BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00034229
         (1203 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020265555.1| RNA pseudouridine synthase 4, mitochondrial ...   552   0.0  
ref|XP_008812838.1| PREDICTED: RNA pseudouridine synthase 4, mit...   455   e-155
ref|XP_010943215.1| PREDICTED: RNA pseudouridine synthase 4, mit...   450   e-153
ref|XP_009396599.1| PREDICTED: RNA pseudouridine synthase 4, mit...   446   e-151
ref|XP_010943216.1| PREDICTED: RNA pseudouridine synthase 4, mit...   441   e-149
ref|XP_020102939.1| RNA pseudouridine synthase 4, mitochondrial-...   439   e-149
gb|OAY82176.1| RNA pseudouridine synthase 4, mitochondrial [Anan...   439   e-149
ref|XP_020685526.1| RNA pseudouridine synthase 4, mitochondrial-...   433   e-146
ref|XP_018827853.1| PREDICTED: RNA pseudouridine synthase 4, mit...   431   e-145
ref|XP_020102938.1| RNA pseudouridine synthase 4, mitochondrial-...   430   e-145
ref|XP_002282614.1| PREDICTED: RNA pseudouridine synthase 4, mit...   426   e-143
ref|XP_010271251.1| PREDICTED: RNA pseudouridine synthase 4, mit...   426   e-143
ref|XP_022749157.1| RNA pseudouridine synthase 4, mitochondrial ...   426   e-143
ref|XP_015892750.1| PREDICTED: RNA pseudouridine synthase 4, mit...   423   e-142
gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theob...   422   e-142
ref|XP_011624446.2| RNA pseudouridine synthase 4, mitochondrial ...   421   e-142
dbj|GAV62308.1| PseudoU_synth_2 domain-containing protein [Cepha...   420   e-141
ref|XP_007199810.1| RNA pseudouridine synthase 4, mitochondrial ...   420   e-141
ref|XP_021816055.1| RNA pseudouridine synthase 4, mitochondrial ...   420   e-141
ref|XP_019225818.1| PREDICTED: RNA pseudouridine synthase 4, mit...   419   e-141

>ref|XP_020265555.1| RNA pseudouridine synthase 4, mitochondrial [Asparagus officinalis]
 gb|ONK70293.1| uncharacterized protein A4U43_C05F32240 [Asparagus officinalis]
          Length = 453

 Score =  552 bits (1422), Expect = 0.0
 Identities = 280/369 (75%), Positives = 308/369 (83%), Gaps = 1/369 (0%)
 Frame = +2

Query: 2    RCCPHLPASLVQKLFRLRQVRKDLVESAGDCAEAEAKQNKPKRVSAKDTLVSGDIILLPI 181
            RCCP LP SLVQKLFRLRQVRK+L  S     E E KQ K KRVSAKDTL SGD+ILLPI
Sbjct: 87   RCCPQLPMSLVQKLFRLRQVRKELANSNQLFTEEEVKQKKIKRVSAKDTLDSGDVILLPI 146

Query: 182  TVQKLVTETKDCST-ETEIDFIRSLVLYKDPAIIVINKPPGMPVQGGVGIKHSMDVLGAM 358
            TVQ+LV ETKD S+ E E+ F+RSLVLYKDP IIV+NKPPG+PVQGGVGIK+S+D L AM
Sbjct: 147  TVQELVPETKDSSSNEDEVKFMRSLVLYKDPDIIVLNKPPGLPVQGGVGIKYSVDALAAM 206

Query: 359  SLKYDYSEPPRLVHRLDRESSGILVMGRTQTSASILHTIFREKTSGVGVNDIESIQRALQ 538
            +LKYDYSEPPRLVHRLDRESSG+LV+GRTQTSA+ILH+IFR+KTS V  ND+  +Q+ LQ
Sbjct: 207  ALKYDYSEPPRLVHRLDRESSGVLVLGRTQTSAAILHSIFRDKTSEVESNDVNDVQKVLQ 266

Query: 539  KKYWALVIGTPRLSKGRIPAPLAKIVLEDGKSDRITIARDESTPSQHALTEYKVIRSAHG 718
            KKYWALVIG PRL KG I APLAKIVLEDGKSDRITIARD STPSQHALTEYKVIRSA+G
Sbjct: 267  KKYWALVIGIPRLLKGLISAPLAKIVLEDGKSDRITIARDVSTPSQHALTEYKVIRSANG 326

Query: 719  YTWLELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKVEHHELPFG 898
            Y+WLEL PLTGRKHQLRVHCAEALGTPIVGDYKYGWKAHRNLEP+P +Q + EH  LPFG
Sbjct: 327  YSWLELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWKAHRNLEPVPSLQSEFEHEMLPFG 386

Query: 899  LESGGGSISDKQPRLHLHCREMILPNIATALQQXXXXXXXXXXXXXXXXXXFVAPVPSYM 1078
            LES GGSISDK+PR+HLHCREM LPNIA+A+QQ                   VAPVP YM
Sbjct: 387  LESQGGSISDKEPRMHLHCREMTLPNIASAMQQ--LESSTNLDLSKIDVLDLVAPVPWYM 444

Query: 1079 KESWEILNY 1105
            KESWEILNY
Sbjct: 445  KESWEILNY 453


>ref|XP_008812838.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Phoenix
            dactylifera]
          Length = 476

 Score =  455 bits (1170), Expect = e-155
 Identities = 241/374 (64%), Positives = 286/374 (76%), Gaps = 7/374 (1%)
 Frame = +2

Query: 2    RCCPHLPASLVQKLFRLRQVRKDLVESAGDCAEAEAKQNKPKRVSAKDTLVSGDIILLPI 181
            RCC HLP SLVQKLFRLRQVR+DL ++ G   ++ + Q + +RVSAKD ++ GD+ILLP+
Sbjct: 102  RCCSHLPMSLVQKLFRLRQVRRDLTKN-GSNMDSHSAQQQLRRVSAKDVMMPGDVILLPV 160

Query: 182  TVQKLVTETKDCS-TETEIDFIRSLVLYKDPAIIVINKPPGMPVQGGVGIKHSMDVLGAM 358
            TVQ + T+  D S +E EI FI SL LYKD AII +NKPPGMPVQGGVGIK+SMD L A 
Sbjct: 161  TVQNVATKKYDYSESEKEISFIHSLELYKDSAIIAVNKPPGMPVQGGVGIKYSMDALAAK 220

Query: 359  SLKYDYSEPPRLVHRLDRESSGILVMGRTQTSASILHTIFREKTSGVGVNDIESIQRALQ 538
            S KYD+ E PRLVHRLDR+SSG+LV+GRTQTSA ILH+IFREKTSG   +DI++ +R LQ
Sbjct: 221  SFKYDFPESPRLVHRLDRDSSGVLVLGRTQTSALILHSIFREKTSGALSDDIKTTRRTLQ 280

Query: 539  KKYWALVIGTPRLSKGRIPAPLAKIVLEDGKSDRITIAR-DESTPSQHALTEYKVIR-SA 712
            +KY ALVIGTP+ SKG I APLAKIVLEDGKS+RITI    +ST S HALTEY+VIR SA
Sbjct: 281  RKYLALVIGTPKHSKGLISAPLAKIVLEDGKSERITIVMGTKSTSSHHALTEYRVIRSSA 340

Query: 713  HGYTWLELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKVEHHEL- 889
            HG+TWLEL PLTGRKHQLRVHCAEALGTPIVGDYKYGW AHR  EPMP  +   E  +L 
Sbjct: 341  HGFTWLELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWYAHRKWEPMPWPESMSEDEKLP 400

Query: 890  ---PFGLESGGGSISDKQPRLHLHCREMILPNIATALQQXXXXXXXXXXXXXXXXXXFVA 1060
               PFGL+  GGSI++KQP LHLHC++MILPNI+ AL Q                   VA
Sbjct: 401  KKRPFGLDLDGGSIAEKQPYLHLHCKQMILPNISAALCQ-LQSSAVDHDFSKLEKINLVA 459

Query: 1061 PVPSYMKESWEILN 1102
            P+P +M+ESW+IL+
Sbjct: 460  PLPLHMQESWDILS 473


>ref|XP_010943215.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
            [Elaeis guineensis]
          Length = 478

 Score =  450 bits (1158), Expect = e-153
 Identities = 241/375 (64%), Positives = 282/375 (75%), Gaps = 8/375 (2%)
 Frame = +2

Query: 2    RCCPHLPASLVQKLFRLRQVRKDLVESAGDCAEAEAKQNKPKRVSAKDTLVSGDIILLPI 181
            RCCPHLP SLVQKLFRLRQVR+DL ++ G   +    Q + +RVSAKD ++ GD+ILLP+
Sbjct: 102  RCCPHLPMSLVQKLFRLRQVRRDLTKN-GSHMDGYYGQQQLRRVSAKDVMMPGDVILLPV 160

Query: 182  TVQKLVTETKDCS-TETEIDFIRSLVLYKDPAIIVINKPPGMPVQGGVGIKHSMDVLGAM 358
            TVQ + T+  D S +E EI FIRSL LYKD AII +NKPPGMPVQGGVGIK+SMD L A 
Sbjct: 161  TVQNVATKKYDYSESEEEISFIRSLELYKDSAIIAVNKPPGMPVQGGVGIKYSMDALAAK 220

Query: 359  SLKYDYSEPPRLVHRLDRESSGILVMGRTQTSASILHTIFREKTSGVGVNDIESIQRALQ 538
            S KYDY E PRLVHRLDR+SSG+LV+GRTQTSA +LH+IFREKTSG   +DI++  RALQ
Sbjct: 221  SFKYDYPESPRLVHRLDRDSSGVLVLGRTQTSALVLHSIFREKTSGALSDDIKTTCRALQ 280

Query: 539  KKYWALVIGTPRLSKGRIPAPLAKIVLEDGKSDRITIARDEST-PSQHALTEYKVIR-SA 712
            +KY ALVIGTP+  KG I APL KIVLEDGKS+RITI +D  T  S HALTEY+VIR SA
Sbjct: 281  RKYLALVIGTPKRWKGLISAPLTKIVLEDGKSERITIVKDTKTASSHHALTEYQVIRSSA 340

Query: 713  HGYTWLELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKVEHHEL- 889
            HG+TWLEL PLTGRKHQLRVH AEALGTPIVGDYKYGW AHR  EPMP  +   E  +L 
Sbjct: 341  HGFTWLELCPLTGRKHQLRVHLAEALGTPIVGDYKYGWYAHRKWEPMPWPESMSEDEKLP 400

Query: 890  ----PFGLESGGGSISDKQPRLHLHCREMILPNIATALQQXXXXXXXXXXXXXXXXXXFV 1057
                PFGLE  GGSI++KQP LHLHC++MILPNI+ AL Q                   V
Sbjct: 401  KNKPPFGLELDGGSIAEKQPFLHLHCKQMILPNISAALWQ-LQSSSVDHDFLELEKLNLV 459

Query: 1058 APVPSYMKESWEILN 1102
            AP+P +M+ SW+IL+
Sbjct: 460  APLPLHMRVSWDILS 474


>ref|XP_009396599.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Musa
            acuminata subsp. malaccensis]
          Length = 469

 Score =  446 bits (1147), Expect = e-151
 Identities = 239/378 (63%), Positives = 279/378 (73%), Gaps = 11/378 (2%)
 Frame = +2

Query: 2    RCCPHLPASLVQKLFRLRQVRKDLVESA---GDCAEAEAKQNKPKRVSAKDTLVSGDIIL 172
            RCCPHLP SLV KLFRLRQVR+D        G+   AE  Q + +RVS KD ++ G++I 
Sbjct: 93   RCCPHLPMSLVHKLFRLRQVRRDQTAQVVYNGNATPAE--QGRLRRVSVKDAMMPGEVIF 150

Query: 173  LPITVQKLVTETKDCS--TETEIDFIRSLVLYKDPAIIVINKPPGMPVQGGVGIKHSMDV 346
            LP++VQ L TE    S   + EI F+RSL LYKD AIIV+NKPPGMPVQGGVGI++SMD 
Sbjct: 151  LPVSVQNLTTEGSYRSKYNDVEISFVRSLELYKDEAIIVVNKPPGMPVQGGVGIRYSMDA 210

Query: 347  LGAMSLKYDYSEPPRLVHRLDRESSGILVMGRTQTSASILHTIFREKTSGVGVNDIESIQ 526
            L A  LKY+ SEPPRLVHRLDR+SSG+LV+GRTQTSA+ILH++FREKTSG   +DI   Q
Sbjct: 211  LAANCLKYECSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSLFREKTSGALADDINVTQ 270

Query: 527  RALQKKYWALVIGTPRLSKGRIPAPLAKIVLEDGKSDRITIARD-ESTPSQHALTEYKVI 703
            R LQ+KY ALVIGTPR SKG I APLAKIVLEDGKS+RI IA D +S  SQHALTEYKVI
Sbjct: 271  RPLQRKYLALVIGTPRHSKGLISAPLAKIVLEDGKSERIIIADDGKSASSQHALTEYKVI 330

Query: 704  RSAHGYTWLELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQ-----P 868
            RS+H YTWLEL PLTGRKHQLRVHCAE LGTPIVGD+KYG  AHR  EPM   +      
Sbjct: 331  RSSHDYTWLELFPLTGRKHQLRVHCAEVLGTPIVGDHKYGRHAHRKWEPMRLPESIIKGE 390

Query: 869  KVEHHELPFGLESGGGSISDKQPRLHLHCREMILPNIATALQQXXXXXXXXXXXXXXXXX 1048
            K+   +LPFGLE  GGSIS+K P LHLHC++M+LPNI+ ALQQ                 
Sbjct: 391  KIPKEKLPFGLELDGGSISEKLPGLHLHCKQMVLPNISVALQQ--LQSSTDHDFSKVEKL 448

Query: 1049 XFVAPVPSYMKESWEILN 1102
              VAP+PS+M+ SWEIL+
Sbjct: 449  NLVAPLPSHMQRSWEILS 466


>ref|XP_010943216.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X2
            [Elaeis guineensis]
          Length = 475

 Score =  441 bits (1135), Expect = e-149
 Identities = 240/375 (64%), Positives = 281/375 (74%), Gaps = 8/375 (2%)
 Frame = +2

Query: 2    RCCPHLPASLVQKLFRLRQVRKDLVESAGDCAEAEAKQNKPKRVSAKDTLVSGDIILLPI 181
            RCCPHLP SLVQKLFRLRQVR+DL ++ G   +    Q + +RVSAKD ++ GD+ILLP+
Sbjct: 102  RCCPHLPMSLVQKLFRLRQVRRDLTKN-GSHMDGYYGQQQLRRVSAKDVMMPGDVILLPV 160

Query: 182  TVQKLVTETKDCS-TETEIDFIRSLVLYKDPAIIVINKPPGMPVQGGVGIKHSMDVLGAM 358
            TVQ + T+  D S +E EI FIRSL LYKD AII +NKPPGMPVQGGVGIK+SMD L A 
Sbjct: 161  TVQNVATKKYDYSESEEEISFIRSLELYKDSAIIAVNKPPGMPVQGGVGIKYSMDALAAK 220

Query: 359  SLKYDYSEPPRLVHRLDRESSGILVMGRTQTSASILHTIFREKTSGVGVNDIESIQRALQ 538
            S KYDY E PRLVHRLDR+SSG+LV+GRTQTSA +LH+IFREKTSG  ++D  +  RALQ
Sbjct: 221  SFKYDYPESPRLVHRLDRDSSGVLVLGRTQTSALVLHSIFREKTSG-ALSD--TTCRALQ 277

Query: 539  KKYWALVIGTPRLSKGRIPAPLAKIVLEDGKSDRITIARDEST-PSQHALTEYKVIR-SA 712
            +KY ALVIGTP+  KG I APL KIVLEDGKS+RITI +D  T  S HALTEY+VIR SA
Sbjct: 278  RKYLALVIGTPKRWKGLISAPLTKIVLEDGKSERITIVKDTKTASSHHALTEYQVIRSSA 337

Query: 713  HGYTWLELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKVEHHEL- 889
            HG+TWLEL PLTGRKHQLRVH AEALGTPIVGDYKYGW AHR  EPMP  +   E  +L 
Sbjct: 338  HGFTWLELCPLTGRKHQLRVHLAEALGTPIVGDYKYGWYAHRKWEPMPWPESMSEDEKLP 397

Query: 890  ----PFGLESGGGSISDKQPRLHLHCREMILPNIATALQQXXXXXXXXXXXXXXXXXXFV 1057
                PFGLE  GGSI++KQP LHLHC++MILPNI+ AL Q                   V
Sbjct: 398  KNKPPFGLELDGGSIAEKQPFLHLHCKQMILPNISAALWQ-LQSSSVDHDFLELEKLNLV 456

Query: 1058 APVPSYMKESWEILN 1102
            AP+P +M+ SW+IL+
Sbjct: 457  APLPLHMRVSWDILS 471


>ref|XP_020102939.1| RNA pseudouridine synthase 4, mitochondrial-like isoform X6 [Ananas
            comosus]
          Length = 477

 Score =  439 bits (1130), Expect = e-149
 Identities = 222/374 (59%), Positives = 283/374 (75%), Gaps = 7/374 (1%)
 Frame = +2

Query: 2    RCCPHLPASLVQKLFRLRQVRKDLVESAGDCAEAEAKQNKPKRVSAKDTLVSGDIILLPI 181
            RCCP LPA+LV KLFRLRQVRK++  S     ++ A++ + KRVSAK+ ++ GD+ILLP 
Sbjct: 103  RCCPDLPATLVHKLFRLRQVRKNVASSTISYMDSHAEKMQSKRVSAKNAMMPGDVILLPA 162

Query: 182  TVQK-LVTETKDCSTETEIDFIRSLVLYKDPAIIVINKPPGMPVQGGVGIKHSMDVLGAM 358
            TVQK +V +  D S E ++ ++RS+ LY+D  IIV+NKPP MPVQGG+GIK+S+D L ++
Sbjct: 163  TVQKSIVGKFDDASGEDDMKYMRSIELYRDTTIIVLNKPPSMPVQGGIGIKYSIDALASI 222

Query: 359  SLKYDYSEPPRLVHRLDRESSGILVMGRTQTSASILHTIFREKTSGVGVNDIESIQRALQ 538
            SLKY+Y+E PRLVHRLDR+SSG+LV+ R Q  ASILH++FREKT+G   NDI+S  R LQ
Sbjct: 223  SLKYEYAESPRLVHRLDRDSSGVLVLARNQFCASILHSLFREKTTGASFNDIKSASRVLQ 282

Query: 539  KKYWALVIGTPRLSKGRIPAPLAKIVLEDGKSDRITIARD-ESTPSQHALTEYKVIRS-A 712
            +KY ALVIG PR SKG I APLAK++ EDGK++RITIA D +S  +QHALTEYKVI S  
Sbjct: 283  RKYLALVIGIPRHSKGLISAPLAKVIQEDGKAERITIADDMKSASAQHALTEYKVIESFP 342

Query: 713  HGYTWLELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQ----PKVEH 880
            HGYTWLEL PLTGRKHQLRVHCAE L TPIVGDYKYGWK+HR  +P+P        K   
Sbjct: 343  HGYTWLELCPLTGRKHQLRVHCAEVLRTPIVGDYKYGWKSHRRWKPVPFPPTIDVEKFPR 402

Query: 881  HELPFGLESGGGSISDKQPRLHLHCREMILPNIATALQQXXXXXXXXXXXXXXXXXXFVA 1060
            ++LPFGL+SGGGSI++KQP LHLHC++M LPNI+ AL+                   FVA
Sbjct: 403  NKLPFGLKSGGGSIAEKQPWLHLHCKQMTLPNISAALEHPQSLNDDDRHLSKLEKLSFVA 462

Query: 1061 PVPSYMKESWEILN 1102
            P+P++M++SW+IL+
Sbjct: 463  PLPTHMQQSWDILS 476


>gb|OAY82176.1| RNA pseudouridine synthase 4, mitochondrial [Ananas comosus]
          Length = 477

 Score =  439 bits (1130), Expect = e-149
 Identities = 222/374 (59%), Positives = 283/374 (75%), Gaps = 7/374 (1%)
 Frame = +2

Query: 2    RCCPHLPASLVQKLFRLRQVRKDLVESAGDCAEAEAKQNKPKRVSAKDTLVSGDIILLPI 181
            RCCP LPA+LV KLFRLRQVRK++  S     ++ A++ + KRVSAK+ ++ GD+ILLP 
Sbjct: 103  RCCPDLPATLVHKLFRLRQVRKNVASSTISYMDSHAEKMQSKRVSAKNAMMPGDVILLPA 162

Query: 182  TVQK-LVTETKDCSTETEIDFIRSLVLYKDPAIIVINKPPGMPVQGGVGIKHSMDVLGAM 358
            TVQK +V +  D S E ++ ++RS+ LY+D  IIV+NKPP MPVQGG+GIK+S+D L ++
Sbjct: 163  TVQKSIVGKFDDASGEDDMKYMRSIELYRDTTIIVLNKPPSMPVQGGIGIKYSIDALASI 222

Query: 359  SLKYDYSEPPRLVHRLDRESSGILVMGRTQTSASILHTIFREKTSGVGVNDIESIQRALQ 538
            SLKY+Y+E PRLVHRLDR+SSG+LV+ R Q  ASILH++FREKT+G   NDI+S  R LQ
Sbjct: 223  SLKYEYAESPRLVHRLDRDSSGVLVLARNQFCASILHSLFREKTTGASFNDIKSASRVLQ 282

Query: 539  KKYWALVIGTPRLSKGRIPAPLAKIVLEDGKSDRITIARD-ESTPSQHALTEYKVIRS-A 712
            +KY ALVIG PR SKG I APLAK++ EDGK++RITIA D +S  +QHALTEYKVI S  
Sbjct: 283  RKYLALVIGIPRHSKGLISAPLAKVIQEDGKAERITIADDMKSASAQHALTEYKVIESFP 342

Query: 713  HGYTWLELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQ----PKVEH 880
            HGYTWLEL PLTGRKHQLRVHCAE L TPIVGDYKYGWK+HR  +P+P        K   
Sbjct: 343  HGYTWLELCPLTGRKHQLRVHCAEVLRTPIVGDYKYGWKSHRRWKPVPFPPTIDVEKFPR 402

Query: 881  HELPFGLESGGGSISDKQPRLHLHCREMILPNIATALQQXXXXXXXXXXXXXXXXXXFVA 1060
            ++LPFGL+SGGGSI++KQP LHLHC++M LPNI+ AL+                   FVA
Sbjct: 403  NKLPFGLKSGGGSIAEKQPWLHLHCKQMTLPNISAALEHLQSLNDDDRHLSKLEKLSFVA 462

Query: 1061 PVPSYMKESWEILN 1102
            P+P++M++SW+IL+
Sbjct: 463  PLPTHMQQSWDILS 476


>ref|XP_020685526.1| RNA pseudouridine synthase 4, mitochondrial-like [Dendrobium
            catenatum]
          Length = 468

 Score =  433 bits (1114), Expect = e-146
 Identities = 222/369 (60%), Positives = 274/369 (74%), Gaps = 2/369 (0%)
 Frame = +2

Query: 5    CCPHLPASLVQKLFRLRQVRKDLVESAGDCAEAEAKQNKPKRVSAKDTLVSGDIILLPIT 184
            C PHLP SLVQKLFRLRQVRKDLV S    +  + + ++ KRVSAK+ + SG++ILLPIT
Sbjct: 101  CVPHLPMSLVQKLFRLRQVRKDLV-SINASSRVQFEGHQLKRVSAKEVMTSGEVILLPIT 159

Query: 185  VQKLVTETKDC-STETEIDFIRSLVLYKDPAIIVINKPPGMPVQGGVGIKHSMDVLGAMS 361
            V+    + K+      EI FIRSL+LYKD AIIVINKP G+P QGG GIK+S+DVL A S
Sbjct: 160  VKNFTKKDKEQRDNHKEIKFIRSLILYKDSAIIVINKPHGLPTQGGFGIKNSIDVLAATS 219

Query: 362  LKYDYSEPPRLVHRLDRESSGILVMGRTQTSASILHTIFREKTSGVGVNDIESIQRALQK 541
            LK+D  E P+LVHRLDR+ SG+LV+GRTQ S+SILH+IFREKTS V  + +++  R LQ+
Sbjct: 220  LKFDCPESPKLVHRLDRDCSGLLVLGRTQISSSILHSIFREKTSRVLKHSVKNASRVLQR 279

Query: 542  KYWALVIGTPRLSKGRIPAPLAKIVLEDGKSDRITIARDESTPSQHALTEYKVIRSAHGY 721
            KYWALVIGTP+ S G + AP+ KIVLEDGKS+RIT+ ++    SQHALTEYKVI++++GY
Sbjct: 280  KYWALVIGTPKHSSGLLSAPIGKIVLEDGKSERITVIKERPASSQHALTEYKVIKTSNGY 339

Query: 722  TWLELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQ-PKVEHHELPFG 898
            TWLEL PLTGRKHQLRVHCAE L TPIVGDYKYGW AH+  EP+   +  K+   +LPFG
Sbjct: 340  TWLELCPLTGRKHQLRVHCAEVLRTPIVGDYKYGWHAHKKWEPIVIAKTAKLPKEKLPFG 399

Query: 899  LESGGGSISDKQPRLHLHCREMILPNIATALQQXXXXXXXXXXXXXXXXXXFVAPVPSYM 1078
            L+   GSIS+KQPRLHLHCR+MILPNIA A+Q                    VAP+P YM
Sbjct: 400  LDFESGSISEKQPRLHLHCRQMILPNIAEAVQHLEPLSTTNCDLAGLDVLDLVAPLPPYM 459

Query: 1079 KESWEILNY 1105
              SW+IL++
Sbjct: 460  LLSWDILSF 468


>ref|XP_018827853.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
            [Juglans regia]
          Length = 476

 Score =  431 bits (1108), Expect = e-145
 Identities = 222/377 (58%), Positives = 281/377 (74%), Gaps = 11/377 (2%)
 Frame = +2

Query: 2    RCCPHLPASLVQKLFRLRQVRKDLVESAGDCAEAEAKQNKP-KRVSAKDTLVSGDIILLP 178
            RCCP LP SLVQKLFRLRQVR++  +    C +A+ +Q +  KRVSAKD++  GD I LP
Sbjct: 103  RCCPDLPRSLVQKLFRLRQVRRESNDVGSTCVDAQVQQERRLKRVSAKDSMNVGDRIFLP 162

Query: 179  ITVQKLVTETKDCS-TETEIDFIRSLVLYKDPAIIVINKPPGMPVQGGVGIKHSMDVLGA 355
            ITVQ+   E +DC   E E +F+RSLVLYKDPAI+V+NKPPGMPVQGG+GIK S+D L A
Sbjct: 163  ITVQEFPFEKQDCHCNEEEANFVRSLVLYKDPAIVVVNKPPGMPVQGGIGIKQSLDGLAA 222

Query: 356  MSLKYDYSEPPRLVHRLDRESSGILVMGRTQTSASILHTIFREKTSGVGVNDIESIQRAL 535
              L Y+YSE PRLVHRLDR+SSGILVMGRTQTSA++LH+IFREKT G   +D+++  R L
Sbjct: 223  TCLTYNYSETPRLVHRLDRDSSGILVMGRTQTSAAVLHSIFREKTFG-AKDDVDNEVRIL 281

Query: 536  QKKYWALVIGTPRLSKGRIPAPLAKIVLEDGKSDRITIARD-ESTPSQHALTEYKVIRSA 712
            +++YWALVIG+PR  KG I  PL K+V+++GKSDRITI  + ++  +QHALT+Y+VI+S+
Sbjct: 282  ERRYWALVIGSPRRQKGLISVPLGKVVVDNGKSDRITIVDNAQNMSAQHALTKYQVIKSS 341

Query: 713  -HGYTWLELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKVEHHE- 886
             +GYTWLEL PLTGRKHQLRVHCAE LGTPIVGD KYGW+AH+ L+ +P    + E HE 
Sbjct: 342  CYGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDLKYGWQAHKKLKHLPWPSLERESHEN 401

Query: 887  ------LPFGLESGGGSISDKQPRLHLHCREMILPNIATALQQXXXXXXXXXXXXXXXXX 1048
                  +PFGL+   GSIS+K PRLHLHC++M+LPN++ ALQ                  
Sbjct: 402  VTKGKTIPFGLDLQSGSISEKHPRLHLHCKQMVLPNVSMALQN--VQFSSDYHLSQVESL 459

Query: 1049 XFVAPVPSYMKESWEIL 1099
              VAP+PSYM+ SW+IL
Sbjct: 460  ELVAPLPSYMQRSWDIL 476


>ref|XP_020102938.1| RNA pseudouridine synthase 4, mitochondrial-like isoform X5 [Ananas
            comosus]
          Length = 478

 Score =  430 bits (1106), Expect = e-145
 Identities = 220/375 (58%), Positives = 282/375 (75%), Gaps = 8/375 (2%)
 Frame = +2

Query: 2    RCCPHLPASLVQKLFRLRQVRKDLVESAGDCAEAEAKQNKPKRVSAKDTLVSGDIILLPI 181
            RCCP LPA+LV KLFRLRQVRK++  S     ++ A++ + KRVSAK+ ++ GD+ILLP 
Sbjct: 103  RCCPDLPATLVHKLFRLRQVRKNVASSTISYMDSHAEKMQSKRVSAKNAMMPGDVILLPA 162

Query: 182  TVQK-LVTETKDCSTETEIDFIRSLVLYKDPAIIVINKPPGMPVQGGVGIKHSMDVLGAM 358
            TVQK +V +  D S E ++ ++RS+ LY+D  IIV+NKPP MPVQGG+GIK+S+D L ++
Sbjct: 163  TVQKSIVGKFDDASGEDDMKYMRSIELYRDTTIIVLNKPPSMPVQGGIGIKYSIDALASI 222

Query: 359  SLKYDYSEPPRLVH-RLDRESSGILVMGRTQTSASILHTIFREKTSGVGVNDIESIQRAL 535
            SLKY+Y+E PRLV  +LDR+SSG+LV+ R Q  ASILH++FREKT+G   NDI+S  R L
Sbjct: 223  SLKYEYAESPRLVSLKLDRDSSGVLVLARNQFCASILHSLFREKTTGASFNDIKSASRVL 282

Query: 536  QKKYWALVIGTPRLSKGRIPAPLAKIVLEDGKSDRITIARD-ESTPSQHALTEYKVIRS- 709
            Q+KY ALVIG PR SKG I APLAK++ EDGK++RITIA D +S  +QHALTEYKVI S 
Sbjct: 283  QRKYLALVIGIPRHSKGLISAPLAKVIQEDGKAERITIADDMKSASAQHALTEYKVIESF 342

Query: 710  AHGYTWLELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQ----PKVE 877
             HGYTWLEL PLTGRKHQLRVHCAE L TPIVGDYKYGWK+HR  +P+P        K  
Sbjct: 343  PHGYTWLELCPLTGRKHQLRVHCAEVLRTPIVGDYKYGWKSHRRWKPVPFPPTIDVEKFP 402

Query: 878  HHELPFGLESGGGSISDKQPRLHLHCREMILPNIATALQQXXXXXXXXXXXXXXXXXXFV 1057
             ++LPFGL+SGGGSI++KQP LHLHC++M LPNI+ AL+                   FV
Sbjct: 403  RNKLPFGLKSGGGSIAEKQPWLHLHCKQMTLPNISAALEHPQSLNDDDRHLSKLEKLSFV 462

Query: 1058 APVPSYMKESWEILN 1102
            AP+P++M++SW+IL+
Sbjct: 463  APLPTHMQQSWDILS 477


>ref|XP_002282614.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
            [Vitis vinifera]
 emb|CBI40257.3| unnamed protein product, partial [Vitis vinifera]
          Length = 476

 Score =  426 bits (1095), Expect = e-143
 Identities = 222/380 (58%), Positives = 279/380 (73%), Gaps = 13/380 (3%)
 Frame = +2

Query: 2    RCCPHLPASLVQKLFRLRQVRKDLVESAGDCAEAEAKQNKPKRVSAKDTLVSGDIILLPI 181
            RCCP LP SLVQKLFRLRQVR++           + ++++ KRV+AKD +  GD ILLPI
Sbjct: 101  RCCPQLPRSLVQKLFRLRQVRRESYNMITSDIGVQNQEHRLKRVAAKDLMNLGDQILLPI 160

Query: 182  TVQKLVTETKD--CSTETEIDFIRSLVLYKDPAIIVINKPPGMPVQGGVGIKHSMDVLGA 355
            TV++  +E  +  C+ E EI+F+ +L LYKDPAIIV+NKPPG+PVQGG+GIK S+D L A
Sbjct: 161  TVEEFPSEKHEYHCNDE-EINFVHNLELYKDPAIIVVNKPPGLPVQGGIGIKRSLDELAA 219

Query: 356  MSLKYDYSEPPRLVHRLDRESSGILVMGRTQTSASILHTIFREKTSGVGVNDIESIQRAL 535
              L+YD SEPPRLVHRLDR+SSGIL+MGRTQTSA+ILH+IFREKT G   NDI++ +R L
Sbjct: 220  TYLRYDCSEPPRLVHRLDRDSSGILIMGRTQTSATILHSIFREKTFGASNNDIDTKKRIL 279

Query: 536  QKKYWALVIGTPRLSKGRIPAPLAKIVLEDGKSDRITIARDEST-PSQHALTEYKVIRSA 712
            Q++YWALVIG+PR  +G I APL K+V++DGKS+RITI  +  T  SQHA+TEY+VI+S+
Sbjct: 280  QRRYWALVIGSPRRPRGLISAPLGKVVVDDGKSERITIVDNVQTMSSQHAITEYRVIKSS 339

Query: 713  -HGYTWLELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKVEHH-- 883
             HGYTWLEL PLTGRKHQLRVHCAE LGTPIVGDYKYGW+AHR  + +   Q  +E +  
Sbjct: 340  CHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWKQL--FQSNIEKNLD 397

Query: 884  -------ELPFGLESGGGSISDKQPRLHLHCREMILPNIATALQQXXXXXXXXXXXXXXX 1042
                     PFGL+   GSI DKQP LHLHC++M+LPN++ ALQ                
Sbjct: 398  ENLSNRKTHPFGLDLESGSILDKQPHLHLHCKQMVLPNVSLALQN--LQLSAECDLSELE 455

Query: 1043 XXXFVAPVPSYMKESWEILN 1102
               FVAP+PS+M+ SW+ILN
Sbjct: 456  SLEFVAPLPSHMQRSWDILN 475


>ref|XP_010271251.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X1 [Nelumbo nucifera]
          Length = 472

 Score =  426 bits (1094), Expect = e-143
 Identities = 225/376 (59%), Positives = 277/376 (73%), Gaps = 10/376 (2%)
 Frame = +2

Query: 2    RCCPHLPASLVQKLFRLRQVRKDLVESAGDCAEAE-AKQNKPKRVSAKDTLVSGDIILLP 178
            RCCPHLP SLVQKLFRLRQVR++  +S         A++++ KRV+AK+ +  GD I LP
Sbjct: 100  RCCPHLPRSLVQKLFRLRQVRRESCDSMSSLDIGNHAQEHRLKRVTAKEVMNLGDRIFLP 159

Query: 179  ITVQKLVTETKD--CSTETEIDFIRSLVLYKDPAIIVINKPPGMPVQGGVGIKHSMDVLG 352
            ITVQ+L +ET++  C+ E EI +I SL LYKDPAII +NKP GMPVQGG+GIK S+D L 
Sbjct: 160  ITVQELPSETQEHYCN-EDEISYICSLELYKDPAIIAVNKPHGMPVQGGIGIKKSLDELA 218

Query: 353  AMSLKYDYSEPPRLVHRLDRESSGILVMGRTQTSASILHTIFREKTSGVGVNDIESIQRA 532
            A  L+YDYSEPPRLVHRLDR+SSGILVMGRTQTSA+ILH+IFREKT G  +ND + +   
Sbjct: 219  ATYLRYDYSEPPRLVHRLDRDSSGILVMGRTQTSATILHSIFREKTFGASINDNDKM--I 276

Query: 533  LQKKYWALVIGTPRLSKGRIPAPLAKIVLEDGKSDRITI-ARDESTPSQHALTEYKVIR- 706
            LQ++YWALVIGTP+ + G I APL K+VL+DGKS+R+T+     +  SQHA+T+Y+V++ 
Sbjct: 277  LQRRYWALVIGTPKRANGLISAPLGKVVLDDGKSERMTVDTNGNAISSQHAVTKYQVMKS 336

Query: 707  SAHGYTWLELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPK----- 871
            SAHGYTWLEL PLTGRKHQLRVHCAE LGTPIVGDYKYGW+AHR  +P+    P+     
Sbjct: 337  SAHGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWKPLSWSNPQKNKKL 396

Query: 872  VEHHELPFGLESGGGSISDKQPRLHLHCREMILPNIATALQQXXXXXXXXXXXXXXXXXX 1051
                E PFGL+S GGSI++KQP LHLHCR+MI PNIA ALQ                   
Sbjct: 397  PRSKESPFGLDSEGGSIAEKQPHLHLHCRQMIFPNIALALQH--LQSSSNCDLSELESLN 454

Query: 1052 FVAPVPSYMKESWEIL 1099
             VAP+P +M+ SW IL
Sbjct: 455  LVAPLPPHMQRSWGIL 470


>ref|XP_022749157.1| RNA pseudouridine synthase 4, mitochondrial isoform X1 [Durio
            zibethinus]
          Length = 477

 Score =  426 bits (1094), Expect = e-143
 Identities = 226/379 (59%), Positives = 280/379 (73%), Gaps = 12/379 (3%)
 Frame = +2

Query: 2    RCCPHLPASLVQKLFRLRQVRKD--LVESAGDCAEAEAKQNKPKRVSAKDTLVSGDIILL 175
            +CCP LP SLVQKLFRLRQVR++  +VE + D  +++ ++ + KRV AKD+L  GD I L
Sbjct: 102  KCCPELPRSLVQKLFRLRQVRRESKIVEVSDD--DSQVQRIQLKRVGAKDSLNIGDRIFL 159

Query: 176  PITVQKLVTETKDCS-TETEIDFIRSLVLYKDPAIIVINKPPGMPVQGGVGIKHSMDVLG 352
            PITV++   E ++   T+ E++FIR+L LYKDPAIIV+NKPPGMPVQGG+GIK S+D L 
Sbjct: 160  PITVREFPEEKQEHGCTDEELNFIRNLELYKDPAIIVLNKPPGMPVQGGIGIKWSLDELA 219

Query: 353  AMSLKYDYSEPPRLVHRLDRESSGILVMGRTQTSASILHTIFREKTSGVGVNDIESIQRA 532
            A  L YDYSEPPRLVHRLDR+ SGILVMGRTQTSA ILH++FRE+T GV  +D ++ +R 
Sbjct: 220  ATWLCYDYSEPPRLVHRLDRDCSGILVMGRTQTSARILHSVFREETIGVSEHDFDNEKRI 279

Query: 533  LQKKYWALVIGTPRLSKGRIPAPLAKIVLEDGKSDRITI-ARDESTPSQHALTEYKVIR- 706
            LQKKYWALVIG+PR  KG I APL K+V++DGKSDRIT+    +   SQHA+TEY VI+ 
Sbjct: 280  LQKKYWALVIGSPRRPKGTISAPLRKVVVDDGKSDRITVFDNTKIMSSQHAITEYSVIKT 339

Query: 707  SAHGYTWLELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWKAHRNLEPMP-------CVQ 865
            S+HGYTWLEL PLTGRKHQLRVHCAE LGTPIVGDYKYGW+AHR  + +P         +
Sbjct: 340  SSHGYTWLELSPLTGRKHQLRVHCAEILGTPIVGDYKYGWQAHRRWQNLPESDLGKNSNE 399

Query: 866  PKVEHHELPFGLESGGGSISDKQPRLHLHCREMILPNIATALQQXXXXXXXXXXXXXXXX 1045
               + + LPFGL    GSI +K+ RLHLHCREMILPN++ ALQ                 
Sbjct: 400  KFSKENSLPFGLNMNSGSILEKRLRLHLHCREMILPNVSQALQ--YLQSSTDHDLSKLKS 457

Query: 1046 XXFVAPVPSYMKESWEILN 1102
               VAP+PSYM++SW+ILN
Sbjct: 458  LEIVAPLPSYMQKSWDILN 476


>ref|XP_015892750.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Ziziphus
            jujuba]
          Length = 486

 Score =  423 bits (1087), Expect = e-142
 Identities = 216/375 (57%), Positives = 269/375 (71%), Gaps = 8/375 (2%)
 Frame = +2

Query: 2    RCCPHLPASLVQKLFRLRQVRKDLVESAGDCAEAEAKQNKPKRVSAKDTLVSGDIILLPI 181
            RCCP LP SLVQKLFRLRQVR++  +        E ++ + +RV    +   GD I LPI
Sbjct: 113  RCCPELPRSLVQKLFRLRQVRRESCDIGHSEMGDELQKPRLRRVITVFSYNLGDRIYLPI 172

Query: 182  TVQKLVTETKDCS-TETEIDFIRSLVLYKDPAIIVINKPPGMPVQGGVGIKHSMDVLGAM 358
            +VQ+   + K+    E E+ FIRSL LYKDPAIIV+NKPPGMPVQGG+GIK S+D L A 
Sbjct: 173  SVQEFPVDKKEYHCNEEEVSFIRSLELYKDPAIIVVNKPPGMPVQGGIGIKRSLDELAAT 232

Query: 359  SLKYDYSEPPRLVHRLDRESSGILVMGRTQTSASILHTIFREKTSGVGVNDIESIQRALQ 538
             L YD  EPPRLVHRLDR+SSGILVMGRTQTSA++LHTIFREKT G   ++I++++R LQ
Sbjct: 233  CLSYDCLEPPRLVHRLDRDSSGILVMGRTQTSATVLHTIFREKTFGASHDEIDNVKRILQ 292

Query: 539  KKYWALVIGTPRLSKGRIPAPLAKIVLEDGKSDRITIARDEST-PSQHALTEYKVIRSAH 715
            ++YWALVIG+PR  KG I APL K+VL++GKSDRIT+  +  T  SQHA+T+YKVI S+H
Sbjct: 293  RRYWALVIGSPRHRKGFISAPLRKVVLDNGKSDRITVMHNSQTLASQHAITKYKVIGSSH 352

Query: 716  GYTWLELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKVEHHE--- 886
            GYTWLEL P+TGRKHQLRVHCAE LGTPI+GDYKYGW+AH+N +P PC   +   +E   
Sbjct: 353  GYTWLELSPITGRKHQLRVHCAEVLGTPILGDYKYGWQAHKNWKPFPCSNHENNSNEVPK 412

Query: 887  ---LPFGLESGGGSISDKQPRLHLHCREMILPNIATALQQXXXXXXXXXXXXXXXXXXFV 1057
               LPFGL+   G ISDK PRLHLHC++M+LP+I+  LQ                    V
Sbjct: 413  RKILPFGLDLDNGDISDKHPRLHLHCKQMVLPDISLVLQN--VQLYSDYDLSHLESIKLV 470

Query: 1058 APVPSYMKESWEILN 1102
            A +PS+M+ SWE+ N
Sbjct: 471  ASLPSHMQRSWELTN 485


>gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao]
          Length = 477

 Score =  422 bits (1085), Expect = e-142
 Identities = 224/379 (59%), Positives = 275/379 (72%), Gaps = 12/379 (3%)
 Frame = +2

Query: 2    RCCPHLPASLVQKLFRLRQVRKD--LVESAGDCAEAEAKQNKPKRVSAKDTLVSGDIILL 175
            RCCP LP SLVQKLFRLRQVR++  ++E AGD  + +  Q K  RV AKD L  GD I L
Sbjct: 102  RCCPELPRSLVQKLFRLRQVRRESHVLEVAGDGCQVQTVQLK--RVGAKDALNIGDRIFL 159

Query: 176  PITVQKLVTETKDCS-TETEIDFIRSLVLYKDPAIIVINKPPGMPVQGGVGIKHSMDVLG 352
            P +V++   E ++   TE E++FIR L LYKDPAIIV+NKPPGMPVQGG+GIK S+D L 
Sbjct: 160  PFSVREFREEKQESGCTEEELNFIRGLELYKDPAIIVLNKPPGMPVQGGIGIKWSLDKLA 219

Query: 353  AMSLKYDYSEPPRLVHRLDRESSGILVMGRTQTSASILHTIFREKTSGVGVNDIESIQRA 532
            A  L +DYSEPPRLVHRLDR+SSGILVMGRTQ SA+ILH++FRE+T+    +D+++ +R 
Sbjct: 220  AACLCFDYSEPPRLVHRLDRDSSGILVMGRTQMSATILHSVFREETNDASKDDVDNEKRI 279

Query: 533  LQKKYWALVIGTPRLSKGRIPAPLAKIVLEDGKSDRITI-ARDESTPSQHALTEYKVIR- 706
            LQK+YWALVIG+PR  KG I APL K+V++DGKSDRIT+    +   SQ A TEY+VI+ 
Sbjct: 280  LQKRYWALVIGSPRRPKGMIVAPLRKVVVDDGKSDRITVFDNSQIVSSQRAKTEYQVIKT 339

Query: 707  SAHGYTWLELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPK----- 871
            ++HGYTWLEL PLTGRKHQLRVHCAE LGTPIVGDYKYGW+AHR  + +P    K     
Sbjct: 340  TSHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRRWQHLPESDLKKSSND 399

Query: 872  --VEHHELPFGLESGGGSISDKQPRLHLHCREMILPNIATALQQXXXXXXXXXXXXXXXX 1045
               E + LPFGL    GSIS K+PRLHLHCREMI PN++ ALQ                 
Sbjct: 400  KCPEENMLPFGLNMDSGSISAKRPRLHLHCREMIFPNVSQALQN--LQLSTDHDLSKLKS 457

Query: 1046 XXFVAPVPSYMKESWEILN 1102
               VAP+PSYM++SW+I+N
Sbjct: 458  LEVVAPLPSYMQKSWDIMN 476


>ref|XP_011624446.2| RNA pseudouridine synthase 4, mitochondrial isoform X2 [Amborella
            trichopoda]
          Length = 456

 Score =  421 bits (1083), Expect = e-142
 Identities = 216/373 (57%), Positives = 276/373 (73%), Gaps = 6/373 (1%)
 Frame = +2

Query: 2    RCCPHLPASLVQKLFRLRQVRKDLVESA-GDCAEAEAKQNKPKRVSAKDTLVSGDIILLP 178
            RCCP +P SL+QKLFRLRQVRK+ +  A   C   +A+  + KRV AKDTL SGD I LP
Sbjct: 83   RCCPQVPRSLIQKLFRLRQVRKESLNPAIASCLHKQAQYQQIKRVFAKDTLNSGDRIFLP 142

Query: 179  ITVQKLVTETKD--CSTETEIDFIRSLVLYKDPAIIVINKPPGMPVQGGVGIKHSMDVLG 352
            ITV   V    D  C+ E E+++IRSL +YKD AI+V+NKPPG+PVQGG G+K S+DVL 
Sbjct: 143  ITVNPAVEVEDDYICNKE-EMEYIRSLEVYKDAAIVVVNKPPGLPVQGGTGVKLSLDVLV 201

Query: 353  AMSLKYDYSEPPRLVHRLDRESSGILVMGRTQTSASILHTIFREKTSGVGVNDIESIQRA 532
            A SLKYDYSE PRLVHRLD++SSGILVMGRTQ S ++LH+IFR+KT G   NDI++ +  
Sbjct: 202  ASSLKYDYSEVPRLVHRLDQDSSGILVMGRTQESTTLLHSIFRDKTCGASFNDIKNSKII 261

Query: 533  LQKKYWALVIGTPRLSKGRIPAPLAKIVLEDGKSDRITIARDESTPS-QHALTEYKVIRS 709
            L++KYWALVIG P+ S+G I APL+K++L+DGKS+RIT++ D    S +HA+TEY+V+RS
Sbjct: 262  LKRKYWALVIGNPQPSEGLISAPLSKLLLDDGKSERITVSEDSKNKSARHAITEYRVLRS 321

Query: 710  A-HGYTWLELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKVE-HH 883
            + HG+TWLEL P TGRKHQLRVHCAE LGTPI+GDYKYGW AHR  +P P ++ +   + 
Sbjct: 322  SGHGFTWLELYPRTGRKHQLRVHCAEVLGTPILGDYKYGWNAHRKWKPFPTLKFEERLNR 381

Query: 884  ELPFGLESGGGSISDKQPRLHLHCREMILPNIATALQQXXXXXXXXXXXXXXXXXXFVAP 1063
            + PFGL+  GGS+SDK+PRLHLHCR+M LPN++ A Q                    VAP
Sbjct: 382  KAPFGLDLEGGSVSDKKPRLHLHCRQMTLPNMSLAFQH--LHEQSVDDLSKLEKLDLVAP 439

Query: 1064 VPSYMKESWEILN 1102
            +P +M+ SW+ILN
Sbjct: 440  LPLHMRRSWDILN 452


>dbj|GAV62308.1| PseudoU_synth_2 domain-containing protein [Cephalotus follicularis]
          Length = 467

 Score =  420 bits (1079), Expect = e-141
 Identities = 216/375 (57%), Positives = 270/375 (72%), Gaps = 9/375 (2%)
 Frame = +2

Query: 2    RCCPHLPASLVQKLFRLRQVRKDLVESAGDCAEAEAKQNKPKRVSAKDTLVSGDIILLPI 181
            +CCP LP SLVQKLFRLRQVR+   +       A+ +  + KRV+AKD L  GD I LPI
Sbjct: 93   KCCPELPRSLVQKLFRLRQVRRGSADGGSSDLGAQGQAPQLKRVAAKDLLNLGDQIFLPI 152

Query: 182  TVQKLVTETKDCST-ETEIDFIRSLVLYKDPAIIVINKPPGMPVQGGVGIKHSMDVLGAM 358
            +VQ+L +E ++C   E E++F+RSL LYKDPAIIV+NKP GMPVQGGVGIK S+D L A 
Sbjct: 153  SVQELPSEKQECHCCEEEVNFVRSLELYKDPAIIVVNKPSGMPVQGGVGIKRSLDELAAT 212

Query: 359  SLKYDYSEPPRLVHRLDRESSGILVMGRTQTSASILHTIFREKTSGVGVNDIESIQRALQ 538
             L YDYSEPPRLVHRLDR+ SGILVMGRTQ SA++LH+IFREKT      +I + +R LQ
Sbjct: 213  CLSYDYSEPPRLVHRLDRDCSGILVMGRTQLSATVLHSIFREKTVDASKCEINNKKRILQ 272

Query: 539  KKYWALVIGTPRLSKGRIPAPLAKIVLEDGKSDRITIAR-DESTPSQHALTEYKVIR-SA 712
            ++YWALVIG+PR +KG + APL K+VL++GKSDRIT+    +   SQHA+TEY+VI+ S+
Sbjct: 273  RRYWALVIGSPRRTKGLVAAPLGKVVLDNGKSDRITVVDCAQMMSSQHAVTEYRVIQSSS 332

Query: 713  HGYTWLELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPKVEHHE-- 886
            HGYTWLEL PLTGRKHQLRVHCAE LGTPIVGDYKYGW+ HR  +  P    K  + +  
Sbjct: 333  HGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQVHRKWKQFPFSDLKNSNEDLC 392

Query: 887  ----LPFGLESGGGSISDKQPRLHLHCREMILPNIATALQQXXXXXXXXXXXXXXXXXXF 1054
                LPFG++   GS+S+K PRLHLHC+++ILPN++ ALQ                    
Sbjct: 393  KEKTLPFGIDMERGSVSEKHPRLHLHCKQIILPNVSQALQN--LLASSDYDLSELPSIEL 450

Query: 1055 VAPVPSYMKESWEIL 1099
            VAP+P YM+ SW+IL
Sbjct: 451  VAPMPPYMQRSWDIL 465


>ref|XP_007199810.1| RNA pseudouridine synthase 4, mitochondrial [Prunus persica]
 gb|ONH91758.1| hypothetical protein PRUPE_8G135400 [Prunus persica]
          Length = 483

 Score =  420 bits (1079), Expect = e-141
 Identities = 222/384 (57%), Positives = 269/384 (70%), Gaps = 17/384 (4%)
 Frame = +2

Query: 2    RCCPHLPASLVQKLFRLRQVRKDLVESAGDCAEAEAKQNKPKRVSAKDTLVSGDIILLPI 181
            RCCP LP SLVQKLFRLRQVR++  +        EA +   KRV+AKD++  GD I LP+
Sbjct: 101  RCCPELPRSLVQKLFRLRQVRRESCDMECSGEGVEALERPLKRVAAKDSMNVGDRIHLPL 160

Query: 182  TVQK-------LVTETKDC-STETEIDFIRSLVLYKDPAIIVINKPPGMPVQGGVGIKHS 337
            +VQ+       L  + K+C  +E E+ FIRSL LYKDPAIIVINKPPGMPVQGG+GIK S
Sbjct: 161  SVQEFPNDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQGGIGIKRS 220

Query: 338  MDVLGAMSLKYDYSEPPRLVHRLDRESSGILVMGRTQTSASILHTIFREKTSGVGVNDIE 517
            +D L A  L YD+SEPPRLVHRLDR+SSGILVMGRTQTSA++LH+IFREKT G   ++I+
Sbjct: 221  LDELAAACLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFGASNDEID 280

Query: 518  SIQRALQKKYWALVIGTPRLSKGRIPAPLAKIVLEDGKSDRITIARDEST-PSQHALTEY 694
              +R LQ++YWALVIG+PR  KG I APL K+V+++GKSDRITI  D  T PSQHA+T+Y
Sbjct: 281  DAKRILQRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPSQHAITKY 340

Query: 695  KVIRS-AHGYTWLELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPK 871
            KVI S   GYTWLEL PLTGRKHQLRVHCAE L TPIVGDYKYGW+ HRN +P+     +
Sbjct: 341  KVIGSPCPGYTWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGWQTHRNWKPLAWSNNE 400

Query: 872  VEHHE-------LPFGLESGGGSISDKQPRLHLHCREMILPNIATALQQXXXXXXXXXXX 1030
                E       LPF L    GS+S+K PRLHLHC++M+LPN+  ALQ            
Sbjct: 401  CHSDEEFPKRKNLPFDLNMESGSVSEKNPRLHLHCKQMVLPNVNLALQN--VKLHSDSDL 458

Query: 1031 XXXXXXXFVAPVPSYMKESWEILN 1102
                    VA +PS+M+ SW I N
Sbjct: 459  SELESLELVAALPSFMQRSWNITN 482


>ref|XP_021816055.1| RNA pseudouridine synthase 4, mitochondrial [Prunus avium]
          Length = 485

 Score =  420 bits (1079), Expect = e-141
 Identities = 223/384 (58%), Positives = 269/384 (70%), Gaps = 17/384 (4%)
 Frame = +2

Query: 2    RCCPHLPASLVQKLFRLRQVRKDLVESAGDCAEAEAKQNKPKRVSAKDTLVSGDIILLPI 181
            RCCP LP SLVQKLFRLRQVR++  +        EA +   KRV+AKD++  GD I LPI
Sbjct: 103  RCCPELPRSLVQKLFRLRQVRRESCDMECSGEGVEALERPLKRVAAKDSMNVGDRIHLPI 162

Query: 182  TVQK-------LVTETKDCS-TETEIDFIRSLVLYKDPAIIVINKPPGMPVQGGVGIKHS 337
            +VQ+       L  + K+C  +E E+ FIRSL LYKDPAIIVINKPPGMPVQGG+GIK S
Sbjct: 163  SVQEFPNDKQELPNDKKECHCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQGGIGIKRS 222

Query: 338  MDVLGAMSLKYDYSEPPRLVHRLDRESSGILVMGRTQTSASILHTIFREKTSGVGVNDIE 517
            +D L A  L YD+SEPPRLVHRLDR+SSGILVMGRTQTSA++LH+IFREKT G   + I+
Sbjct: 223  LDELAAACLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFGASNDVID 282

Query: 518  SIQRALQKKYWALVIGTPRLSKGRIPAPLAKIVLEDGKSDRITIARDEST-PSQHALTEY 694
              +R LQ++YWALVIG+PR  KG I APL K+V+++GKSDRITI  D  T PSQHA+T+Y
Sbjct: 283  DAKRILQRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPSQHAITKY 342

Query: 695  KVIRS-AHGYTWLELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWKAHRNLEPMPCVQPK 871
            KVI S   GYTWLEL PLTGRKHQLRVHCAE L TPIVGDYKYGW+ HRN +P+     +
Sbjct: 343  KVIGSPCPGYTWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGWQTHRNWKPLAWSNNE 402

Query: 872  VEHHE-------LPFGLESGGGSISDKQPRLHLHCREMILPNIATALQQXXXXXXXXXXX 1030
                E       LPF L    GS+S+K PRLHLHC++M+LP++  ALQ            
Sbjct: 403  CHSDEEFPKRKNLPFDLNMESGSVSEKNPRLHLHCKQMVLPDVNLALQN--VKLHSDSDL 460

Query: 1031 XXXXXXXFVAPVPSYMKESWEILN 1102
                    VAP+PS+M+ SW I N
Sbjct: 461  SELESLELVAPLPSFMQRSWNITN 484


>ref|XP_019225818.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Nicotiana
            attenuata]
 gb|OIT32415.1| rna uridine synthase 4, mitochondrial [Nicotiana attenuata]
          Length = 464

 Score =  419 bits (1077), Expect = e-141
 Identities = 220/378 (58%), Positives = 273/378 (72%), Gaps = 11/378 (2%)
 Frame = +2

Query: 2    RCCPHLPASLVQKLFRLRQVRKDLVESAGDCAEAEAKQNKPKRVSAKDTLVSGDIILLPI 181
            RCCP LP SLVQKLFRLRQVR++          ++ ++ +PKRV+AK+++  GD I LPI
Sbjct: 97   RCCPELPQSLVQKLFRLRQVRRE---------SSDVEEQRPKRVAAKESMNIGDRIFLPI 147

Query: 182  TVQKLVTE--TKDCSTETEIDFIRSLVLYKDPAIIVINKPPGMPVQGGVGIKHSMDVLGA 355
            TVQK  ++  T   S+E E+ F+ SL LYKDP IIV+NKPPG+PVQGG+GIK S+D L A
Sbjct: 148  TVQKFPSDKVTDYPSSEEEMKFLHSLELYKDPEIIVLNKPPGLPVQGGIGIKRSLDELAA 207

Query: 356  MSLKYDYSEPPRLVHRLDRESSGILVMGRTQTSASILHTIFREKTSGVGVNDIESIQRAL 535
              +KY+YSE PRLVHRLDR+ SGILVMGRTQ SAS+LH++FREKT G    D+ES +R L
Sbjct: 208  KYMKYEYSEAPRLVHRLDRDCSGILVMGRTQLSASVLHSVFREKTFGTQTEDLESKKRVL 267

Query: 536  QKKYWALVIGTPRLSKGRIPAPLAKIVLEDGKSDRITIARDESTPS-QHALTEYKVIRSA 712
            QK+YWALVIG PR SKG I  PL K+VL++GKS+RITI  D   PS Q A+TEY++I S+
Sbjct: 268  QKRYWALVIGCPRRSKGLISVPLGKVVLDNGKSERITIMSDVREPSAQFAVTEYRIIGSS 327

Query: 713  H-GYTWLELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWKAHRNLEPMPC------VQPK 871
              GYTWLEL PLTGRKHQLRVHCAE LGTPIVGDYKYGW+AHR L+ +        +  +
Sbjct: 328  EKGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKLKHLSSSTSIVNLGAR 387

Query: 872  VEHHEL-PFGLESGGGSISDKQPRLHLHCREMILPNIATALQQXXXXXXXXXXXXXXXXX 1048
            +   E+ PF L  G GSISDKQP LHLHC+EM+LPNI+ ALQQ                 
Sbjct: 388  IPEQEVDPFSLRLGNGSISDKQPHLHLHCKEMVLPNISLALQQ--ARVVSDADLVDVESI 445

Query: 1049 XFVAPVPSYMKESWEILN 1102
              VAP+PS+M++SW+ L+
Sbjct: 446  KLVAPLPSHMQKSWDCLS 463