BLASTX nr result
ID: Ophiopogon23_contig00038302
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon23_contig00038302
(538 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP46867.1| Retrovirus-related Pol polyprotein from transposo... 65 8e-21
gb|OMO73383.1| Integrase, catalytic core [Corchorus capsularis] 62 1e-19
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc... 73 2e-19
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 73 2e-19
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 73 2e-19
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group] 73 2e-19
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa] 73 2e-19
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 73 2e-19
dbj|BAH90873.1| Os01g0116166 [Oryza sativa Japonica Group] 72 3e-19
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 71 6e-19
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 72 1e-18
dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group] 72 1e-18
gb|KYP58493.1| Retrovirus-related Pol polyprotein from transposo... 62 1e-18
emb|CAJ86151.1| H0413E07.4 [Oryza sativa] 70 3e-18
emb|CAJ86192.1| H0306F03.15 [Oryza sativa] 70 3e-18
gb|KYP40337.1| Retrovirus-related Pol polyprotein from transposo... 61 6e-18
gb|KYP40338.1| Retrovirus-related Pol polyprotein from transposo... 61 6e-18
gb|KYP76436.1| Retrovirus-related Pol polyprotein from transposo... 61 8e-18
gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposo... 63 1e-17
gb|PKU72844.1| Retrovirus-related Pol polyprotein from transposo... 62 3e-17
>gb|KYP46867.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 253
Score = 64.7 bits (156), Expect(3) = 8e-21
Identities = 28/58 (48%), Positives = 40/58 (68%)
Frame = -3
Query: 188 LLVIYTWMWGTFADGIHWFAKYYVTFVDDFFRKVWMYFFKQKSEVFQKFKQ*KMMVEK 15
L +++ +WG H ++Y+VTF+DD+ RKVW+YF K K EVF +FK+ K MVEK
Sbjct: 163 LQYVHSDLWGPSPVQFHGRSRYFVTFIDDYSRKVWVYFLKSKDEVFGRFKEWKTMVEK 220
Score = 60.1 bits (144), Expect(3) = 8e-21
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Frame = -2
Query: 483 GGVKITKGSITILKRERKAKLYKMIGSIIVGDVLATIEKE---NNIKLWHIHLGHMSE*G 313
G + ++KG++ ++K + + +Y M+G+ G V + E +N KLWH LGHMSE G
Sbjct: 59 GHITVSKGALVVMKGKLQHGIYVMLGNSFQGTVSISHSIEQHVDNTKLWHCRLGHMSERG 118
Query: 312 H*VRNNKGVLPGIKYFKLGLCKFCI--KRRHHKVTLHLSSKQGLASHIHMDV 163
V + +G+L G KL C+ C+ K+R K + + ++H D+
Sbjct: 119 LVVLSKQGLLGGAVTGKLKFCESCVMGKQRRLKFNHGKHTSTEILQYVHSDL 170
Score = 23.1 bits (48), Expect(3) = 8e-21
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 538 LLSLGTLEAQGCKFSG 491
L+S+G L+ QG FSG
Sbjct: 41 LISIGALDKQGYSFSG 56
>gb|OMO73383.1| Integrase, catalytic core [Corchorus capsularis]
Length = 1212
Score = 62.4 bits (150), Expect(3) = 1e-19
Identities = 29/63 (46%), Positives = 40/63 (63%)
Frame = -3
Query: 203 VQNKGLLVIYTWMWGTFADGIHWFAKYYVTFVDDFFRKVWMYFFKQKSEVFQKFKQ*KMM 24
+ KGL+ WG H +Y+VTF+DD+ RKVW+YF K K EVF +FK+ K+M
Sbjct: 406 LSKKGLI-----RWGPAPVESHSRCRYFVTFIDDYSRKVWVYFLKTKDEVFDRFKEWKIM 460
Query: 23 VEK 15
+EK
Sbjct: 461 IEK 463
Score = 54.7 bits (130), Expect(3) = 1e-19
Identities = 26/70 (37%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Frame = -2
Query: 483 GGVKITKGSITILKRERKAKLYKMIGSIIVGDVLATI---EKENNIKLWHIHLGHMSE*G 313
G +K++KGS+TILK + + +Y +IG+ ++G+V + + + +LWH LGHMSE G
Sbjct: 343 GQIKVSKGSMTILKGKLQHGIYTLIGNSVIGEVAVSESLGDSNDRTELWHRRLGHMSEQG 402
Query: 312 H*VRNNKGVL 283
+ + KG++
Sbjct: 403 LSILSKKGLI 412
Score = 26.9 bits (58), Expect(3) = 1e-19
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -1
Query: 538 LLSLGTLEAQGCKFSGK 488
L+SLGTL+ QG K+SG+
Sbjct: 325 LISLGTLDKQGYKYSGE 341
>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1262
Score = 72.8 bits (177), Expect(2) = 2e-19
Identities = 41/113 (36%), Positives = 67/113 (59%), Gaps = 6/113 (5%)
Frame = -2
Query: 483 GGVKITKGSITILKRERK-AKLYKMIGSIIVGDVLATIEKENN---IKLWHIHLGHMSE* 316
G +K+TKGS+ ++K + K A LY + G+ I+G+V A + +N LWH+ LGHMSE
Sbjct: 402 GILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEI 461
Query: 315 GH*VRNNKGVLPGIKYFKLGLCKFCIKRRHHKVTLHLS--SKQGLASHIHMDV 163
G + +G+L G KL C+ CI +H +V + S + +G+ ++H D+
Sbjct: 462 GLAELSKRGLLDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 514
Score = 50.8 bits (120), Expect(2) = 2e-19
Identities = 23/55 (41%), Positives = 33/55 (60%)
Frame = -3
Query: 179 IYTWMWGTFADGIHWFAKYYVTFVDDFFRKVWMYFFKQKSEVFQKFKQ*KMMVEK 15
+++ +WG A+Y +T VDD+ RKVW YF K K + F FK+ K MVE+
Sbjct: 510 VHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVER 564
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 72.8 bits (177), Expect(2) = 2e-19
Identities = 41/113 (36%), Positives = 67/113 (59%), Gaps = 6/113 (5%)
Frame = -2
Query: 483 GGVKITKGSITILKRERK-AKLYKMIGSIIVGDVLATIEKENN---IKLWHIHLGHMSE* 316
G +K+TKGS+ ++K + K A LY + G+ I+G+V A + +N LWH+ LGHMSE
Sbjct: 296 GILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEI 355
Query: 315 GH*VRNNKGVLPGIKYFKLGLCKFCIKRRHHKVTLHLS--SKQGLASHIHMDV 163
G + +G+L G KL C+ CI +H +V + S + +G+ ++H D+
Sbjct: 356 GLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 408
Score = 50.8 bits (120), Expect(2) = 2e-19
Identities = 23/55 (41%), Positives = 33/55 (60%)
Frame = -3
Query: 179 IYTWMWGTFADGIHWFAKYYVTFVDDFFRKVWMYFFKQKSEVFQKFKQ*KMMVEK 15
+++ +WG A+Y +T VDD+ RKVW YF K K + F FK+ K MVE+
Sbjct: 404 VHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVER 458
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gb|AAM10749.1|AC112514_2 Putative retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 72.8 bits (177), Expect(2) = 2e-19
Identities = 41/113 (36%), Positives = 67/113 (59%), Gaps = 6/113 (5%)
Frame = -2
Query: 483 GGVKITKGSITILKRERK-AKLYKMIGSIIVGDVLATIEKENN---IKLWHIHLGHMSE* 316
G +K+TKGS+ ++K + K A LY + G+ I+G+V A + +N LWH+ LGHMSE
Sbjct: 348 GILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEI 407
Query: 315 GH*VRNNKGVLPGIKYFKLGLCKFCIKRRHHKVTLHLS--SKQGLASHIHMDV 163
G + +G+L G KL C+ CI +H +V + S + +G+ ++H D+
Sbjct: 408 GLAELSKRGLLDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 460
Score = 50.8 bits (120), Expect(2) = 2e-19
Identities = 23/55 (41%), Positives = 33/55 (60%)
Frame = -3
Query: 179 IYTWMWGTFADGIHWFAKYYVTFVDDFFRKVWMYFFKQKSEVFQKFKQ*KMMVEK 15
+++ +WG A+Y +T VDD+ RKVW YF K K + F FK+ K MVE+
Sbjct: 456 VHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVER 510
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 72.8 bits (177), Expect(2) = 2e-19
Identities = 41/113 (36%), Positives = 67/113 (59%), Gaps = 6/113 (5%)
Frame = -2
Query: 483 GGVKITKGSITILKRERK-AKLYKMIGSIIVGDVLATIEKENN---IKLWHIHLGHMSE* 316
G +K+TKGS+ ++K + K A LY + G+ I+G+V A + +N LWH+ LGHMSE
Sbjct: 219 GILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEI 278
Query: 315 GH*VRNNKGVLPGIKYFKLGLCKFCIKRRHHKVTLHLS--SKQGLASHIHMDV 163
G + +G+L G KL C+ CI +H +V + S + +G+ ++H D+
Sbjct: 279 GLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 331
Score = 50.8 bits (120), Expect(2) = 2e-19
Identities = 23/55 (41%), Positives = 33/55 (60%)
Frame = -3
Query: 179 IYTWMWGTFADGIHWFAKYYVTFVDDFFRKVWMYFFKQKSEVFQKFKQ*KMMVEK 15
+++ +WG A+Y +T VDD+ RKVW YF K K + F FK+ K MVE+
Sbjct: 327 VHSDLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVER 381
>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa]
Length = 944
Score = 72.8 bits (177), Expect(2) = 2e-19
Identities = 41/113 (36%), Positives = 67/113 (59%), Gaps = 6/113 (5%)
Frame = -2
Query: 483 GGVKITKGSITILKRERK-AKLYKMIGSIIVGDVLATIEKENN---IKLWHIHLGHMSE* 316
G +K+TKGS+ ++K + K A LY + G+ I+G+V A + +N LWH+ LGHMSE
Sbjct: 219 GILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEI 278
Query: 315 GH*VRNNKGVLPGIKYFKLGLCKFCIKRRHHKVTLHLS--SKQGLASHIHMDV 163
G + +G+L G KL C+ CI +H +V + S + +G+ ++H D+
Sbjct: 279 GLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 331
Score = 50.8 bits (120), Expect(2) = 2e-19
Identities = 23/55 (41%), Positives = 33/55 (60%)
Frame = -3
Query: 179 IYTWMWGTFADGIHWFAKYYVTFVDDFFRKVWMYFFKQKSEVFQKFKQ*KMMVEK 15
+++ +WG A+Y +T VDD+ RKVW YF K K + F FK+ K MVE+
Sbjct: 327 VHSDLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVER 381
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 72.8 bits (177), Expect(2) = 2e-19
Identities = 41/113 (36%), Positives = 67/113 (59%), Gaps = 6/113 (5%)
Frame = -2
Query: 483 GGVKITKGSITILKRERK-AKLYKMIGSIIVGDVLATIEKENN---IKLWHIHLGHMSE* 316
G +K+TKGS+ ++K + K A LY + G+ I+G+V A + +N LWH+ LGHMSE
Sbjct: 359 GILKVTKGSLVVMKVDIKSANLYHLRGTTILGNVAAVFDSLSNSDATNLWHMRLGHMSEI 418
Query: 315 GH*VRNNKGVLPGIKYFKLGLCKFCIKRRHHKVTLHLS--SKQGLASHIHMDV 163
G + +G+L G KL C+ CI +H +V + S + +G+ ++H D+
Sbjct: 419 GLAELSKRGLLDGQSIRKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 471
Score = 50.4 bits (119), Expect(2) = 2e-19
Identities = 23/55 (41%), Positives = 33/55 (60%)
Frame = -3
Query: 179 IYTWMWGTFADGIHWFAKYYVTFVDDFFRKVWMYFFKQKSEVFQKFKQ*KMMVEK 15
+++ +WG A+Y +T VDD+ RKVW YF K K + F FK+ K MVE+
Sbjct: 467 VHSDLWGPAHKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEWKTMVER 521
>dbj|BAH90873.1| Os01g0116166 [Oryza sativa Japonica Group]
Length = 778
Score = 72.0 bits (175), Expect(2) = 3e-19
Identities = 41/113 (36%), Positives = 67/113 (59%), Gaps = 6/113 (5%)
Frame = -2
Query: 483 GGVKITKGSITILKRERK-AKLYKMIGSIIVGDVLATIEKENN---IKLWHIHLGHMSE* 316
G +K+TKGS+ ++K + K A LY + G+ I+G+V A + +N LWH+ LGHMSE
Sbjct: 353 GILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEI 412
Query: 315 GH*VRNNKGVLPGIKYFKLGLCKFCIKRRHHKVTLHLS--SKQGLASHIHMDV 163
G + +G+L G KL C+ CI +H +V + S + +G+ ++H D+
Sbjct: 413 GLAELSKRGLLYGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 465
Score = 50.8 bits (120), Expect(2) = 3e-19
Identities = 23/55 (41%), Positives = 33/55 (60%)
Frame = -3
Query: 179 IYTWMWGTFADGIHWFAKYYVTFVDDFFRKVWMYFFKQKSEVFQKFKQ*KMMVEK 15
+++ +WG A+Y +T VDD+ RKVW YF K K + F FK+ K MVE+
Sbjct: 461 VHSDLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVER 515
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 70.9 bits (172), Expect(2) = 6e-19
Identities = 40/113 (35%), Positives = 65/113 (57%), Gaps = 6/113 (5%)
Frame = -2
Query: 483 GGVKITKGSITILKRERK-AKLYKMIGSIIVGDVLATIEKENN---IKLWHIHLGHMSE* 316
G +K+TKGS+ ++K K A LY + G+ I+G+V + +N LWH+ LGHMSE
Sbjct: 387 GILKVTKGSLVVMKASIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEI 446
Query: 315 GH*VRNNKGVLPGIKYFKLGLCKFCIKRRHHKVTLHLS--SKQGLASHIHMDV 163
G + +G+L G KL C+ CI +H +V + S + +G+ ++H D+
Sbjct: 447 GLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 499
Score = 50.8 bits (120), Expect(2) = 6e-19
Identities = 23/55 (41%), Positives = 33/55 (60%)
Frame = -3
Query: 179 IYTWMWGTFADGIHWFAKYYVTFVDDFFRKVWMYFFKQKSEVFQKFKQ*KMMVEK 15
+++ +WG A+Y +T VDD+ RKVW YF K K + F FK+ K MVE+
Sbjct: 495 VHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFNVFKEWKTMVER 549
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 2340
Score = 71.6 bits (174), Expect(2) = 1e-18
Identities = 40/113 (35%), Positives = 67/113 (59%), Gaps = 6/113 (5%)
Frame = -2
Query: 483 GGVKITKGSITILKRERK-AKLYKMIGSIIVGDVLATIEKENN---IKLWHIHLGHMSE* 316
G +K+TKGS+ ++K + K A LY + G+ I+G+V A + +N LWH+ LGHM+E
Sbjct: 594 GILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEI 653
Query: 315 GH*VRNNKGVLPGIKYFKLGLCKFCIKRRHHKVTLHLS--SKQGLASHIHMDV 163
G + +G+L G KL C+ CI +H +V + S + +G+ ++H D+
Sbjct: 654 GLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 706
Score = 49.3 bits (116), Expect(2) = 1e-18
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = -3
Query: 179 IYTWMWGTFADGIHWFAKYYVTFVDDFFRKVWMYFFKQKSEVFQKFKQ*KMMVEK 15
+++ +WG +Y +T VDD+ RKVW YF K K + F FK+ K MVE+
Sbjct: 702 VHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVER 756
>dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]
Length = 1601
Score = 71.6 bits (174), Expect(2) = 1e-18
Identities = 40/113 (35%), Positives = 67/113 (59%), Gaps = 6/113 (5%)
Frame = -2
Query: 483 GGVKITKGSITILKRERK-AKLYKMIGSIIVGDVLATIEKENN---IKLWHIHLGHMSE* 316
G +K+TKGS+ ++K + K A LY + G+ I+G+V A + +N LWH+ LGHM+E
Sbjct: 387 GILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEI 446
Query: 315 GH*VRNNKGVLPGIKYFKLGLCKFCIKRRHHKVTLHLS--SKQGLASHIHMDV 163
G + +G+L G KL C+ CI +H +V + S + +G+ ++H D+
Sbjct: 447 GLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 499
Score = 49.3 bits (116), Expect(2) = 1e-18
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = -3
Query: 179 IYTWMWGTFADGIHWFAKYYVTFVDDFFRKVWMYFFKQKSEVFQKFKQ*KMMVEK 15
+++ +WG +Y +T VDD+ RKVW YF K K + F FK+ K MVE+
Sbjct: 495 VHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVER 549
>gb|KYP58493.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 313
Score = 61.6 bits (148), Expect(2) = 1e-18
Identities = 27/51 (52%), Positives = 35/51 (68%)
Frame = -3
Query: 167 MWGTFADGIHWFAKYYVTFVDDFFRKVWMYFFKQKSEVFQKFKQ*KMMVEK 15
+WG H ++Y+VTF+DD+ RKVW+YF K K EVF FK+ K MVEK
Sbjct: 195 LWGPSPVQSHGRSRYFVTFIDDYSRKVWVYFLKSKDEVFGHFKEWKTMVEK 245
Score = 59.3 bits (142), Expect(2) = 1e-18
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Frame = -2
Query: 483 GGVKITKGSITILKRERKAKLYKMIGSIIVGDVLATIEKE---NNIKLWHIHLGHMSE*G 313
G + ++KG++ ++K + + +Y M+G+ G V + E +N KLWH LGHMSE G
Sbjct: 84 GHITVSKGALIVMKGKLQHGIYVMLGNSFQGTVSISHSLEQHVDNTKLWHCRLGHMSERG 143
Query: 312 H*VRNNKGVLPGIKYFKLGLCKFCI--KRRHHKVTLHLSSKQGLASHIHMDV 163
V + +G+L G KL C+ C+ K+R K + + + + H D+
Sbjct: 144 LAVLSKQGLLGGAVTGKLEFCESCVMGKQRRLKFSHGKHTSTEILQYFHSDL 195
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa]
Length = 1205
Score = 70.5 bits (171), Expect(2) = 3e-18
Identities = 40/113 (35%), Positives = 66/113 (58%), Gaps = 6/113 (5%)
Frame = -2
Query: 483 GGVKITKGSITILKRERK-AKLYKMIGSIIVGDVLATIEKENN---IKLWHIHLGHMSE* 316
G +K+TKGS+ ++K + K A LY + G+ I+G+V + +N LWH+ LGHMSE
Sbjct: 372 GILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEI 431
Query: 315 GH*VRNNKGVLPGIKYFKLGLCKFCIKRRHHKVTLHLS--SKQGLASHIHMDV 163
G + +G+L G KL C+ CI +H +V + S + +G+ ++H D+
Sbjct: 432 GLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 484
Score = 48.9 bits (115), Expect(2) = 3e-18
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = -3
Query: 179 IYTWMWGTFADGIHWFAKYYVTFVDDFFRKVWMYFFKQKSEVFQKFKQ*KMMVEK 15
+++ +WG A+Y +T V+D+ RKVW YF K K + F FK+ K MVE+
Sbjct: 480 VHSDLWGPARKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVER 534
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa]
Length = 1037
Score = 70.5 bits (171), Expect(2) = 3e-18
Identities = 40/113 (35%), Positives = 66/113 (58%), Gaps = 6/113 (5%)
Frame = -2
Query: 483 GGVKITKGSITILKRERK-AKLYKMIGSIIVGDVLATIEKENN---IKLWHIHLGHMSE* 316
G +K+TKGS+ ++K + K A LY + G+ I+G+V + +N LWH+ LGHMSE
Sbjct: 204 GILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEI 263
Query: 315 GH*VRNNKGVLPGIKYFKLGLCKFCIKRRHHKVTLHLS--SKQGLASHIHMDV 163
G + +G+L G KL C+ CI +H +V + S + +G+ ++H D+
Sbjct: 264 GLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 316
Score = 48.9 bits (115), Expect(2) = 3e-18
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = -3
Query: 179 IYTWMWGTFADGIHWFAKYYVTFVDDFFRKVWMYFFKQKSEVFQKFKQ*KMMVEK 15
+++ +WG A+Y +T V+D+ RKVW YF K K + F FK+ K MVE+
Sbjct: 312 VHSDLWGPARKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVER 366
>gb|KYP40337.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1269
Score = 61.2 bits (147), Expect(2) = 6e-18
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Frame = -2
Query: 474 KITKGSITILKRERKAKLYKMIGSIIVGDVLATIEKENNIKLWHIHLGHMSE*GH*VRNN 295
KI+KG++TI + ++ LYK + L T+ +N LWH LGHMSE G + ++
Sbjct: 353 KISKGAMTIARGKKSGTLYKTTEACH----LITVAANDNPNLWHQRLGHMSEKGMKIMHS 408
Query: 294 KGVLPGIKYFKLGLCKFCIKRRHHKVTLH---LSSKQGLASHIHMDV 163
KG LPG++ ++ +C+ CI + +V+ + K+ +H DV
Sbjct: 409 KGKLPGLQSMEIEMCEDCIFGKQKRVSFQKGGRTPKKERLELVHSDV 455
Score = 57.0 bits (136), Expect(2) = 6e-18
Identities = 27/57 (47%), Positives = 37/57 (64%)
Frame = -3
Query: 188 LLVIYTWMWGTFADGIHWFAKYYVTFVDDFFRKVWMYFFKQKSEVFQKFKQ*KMMVE 18
L ++++ +WG +Y+VTF+DD RKVW+YF K KSEVF+ FK K MVE
Sbjct: 448 LELVHSDVWGPTTVSSISGKQYFVTFIDDHSRKVWVYFLKHKSEVFEAFKMWKAMVE 504
>gb|KYP40338.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 864
Score = 61.2 bits (147), Expect(2) = 6e-18
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Frame = -2
Query: 474 KITKGSITILKRERKAKLYKMIGSIIVGDVLATIEKENNIKLWHIHLGHMSE*GH*VRNN 295
KI+KG++TI + ++ LYK + L T+ +N LWH LGHMSE G + ++
Sbjct: 353 KISKGAMTIARGKKSGTLYKTTEACH----LITVAANDNPNLWHQRLGHMSEKGMKIMHS 408
Query: 294 KGVLPGIKYFKLGLCKFCIKRRHHKVTLH---LSSKQGLASHIHMDV 163
KG LPG++ ++ +C+ CI + +V+ + K+ +H DV
Sbjct: 409 KGKLPGLQSMEIEMCEDCIFGKQKRVSFQKGGRTPKKERLELVHSDV 455
Score = 57.0 bits (136), Expect(2) = 6e-18
Identities = 27/57 (47%), Positives = 37/57 (64%)
Frame = -3
Query: 188 LLVIYTWMWGTFADGIHWFAKYYVTFVDDFFRKVWMYFFKQKSEVFQKFKQ*KMMVE 18
L ++++ +WG +Y+VTF+DD RKVW+YF K KSEVF+ FK K MVE
Sbjct: 448 LELVHSDVWGPTTVSSISGKQYFVTFIDDHSRKVWVYFLKHKSEVFEAFKMWKAMVE 504
>gb|KYP76436.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 760
Score = 60.8 bits (146), Expect(2) = 8e-18
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Frame = -2
Query: 474 KITKGSITILKRERKAKLYKMIGSIIVGDVLATIEKENNIKLWHIHLGHMSE*GH*VRNN 295
KI+KG++TI + ++ LYK + L T+ +N LWH LGHMSE G + ++
Sbjct: 330 KISKGAMTIARGKKSGTLYKTTEACH----LITVAANDNPNLWHQRLGHMSEKGMKIMHS 385
Query: 294 KGVLPGIKYFKLGLCKFCIKRRHHKVTLH---LSSKQGLASHIHMDV 163
KG LPG++ ++ +C+ CI + +V+ + K+ +H DV
Sbjct: 386 KGKLPGLQSVEIEMCEDCIFGKQKRVSFQKGGRTPKKERLELVHSDV 432
Score = 57.0 bits (136), Expect(2) = 8e-18
Identities = 27/57 (47%), Positives = 37/57 (64%)
Frame = -3
Query: 188 LLVIYTWMWGTFADGIHWFAKYYVTFVDDFFRKVWMYFFKQKSEVFQKFKQ*KMMVE 18
L ++++ +WG +Y+VTF+DD RKVW+YF K KSEVF+ FK K MVE
Sbjct: 425 LELVHSDVWGPTTVSSISGKQYFVTFIDDHSRKVWVYFLKHKSEVFEAFKMWKAMVE 481
>gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 634
Score = 62.8 bits (151), Expect(2) = 1e-17
Identities = 26/54 (48%), Positives = 40/54 (74%)
Frame = -3
Query: 179 IYTWMWGTFADGIHWFAKYYVTFVDDFFRKVWMYFFKQKSEVFQKFKQ*KMMVE 18
+++ +WG H A+Y+++ VDDF RKVW+YF KQK+EVF +FK+ K++VE
Sbjct: 141 VHSDLWGPSRTESHGGARYFLSIVDDFSRKVWVYFLKQKNEVFDRFKEWKVLVE 194
Score = 54.7 bits (130), Expect(2) = 1e-17
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Frame = -2
Query: 483 GGVKITKGSITILKRERKAKLY-KMIG-------SIIVGDVLATIEKENNIKLWHIHLGH 328
G +++ KGS+ ILK RK LY ++G S ++G ATI + KLWH LGH
Sbjct: 29 GSLRVFKGSLVILKGVRKNWLYYSLVGQTVVARSSNVIGSSNATITSDVATKLWHHRLGH 88
Query: 327 MSE*GH*VRNNKGVLPGIKYFKLGLCKFCI--KRRHHKVTLHLSSKQGLASHIHMDV 163
+S+ G +GV K L C+ C+ K K + S G+ ++H D+
Sbjct: 89 VSQRGLDELAKQGVFGRDKIEPLEFCEHCVMGKASRLKFSTSTHSSGGVLDYVHSDL 145
>gb|PKU72844.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 993
Score = 62.0 bits (149), Expect(2) = 3e-17
Identities = 33/110 (30%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Frame = -2
Query: 483 GGVKITKGSITILKRERKAKLYKMIGSIIVGDVLATIEKE-NNIKLWHIHLGHMSE*GH* 307
G ++I+KG++ I+K ++ LY + G+ +VG+ T ++ + KLWH LGH+S+ G
Sbjct: 317 GLLRISKGALVIMKGIKRNGLYVLQGATLVGETHVTAKQNLDKTKLWHQRLGHLSDRGLI 376
Query: 306 VRNNKGVLPGIKYFKLGLCKFCIKRRHHKVTLHLSS--KQGLASHIHMDV 163
+G+ K+ C+ CI + H+++ LS+ +G+ +IH D+
Sbjct: 377 ELQKQGLFGNDSIAKIDFCESCIIGKSHRLSFKLSTHRAEGILDYIHSDL 426
Score = 53.9 bits (128), Expect(2) = 3e-17
Identities = 23/59 (38%), Positives = 36/59 (61%)
Frame = -3
Query: 179 IYTWMWGTFADGIHWFAKYYVTFVDDFFRKVWMYFFKQKSEVFQKFKQ*KMMVEK*KRQ 3
I++ +WG H +Y+++F+DD+ RKVW++ K K E F KF + K MVE K +
Sbjct: 422 IHSDLWGPARVATHGGNRYFLSFIDDYSRKVWIFLLKSKDETFSKFLEWKSMVENQKNR 480