H+TIV
Sbjct: 700  IKVHAQREVGGAIKHATLIPPNAMTLVPAFRSQSLLTDLGRQAMTYAGCQGLTLPHLTIV 759

Query: 5173 LDADTPLCSPEVLYTAFSRAASTITFVNTHSEHPQFLRKLDATPYLKTLISGVREDEDAG 4994
            LD DTPLCS EVLYTA SRA+ TITFVNTHS + +FL KLD+TPYLKTLISGVREDE+AG
Sbjct: 760  LDKDTPLCSDEVLYTALSRASETITFVNTHSNNKEFLDKLDSTPYLKTLISGVREDEEAG 819

Query: 4993 KDVSPEEPQAPKPSVKTHLPVENDATFLEPKIEAMLDKDVRELWDGREKTNLMQTQDPVV 4814
            ++  P EP   +   KTH+P+ N+   LE KIE M DKD RELW G EKTNLMQTQDPV+
Sbjct: 820  REQPPPEPVVREGPTKTHIPISNNNVQLENKIETMEDKDTRELWSGEEKTNLMQTQDPVI 879

Query: 4813 QLFPHQQAKDEALFRITIDKRIKTATVDENTKAIVGRLHAGDLLFEAYAKFMRVPKEPQP 4634
            QLFPHQQAKDEALF+ITI++RI+ AT + N +A+   L+AGDLLFEAYA FM VP+E Q 
Sbjct: 880  QLFPHQQAKDEALFKITINERIRLATPEANKRALTETLNAGDLLFEAYASFMNVPRETQA 939

Query: 4633 FDPELWRHCRQLALRTYLSKPKANLVQGTARQDPDFPDNAIALFNKSQWVKKLEKVGFKF 4454
            FD  LW HCRQLALRTYLSKP ANL QG  RQDPDFPDNAIALFNKSQWVKKLEKVG +F
Sbjct: 940  FDKRLWAHCRQLALRTYLSKPTANLQQGAKRQDPDFPDNAIALFNKSQWVKKLEKVGCRF 999

Query: 4453 KAGQTISAFKQSTVLLTTTMALYLRKKREQHQPENVFIMCEKTPADFNDFVTNRWDFSCD 4274
            KAGQTISAFKQSTVLLTTTMALYLRKKRE HQP+NVFIMCEKTP  FN FV   WDFS  
Sbjct: 1000 KAGQTISAFKQSTVLLTTTMALYLRKKREGHQPDNVFIMCEKTPEQFNSFVLTNWDFSRP 1059

Query: 4273 SYTSDYEQYDQSQDASFLNFELRKAKHLGVPDSVTDFYRFIKTHARTFIGNLAIMRLSGE 4094
            +YTSDY QYDQSQDA+FLNFELRKA+H GVPD V DFY FIKTHA+TF+GNLA+MRLSGE
Sbjct: 1060 NYTSDYTQYDQSQDAAFLNFELRKARHFGVPDEVVDFYAFIKTHAKTFLGNLAVMRLSGE 1119

Query: 4093 GPTFDANTECNIAYDALRFQLTDTVNACYAGDDLVRDKVCEERASWSFSQHLFELTAKPQ 3914
            GPTFDANTECNIAYDALRFQL  TV ACYAGDDLVRDK CEER  W +S+ LF L AKP 
Sbjct: 1120 GPTFDANTECNIAYDALRFQLDHTVKACYAGDDLVRDKACEERPGWKYSEPLFSLKAKPL 1179

Query: 3913 STRKPDFCGWRLTPYGIVKNPTQLYQSLQLALHLNKMEDVKRSYAIDYTHAYRLQDRLFE 3734
             T KPDFCGWRLT YGIVK+P QLYQSLQLAL L K+E+VKRSYAIDY  AYRL D+L++
Sbjct: 1180 VTNKPDFCGWRLTKYGIVKSPVQLYQSLQLALKLGKVEEVKRSYAIDYLFAYRLGDQLYD 1239

Query: 3733 IFDEKEIAAHHLTTRLLIKHGVRTAHTGDHLPMFHVTSDRLIQDPDAIRVEDSAGSRSIV 3554
            IFDE E+A H L TR LIK G++   +G+HLP FHVTSDRLI+DP A+++      R I+
Sbjct: 1240 IFDEDEMAKHQLVTRTLIKKGMQPPSSGEHLPTFHVTSDRLIRDPRALKLSTFESDR-IM 1298

Query: 3553 SSVQIQEDHFS 3521
              ++I +DHF+
Sbjct: 1299 LPLEIIDDHFT 1309



 Score =  349 bits (896), Expect = 1e-94
 Identities = 175/283 (61%), Positives = 210/283 (74%), Gaps = 4/283 (1%)
 Frame = -2

Query: 8119 EALHKLPSLFPEIYRLEYYKKHFAYMPGGHGGGAYVHSYETLKWLSTGQIGQSYTNPRLG 7940
            EA+HKLPSLFPEIY+LEYY KHFAYMPGGHGGGAY+HSY TLKWLST QIG         
Sbjct: 1    EAIHKLPSLFPEIYKLEYYDKHFAYMPGGHGGGAYIHSYGTLKWLSTAQIGSG------- 53

Query: 7939 TTDYISIEKIETKAAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNT 7760
             ++++SIEKIETKAAHHI++I RR+ + PWPL P+WVFH SDYVRLP +FYP EANVQ  
Sbjct: 54   -SNHLSIEKIETKAAHHIVVIQRRRPELPWPLPPVWVFHASDYVRLPEIFYPKEANVQRP 112

Query: 7759 YPHDLVKRMQAYCFSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQ 7580
            YPH  +KR+Q YCFSVKAVSLRDIFAK+RQV+ T EL R+S ADLIRLANYLL ITGM+Q
Sbjct: 113  YPHVFIKRLQLYCFSVKAVSLRDIFAKIRQVLPTEELARFSTADLIRLANYLLFITGMQQ 172

Query: 7579 VSDYECLLTKGWLAKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGC 7400
             SDY+  L +  L K+   IR R+R+ F+ L GK+SYAALL+VTDV PV FTT P  R  
Sbjct: 173  TSDYQSPLMESLLGKICLSIRARIREFFQDLMGKSSYAALLTVTDVRPVYFTTKPVRRPV 232

Query: 7399 DGISWLPEPE-EINRPPPDEPG---PTLEDLEMMADLHNAQRL 7283
             G  W  E E E +R  P   G   P+ +DL+++A+    + L
Sbjct: 233  CGEQWFKEEEVEEDRVAPSPTGYQRPSPDDLDLLAEFEQQEIL 275


>gb|AFV61767.1| replicase [Garlic virus X]
          Length = 1544

 Score = 1211 bits (3134), Expect = 0.0
 Identities = 619/1013 (61%), Positives = 742/1013 (73%), Gaps = 2/1013 (0%)
 Frame = -2

Query: 6436 TSYPRQNQESPQTQSDANQEGNSAAEPEQDTSFPNL-DEAMFEPAREEYTTAGDHDAAAT 6260
            T +   + +     S+ + E N  ++  QD   P++ D    E   +E   A D++ +A 
Sbjct: 533  TDWTDSDSDHDDADSETHPETN-LSQTIQDDMLPDVSDLPELESIADEQGDAEDNEDSAN 591

Query: 6259 RAEHHSSRSNPAADDSNIVLSSALEASDRLEPNTSHIASAYPHLSPHQVEILAKHGFTNL 6080
                H + ++    D        +E+S ++   TS +      L    VEIL  HGFTN 
Sbjct: 592  DQADHCNTTHDTETDKPATTPVEVESSPKI---TSRVDLT--PLDSDTVEILKLHGFTNY 646

Query: 6079 KQQFSGTGAIEPIFENPRASNFSVAPPTSRS-QRIVSSMAASIYRQVYSYPIDSKRATAY 5903
            K Q  G   I P+F N +A    +    + S Q     MA ++ R  Y+Y +D+KRATA+
Sbjct: 647  KPQHDGDFQIAPVFYNHQACQLPLYDGITNSVQSKFIEMAHALKRNCYNYTLDAKRATAF 706

Query: 5902 MSDVKNNLTGLVLPKLSRETLSAWVALCEHSTRDVKLLVIHGAGGAGKSRCLQTMLLDHP 5723
            MSDVKNNLTGLVLPKL R+ L++WVAL E++ R V L+VIHGAGGAGKSR LQ +L  + 
Sbjct: 707  MSDVKNNLTGLVLPKLDRDLLTSWVALSENACRKVGLIVIHGAGGAGKSRALQEILRSNS 766

Query: 5722 ALAEDVNIITPTVNLVLDWRKKNPQIDPRRFITFEKACEREGREVVIFDDYGKLPAGYID 5543
                +VNII PT+NL +DW+KK P+IDPRR +TFEKACEREG+ VVI DDYGKLPAGYID
Sbjct: 767  IDTNEVNIIVPTINLAVDWKKKMPKIDPRRVMTFEKACEREGKSVVIMDDYGKLPAGYID 826

Query: 5542 AYLAIKPTVEMIILTGDQRQSTHHCTNRDAQTANIQNNVHHFRRYCDYYINATHRQPRRL 5363
            AYLAIK  VE++ILTGDQRQS  H   +D+Q A + +N  HF+RYCDYY+NATHRQPRRL
Sbjct: 827  AYLAIKFNVEIVILTGDQRQSVFHNDRKDSQIALLTSNTAHFKRYCDYYLNATHRQPRRL 886

Query: 5362 ANPIEVHAEQEAGGAVTHASIIPENCTALVPSHRSQAVLADLGRVAYTYSGCQGLTLNHV 5183
            ANPI VHAE+E GGA+ H+++IP +   LVP+ RSQ++L DLGR A TY+GCQGLTL H+
Sbjct: 887  ANPIRVHAEREVGGAIKHSTLIPTHAMTLVPAFRSQSLLTDLGRQAMTYAGCQGLTLPHL 946

Query: 5182 TIVLDADTPLCSPEVLYTAFSRAASTITFVNTHSEHPQFLRKLDATPYLKTLISGVREDE 5003
            TIVLD DTPLCS EVLYTA SRA+ TITFVNT+S +  FL KLD+TPYLKTLISGVREDE
Sbjct: 947  TIVLDKDTPLCSDEVLYTALSRASETITFVNTYSSNKDFLDKLDSTPYLKTLISGVREDE 1006

Query: 5002 DAGKDVSPEEPQAPKPSVKTHLPVENDATFLEPKIEAMLDKDVRELWDGREKTNLMQTQD 4823
             AG ++ P EP+      KTH+PV N+   LE KIE M DKD RELW G EKTNLMQTQD
Sbjct: 1007 QAGAEIPPPEPEVRDAPTKTHIPVANNNVQLESKIETMEDKDTRELWSGEEKTNLMQTQD 1066

Query: 4822 PVVQLFPHQQAKDEALFRITIDKRIKTATVDENTKAIVGRLHAGDLLFEAYAKFMRVPKE 4643
            PV+QLFPHQQAKDEALF+ITI++RIK A  + N KA+   L+ G+LLFEAYA FM VP+E
Sbjct: 1067 PVIQLFPHQQAKDEALFKITINERIKLANPETNCKALKETLNTGNLLFEAYANFMNVPRE 1126

Query: 4642 PQPFDPELWRHCRQLALRTYLSKPKANLVQGTARQDPDFPDNAIALFNKSQWVKKLEKVG 4463
             QPFD  LW HCRQLALRTYLSKP +NL QG  RQDPDFP+NAIALFNKSQWVKKLEKVG
Sbjct: 1127 TQPFDKRLWAHCRQLALRTYLSKPTSNLQQGAQRQDPDFPENAIALFNKSQWVKKLEKVG 1186

Query: 4462 FKFKAGQTISAFKQSTVLLTTTMALYLRKKREQHQPENVFIMCEKTPADFNDFVTNRWDF 4283
             KFKAGQTISAFKQSTVLLTTTMALYLRKKRE HQP+N+F+MCEKTP  FN FV  +WDF
Sbjct: 1187 CKFKAGQTISAFKQSTVLLTTTMALYLRKKRESHQPDNIFVMCEKTPEQFNSFVLTKWDF 1246

Query: 4282 SCDSYTSDYEQYDQSQDASFLNFELRKAKHLGVPDSVTDFYRFIKTHARTFIGNLAIMRL 4103
            S  +YTSDY QYDQSQD++FLNFELRKAKH G+PD + DFY FIKTHA+TF+GNLA+MRL
Sbjct: 1247 SRPNYTSDYTQYDQSQDSAFLNFELRKAKHFGLPDEIVDFYAFIKTHAKTFLGNLAVMRL 1306

Query: 4102 SGEGPTFDANTECNIAYDALRFQLTDTVNACYAGDDLVRDKVCEERASWSFSQHLFELTA 3923
            SGEGPTFDANTECNIAYDALRFQL  TVNACYAGDDLVRDK C+ER  W +++ LF L A
Sbjct: 1307 SGEGPTFDANTECNIAYDALRFQLDSTVNACYAGDDLVRDKACDERPGWKYAEPLFSLKA 1366

Query: 3922 KPQSTRKPDFCGWRLTPYGIVKNPTQLYQSLQLALHLNKMEDVKRSYAIDYTHAYRLQDR 3743
            KP  T KPDFCGWRLT YGIVK+P QLYQSLQLAL L K+E+VKRSYAIDY  AYRL D+
Sbjct: 1367 KPLVTSKPDFCGWRLTKYGIVKSPVQLYQSLQLALRLGKVEEVKRSYAIDYLFAYRLGDQ 1426

Query: 3742 LFEIFDEKEIAAHHLTTRLLIKHGVRTAHTGDHLPMFHVTSDRLIQDPDAIRVEDSAGSR 3563
            L++IFDE E+A H L TR LIK G++   +G+HLP FHVTSDRLI+DP AI+V      R
Sbjct: 1427 LYDIFDEDELAKHQLVTRTLIKKGMQPPSSGEHLPTFHVTSDRLIRDPKAIKVLSYESDR 1486

Query: 3562 SIVSSVQIQEDHFSPERPTCTTQFSTSPVKKFPRLIWLDGSPLN*FNTAA*LL 3404
             IV +  + EDHF+    T     +    ++   L     +P+N  N+A  LL
Sbjct: 1487 IIVPT-DVIEDHFTSASRTDRDDMTAESNRRASGLC----TPVNPRNSAGTLL 1534



 Score =  579 bits (1493), Expect = e-169
 Identities = 290/458 (63%), Positives = 342/458 (74%), Gaps = 4/458 (0%)
 Frame = -2

Query: 8647 TRVVKLLEAVTDPSTKAAHSELCFKYAKEAAHNAMRLAPFVVSDTEATTLERMGITTSPF 8468
            T V KLL+ ++DP+ +AA+S+ C   AK AA  AM +AP+ V+ TEA TLER+GITTSPF
Sbjct: 2    TTVQKLLDQISDPNARAAYSQDCLSAAKNAATKAMTIAPYAVTQTEALTLERIGITTSPF 61

Query: 8467 ATTPHTHAGDKIIENDCLSIIGHYLPKEPVTFIQLKKGKLHLLNRAPKQDVLANYCHEPK 8288
            ATT HTHA DKIIENDCL IIG YLPK  VT IQLK+ KLHLL R P  DV  NYCHEPK
Sbjct: 62   ATTSHTHAADKIIENDCLEIIGRYLPKGSVTLIQLKRAKLHLLKRGPNTDVFQNYCHEPK 121

Query: 8287 DVLRYGITNPDYCPRVDTQTAVIADTLHFMSTRQLTQLFLCNPNLCTVFATLVLPIEALH 8108
            DVLR+G+TNP  CP V+T  AVI+DTLHFMS++Q+  LF  NP L  ++ TLVLPIEAL+
Sbjct: 122  DVLRFGLTNPHVCPVVNTSCAVISDTLHFMSSQQVWTLFKRNPQLQRLYGTLVLPIEALN 181

Query: 8107 KLPSLFPEIYRLEYYKKHFAYMPGGHGGGAYVHSYETLKWLSTGQIGQSYTNPRLGTTDY 7928
            KLPSLFPEIY+LEYY  HFAYMPGGHGGGAY+HSY TLKWLST QIG          +++
Sbjct: 182  KLPSLFPEIYKLEYYDNHFAYMPGGHGGGAYIHSYGTLKWLSTAQIGTE--------SNH 233

Query: 7927 ISIEKIETKAAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHD 7748
            +SIEKIETK AHHIMLI RR+ + PWPL PLWVFH SDYVRLP +FYP EANVQ  YPH 
Sbjct: 234  LSIEKIETKGAHHIMLIQRRRPELPWPLPPLWVFHASDYVRLPEIFYPSEANVQRAYPHI 293

Query: 7747 LVKRMQAYCFSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDY 7568
             +KR+Q YCFSVKAVSLRDIFAK+RQVI T EL R+S ADLIRLANYLL ITGM+Q SDY
Sbjct: 294  FIKRLQLYCFSVKAVSLRDIFAKIRQVIPTEELSRFSTADLIRLANYLLFITGMQQTSDY 353

Query: 7567 ECLLTKGWLAKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGIS 7388
            +  L +  L KL   IR RVR+ F++L GK+SYAALL+VTDV PV FTT P  R   G  
Sbjct: 354  QSPLMESLLGKLCLSIRARVREFFQNLMGKSSYAALLTVTDVRPVYFTTKPIRRPICGQP 413

Query: 7387 WLPEPEEINRPPPDE----PGPTLEDLEMMADLHNAQR 7286
            W  E E  ++P        P P+ +DL+++A+    +R
Sbjct: 414  WFDEAEMESKPETPTITGYPNPSPDDLDLLAEFEQYER 451


>gb|AGG13294.1| Replicase [Garlic virus C]
          Length = 1529

 Score = 1211 bits (3132), Expect = 0.0
 Identities = 623/1031 (60%), Positives = 744/1031 (72%), Gaps = 5/1031 (0%)
 Frame = -2

Query: 6598 RAQPKPILSGQAAREGLNVPAQTTTRRGPPTPDHSPPAGEAERSTASPPRHPPTTSYPRQ 6419
            + Q  PI   +   E  N       +  P    +SP     ++S ++   H    S    
Sbjct: 478  QTQTSPIYDNERIDERSNAH-----KSAPTDGQNSPGRAREDQSDSTSDGHVTDWSDSES 532

Query: 6418 NQESPQTQSDANQE--GNSAAEPEQDTSFPNLDEAMFEPAREEYTTAGDHDAAATRAEHH 6245
            + +S   QS    +   + A  PE +   P L+E   EP+     +A   D +A      
Sbjct: 533  DTDSHDQQSQTADDLLFDEADLPELEEIEPELEETQTEPSPAPEESA---DLSACEDVSF 589

Query: 6244 SSRSNPAADDSNIVLSSALEASDRLEPNTSHIASAYPHLSPHQVEILAKHGFTNLKQQFS 6065
            +    P A+ +     S      +LEP           L    VEIL  HGFTNLK Q  
Sbjct: 590  NEPVEPCAESAAEPRGSDKLTKVKLEP-----------LDEETVEILKIHGFTNLKPQHD 638

Query: 6064 GTGAIEPIFENPRASN---FSVAPPTSRSQRIVSSMAASIYRQVYSYPIDSKRATAYMSD 5894
            G   I P+F N +A +   +     T++S  I   MA ++ R  Y Y +D+KRATA+MSD
Sbjct: 639  GQFQISPVFYNRQARHLPHYDGIVTTTQSHFI--DMARALKRSCYRYRLDAKRATAFMSD 696

Query: 5893 VKNNLTGLVLPKLSRETLSAWVALCEHSTRDVKLLVIHGAGGAGKSRCLQTMLLDHPALA 5714
            VKNNLTGLVLPKL R+ L++WVAL E++ R V L+VIHGAGGAGKSR LQ +L       
Sbjct: 697  VKNNLTGLVLPKLDRDLLASWVALAENAKRSVGLIVIHGAGGAGKSRALQELLRHEKLDN 756

Query: 5713 EDVNIITPTVNLVLDWRKKNPQIDPRRFITFEKACEREGREVVIFDDYGKLPAGYIDAYL 5534
             +VNI+ PT+NL  DW++K P +DPRR +TFEKACEREG+ +VI DDYGKLPAGYIDAYL
Sbjct: 757  NEVNIVVPTINLAADWKRKLPSMDPRRIMTFEKACEREGKSIVIMDDYGKLPAGYIDAYL 816

Query: 5533 AIKPTVEMIILTGDQRQSTHHCTNRDAQTANIQNNVHHFRRYCDYYINATHRQPRRLANP 5354
            AIK  VE++ILTGDQRQS  H   +D+Q A + +N  +++RYCDYY+NATHRQP+RLANP
Sbjct: 817  AIKFNVELVILTGDQRQSVFHNDKKDSQIALLSSNTDYYKRYCDYYLNATHRQPQRLANP 876

Query: 5353 IEVHAEQEAGGAVTHASIIPENCTALVPSHRSQAVLADLGRVAYTYSGCQGLTLNHVTIV 5174
            I+VHA++E GGA+ HA++IP N   LVP+ RSQ++L DLGR A TY+GCQGLTL H+TIV
Sbjct: 877  IKVHAQREVGGAIKHATLIPPNAMTLVPAFRSQSLLTDLGRQAMTYAGCQGLTLPHLTIV 936

Query: 5173 LDADTPLCSPEVLYTAFSRAASTITFVNTHSEHPQFLRKLDATPYLKTLISGVREDEDAG 4994
            LD DTPLCS EVLYTA SRA+ TITFVNTHS + +FL KLD+TPYLKTLISGVREDE+AG
Sbjct: 937  LDKDTPLCSDEVLYTALSRASETITFVNTHSNNKEFLDKLDSTPYLKTLISGVREDEEAG 996

Query: 4993 KDVSPEEPQAPKPSVKTHLPVENDATFLEPKIEAMLDKDVRELWDGREKTNLMQTQDPVV 4814
            ++  P EP   +   KTH+P+ N+   LE KIE M DKD RELW G EKTNLMQTQDPV+
Sbjct: 997  REQPPPEPVVREGPTKTHIPISNNNVQLENKIETMEDKDTRELWSGEEKTNLMQTQDPVI 1056

Query: 4813 QLFPHQQAKDEALFRITIDKRIKTATVDENTKAIVGRLHAGDLLFEAYAKFMRVPKEPQP 4634
            QLFPHQQAKDEALFRITI++RI+ AT + N +A+   L+AGDLLFEAYA FM VP+E Q 
Sbjct: 1057 QLFPHQQAKDEALFRITINERIRLATPEANKRALTETLNAGDLLFEAYASFMNVPRETQA 1116

Query: 4633 FDPELWRHCRQLALRTYLSKPKANLVQGTARQDPDFPDNAIALFNKSQWVKKLEKVGFKF 4454
            FD  LW HCRQLALRTYLSKP ANL QG  RQDPDFPDNAIALFNKSQWVKKLEKVG +F
Sbjct: 1117 FDKRLWAHCRQLALRTYLSKPTANLQQGAKRQDPDFPDNAIALFNKSQWVKKLEKVGCRF 1176

Query: 4453 KAGQTISAFKQSTVLLTTTMALYLRKKREQHQPENVFIMCEKTPADFNDFVTNRWDFSCD 4274
            KAGQTISAFKQSTVLLTTTMALYLRKKRE HQP+NVFIMCEKTP  FN FV  +WDFS  
Sbjct: 1177 KAGQTISAFKQSTVLLTTTMALYLRKKREGHQPDNVFIMCEKTPEQFNSFVLTKWDFSRP 1236

Query: 4273 SYTSDYEQYDQSQDASFLNFELRKAKHLGVPDSVTDFYRFIKTHARTFIGNLAIMRLSGE 4094
            +YTSDY QYDQSQDA+FLNFELRKA+H GVPD V DFY FIKTHA+TF+GNLA+MRLSGE
Sbjct: 1237 NYTSDYTQYDQSQDAAFLNFELRKARHFGVPDEVVDFYAFIKTHAKTFLGNLAVMRLSGE 1296

Query: 4093 GPTFDANTECNIAYDALRFQLTDTVNACYAGDDLVRDKVCEERASWSFSQHLFELTAKPQ 3914
            GPTFDANTECNIAYDALRFQL  TV ACYAGDDLVRDK CEER  W +S+ LF L AKP 
Sbjct: 1297 GPTFDANTECNIAYDALRFQLDHTVKACYAGDDLVRDKACEERPGWKYSEPLFSLKAKPL 1356

Query: 3913 STRKPDFCGWRLTPYGIVKNPTQLYQSLQLALHLNKMEDVKRSYAIDYTHAYRLQDRLFE 3734
             T KPDFCGWRLT YGIVK+P QLYQSLQLAL L K+E+VKRSYAIDY  AYRL D+L++
Sbjct: 1357 VTNKPDFCGWRLTKYGIVKSPVQLYQSLQLALKLGKVEEVKRSYAIDYLFAYRLGDQLYD 1416

Query: 3733 IFDEKEIAAHHLTTRLLIKHGVRTAHTGDHLPMFHVTSDRLIQDPDAIRVEDSAGSRSIV 3554
            IFDE E+A H L TR LIK G++   +G+HLP FHVTSDRLI+DP A+++      R I+
Sbjct: 1417 IFDEDEMAKHQLVTRTLIKKGMQPPSSGEHLPTFHVTSDRLIRDPRALKLSTFESDR-IM 1475

Query: 3553 SSVQIQEDHFS 3521
              ++I +DHF+
Sbjct: 1476 LPLEIIDDHFT 1486



 Score =  580 bits (1494), Expect = e-170
 Identities = 285/457 (62%), Positives = 344/457 (75%), Gaps = 4/457 (0%)
 Frame = -2

Query: 8647 TRVVKLLEAVTDPSTKAAHSELCFKYAKEAAHNAMRLAPFVVSDTEATTLERMGITTSPF 8468
            T V KLL+ ++DP+ +AA+S+ C   AK AA  AM +AP+ V+ TEA TLER+GITTSPF
Sbjct: 2    TAVQKLLDQISDPNARAAYSQECLSAAKNAATKAMTVAPYAVTQTEALTLERIGITTSPF 61

Query: 8467 ATTPHTHAGDKIIENDCLSIIGHYLPKEPVTFIQLKKGKLHLLNRAPKQDVLANYCHEPK 8288
            ATT HTHA DKIIENDCL II HYLPK+P+T IQLK+ KLHLL R P  D+  NYCHEPK
Sbjct: 62   ATTSHTHAADKIIENDCLEIISHYLPKDPITLIQLKRSKLHLLKRGPNDDIFQNYCHEPK 121

Query: 8287 DVLRYGITNPDYCPRVDTQTAVIADTLHFMSTRQLTQLFLCNPNLCTVFATLVLPIEALH 8108
            DVLR+G+TNP  CP V T  AVI+DTLHFMS++QL  LF  NP L  ++ TLVLP+EA+H
Sbjct: 122  DVLRFGLTNPHACPTVTTSCAVISDTLHFMSSQQLWTLFERNPALQRLYGTLVLPVEAIH 181

Query: 8107 KLPSLFPEIYRLEYYKKHFAYMPGGHGGGAYVHSYETLKWLSTGQIGQSYTNPRLGTTDY 7928
            KLPSLFPEIY+LEYY KHFAYMPGGHGGGAY+HSY TLKWLST QIG          +++
Sbjct: 182  KLPSLFPEIYKLEYYDKHFAYMPGGHGGGAYIHSYGTLKWLSTAQIGSG--------SNH 233

Query: 7927 ISIEKIETKAAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHD 7748
            +SIEKIETKAAHHI++I RR+ + PWPL P+WVFH SDYVRLP +FYP EANVQ  YPH 
Sbjct: 234  LSIEKIETKAAHHIVVIQRRRPELPWPLPPVWVFHASDYVRLPEIFYPKEANVQRPYPHV 293

Query: 7747 LVKRMQAYCFSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDY 7568
             +KR+Q YCFSVKAVSLRDIFAK+RQV+ T EL R+S ADLIRLANYLL ITGM+Q SDY
Sbjct: 294  FIKRLQLYCFSVKAVSLRDIFAKIRQVLPTEELARFSTADLIRLANYLLFITGMQQTSDY 353

Query: 7567 ECLLTKGWLAKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGIS 7388
            +  L +  L K+   IR R+R+ F+ L GK+SYAALL+VTDV P+ FTT P  R   G  
Sbjct: 354  QSPLMESLLGKICLSIRARIREFFQDLMGKSSYAALLTVTDVRPIYFTTKPVRRPVCGEQ 413

Query: 7387 WLPEPE-EINRPPPDEPG---PTLEDLEMMADLHNAQ 7289
            W  E E E +R  P   G   P+ +DL+++A+    +
Sbjct: 414  WFKEEEVEEDRVAPSPTGYQRPSPDDLDLLAEFEQQE 450


>gb|AGC09141.1| Replicase [Garlic virus A]
          Length = 1604

 Score = 1209 bits (3129), Expect = 0.0
 Identities = 639/1133 (56%), Positives = 779/1133 (68%), Gaps = 24/1133 (2%)
 Frame = -2

Query: 6802 PAPAAPPTDGASCSYDSNAGPKPPDTPPASPQRGVTSNPHSAPK--TRGPDDSALAFTFG 6629
            P PA   T G + S     G K     P +P        H   K  TR  +   +   F 
Sbjct: 475  PNPAKEQTPGTATS--ETPGSKETPIAPGNPTVPSLPKTHDVQKYSTRSSEQGTM---FE 529

Query: 6628 SITPSMFQPDRAQPKPILSGQAAREGLNVPAQTTTRRGPPTPDHSPPAGEAERSTASPPR 6449
            S TPS  Q +             ++ + +   TT  RG                T +P  
Sbjct: 530  SPTPSNDQLE-----------TNKQNVTIVNHTTAPRG-------------NDETGAPSL 565

Query: 6448 HPPTTSYPRQNQESPQTQSDANQEG---NSAAEPEQDTSFPNLDEAM------FEPAREE 6296
              P  + P       +  ++ +++    +S+++ +   S P+L+EA        E    +
Sbjct: 566  ITPNPNQPHDIHTQAECCNNDDEDAFSIDSSSDCDDCESMPSLEEATDADSLDLESIMPD 625

Query: 6295 YTT--AGDHDAAATRAEHHSSRSNPAADDSNIVLSSALEA-SDRLE-----PNTSHIASA 6140
             TT    + +  +  A    + S P    ++  +S   +  +D+ E      ++  +  A
Sbjct: 626  ITTEPCPNPEEVSNAALTEENESGPHDQQNDTPISGITDPEADKAEVADQATSSDQMQPA 685

Query: 6139 YPHLSPHQ---VEILAKHGFTNLKQQFSGTGAIEPIFENPRASNFSV--APPTSRSQRIV 5975
             P L P     V+IL  HGFT L+ Q  G   I+P++ N +        A     + +  
Sbjct: 686  RPRLEPLDHATVDILKLHGFTALQPQHDGADQIQPVYFNDKVKRHRQLEAKDLCATAKPF 745

Query: 5974 SSMAASIYRQVYSYPIDSKRATAYMSDVKNNLTGLVLPKLSRETLSAWVALCEHSTRDVK 5795
             ++AAS++R VY+Y I++KRATAYMSDVKNNLTGLVLPKL R+ LS+WVAL E +TR+V 
Sbjct: 746  VTLAASLHRGVYNYKINNKRATAYMSDVKNNLTGLVLPKLDRDLLSSWVALAERTTREVG 805

Query: 5794 LLVIHGAGGAGKSRCLQTMLLDHPALAEDVNIITPTVNLVLDWRKKNPQIDPRRFITFEK 5615
            LLVIHGAGGAGKSR LQ +L   P L E VNI+ PT+NL  DW+KK   +DPRR +TFEK
Sbjct: 806  LLVIHGAGGAGKSRALQELLRSSPELLEAVNIVVPTINLANDWKKKLSSMDPRRVMTFEK 865

Query: 5614 ACEREGREVVIFDDYGKLPAGYIDAYLAIKPTVEMIILTGDQRQSTHHCTNRDAQTANIQ 5435
            ACERE + V IFDDYGKLPAG++DAYLAIK  VE+ ILTGDQRQSTHH  +R++Q A + 
Sbjct: 866  ACERECKGVTIFDDYGKLPAGFVDAYLAIKVNVELAILTGDQRQSTHH-QDRESQIALLS 924

Query: 5434 NNVHHFRRYCDYYINATHRQPRRLANPIEVHAEQEAGGAVTHASIIPENCTALVPSHRSQ 5255
            +NV HF  Y DYYINATHRQPRRLANPI+VHAE+  GG+V  + ++P+    LVP+ RSQ
Sbjct: 925  SNVAHFAPYTDYYINATHRQPRRLANPIKVHAERLVGGSVRRSDLVPDRAMVLVPAFRSQ 984

Query: 5254 AVLADLGRVAYTYSGCQGLTLNHVTIVLDADTPLCSPEVLYTAFSRAASTITFVNTHSEH 5075
            ++L DLGR A TY+GCQGLTLNH+TIVLD DTPLCS EVLYTAFSRA+ +ITFVNTHS++
Sbjct: 985  SLLTDLGRQAMTYAGCQGLTLNHLTIVLDKDTPLCSEEVLYTAFSRASESITFVNTHSDN 1044

Query: 5074 PQFLRKLDATPYLKTLISGVREDEDAGKDVSPEEPQAPKPSVKTHLPVENDATFLEPKIE 4895
            P+FL KLDATPYLKTLIS VREDE AG    P EP       KTH+PV ND   L+ K+E
Sbjct: 1045 PEFLAKLDATPYLKTLISWVREDEQAGCSSPPPEPNVRDEPTKTHIPVTNDKVQLDDKVE 1104

Query: 4894 AMLDKDVRELWDGREKTNLMQTQDPVVQLFPHQQAKDEALFRITIDKRIKTATVDENTKA 4715
             M DKD RELW G EKTNLMQTQDP+VQLFPHQQ+KDEALF+IT+++RI+TA  ++N K+
Sbjct: 1105 TMEDKDTRELWSGEEKTNLMQTQDPIVQLFPHQQSKDEALFKITMNERIRTANPEKNAKS 1164

Query: 4714 IVGRLHAGDLLFEAYAKFMRVPKEPQPFDPELWRHCRQLALRTYLSKPKANLVQGTARQD 4535
            +   L+AGDLLFEAYA+FM+VP EPQ FD  LW HCRQLALRTYLSKP  NL QG +RQD
Sbjct: 1165 LQHTLNAGDLLFEAYAQFMKVPAEPQAFDKRLWTHCRQLALRTYLSKPATNLQQGASRQD 1224

Query: 4534 PDFPDNAIALFNKSQWVKKLEKVGFKFKAGQTISAFKQSTVLLTTTMALYLRKKREQHQP 4355
            PDFPDNAIALFNKSQWVKKLEKVG KFKAGQTISAFKQ  VLLTTTMALYLRKKREQHQP
Sbjct: 1225 PDFPDNAIALFNKSQWVKKLEKVGAKFKAGQTISAFKQQVVLLTTTMALYLRKKREQHQP 1284

Query: 4354 ENVFIMCEKTPADFNDFVTNRWDFSCDSYTSDYEQYDQSQDASFLNFELRKAKHLGVPDS 4175
            +NVFIMCE+TP  FN+FV  +WDFS  +YTSDY QYDQSQDA FLNFELRKA+HLGVPD 
Sbjct: 1285 DNVFIMCERTPEQFNNFVLTKWDFSRPNYTSDYTQYDQSQDAPFLNFELRKARHLGVPDE 1344

Query: 4174 VTDFYRFIKTHARTFIGNLAIMRLSGEGPTFDANTECNIAYDALRFQLTDTVNACYAGDD 3995
            V  FYRFIKTHA+TF+GNLAIMRLSGEGPTFDANTECNIAYDALRF+L D V ACYAGDD
Sbjct: 1345 VLAFYRFIKTHAKTFVGNLAIMRLSGEGPTFDANTECNIAYDALRFRLDDNVRACYAGDD 1404

Query: 3994 LVRDKVCEERASWSFSQHLFELTAKPQSTRKPDFCGWRLTPYGIVKNPTQLYQSLQLALH 3815
            LVRD+ CEERA W +S+ LF L AKP  T KPDFCGWRLTPYGIVK+P QLYQSLQLAL 
Sbjct: 1405 LVRDRACEERAGWVYSEPLFSLKAKPLVTNKPDFCGWRLTPYGIVKSPIQLYQSLQLALR 1464

Query: 3814 LNKMEDVKRSYAIDYTHAYRLQDRLFEIFDEKEIAAHHLTTRLLIKHGVRTAHTGDHLPM 3635
            L K+EDVKRSYAIDY  AYRL D+L++IFDE+E+  H L TR LIK G++   +G+HLP 
Sbjct: 1465 LGKVEDVKRSYAIDYLFAYRLGDKLYDIFDEEELEKHQLVTRTLIKKGMQPPESGNHLPT 1524

Query: 3634 FHVTSDRLIQDPDAIRVEDSAGSRSIVSSVQIQEDHFSPERPTCTTQFSTSPV 3476
            FH+TSDRLI DP AI+++     R ++    + ED+  P  P        +P+
Sbjct: 1525 FHITSDRLILDPRAIKIQSYESDRLLLHPPSVIEDYI-PRSPVGDDPTRAAPI 1576



 Score =  605 bits (1560), Expect = e-178
 Identities = 308/463 (66%), Positives = 356/463 (76%), Gaps = 10/463 (2%)
 Frame = -2

Query: 8647 TRVVKLLEAVTDPSTKAAHSELCFKYAKEAAHNAMRLAPFVVSDTEATTLERMGITTSPF 8468
            T V KL + ++DP+TKA +S  CF+ A+ A+  A+ +APF V++ EA TLER+GITTSPF
Sbjct: 2    TAVQKLFDQISDPNTKAGYSNACFEAAQTASKKALAIAPFSVTNPEALTLERIGITTSPF 61

Query: 8467 ATTPHTHAGDKIIENDCLSIIGHYLPK-EPVTFIQLKKGKLHLLNRAPKQDVLANYCHEP 8291
            ATT HTHA DKIIENDCLSIIGHYLPK E VT IQLK+GKLHLL R P  D   NYC+EP
Sbjct: 62   ATTSHTHAADKIIENDCLSIIGHYLPKKEAVTLIQLKRGKLHLLGRNPNLDKFQNYCYEP 121

Query: 8290 KDVLRYGITNPDYCPRVDTQTAVIADTLHFMSTRQLTQLFLCNPNLCTVFATLVLPIEAL 8111
            KDVLRYG+TNP+ CP+VDT+ AV+ADTLHFMS +QL  LF  NP L  +FATLVLPIEAL
Sbjct: 122  KDVLRYGLTNPNSCPKVDTEYAVLADTLHFMSPKQLYTLFSKNPKLERLFATLVLPIEAL 181

Query: 8110 HKLPSLFPEIYRLEYYKKHFAYMPGGHGGGAYVHSYETLKWLSTGQIG------QSYTNP 7949
            HKLPSLFP++Y+LEYYK HF+YMPGGHGGGAYVHSY TL+WL T Q+G         TNP
Sbjct: 182  HKLPSLFPDVYKLEYYKDHFSYMPGGHGGGAYVHSYSTLRWLDTAQVGPVDYDKSCITNP 241

Query: 7948 RLGTTDYISIEKIETKAAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANV 7769
                TDY+SIEKIETKAAHHIMLI RR+ Q  WPL  LWVFH SDYV+LPP+FYPPEANV
Sbjct: 242  -WPITDYLSIEKIETKAAHHIMLIQRRRVQVDWPLPTLWVFHASDYVKLPPIFYPPEANV 300

Query: 7768 QNTYPHDLVKRMQAYCFSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITG 7589
            Q TYPH  VKRMQ YCFSVKAVSLRDIFAKLRQVIET EL RYSMADLIRLANYLL ITG
Sbjct: 301  QKTYPHVFVKRMQLYCFSVKAVSLRDIFAKLRQVIETQELIRYSMADLIRLANYLLFITG 360

Query: 7588 MEQVSDYECLLTKGWLAKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCV 7409
            M Q+SDYE  L +    KL   IR R+R  F++L GKTSYAALL+VTDVIPV FTT P  
Sbjct: 361  MNQLSDYESPLLENLFGKLCASIRMRLRTFFQNLLGKTSYAALLTVTDVIPVHFTTTPRR 420

Query: 7408 RGCDGISWLPEPEEINRP--PPDEP-GPTLEDLEMMADLHNAQ 7289
            R   G SW    ++  +P   P +P GP+ +DL+++A  H  +
Sbjct: 421  REAVGESWFRSSDDEPKPKSEPTQPCGPSPDDLDLLAWFHELE 463


>gb|ALK24278.1| replicase [Garlic virus D]
          Length = 1562

 Score = 1204 bits (3115), Expect = 0.0
 Identities = 614/978 (62%), Positives = 715/978 (73%), Gaps = 3/978 (0%)
 Frame = -2

Query: 6445 PPTTSYPRQNQESPQTQSDANQEGNSAAEPEQDTSFPNLDEAMFEPAREEYTTAGDHDAA 6266
            PP  +     + S Q   D N           D   PN+DE       E      + D  
Sbjct: 560  PPLENCSECGENSTQELPDGN-----------DCDMPNIDEE-----NEAAENKIEPDGI 603

Query: 6265 ATRAEHHSSRSNPAADDSNIVLSSALEASDRLE--PNTSHIASAYPHLSPHQVEILAKHG 6092
            + +  H     +P  D  N    S  E S   E  P+          L    VE+L  HG
Sbjct: 604  SPQEPHE----DPEKDYVNNCDGSKTEHSPEHEDKPDKPVAKVKLNPLDDDTVELLKIHG 659

Query: 6091 FTNLKQQFSGTGAIEPIFENPRASNFSVAPPT-SRSQRIVSSMAASIYRQVYSYPIDSKR 5915
            FTN K Q+ G   I+PIF N  A   +    T +  Q+    MA  + R  Y Y I++KR
Sbjct: 660  FTNYKAQYDGEDQIQPIFRNANARFLTHYTTTVAGPQQCFIDMAHGLRRHCYEYRINAKR 719

Query: 5914 ATAYMSDVKNNLTGLVLPKLSRETLSAWVALCEHSTRDVKLLVIHGAGGAGKSRCLQTML 5735
            ATA+MSDVKNNLTGLVLPKL R+ LS+WV+L EH+TR V L+VIHGAGGAGKSR LQ +L
Sbjct: 720  ATAFMSDVKNNLTGLVLPKLERDLLSSWVSLAEHATRKVGLIVIHGAGGAGKSRALQELL 779

Query: 5734 LDHPALAEDVNIITPTVNLVLDWRKKNPQIDPRRFITFEKACEREGREVVIFDDYGKLPA 5555
                    +VNI+ PT+NL  DW+KK P +DPRR +TFEKACEREG+ VVI DDYGKLPA
Sbjct: 780  RSQTVDTNEVNIVVPTINLAADWKKKIPAVDPRRVMTFEKACEREGKPVVIMDDYGKLPA 839

Query: 5554 GYIDAYLAIKPTVEMIILTGDQRQSTHHCTNRDAQTANIQNNVHHFRRYCDYYINATHRQ 5375
            GY+DAYL+IK  VE+++LTGDQRQS +H   RD+Q A + +N  HF++YCDYY+NATHRQ
Sbjct: 840  GYVDAYLSIKSNVELVVLTGDQRQSVYHNDKRDSQIALLSSNTDHFKKYCDYYVNATHRQ 899

Query: 5374 PRRLANPIEVHAEQEAGGAVTHASIIPENCTALVPSHRSQAVLADLGRVAYTYSGCQGLT 5195
            PRRLANPI+VHAE+E GGAV HA++IPE    LVP+ RSQ++L DLGR A TY+GCQGLT
Sbjct: 900  PRRLANPIKVHAEREVGGAVKHATLIPETAMTLVPAFRSQSLLTDLGRQAMTYAGCQGLT 959

Query: 5194 LNHVTIVLDADTPLCSPEVLYTAFSRAASTITFVNTHSEHPQFLRKLDATPYLKTLISGV 5015
            L H+TIVLD DTPLCS +V+YTA SRA+ TITFVNTHS++ +F  KLD+TPYLKTLISGV
Sbjct: 960  LPHLTIVLDKDTPLCSDQVMYTALSRASETITFVNTHSDNREFQAKLDSTPYLKTLISGV 1019

Query: 5014 REDEDAGKDVSPEEPQAPKPSVKTHLPVENDATFLEPKIEAMLDKDVRELWDGREKTNLM 4835
            REDE  G D  P EP   +   KTH+PV ND   LE KIEAM DKD RELW G EKTNLM
Sbjct: 1020 REDELTGGDYKPPEPIVREGPTKTHMPVANDKIQLEDKIEAMEDKDTRELWSGEEKTNLM 1079

Query: 4834 QTQDPVVQLFPHQQAKDEALFRITIDKRIKTATVDENTKAIVGRLHAGDLLFEAYAKFMR 4655
            QTQDP+VQLFPHQQAKDEALF+ITI +R++TA  + N KA+   L+AGDLLFEAYAKFM 
Sbjct: 1080 QTQDPIVQLFPHQQAKDEALFKITIKERVRTADANTNRKAMHETLNAGDLLFEAYAKFMN 1139

Query: 4654 VPKEPQPFDPELWRHCRQLALRTYLSKPKANLVQGTARQDPDFPDNAIALFNKSQWVKKL 4475
            VP+E Q FD  LW HCRQLALRTYLSKP +NL QG  RQDPDFPDNAIALFNKSQWVKKL
Sbjct: 1140 VPQETQAFDKRLWAHCRQLALRTYLSKPTSNLQQGAQRQDPDFPDNAIALFNKSQWVKKL 1199

Query: 4474 EKVGFKFKAGQTISAFKQSTVLLTTTMALYLRKKREQHQPENVFIMCEKTPADFNDFVTN 4295
            EKVG KFKAGQTISAFKQSTVLLTTTMALYLRKKRE HQP NVF+MCEKTP  FN FV  
Sbjct: 1200 EKVGCKFKAGQTISAFKQSTVLLTTTMALYLRKKREGHQPANVFVMCEKTPEQFNSFVLT 1259

Query: 4294 RWDFSCDSYTSDYEQYDQSQDASFLNFELRKAKHLGVPDSVTDFYRFIKTHARTFIGNLA 4115
            RW+F   +YTSDY QYDQSQDA+FLNFELRKA+H G+P  + DFY FIKTHA+TF+GNLA
Sbjct: 1260 RWNFKRPNYTSDYTQYDQSQDAAFLNFELRKARHFGIPPEIVDFYAFIKTHAKTFLGNLA 1319

Query: 4114 IMRLSGEGPTFDANTECNIAYDALRFQLTDTVNACYAGDDLVRDKVCEERASWSFSQHLF 3935
            IMRLSGEGPTFDANTECNIAYDALRFQ+  TVNACYAGDDLVRDK CEER  W +++ LF
Sbjct: 1320 IMRLSGEGPTFDANTECNIAYDALRFQVDPTVNACYAGDDLVRDKACEERPGWKYAEPLF 1379

Query: 3934 ELTAKPQSTRKPDFCGWRLTPYGIVKNPTQLYQSLQLALHLNKMEDVKRSYAIDYTHAYR 3755
             L AKP  T KPDFCGWRLT YGIVK+P QLYQSLQLAL L K+E+VKRSYAIDY  AYR
Sbjct: 1380 SLKAKPLVTNKPDFCGWRLTKYGIVKSPVQLYQSLQLALRLGKVEEVKRSYAIDYLFAYR 1439

Query: 3754 LQDRLFEIFDEKEIAAHHLTTRLLIKHGVRTAHTGDHLPMFHVTSDRLIQDPDAIRVEDS 3575
            L D+L+E+FDE E+  H L TR LIK G++   +GDHLP+FHVTSDRLI+DP A RV  +
Sbjct: 1440 LGDQLYEVFDENEMEKHQLVTRTLIKKGMQPPTSGDHLPVFHVTSDRLIRDPTAKRV-ST 1498

Query: 3574 AGSRSIVSSVQIQEDHFS 3521
                S+    ++ +DHFS
Sbjct: 1499 YEYDSVSLPFELIDDHFS 1516



 Score =  583 bits (1504), Expect = e-171
 Identities = 292/460 (63%), Positives = 348/460 (75%), Gaps = 12/460 (2%)
 Frame = -2

Query: 8647 TRVVKLLEAVTDPSTKAAHSELCFKYAKEAAHNAMRLAPFVVSDTEATTLERMGITTSPF 8468
            T V KLL+ ++DP+ +AA+S+ C   AK AA  AM +AP+ V+ TEA TLER+GITTSPF
Sbjct: 2    TTVQKLLDQISDPNARAAYSQDCLSAAKNAATRAMTIAPYAVNQTEALTLERIGITTSPF 61

Query: 8467 ATTPHTHAGDKIIENDCLSIIGHYLPKEPVTFIQLKKGKLHLLNRAPKQDVLANYCHEPK 8288
            ATT HTHA DKIIENDCL IIG YLPKEPVT IQLK+ KLHLL R P  D+  NYCHEPK
Sbjct: 62   ATTSHTHAADKIIENDCLDIIGRYLPKEPVTLIQLKRAKLHLLRRGPSGDIFKNYCHEPK 121

Query: 8287 DVLRYGITNPDYCPRVDTQTAVIADTLHFMSTRQLTQLFLCNPNLCTVFATLVLPIEALH 8108
            DVLR+GITNP  CP+V+T  AVI+DTLHFMST+Q+  LF  NP+L  ++ TLVLPIEALH
Sbjct: 122  DVLRFGITNPHVCPQVNTTCAVISDTLHFMSTQQVWTLFQNNPSLERLYGTLVLPIEALH 181

Query: 8107 KLPSLFPEIYRLEYYKKHFAYMPGGHGGGAYVHSYETLKWLSTGQIG-------QSYTNP 7949
            KLPSLFPEIY+LEYY KHFAYMPGGHGGGAYVHSY TLKWLST QIG       +S  N 
Sbjct: 182  KLPSLFPEIYKLEYYDKHFAYMPGGHGGGAYVHSYGTLKWLSTAQIGPGPYPEYRSTANG 241

Query: 7948 RLGTTDYISIEKIETKAAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANV 7769
            R    D++SIEKIETKAAHHI+LI RR+ + PWPL P+WV+H SDYV+LP +FYP EANV
Sbjct: 242  RRPLLDHLSIEKIETKAAHHIVLIQRRRPELPWPLPPVWVYHASDYVKLPEIFYPAEANV 301

Query: 7768 QNTYPHDLVKRMQAYCFSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITG 7589
            Q  YPH  +KR+Q YCFSVKAVSLRDIFAK+RQVI T EL R+S ADLIRLANYLL ITG
Sbjct: 302  QKAYPHIFIKRLQLYCFSVKAVSLRDIFAKIRQVIPTEELARFSTADLIRLANYLLFITG 361

Query: 7588 MEQVSDYECLLTKGWLAKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCV 7409
            M+  SDY+  L +  L KL   IR RVR+ F+++ GK+SYAALL+VTDV P+ FTT P  
Sbjct: 362  MQSTSDYQSPLMESLLGKLCLSIRARVREFFQNILGKSSYAALLTVTDVRPIYFTTTPRR 421

Query: 7408 RGCDGISWLPEPEE-----INRPPPDEPGPTLEDLEMMAD 7304
            R   G +W    E+     +NR       P+ +DL+++A+
Sbjct: 422  RRICGEAWFDNIEDEESSPLNRNVTGYQQPSPDDLDLLAE 461


>emb|CAC83699.1| RNA-dependent RNA-polymerase [Garlic virus X]
          Length = 1544

 Score = 1202 bits (3111), Expect = 0.0
 Identities = 626/1074 (58%), Positives = 754/1074 (70%), Gaps = 22/1074 (2%)
 Frame = -2

Query: 6661 PDDSALAFTFGSITPSMFQPDRAQPKPILSGQAAREGLNVPAQTTTRRGPPTPDHSP--- 6491
            PDD  L   F        + D    +  ++   A+     P   T+     + D +    
Sbjct: 437  PDDLDLLAEFEQHERVTMEEDYTTSRTKVTSNRAQNTQQCPEHVTSENLAHSNDEAHTQI 496

Query: 6490 PAGEAERS-TASPPRHPPTTSYPRQNQESPQ--------TQSDANQE-GNSAAEPEQDTS 6341
            P  + E   T S  +  PT +  +   +           T SD++ +  +S   PE D S
Sbjct: 497  PKSQGENDHTRSTEQSRPTNTCEKFADDGDMMDGHITDWTDSDSDHDDADSETHPETDLS 556

Query: 6340 FPNLDEAM--------FEPAREEYTTAGDHDAAATRAEHHSSRSNPAADDSNIVLSSALE 6185
                D+ +         E   +E   A D++  A     H + ++ A  D        +E
Sbjct: 557  QTINDDMLPDMSDLPELESIADEQGDAEDNEDPANDQADHCNTTHDAETDKPATTPVEVE 616

Query: 6184 ASDRLEPNTSHIASAYPHLSPHQVEILAKHGFTNLKQQFSGTGAIEPIFENPRASNFSVA 6005
            +S ++   TS +      L    VEIL  HGFTN K Q  G   I P+F N +A    + 
Sbjct: 617  SSPKI---TSRVDLT--PLDSDTVEILRLHGFTNYKPQHDGDFQIAPVFYNHQACQLPLY 671

Query: 6004 PPTSRS-QRIVSSMAASIYRQVYSYPIDSKRATAYMSDVKNNLTGLVLPKLSRETLSAWV 5828
               + S Q     MA ++ R  Y+Y +D++RATA+MSDVKNNLTGLVLPKL R+ L++WV
Sbjct: 672  DGITNSVQSKFIEMAHALKRNCYNYTLDARRATAFMSDVKNNLTGLVLPKLDRDLLTSWV 731

Query: 5827 ALCEHSTRDVKLLVIHGAGGAGKSRCLQTMLLDHPALAEDVNIITPTVNLVLDWRKKNPQ 5648
            AL E++ R V L+VIHGAGGAGKSR LQ +L  +     +VNII PT+NL +DW+KK P+
Sbjct: 732  ALSENACRKVGLIVIHGAGGAGKSRALQEILRSNSIDTNEVNIIVPTINLAVDWKKKMPK 791

Query: 5647 IDPRRFITFEKACEREGREVVIFDDYGKLPAGYIDAYLAIKPTVEMIILTGDQRQSTHHC 5468
            IDPRR +TFEKACEREG+ VVI DDYGKLPAGYIDAYLAIK  VE++ILTGDQRQS  H 
Sbjct: 792  IDPRRVMTFEKACEREGKSVVIMDDYGKLPAGYIDAYLAIKFNVEIVILTGDQRQSVFHN 851

Query: 5467 TNRDAQTANIQNNVHHFRRYCDYYINATHRQPRRLANPIEVHAEQEAGGAVTHASIIPEN 5288
              +D+Q A + +N  HF+RYCDYY+NATHRQPRRLANPI VHAE+E GGA+ H+++IP +
Sbjct: 852  DRKDSQIALLTSNTAHFKRYCDYYLNATHRQPRRLANPIRVHAEREVGGAIKHSTLIPTH 911

Query: 5287 CTALVPSHRSQAVLADLGRVAYTYSGCQGLTLNHVTIVLDADTPLCSPEVLYTAFSRAAS 5108
               LVP+ RSQ++L DLGR A TY+GCQGLTL H+TIVLD DTPLCS EVLYTA SRA+ 
Sbjct: 912  AMTLVPAFRSQSLLTDLGRQAMTYAGCQGLTLPHLTIVLDKDTPLCSDEVLYTALSRASE 971

Query: 5107 TITFVNTHSEHPQFLRKLDATPYLKTLISGVREDEDAGKDVSPEEPQAPKPSVKTHLPVE 4928
            TITFVNT+S +  FL KLD+TPYLKTLISGVREDE AG +  P EP+      KTH+PV 
Sbjct: 972  TITFVNTYSNNKDFLDKLDSTPYLKTLISGVREDEQAGAEFPPPEPEVRDAPTKTHIPVA 1031

Query: 4927 NDATFLEPKIEAMLDKDVRELWDGREKTNLMQTQDPVVQLFPHQQAKDEALFRITIDKRI 4748
            N+   LE KIE M DKD RELW G EKTNLMQTQDPV+QLFPHQQAKDEALF+ITI++RI
Sbjct: 1032 NNNVQLESKIETMEDKDTRELWSGEEKTNLMQTQDPVIQLFPHQQAKDEALFKITINERI 1091

Query: 4747 KTATVDENTKAIVGRLHAGDLLFEAYAKFMRVPKEPQPFDPELWRHCRQLALRTYLSKPK 4568
            K A  + N KA+   L+ G+LLFEAYA FM VP+E QPFD  LW HCRQLALRTYLSKP 
Sbjct: 1092 KLANPETNCKALKETLNTGNLLFEAYASFMNVPRETQPFDKRLWAHCRQLALRTYLSKPT 1151

Query: 4567 ANLVQGTARQDPDFPDNAIALFNKSQWVKKLEKVGFKFKAGQTISAFKQSTVLLTTTMAL 4388
            +NL QG  RQDPDFP+NAIALFNKSQWVKKLEKVG KFKAGQTISAFKQSTVLLTTTMAL
Sbjct: 1152 SNLQQGARRQDPDFPENAIALFNKSQWVKKLEKVGCKFKAGQTISAFKQSTVLLTTTMAL 1211

Query: 4387 YLRKKREQHQPENVFIMCEKTPADFNDFVTNRWDFSCDSYTSDYEQYDQSQDASFLNFEL 4208
            YLRKKRE HQP+N+F+MCEKTP  FN FV  +WDF+  +YTSDY QYDQSQD++FLNFEL
Sbjct: 1212 YLRKKRESHQPDNIFVMCEKTPEQFNSFVLTKWDFTRPNYTSDYTQYDQSQDSAFLNFEL 1271

Query: 4207 RKAKHLGVPDSVTDFYRFIKTHARTFIGNLAIMRLSGEGPTFDANTECNIAYDALRFQLT 4028
            RKAKH G+PD V DFY FIKTHA+TF+GNLA+MRLSGEGPT DANTECNIAYDALRFQL 
Sbjct: 1272 RKAKHFGLPDEVVDFYAFIKTHAKTFLGNLAVMRLSGEGPTSDANTECNIAYDALRFQLD 1331

Query: 4027 DTVNACYAGDDLVRDKVCEERASWSFSQHLFELTAKPQSTRKPDFCGWRLTPYGIVKNPT 3848
             TVNACYAGDDLVRDK C+ER  W +++ LF L AKP  T KPDFCGWRLT YGIVK+P 
Sbjct: 1332 STVNACYAGDDLVRDKACDERPGWKYAEPLFSLKAKPLVTSKPDFCGWRLTKYGIVKSPV 1391

Query: 3847 QLYQSLQLALHLNKMEDVKRSYAIDYTHAYRLQDRLFEIFDEKEIAAHHLTTRLLIKHGV 3668
            QLYQSLQLAL L K+E+VKRSYAIDY  AYRL D+L++IFDE E+A H L TR LIK G+
Sbjct: 1392 QLYQSLQLALRLGKVEEVKRSYAIDYLFAYRLGDQLYDIFDEDELAKHQLVTRTLIKKGM 1451

Query: 3667 RTAHTGDHLPMFHVTSDRLIQDPDAIRVEDSAGSRSIVSSVQIQEDHFSPERPT 3506
            +   +G+HLP F VTSDRLI+DP A++V      R IV +  + EDHF+ +  T
Sbjct: 1452 QPPSSGEHLPTFRVTSDRLIRDPKAVKVLSYEADRIIVPT-DVFEDHFTSDSRT 1504



 Score =  582 bits (1501), Expect = e-170
 Identities = 292/459 (63%), Positives = 346/459 (75%), Gaps = 4/459 (0%)
 Frame = -2

Query: 8647 TRVVKLLEAVTDPSTKAAHSELCFKYAKEAAHNAMRLAPFVVSDTEATTLERMGITTSPF 8468
            T V KLL+ ++DP+ +AA+S+ C   AK AA  AM +AP+ V+ TEA TLER+GITTSPF
Sbjct: 2    TTVQKLLDQISDPNARAAYSQDCLSAAKNAATKAMTIAPYAVTQTEALTLERIGITTSPF 61

Query: 8467 ATTPHTHAGDKIIENDCLSIIGHYLPKEPVTFIQLKKGKLHLLNRAPKQDVLANYCHEPK 8288
            ATT HTHA DKIIENDCL IIG YLPKEPVT IQLK+ KLHLL R P  D+  NYCHEPK
Sbjct: 62   ATTSHTHAADKIIENDCLEIIGRYLPKEPVTLIQLKRAKLHLLKRGPNTDIFQNYCHEPK 121

Query: 8287 DVLRYGITNPDYCPRVDTQTAVIADTLHFMSTRQLTQLFLCNPNLCTVFATLVLPIEALH 8108
            DVLR+G+TNP  CP V+T  AVI+DTLHFMS++Q+  LF  NP L  ++ TLVLPIEAL+
Sbjct: 122  DVLRFGLTNPHVCPVVNTSCAVISDTLHFMSSQQVWTLFKRNPQLQRLYGTLVLPIEALN 181

Query: 8107 KLPSLFPEIYRLEYYKKHFAYMPGGHGGGAYVHSYETLKWLSTGQIGQSYTNPRLGTTDY 7928
            KLPSLFPEIY+LEYY  HFAYMPGGHGGGAY+HSY TLKWLST QIG          +++
Sbjct: 182  KLPSLFPEIYKLEYYDNHFAYMPGGHGGGAYIHSYGTLKWLSTAQIGTE--------SNH 233

Query: 7927 ISIEKIETKAAHHIMLITRRQAQTPWPLAPLWVFHPSDYVRLPPVFYPPEANVQNTYPHD 7748
            +SIEKIETK AHHIMLI RR+ + PWPL PLWVFH SDYVRLP +FYP EANVQ  YPH 
Sbjct: 234  LSIEKIETKGAHHIMLIQRRRPELPWPLPPLWVFHASDYVRLPEIFYPSEANVQRAYPHI 293

Query: 7747 LVKRMQAYCFSVKAVSLRDIFAKLRQVIETAELKRYSMADLIRLANYLLLITGMEQVSDY 7568
             +KR+Q YCFSVKAVSLRDIFAK+RQVI T EL R+S ADLIRLANYLL ITGM+Q SDY
Sbjct: 294  FIKRLQLYCFSVKAVSLRDIFAKIRQVIPTEELSRFSTADLIRLANYLLFITGMQQTSDY 353

Query: 7567 ECLLTKGWLAKLSCRIRTRVRQLFESLRGKTSYAALLSVTDVIPVPFTTNPCVRGCDGIS 7388
            +  L +  L KL   IR RVR+ F++L GK+SYAALL+VTDV PV FTT P  R   G  
Sbjct: 354  QSPLMESLLGKLCLSIRARVREFFQNLMGKSSYAALLTVTDVRPVYFTTKPIRRPICGQP 413

Query: 7387 WLPEPEEINRP-PPDEPG---PTLEDLEMMADLHNAQRL 7283
            W  E E  ++P  P   G   P+ +DL+++A+    +R+
Sbjct: 414  WFDETEMESKPETPTITGYLNPSPDDLDLLAEFEQHERV 452