BLASTX nr result

ID: Ophiopogon23_contig00038229 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00038229
         (404 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|OMO57353.1| hypothetical protein COLO4_35424 [Corchorus olito...    57   8e-07
dbj|GAU33049.1| hypothetical protein TSUD_152040 [Trifolium subt...    55   2e-06
dbj|GAU51714.1| hypothetical protein TSUD_265630 [Trifolium subt...    54   7e-06

>gb|OMO57353.1| hypothetical protein COLO4_35424 [Corchorus olitorius]
          Length = 309

 Score = 57.0 bits (136), Expect = 8e-07
 Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
 Frame = -1

Query: 224 DMILGMKELLPSLFSLSYNTDGIVSDMGYWINNEWKWVLQFRRNLSGGLVQQLDMLLEIL 45
           DMIL  K L P +FSL+ N +G +S+ G WI+++W W +  R NL G    Q D LL +L
Sbjct: 53  DMIL--KVLFPRIFSLAVNKNGKISEYGEWIDDKWVWRIHLRLNLFGWEQNQWDELLVLL 110

Query: 44  ETCPLSFT-EDVRIW 3
           E   LS   +D  IW
Sbjct: 111 ENVCLSLDFKDKLIW 125


>dbj|GAU33049.1| hypothetical protein TSUD_152040 [Trifolium subterraneum]
          Length = 189

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 27/69 (39%), Positives = 40/69 (57%)
 Frame = -1

Query: 209 MKELLPSLFSLSYNTDGIVSDMGYWINNEWKWVLQFRRNLSGGLVQQLDMLLEILETCPL 30
           +K    SLF LS     +V +MGYW+N EW W+ ++RR+LS   +  L+ LL +++T PL
Sbjct: 75  LKIQFQSLFQLSDQQLDLVGEMGYWLNLEWHWMFRWRRDLSVLEIGLLEALLSVVQTTPL 134

Query: 29  SFTEDVRIW 3
               D   W
Sbjct: 135 LGVVDSWSW 143


>dbj|GAU51714.1| hypothetical protein TSUD_265630 [Trifolium subterraneum]
          Length = 232

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 25/64 (39%), Positives = 36/64 (56%)
 Frame = -1

Query: 194 PSLFSLSYNTDGIVSDMGYWINNEWKWVLQFRRNLSGGLVQQLDMLLEILETCPLSFTED 15
           P LF +S   D  V +MG W+N +W+W L +RR L    V  LD LL +L +  +S   D
Sbjct: 76  PRLFQVSQQRDSKVGEMGNWVNGDWRWDLSWRRELFVWEVGLLDDLLRVLNSYHISDALD 135

Query: 14  VRIW 3
           + +W
Sbjct: 136 ICVW 139


Top