BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00041538
         (496 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AVA17452.1| RNA-dependent RNA polymerase [Gigaspora margarita...    60   3e-07

>gb|AVA17452.1| RNA-dependent RNA polymerase [Gigaspora margarita mitovirus 4]
          Length = 1008

 Score = 59.7 bits (143), Expect = 3e-07
 Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
 Frame = +2

Query: 5    YVVLGDDVVIGDREVAETYYSLVTGRYKVPIKLAKSYISST-LVNFANQTYFNKTNISPV 181
            Y VLGDDVV+ D+EVA  Y  L++ ++ VPI L+KS +S+     F ++ + N+  +SP+
Sbjct: 659  YRVLGDDVVLADKEVATAYRELMS-KFGVPISLSKSLVSNNGFFQFVSEVFDNQIPLSPL 717

Query: 182  PFKELISMEGLAARFEFASRV-VRRWF----TETSVIRYLRVALSDHLFQRLRGALGRGE 346
              K   S     +R  FA    VR WF    T +     LR+  +   ++R    + +G 
Sbjct: 718  SLKADYSHNTAESRIMFAVNAGVRGWFDVDKTSSLSFSILRLVCNKDQYRREVERIEKGA 777

Query: 347  VFGPILPVLFALTLVGAPIAGWG 415
                   V+ AL ++   +  WG
Sbjct: 778  TSALSHRVISALCIMFPQLQRWG 800