BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00032283
         (1201 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD59438.1| Rps16 protein, partial (plastid) [Clivia gardenii]     87   5e-20
gb|KJB60706.1| hypothetical protein B456_009G321000 [Gossypium r...    66   5e-10
emb|CAD59435.1| Rps16 protein, partial (plastid) [Clivia nobilis]      60   1e-08
ref|YP_009175987.1| ribosomal protein S16 (chloroplast) [Ficus r...    59   4e-07
emb|CAD59436.1| Rps16 protein, partial (plastid) [Clivia mirabilis]    56   4e-07

>emb|CAD59438.1| Rps16 protein, partial (plastid) [Clivia gardenii]
          Length = 74

 Score = 87.4 bits (215), Expect(2) = 5e-20
 Identities = 46/51 (90%), Positives = 47/51 (92%), Gaps = 2/51 (3%)
 Frame = +1

Query: 955  GIVHNGARTKSIDSFIEGKNLGLVTINKLDQLCKYILNI--EIEG*KFEQV 1101
            GIVH+GARTKSIDSFI GKNLGLVTINKLDQLCKYILNI  EIEG KFEQV
Sbjct: 24   GIVHDGARTKSIDSFIGGKNLGLVTINKLDQLCKYILNIEMEIEGLKFEQV 74



 Score = 40.4 bits (93), Expect(2) = 5e-20
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +3

Query: 897 IDIVCSVLARNLICVGLVNR 956
           IDIVCSV ARNLICVGLVNR
Sbjct: 3   IDIVCSVPARNLICVGLVNR 22


>gb|KJB60706.1| hypothetical protein B456_009G321000 [Gossypium raimondii]
          Length = 75

 Score = 65.9 bits (159), Expect = 5e-10
 Identities = 36/70 (51%), Positives = 41/70 (58%)
 Frame = -1

Query: 982 LFELHYVLFLFTNPTQIRFLARTEQTMSIQEHLHSCRKWWM*ESTTNHVLQVARCFLPHR 803
           L+ LHY      NP +     RT+             KWW+  ST +HVLQVARCFLPHR
Sbjct: 12  LYYLHY------NPKKKTDYNRTKDVEQKAPSFLYNGKWWVLTSTADHVLQVARCFLPHR 65

Query: 802 FKRSFTITFL 773
           FKRSFTITFL
Sbjct: 66  FKRSFTITFL 75


>emb|CAD59435.1| Rps16 protein, partial (plastid) [Clivia nobilis]
          Length = 29

 Score = 60.5 bits (145), Expect = 1e-08
 Identities = 25/28 (89%), Positives = 27/28 (96%)
 Frame = +2

Query: 839 MIRCGFLHPPFSTGMKMLLNRHSLFCSC 922
           +IRCGFL+PPFS GMKMLLNRHSLFCSC
Sbjct: 2   LIRCGFLYPPFSIGMKMLLNRHSLFCSC 29


>ref|YP_009175987.1| ribosomal protein S16 (chloroplast) [Ficus racemosa]
 ref|YP_009390539.1| ribosomal protein S16 (chloroplast) [Ficus carica]
 gb|ALI30688.1| ribosomal protein S16 (chloroplast) [Ficus racemosa]
 gb|ARV87002.1| ribosomal protein S16 (chloroplast) [Ficus carica]
          Length = 117

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 28/40 (70%), Positives = 33/40 (82%)
 Frame = +1

Query: 958  IVHNGARTKSIDSFIEGKNLGLVTINKLDQLCKYILNIEI 1077
            I+H+GAR + IDSF  GKNLGLV+INKL QLCK I +IEI
Sbjct: 4    IIHDGARAERIDSFFGGKNLGLVSINKLRQLCKSIFDIEI 43


>emb|CAD59436.1| Rps16 protein, partial (plastid) [Clivia mirabilis]
          Length = 25

 Score = 56.2 bits (134), Expect = 4e-07
 Identities = 23/25 (92%), Positives = 24/25 (96%)
 Frame = +2

Query: 848 CGFLHPPFSTGMKMLLNRHSLFCSC 922
           CGFL+PPFS GMKMLLNRHSLFCSC
Sbjct: 1   CGFLYPPFSIGMKMLLNRHSLFCSC 25