BLASTX nr result
ID: Ophiopogon23_contig00031265
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon23_contig00031265
(1208 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|OMO99308.1| Integrase, catalytic core [Corchorus capsularis] 284 4e-82
gb|PKU77483.1| Retrovirus-related Pol polyprotein from transposo... 280 6e-82
gb|PKU65158.1| Retrovirus-related Pol polyprotein from transposo... 266 4e-79
gb|PKU59623.1| Retrovirus-related Pol polyprotein from transposo... 261 7e-79
gb|OMO61427.1| Zinc finger, CCCH-type [Corchorus capsularis] 267 5e-76
gb|PKU87026.1| Retrovirus-related Pol polyprotein from transposo... 266 8e-76
gb|PKU72052.1| Retrovirus-related Pol polyprotein from transposo... 261 2e-75
gb|PKU83090.1| Retrovirus-related Pol polyprotein from transposo... 264 5e-75
gb|PKU81790.1| Retrovirus-related Pol polyprotein from transposo... 264 5e-75
gb|PKU64191.1| Retrovirus-related Pol polyprotein from transposo... 260 7e-75
gb|AAC35532.1| contains similarity to proteases [Arabidopsis tha... 263 8e-75
emb|CAB40035.1| retrotransposon like protein [Arabidopsis thalia... 263 9e-75
gb|PKU70861.1| Retrovirus-related Pol polyprotein from transposo... 261 1e-74
gb|PKU78363.1| Retrovirus-related Pol polyprotein from transposo... 262 1e-74
gb|PKU68147.1| Retrovirus-related Pol polyprotein from transposo... 260 2e-74
gb|PKU70959.1| Retrovirus-related Pol polyprotein from transposo... 257 3e-74
gb|KYP64614.1| Retrovirus-related Pol polyprotein from transposo... 260 1e-73
gb|PKU78515.1| Retrovirus-related Pol polyprotein from transposo... 259 1e-73
gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas... 259 2e-73
gb|PKU73682.1| Retrovirus-related Pol polyprotein from transposo... 259 2e-73
>gb|OMO99308.1| Integrase, catalytic core [Corchorus capsularis]
Length = 1335
Score = 284 bits (726), Expect = 4e-82
Identities = 153/383 (39%), Positives = 216/383 (56%), Gaps = 30/383 (7%)
Frame = -2
Query: 1060 CGYPYHKANNCFAPDSVIADTAQAFTTMHLTDQNDH-----------------AWYPDTG 932
CGY Y+KA+ + + +F +HL+ H W D+G
Sbjct: 289 CGYRYNKADQ---------NLSTSFAGLHLSSATSHDGFPSTSSTSIGANGEPIWLADSG 339
Query: 931 ATNHMTADPTQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDL 758
AT+HMT++P+ ++ T Y G D V +G+G +L ISH G L I +K L+N+L VP+L
Sbjct: 340 ATSHMTSNPSLLQQSTLYSGNDGVYIGDGKSLRISHIGDSSLCIGFSKFSLTNILFVPEL 399
Query: 757 KKNLLSVSQYTKDNNCCFLFYPWGFVIKDLKSGQILLKGSKHGGLYPIGVXXXXXXXXXX 578
K+NLLS++Q+TKDNNC F +PWGFVIKDL++G++LL G G LY I V
Sbjct: 400 KENLLSIAQFTKDNNCGFFLFPWGFVIKDLRTGKVLLDGPVKGNLYMIPVKAAEKVVTKQ 459
Query: 577 XXXXXXA-----NKMDY--MTWHARLGHPSLSSMNQLSSVLNYSNQ----CNKVCCRSCK 431
N D +TWH RLGHP+ ++QL S S + CN VC +C+
Sbjct: 460 LEQKQKQALFGGNNSDVSGVTWHRRLGHPAGKIISQLHSSKLISPKDVSFCNLVC-EACQ 518
Query: 430 LGKSSKLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWYFPLRR 251
GKS +LPF T T L +H D+WGP+P+ G+R+Y++ VD+ SR+SW +PL++
Sbjct: 519 TGKSKRLPFGYSTRVTSNVLDLIHCDIWGPSPTATVSGYRYYILFVDDYSRYSWIYPLKQ 578
Query: 250 KSEVPSIFIQFITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCPGTPEQ 71
+S+ F F +++ NQF ++KF Q D E V + F GI SCP T EQ
Sbjct: 579 RSDSLVCFQTFKSMVENQFGHKIKFFQCDGAKELVEGVFKQFLDGHGISLRISCPHTHEQ 638
Query: 70 NGLAERKHRHVVETGLSLLAHSS 2
NGLAERKHRH+VE GL++L +S
Sbjct: 639 NGLAERKHRHIVEMGLTMLFQAS 661
>gb|PKU77483.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 994
Score = 280 bits (716), Expect = 6e-82
Identities = 151/364 (41%), Positives = 211/364 (57%), Gaps = 4/364 (1%)
Frame = -2
Query: 1081 SGVYCFRCGYPYHKANNC-FAPDSVIADTAQAFTTMHLTDQNDHA-WYPDTGATNHMTAD 908
+ V C CG P H A +C + DS QA+ TD + +A W+ D+GAT H+TA+
Sbjct: 296 AAVECQICGKPGHSAIHCWYRNDSSYNTPPQAYVA---TDSHQNADWFLDSGATEHLTAN 352
Query: 907 PTQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLKKNLLSVS 734
PTQ++ Y+G V VGNG L I+H G L P KL LSN+L VP L NLLS+
Sbjct: 353 PTQLQNIQPYNGNSQVQVGNGQQLSIAHTGQGLLPTPSRKLQLSNILHVPHLSHNLLSIH 412
Query: 733 QYTKDNNCCFLFYPWGFVIKDLKSGQILLKGSKHGGLYPIGVXXXXXXXXXXXXXXXXAN 554
+ T DN+C L GF IKD ++ ++LL G H GLYPI + +
Sbjct: 413 KLTNDNSCFVLLDANGFAIKDSRTNKLLLHGPHHHGLYPIKISNPSSSDNFNTALLAAST 472
Query: 553 KMDYMTWHARLGHPSLSSMNQLSSVLNYSNQCNKVCCRSCKLGKSSKLPFTRRTNYTDQF 374
TWH RLGHPS S++ LS VL+ S C +C K ++LPF T T+Q
Sbjct: 473 SS--ATWHQRLGHPSTSTLRLLSPVLSTSISSVSSHCNACSKAKCTRLPFPLSTTSTNQC 530
Query: 373 LHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWYFPLRRKSEVPSIFIQFITLMHNQF 194
L +H+DVWGP+PS + + +RFY++ +D+ SR+SW +PL KS+V S FI F ++ QF
Sbjct: 531 LELIHNDVWGPSPSLSMQSYRFYVVFIDDFSRYSWVYPLHHKSDVFSKFIHFQRMVEKQF 590
Query: 193 NRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCPGTPEQNGLAERKHRHVVETGLSLL 14
+K ++TD GGEYV++ + GI +CP TP+QNG+AERKHRH +ET +LL
Sbjct: 591 QTSIKILRTDGGGEYVNNHFKSHLTHHGIQHQITCPYTPQQNGVAERKHRHFLETMRALL 650
Query: 13 AHSS 2
+++
Sbjct: 651 FNAN 654
>gb|PKU65158.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 692
Score = 266 bits (681), Expect = 4e-79
Identities = 147/378 (38%), Positives = 210/378 (55%), Gaps = 10/378 (2%)
Frame = -2
Query: 1105 NASPVGDSSGVYCFRCGYPYHKANNCFAPDS--VIADTAQAFTTMHLTDQNDHAWYPDTG 932
N S G S + C C H A+ C+ + + TA + M +D WY D+G
Sbjct: 262 NNSKTGSKSSIICQICTKRGHSADVCWHRHNSKYVPPTANSQALMAASDITSTDWYLDSG 321
Query: 931 ATNHMTADPTQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDL 758
A++HMT + + + Y+G D V+VG+G +PI+H G L P KL LSN+L +PD+
Sbjct: 322 ASSHMTNNQDNMTQSSNYNGSDQVIVGDGRAIPIAHSGAGILPTPERKLQLSNLLHLPDI 381
Query: 757 KKNLLSVSQYTKDNNCCFLFYPWGFVIKDLKSGQILLKGSKHGGLYPIGVXXXXXXXXXX 578
NL+S+S KDNN F P G+ +KDL++ ++LL+G GLYPI +
Sbjct: 382 SHNLISISNLVKDNNISISFDPNGYHVKDLQTHRVLLRGPCRAGLYPIKIKKFEQSKTAL 441
Query: 577 XXXXXXANKMDYMTWHARLGHP------SLSSMNQLSSVLNYSNQCNKVCCRSCKLGKSS 416
+ WH RLGHP ++S N +++ +N CN SC KS
Sbjct: 442 NT-----SSRHLPNWHQRLGHPHQRILATISKQNPSLCIVDKNNICN-----SCNACKSH 491
Query: 415 KLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWYFPLRRKSEVP 236
KL F R N + L LHSDVWGP+P + +GF +YL+I+D+ SR++W FP K+EV
Sbjct: 492 KLEFPRSINRKNSPLALLHSDVWGPSPVQSQQGFLYYLLILDDYSRYAWVFPFSHKTEVS 551
Query: 235 SIFIQFITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCPGTPEQNGLAE 56
IFI FIT + +V+ V+TD G E+V+HK + F ++GI SCP TPEQNG AE
Sbjct: 552 QIFINFITFIEKYTKHQVQAVRTDGGTEFVNHKFQSFLTSKGIQHQRSCPYTPEQNGAAE 611
Query: 55 RKHRHVVETGLSLLAHSS 2
RKHRH+++T +LL +S
Sbjct: 612 RKHRHIIDTTRTLLHTAS 629
>gb|PKU59623.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 519
Score = 261 bits (668), Expect = 7e-79
Identities = 140/358 (39%), Positives = 207/358 (57%), Gaps = 2/358 (0%)
Frame = -2
Query: 1081 SGVYCFRCGYPYHKANNCFAPDSVIADTAQAFTTMHLTDQNDHAWYPDTGATNHMTADPT 902
+ V C C H A +C+ + + W+ DTGA++H+TAD T
Sbjct: 111 NSVVCQICAKQGHSAVSCWYRAYLSYQQSPRALIAQEEKSTSGDWFLDTGASSHLTADTT 170
Query: 901 QVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLKKNLLSVSQY 728
Q++ Y +V VG+GS LPI++ G L P L LS++L VP L NL+SVS+
Sbjct: 171 QLQSAQPYTSTSNVQVGDGSQLPIANSGKGILPTPSRVLQLSHILHVPKLTHNLISVSRL 230
Query: 727 TKDNNCCFLFYPWGFVIKDLKSGQILLKGSKHGGLYPIGVXXXXXXXXXXXXXXXXANKM 548
KDN C +F GF++KD ++ QILL+G H GLYPI +
Sbjct: 231 LKDNLCYIIFNKSGFLLKDSQTHQILLQGPSHHGLYPINLPLSVFT-----------TPS 279
Query: 547 DYMTWHARLGHPSLSSMNQLSSVLNYSNQCNKVCCRSCKLGKSSKLPFTRRTNYTDQFLH 368
++ WH RLGHPS ++ +LS++L +S+ +K C SC KS + PF+ + T Q L
Sbjct: 280 TFIHWHMRLGHPSPTTQRRLSALLKFSSP-SKHHCDSCVRAKSHRFPFSLSKSTTKQCLE 338
Query: 367 TLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWYFPLRRKSEVPSIFIQFITLMHNQFNR 188
LHSD+WGP+ +++ +++YL++VD+ +RF W FPL+ KS+V +F F L+ QF
Sbjct: 339 LLHSDIWGPSSILSSQCYKYYLLLVDDFTRFYWVFPLKSKSDVLPVFQNFKILVETQFQT 398
Query: 187 RVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCPGTPEQNGLAERKHRHVVETGLSLL 14
++K QTD+GGE+++ ++F A GI SCP TP+QNGLAERKHRH++ET SL+
Sbjct: 399 KIKQFQTDNGGEFINQSFKEFLANSGITHRLSCPYTPQQNGLAERKHRHLLETMRSLM 456
>gb|OMO61427.1| Zinc finger, CCCH-type [Corchorus capsularis]
Length = 1996
Score = 267 bits (683), Expect = 5e-76
Identities = 147/374 (39%), Positives = 206/374 (55%), Gaps = 7/374 (1%)
Frame = -2
Query: 1105 NASPVGDSSGVYCFRCGYPYHKANNCFAP--DSVIADTAQAFTTMHLTDQNDHAWYPDTG 932
N+ + + C C P H A +C+ + ++ A+ M L D++W+PDT
Sbjct: 244 NSQDDSGKTNIVCQICKLPKHTALDCYNRFNHAYQSEKARQAMAMKLDGPIDNSWFPDTA 303
Query: 931 ATNHMTADPTQVEGKTFYHGQDSVLVGNGSTLPISHFGHLTIP--HTKLHLSNVLVVPDL 758
A+ HMTADP + + YHG D +L+G+GS L ISH G + IP L L+NVLVVP++
Sbjct: 304 ASAHMTADPGILSSLSQYHGCDKILIGDGSLLDISHTGTMDIPVLDGNLQLNNVLVVPEI 363
Query: 757 KKNLLSVSQYTKDNNCCFLFYPWGFVIKDLKSGQILLKGSKHGGLYPIGVXXXXXXXXXX 578
KKNLLS Q T D F G VIKD ++G+++ KGSK G+Y +G
Sbjct: 364 KKNLLSAGQLTDDYPYTCEFSSAGVVIKDRETGKMIAKGSKQDGVYALGTKEKAAFFSTR 423
Query: 577 XXXXXXANKMDYMTWHARLGHPSLSSMNQLS-SVLNYSNQCNKV--CCRSCKLGKSSKLP 407
WH RLGHP + L + L S NKV C SC++ K+ +LP
Sbjct: 424 FKTASDE------VWHQRLGHPQPKVVELLKKNKLITSTSGNKVEHFCDSCQMAKACRLP 477
Query: 406 FTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWYFPLRRKSEVPSIF 227
F + D + +H D+WG AP + + F++Y+I VDE SRF+WYFPL+ KS+ F
Sbjct: 478 FILSNEFCDTPMDVIHCDLWGAAPVASFQKFKYYVIFVDEYSRFTWYFPLKHKSDFFQCF 537
Query: 226 IQFITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCPGTPEQNGLAERKH 47
+ F + NQF +++K Q D GGE+ + F GI ++CP TPEQNGL ERKH
Sbjct: 538 LNFHAYVENQFGKKIKVFQCDEGGEFTDGRFVQFLQNNGIKLQYACPKTPEQNGLVERKH 597
Query: 46 RHVVETGLSLLAHS 5
R++VE GL+LL HS
Sbjct: 598 RNIVELGLTLLFHS 611
>gb|PKU87026.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 1273
Score = 266 bits (679), Expect = 8e-76
Identities = 148/380 (38%), Positives = 211/380 (55%), Gaps = 19/380 (5%)
Frame = -2
Query: 1084 SSGVYCFRCGYPYHKANNCF--------------APDSVIADTAQAFTTMHLTDQNDHAW 947
+S + C C H NC+ +P +++A + QA T W
Sbjct: 250 TSSIICQICNKKGHTTANCWHRMNSQYVPKSGNSSPKAMVAQSEQATTD----------W 299
Query: 946 YPDTGATNHMTADPTQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVL 773
Y D+GA++H+T ++ Y D + VG+G ++PI+H G L P KL+LS +L
Sbjct: 300 YLDSGASSHLTNSLNNLQISAPYTRNDGITVGDGRSVPIAHSGAGILPTPSRKLYLSQLL 359
Query: 772 VVPDLKKNLLSVSQYTKDNNCCFLFYPWGFVIKDLKSGQILLKGSKHGGLYPIGVXXXXX 593
+P L NLLS+SQ T+DNN +F P GF +KDLK+ Q+LLKG H GLYPI
Sbjct: 360 HIPKLHYNLLSISQLTRDNNISIVFDPLGFTLKDLKTNQVLLKGPCHKGLYPINSLSSGA 419
Query: 592 XXXXXXXXXXXANKMDYMTWHARLGHP---SLSSMNQLSSVLNYSNQCNKVCCRSCKLGK 422
+N WH RLGHP +L ++ + + LN S + C SC+ K
Sbjct: 420 TSTALSATANGSN-----IWHQRLGHPHKRALETIAKSNPSLNIS--VSDSICNSCRANK 472
Query: 421 SSKLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWYFPLRRKSE 242
KL F + N +++ L +HSDVWGP+P + + F++Y++ VD+ SRF+W FP+ KSE
Sbjct: 473 GHKLLFEKSENRSNKILELIHSDVWGPSPVTSNQSFQYYVLFVDDFSRFTWLFPMIHKSE 532
Query: 241 VPSIFIQFITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCPGTPEQNGL 62
V +IFI F + N + ++K ++TD G EYV+H L+ F GI SCP TPEQNG+
Sbjct: 533 VTNIFINFKAKIENLTSHKIKCLRTDGGTEYVNHHLKQFLIQHGIRHQISCPYTPEQNGM 592
Query: 61 AERKHRHVVETGLSLLAHSS 2
AERKHRHV+ET LL +SS
Sbjct: 593 AERKHRHVIETTRKLLFNSS 612
>gb|PKU72052.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 956
Score = 261 bits (668), Expect = 2e-75
Identities = 138/363 (38%), Positives = 204/363 (56%), Gaps = 3/363 (0%)
Frame = -2
Query: 1081 SGVYCFRCGYPYHKANNC-FAPDSVIADTAQAFTTMHLTDQNDHAWYPDTGATNHMTADP 905
S V C C H A C + D QAF + +D W+ DTGAT+H+T++
Sbjct: 93 SSVQCQICNRVGHSAFQCWYRTDLNYQPVQQAFLSADAPSSDD--WFLDTGATSHLTSNL 150
Query: 904 TQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLKKNLLSVSQ 731
++ Y G + VGNG LPI++ G L P KL LS +L VP L NLLSV++
Sbjct: 151 QHLQTPQTYTGSSQIQVGNGQLLPIANSGQGLLPTPSRKLQLSQILHVPHLSHNLLSVNK 210
Query: 730 YTKDNNCCFLFYPWGFVIKDLKSGQILLKGSKHGGLYPIGVXXXXXXXXXXXXXXXXANK 551
T +N+C +F+ GF IKD ++ QILL+G GLYPI +
Sbjct: 211 LTNENSCFIVFHANGFFIKDARTNQILLQGPCRQGLYPIELRPAASYSSTTHSTALHTKM 270
Query: 550 MDYMTWHARLGHPSLSSMNQLSSVLNYSNQCNKVCCRSCKLGKSSKLPFTRRTNYTDQFL 371
+D + H RLGHPS S++ LS+ + C +C KS +LPF+ + T L
Sbjct: 271 IDPVLLHQRLGHPSPSTLQLLSAYFPTKRLVSSFHCSACLRAKSHRLPFSLSASKTKNVL 330
Query: 370 HTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWYFPLRRKSEVPSIFIQFITLMHNQFN 191
+H DVWGP+P + G+++YL+ VD+ + +SW +PL+ KSE + F+ F + + NQFN
Sbjct: 331 ELIHCDVWGPSPIVSNNGYKYYLLFVDDFTHYSWVYPLQLKSEAFTQFLHFKSTVENQFN 390
Query: 190 RRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCPGTPEQNGLAERKHRHVVETGLSLLA 11
+ +K ++TD GGE+V+ + + GI+ +CP TP+QNG+AERKHRH++ET SLL
Sbjct: 391 KHIKTLRTDGGGEFVNKIFNAYLSRAGIVHQLTCPYTPQQNGVAERKHRHLIETVRSLLF 450
Query: 10 HSS 2
H++
Sbjct: 451 HAN 453
>gb|PKU83090.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 1360
Score = 264 bits (674), Expect = 5e-75
Identities = 143/352 (40%), Positives = 200/352 (56%), Gaps = 3/352 (0%)
Frame = -2
Query: 1048 YHKANNCFAPDSVIADTAQAFTTMHLTDQNDHAWYPDTGATNHMTADPTQVEGKTFYHGQ 869
+H+ N + P S +TA A T T W+ D+GA++H+T + Y+G
Sbjct: 291 WHRLNENYVPRS--RNTALAATQERPTSN----WFLDSGASSHLTNSLDNLSVNDPYNGS 344
Query: 868 DSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLKKNLLSVSQYTKDNNCCFLFY 695
DSV +G+G ++ I+H G L H KL+L+ +L +P+LK NLLS+S+ T+DNN C +F
Sbjct: 345 DSVTLGDGRSMSIAHSGSGLLNTTHRKLNLAKILHIPELKYNLLSISKLTRDNNICIVFE 404
Query: 694 PWGFVIKDLKSGQILLKGSKHGGLYPIGVXXXXXXXXXXXXXXXXANKMDYMTWHARLGH 515
P GFV KD+++ Q LL+G H GLYPI + K M WH RLGH
Sbjct: 405 PNGFVFKDIQTQQTLLRGPCHDGLYPIQLHPAKTTTSALTAI-----KKPMMPWHNRLGH 459
Query: 514 PSLSSMNQLSSVLNYSN-QCNKVCCRSCKLGKSSKLPFTRRTNYTDQFLHTLHSDVWGPA 338
P +N +S N NK C SC L K KLPF N L +HSDVWGPA
Sbjct: 460 PHFKILNLVSKCNPCLNIDFNKFSCSSCILAKGHKLPFESSENRRHIPLEVVHSDVWGPA 519
Query: 337 PSPATEGFRFYLIIVDESSRFSWYFPLRRKSEVPSIFIQFITLMHNQFNRRVKFVQTDSG 158
P + +G+RFY++ +D+ +RF+W +P++ K+EV SIF F + + ++K +++D G
Sbjct: 520 PVESLQGYRFYVLFIDDCTRFTWLYPMKHKNEVTSIFTNFKNYVEKLTSYQIKCLRSDGG 579
Query: 157 GEYVSHKLRDFFATQGIIQLFSCPGTPEQNGLAERKHRHVVETGLSLLAHSS 2
EY +H F GI SCP TPEQNGLAERKHRH++ET SLL +S
Sbjct: 580 TEYTNHGFTQFLTANGITHQISCPYTPEQNGLAERKHRHILETTRSLLFTAS 631
>gb|PKU81790.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 1372
Score = 264 bits (674), Expect = 5e-75
Identities = 146/378 (38%), Positives = 213/378 (56%), Gaps = 10/378 (2%)
Frame = -2
Query: 1105 NASPVGDSSGVYCFRCGYPYHKANNCFAPDS--VIADTAQAFTTMHLTDQNDHAWYPDTG 932
N S G S + C C H A+ C+ + + TA + M +D WY D+G
Sbjct: 262 NNSKPGSKSSIICQICTKRGHSADICWHRHNSKYVPPTANSQALMAASDITSTDWYLDSG 321
Query: 931 ATNHMTADPTQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDL 758
A++HMT + + + Y+G D V+VG+G +PI+H G L P KL LSN+L +P++
Sbjct: 322 ASSHMTNNQDNMTQSSNYNGSDQVIVGDGRAIPIAHSGAGILPTPERKLQLSNLLHLPNI 381
Query: 757 KKNLLSVSQYTKDNNCCFLFYPWGFVIKDLKSGQILLKGSKHGGLYPIGVXXXXXXXXXX 578
NL+S+S KDNN F P G+ +KDL++ ++LL+G GLYPI +
Sbjct: 382 SHNLISISNLVKDNNISISFDPNGYHVKDLQTHRVLLQGPCRAGLYPIKIKKSELSKTAL 441
Query: 577 XXXXXXANKMDYMTWHARLGHP------SLSSMNQLSSVLNYSNQCNKVCCRSCKLGKSS 416
+ WH RLGHP ++S N +++ +N CN SC KS
Sbjct: 442 NTSLRHSPN-----WHQRLGHPHQRILATISKQNPSLCIVDRNNICN-----SCNACKSH 491
Query: 415 KLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWYFPLRRKSEVP 236
KL F+R N + L LHSDVWGP+P + +GF++YL+I+D+ SR++W FP K+EVP
Sbjct: 492 KLEFSRSINRKNSPLALLHSDVWGPSPVQSQQGFQYYLLILDDYSRYAWVFPFSYKTEVP 551
Query: 235 SIFIQFITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCPGTPEQNGLAE 56
IFI FIT + +V+ V+TD G E+V++K + F ++GI SCP TPEQNG AE
Sbjct: 552 QIFINFITFIEKYTKHQVQAVRTDGGTEFVNYKFQTFLTSKGIQHQRSCPYTPEQNGAAE 611
Query: 55 RKHRHVVETGLSLLAHSS 2
RKHRH+++T +LL +S
Sbjct: 612 RKHRHIIDTTRTLLHTAS 629
>gb|PKU64191.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 962
Score = 260 bits (665), Expect = 7e-75
Identities = 142/359 (39%), Positives = 200/359 (55%), Gaps = 3/359 (0%)
Frame = -2
Query: 1069 CFRCGYPYHKANNC-FAPDSVIADTAQAFTTMHLTDQNDHAWYPDTGATNHMTADPTQVE 893
C CG P H A +C + D+ QA+ T D WY D+GAT H+T+ P +
Sbjct: 273 CKICGKPRHSAIHCWYRHDTSYTTLPQAYITTDSAPAVD--WYLDSGATEHLTSTPAHLN 330
Query: 892 GKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLKKNLLSVSQYTKD 719
Y G V VGNG LPI++ G L P+ KLHL +VL P L NLLSV + T D
Sbjct: 331 NIQHYTGSSQVQVGNGQQLPIANTGQGLLPTPYRKLHLPHVLHFPHLFHNLLSVHKLTND 390
Query: 718 NNCCFLFYPWGFVIKDLKSGQILLKGSKHGGLYPIGVXXXXXXXXXXXXXXXXANKMDYM 539
N+C L GF IKD ++ + LL G GLYPI + +
Sbjct: 391 NSCFVLLDAHGFAIKDSRTNKTLLHGPTQHGLYPIKLPQSSASSITALASSTAPS----F 446
Query: 538 TWHARLGHPSLSSMNQLSSVLNYSNQCNKVCCRSCKLGKSSKLPFTRRTNYTDQFLHTLH 359
WH RLGHPS S LSS+L +S + C +C K ++LPF+ + T + L +H
Sbjct: 447 IWHQRLGHPSSSIQQGLSSLLLFSPSFVNLHCNACSQAKCTRLPFSLSQSTTTKCLELVH 506
Query: 358 SDVWGPAPSPATEGFRFYLIIVDESSRFSWYFPLRRKSEVPSIFIQFITLMHNQFNRRVK 179
SDVWG +P+P+ + + +Y++ +D+ SR++W +PL KSEV +IF+QF L+ QF +K
Sbjct: 507 SDVWGSSPTPSMQAYLYYVVFIDDYSRYTWIYPLCHKSEVYTIFLQFQALVEKQFQHPIK 566
Query: 178 FVQTDSGGEYVSHKLRDFFATQGIIQLFSCPGTPEQNGLAERKHRHVVETGLSLLAHSS 2
++TD GGEYV+ ++ GII SCP TP+QNG+AE+KHRH++ T +LL +S
Sbjct: 567 ILRTDGGGEYVNIIFKNHLTKSGIIYQISCPYTPQQNGVAEQKHRHLLATVRALLLTAS 625
>gb|AAC35532.1| contains similarity to proteases [Arabidopsis thaliana]
Length = 1392
Score = 263 bits (673), Expect = 8e-75
Identities = 145/371 (39%), Positives = 205/371 (55%), Gaps = 9/371 (2%)
Frame = -2
Query: 1090 GDSSGVYCFRCGYPYHKANNC---FAPDSVIADTAQAFTTMHLTDQND---HAWYPDTGA 929
G+ S C C H A C F + + D AF M ++DQN H W PD+ A
Sbjct: 274 GNGSKPTCQICRKYGHSAFKCYTRFEENYLPEDLPNAFAAMRVSDQNQASSHEWLPDSAA 333
Query: 928 TNHMTADPTQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLK 755
T H+T ++ Y G DSV+VGNG LPI+H G L I L L +VLV P +
Sbjct: 334 TAHITNTTDGLQNSQTYSGDDSVIVGNGDFLPITHIGTIPLNISQGTLPLEDVLVCPGIT 393
Query: 754 KNLLSVSQYTKDNNCCFLFYPWGFVIKDLKSGQILLKGSKHGGLYPIGVXXXXXXXXXXX 575
K+LLSVS+ T D C F F VIKD ++ Q+L +G+KH GLY +
Sbjct: 394 KSLLSVSKLTDDYPCSFTFDSDSVVIKDKRTQQLLTQGNKHKGLYVL------KDVPFQT 447
Query: 574 XXXXXANKMDYMTWHARLGHPSLSSMNQL-SSVLNYSNQCNKVCCRSCKLGKSSKLPFTR 398
D WH RLGHP+ + L + N+ + C +C++GK +LPF
Sbjct: 448 YYSTRQQSSDDEVWHQRLGHPNKEVLQHLIKTKAIVVNKTSSNMCEACQMGKVCRLPFVA 507
Query: 397 RTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWYFPLRRKSEVPSIFIQF 218
+ + L +H D+WGPAP + +GF++Y+I +D SRF+W++PL+ KS+ S+F+ F
Sbjct: 508 SEFVSSRPLERIHCDLWGPAPVTSAQGFQYYVIFIDNYSRFTWFYPLKLKSDFFSVFVLF 567
Query: 217 ITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCPGTPEQNGLAERKHRHV 38
L+ NQ+ ++ Q D GGE+VS+K A+ GI QL SCP TP+QNG+AER+HR++
Sbjct: 568 QQLVENQYQHKIAMFQCDGGGEFVSYKFVAHLASCGIKQLISCPHTPQQNGIAERRHRYL 627
Query: 37 VETGLSLLAHS 5
E GLSL+ HS
Sbjct: 628 TELGLSLMFHS 638
>emb|CAB40035.1| retrotransposon like protein [Arabidopsis thaliana]
emb|CAB81170.1| retrotransposon like protein [Arabidopsis thaliana]
Length = 1515
Score = 263 bits (673), Expect = 9e-75
Identities = 145/371 (39%), Positives = 205/371 (55%), Gaps = 9/371 (2%)
Frame = -2
Query: 1090 GDSSGVYCFRCGYPYHKANNC---FAPDSVIADTAQAFTTMHLTDQND---HAWYPDTGA 929
G+ S C C H A C F + + D AF M ++DQN H W PD+ A
Sbjct: 271 GNGSKPTCQICRKYGHSAFKCYTRFEENYLPEDLPNAFAAMRVSDQNQASSHEWLPDSAA 330
Query: 928 TNHMTADPTQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLK 755
T H+T ++ Y G DSV+VGNG LPI+H G L I L L +VLV P +
Sbjct: 331 TAHITNTTDGLQNSQTYSGDDSVIVGNGDFLPITHIGTIPLNISQGTLPLEDVLVCPGIT 390
Query: 754 KNLLSVSQYTKDNNCCFLFYPWGFVIKDLKSGQILLKGSKHGGLYPIGVXXXXXXXXXXX 575
K+LLSVS+ T D C F F VIKD ++ Q+L +G+KH GLY +
Sbjct: 391 KSLLSVSKLTDDYPCSFTFDSDSVVIKDKRTQQLLTQGNKHKGLYVL------KDVPFQT 444
Query: 574 XXXXXANKMDYMTWHARLGHPSLSSMNQL-SSVLNYSNQCNKVCCRSCKLGKSSKLPFTR 398
D WH RLGHP+ + L + N+ + C +C++GK +LPF
Sbjct: 445 YYSTRQQSSDDEVWHQRLGHPNKEVLQHLIKTKAIVVNKTSSNMCEACQMGKVCRLPFVA 504
Query: 397 RTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWYFPLRRKSEVPSIFIQF 218
+ + L +H D+WGPAP + +GF++Y+I +D SRF+W++PL+ KS+ S+F+ F
Sbjct: 505 SEFVSSRPLERIHCDLWGPAPVTSAQGFQYYVIFIDNYSRFTWFYPLKLKSDFFSVFVLF 564
Query: 217 ITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCPGTPEQNGLAERKHRHV 38
L+ NQ+ ++ Q D GGE+VS+K A+ GI QL SCP TP+QNG+AER+HR++
Sbjct: 565 QQLVENQYQHKIAMFQCDGGGEFVSYKFVAHLASCGIKQLISCPHTPQQNGIAERRHRYL 624
Query: 37 VETGLSLLAHS 5
E GLSL+ HS
Sbjct: 625 TELGLSLMFHS 635
>gb|PKU70861.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 1047
Score = 261 bits (666), Expect = 1e-74
Identities = 144/358 (40%), Positives = 203/358 (56%), Gaps = 9/358 (2%)
Frame = -2
Query: 1048 YHKANNCFAPDSVIADTAQAFTTMHLTD-QNDHAWYPDTGATNHMTADPTQVEGKTFYHG 872
+H+ N + P +AF+ TD +N + WY D+GA+ HMT + + T Y G
Sbjct: 286 WHRLNINYVPSQPHDKQPKAFSAT--TDSKNPNEWYLDSGASAHMTNNTDNLTTSTSYQG 343
Query: 871 QDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLKKNLLSVSQYTKDNNCCFLF 698
DS+ +G+GS +PI+H G L P KL LSN+L +P++ NL+S+S KDNN F
Sbjct: 344 SDSITIGDGSHIPIAHSGTGILPTPFRKLKLSNLLHIPNISYNLVSISNLVKDNNISITF 403
Query: 697 YPWGFVIKDLKSGQILLKGSKHGGLYPIGVXXXXXXXXXXXXXXXXANKMDYMTWHARLG 518
P GF +KD+ +G I+L+G GLYPI ++ WH RLG
Sbjct: 404 NPNGFTMKDMTTGCIILRGPYKDGLYPIATSHTSQTALQA-------SRSSSAVWHNRLG 456
Query: 517 HPSLSSMNQLSSVLNY------SNQCNKVCCRSCKLGKSSKLPFTRRTNYTDQFLHTLHS 356
HP+ +M ++S S QC V C SCK K+PF++ N L LHS
Sbjct: 457 HPNQRTMRLIASAYPQLHISISSFQC--VACSSCK---GHKMPFSKSCNRMKTPLALLHS 511
Query: 355 DVWGPAPSPATEGFRFYLIIVDESSRFSWYFPLRRKSEVPSIFIQFITLMHNQFNRRVKF 176
DVWGP+P + +GFR+Y+ +D+ SR++W FP KS+VP IFI F T + NQ N ++K
Sbjct: 512 DVWGPSPVTSNQGFRYYVTFIDDFSRYTWIFPCSNKSDVPHIFINFKTFIENQTNYKIKI 571
Query: 175 VQTDSGGEYVSHKLRDFFATQGIIQLFSCPGTPEQNGLAERKHRHVVETGLSLLAHSS 2
++TD G EY + L F ++ GI SCP TPEQNG+AERKHRH++ET +LL +S
Sbjct: 572 LRTDGGTEYRNITLSKFLSSNGIQHQLSCPYTPEQNGVAERKHRHIIETTRTLLHQAS 629
>gb|PKU78363.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 1191
Score = 262 bits (669), Expect = 1e-74
Identities = 148/377 (39%), Positives = 207/377 (54%), Gaps = 14/377 (3%)
Frame = -2
Query: 1102 ASPVGDSSGVYCFRCGYPYHKANNC-------FAPDSVIADTAQAFTTMHLTDQNDHA-- 950
A+ SS V C C H A C + P QA +++ N +
Sbjct: 112 ANRTATSSTVTCQICKKKGHSAEACWHRMNPNYVPSQPSNKNNQA---LYVNSDNTTSVD 168
Query: 949 WYPDTGATNHMTADPTQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNV 776
WY D+GA+ HMT + Y+G D V VG+G +PI+H G L P KL LS +
Sbjct: 169 WYLDSGASTHMTNSADNITTPNVYNGTDQVTVGDGRKVPIAHSGTGLLPTPSRKLFLSQI 228
Query: 775 LVVPDLKKNLLSVSQYTKDNNCCFLFYPWGFVIKDLKSGQILLKGSKHGGLYPIGVXXXX 596
L P + +NLLSVS +DN+ +F GFV KD+KS +ILLKG GLYP+
Sbjct: 229 LHTPSISQNLLSVSNLVRDNDISIVFDSTGFVFKDMKSKRILLKGPCKNGLYPLAGFTQS 288
Query: 595 XXXXXXXXXXXXANKMDYMTWHARLGHPS---LSSMNQLSSVLNYSNQCNKVCCRSCKLG 425
++ WH R+GHPS L +++ + L S N C SCKL
Sbjct: 289 DTHRGLTAVSQSNSR-----WHERIGHPSNHILQHISKKNPDLRISFSSN---CTSCKLC 340
Query: 424 KSSKLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWYFPLRRKS 245
K+ KL F +N + L +HSDVWGP+P P+ +GFR+Y+I VD+ SRF+W+FPL KS
Sbjct: 341 KAHKLKFQDSSNRKNYPLELIHSDVWGPSPVPSHQGFRYYIIFVDDYSRFTWFFPLMFKS 400
Query: 244 EVPSIFIQFITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCPGTPEQNG 65
+ +F+ F+ + Q NR++K ++TD GGEY++ + + F +GI+ SCP TPEQNG
Sbjct: 401 DATHVFMNFVNFIERQTNRKIKVLRTDGGGEYINQQFQQFTRAKGILHQTSCPYTPEQNG 460
Query: 64 LAERKHRHVVETGLSLL 14
LAERKHRH++ET +LL
Sbjct: 461 LAERKHRHIMETTRTLL 477
>gb|PKU68147.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 1093
Score = 260 bits (665), Expect = 2e-74
Identities = 142/353 (40%), Positives = 207/353 (58%), Gaps = 4/353 (1%)
Frame = -2
Query: 1048 YHKANNCFAPDSVIADTAQAFTTMHLTDQNDHAWYPDTGATNHMTADPTQVEGKTFYHGQ 869
+H+ N + P S A+ A + +D N+ W+ D+GA+ H+T + T Y G
Sbjct: 132 WHRLNVQYVPSSRTANRA----LVAHSDNNESNWFLDSGASTHLTNSLDNLSISTPYQGT 187
Query: 868 DSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLKKNLLSVSQYTKDNNCCFLFY 695
D++ +G+GS++ ISH G L P KLHLSN+L P + NLLS+SQ TKDNN +F
Sbjct: 188 DNITIGDGSSVNISHTGAGILPTPSRKLHLSNILHSPLIHYNLLSISQLTKDNNVSIIFD 247
Query: 694 PWGFVIKDLKSGQILLKGSKHGGLYPIGVXXXXXXXXXXXXXXXXANKMDYMTWHARLGH 515
P GF++KD+ + ++LL+G + GLY I + + +WH RLGH
Sbjct: 248 PTGFMLKDMTNNKVLLRGPCNAGLYTIPIEHTTMNKALAV------HTSSTSSWHHRLGH 301
Query: 514 PSLSSMNQLSSVLNYSNQCNK--VCCRSCKLGKSSKLPFTRRTNYTDQFLHTLHSDVWGP 341
P + LSS N + + K C SC + K KL F + L +HSDVWGP
Sbjct: 302 PHQQIYDLLSSC-NPNLKLGKHIFSCNSCAVSKCHKLKFEHNKHRQVSTLDIIHSDVWGP 360
Query: 340 APSPATEGFRFYLIIVDESSRFSWYFPLRRKSEVPSIFIQFITLMHNQFNRRVKFVQTDS 161
AP+ + +G+R+Y+I VD++SRF+W +PLR KSEV + FI F T + + ++K ++TD
Sbjct: 361 APAVSHQGYRYYIIFVDDNSRFTWLYPLRHKSEVLNTFINFKTQVEKYTSHQIKVLRTDG 420
Query: 160 GGEYVSHKLRDFFATQGIIQLFSCPGTPEQNGLAERKHRHVVETGLSLLAHSS 2
G EY++++ DF T GI+ SCP TPEQNGLAERKHRH++ET +LL +S
Sbjct: 421 GMEYMNNQFSDFLRTHGIVHQTSCPYTPEQNGLAERKHRHIIETTRALLFTAS 473
>gb|PKU70959.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 863
Score = 257 bits (657), Expect = 3e-74
Identities = 141/365 (38%), Positives = 211/365 (57%), Gaps = 9/365 (2%)
Frame = -2
Query: 1069 CFRCGYPYHKANNCFAP--DSVIADTAQAFTTMHLTDQNDHA-WYPDTGATNHMTADPTQ 899
C C H ANNC+ ++ + + T +++T+ N + WY D+GAT H+T D +
Sbjct: 273 CQICNKKGHSANNCWHRYNNNYVPPPPKNNTALNVTNDNQNPDWYLDSGATAHLTNDISN 332
Query: 898 VE-GKTF-YHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLKKNLLSVSQ 731
+ G Y+G D++ +G+GST+PI+H G L P KL LS +L +P + LLS+
Sbjct: 333 LTLGDAIPYNGDDNIQIGDGSTIPIAHKGSGLLPTPTRKLILSQLLHIPQISHKLLSIYH 392
Query: 730 YTKDNNCCFLFYPWGFVIKDLKSGQILLKGSKHGGLYPIGVXXXXXXXXXXXXXXXXANK 551
TKDN F +GF+IKD K+ Q LL+G GLYPI
Sbjct: 393 LTKDNKIAITFDEFGFLIKDTKTNQTLLQGPSRKGLYPIPTTSHKLKPTLIAIH------ 446
Query: 550 MDYMTWHARLGHPSLSSMNQLSSVLNYSNQCNKVC--CRSCKLGKSSKLPFTRRTNYTDQ 377
TWH RLGHP++ +M +S+ N++ Q K C +CK+ KS +L F + +
Sbjct: 447 QSSTTWHNRLGHPNIRTMTMISNQ-NHTLQIPKPIDNCTACKMAKSHRLQFPVSNSRSHV 505
Query: 376 FLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWYFPLRRKSEVPSIFIQFITLMHNQ 197
L LHSDVWGPAP + +G+++YL+++D+ SRF+W FP++ K EV FI F T++ Q
Sbjct: 506 LLELLHSDVWGPAPITSYQGYKYYLLLLDDYSRFTWVFPIKSKCEVADTFIMFHTMIEKQ 565
Query: 196 FNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCPGTPEQNGLAERKHRHVVETGLSL 17
F +VK +++D G EY++ L+++ GI+ SCP TPEQNG AERKHRH++ET +L
Sbjct: 566 FPYKVKQLRSDGGSEYINKTLQNYLQKHGIVHQISCPYTPEQNGTAERKHRHLIETTRTL 625
Query: 16 LAHSS 2
+ +S
Sbjct: 626 INTAS 630
>gb|KYP64614.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1291
Score = 260 bits (664), Expect = 1e-73
Identities = 140/362 (38%), Positives = 211/362 (58%), Gaps = 7/362 (1%)
Frame = -2
Query: 1069 CFRCGYPYHKANNC---FAPDSVIADTAQAFTTMHLTD-QNDHAWYPDTGATNHMTADPT 902
C C H AN C + S A+ AQAF D N WY DTGAT+HMT +
Sbjct: 175 CQICREQGHYANKCPVRWDRSSESANLAQAFAASCSVDTSNQSDWYMDTGATSHMTPSSS 234
Query: 901 QVEGKTFYHGQDSVLVGNGSTLPISHFGHLTIPHTKLHLSNVLVVPDLKKNLLSVSQYTK 722
Q+ Y+G D V VGNG++L I+H G ++ H + LS+VLVVP+L KNL+SVS+ T+
Sbjct: 235 QLTDSQNYNGTDRVFVGNGTSLNITHVGSRSLSHI-VPLSDVLVVPNLTKNLVSVSKLTR 293
Query: 721 DNNCCFLFYPWGFVIKDLKSGQILLKGSKHGGLYPIGVXXXXXXXXXXXXXXXXANKMDY 542
DN+ +F FVI++ K+G++L +G GLY + + +
Sbjct: 294 DNHAKAIFVDDSFVIQNRKTGRVLARGRCDQGLYVMDQGPQALLTTSSSLP-----RASF 348
Query: 541 MTWHARLGHPSLSSMNQLSS--VLNYSNQCNK-VCCRSCKLGKSSKLPFTRRTNYTDQFL 371
WH+RLGH + +N+L+ LN S+ K +CC +C++ KS +L F L
Sbjct: 349 ELWHSRLGHVNFDVINKLNKQGYLNVSSILPKPICCTTCQMAKSKRLVFYDNNKRASAVL 408
Query: 370 HTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWYFPLRRKSEVPSIFIQFITLMHNQFN 191
+H D+WGP+P + G+ +++I VD+ SRF+W++PLR KS+ + ++F + NQF+
Sbjct: 409 DLIHCDLWGPSPVASVAGYSYFVIFVDDFSRFTWFYPLRHKSDFYDVLVRFKVFVENQFS 468
Query: 190 RRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCPGTPEQNGLAERKHRHVVETGLSLLA 11
R +K Q+D+G E+ ++K++D FA+ G++ FSCP T QNG ERKHRHV+E GL++L
Sbjct: 469 RFIKVFQSDNGTEFTNNKVQDLFASSGVLHRFSCPHTQAQNGRVERKHRHVLEIGLAMLY 528
Query: 10 HS 5
S
Sbjct: 529 QS 530
>gb|PKU78515.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 1165
Score = 259 bits (662), Expect = 1e-73
Identities = 139/375 (37%), Positives = 209/375 (55%), Gaps = 11/375 (2%)
Frame = -2
Query: 1105 NASPVGDSSGVYCFRCGYP----YHKANNCFAPDSVIADTAQAFTTMHLTDQNDHAWYPD 938
N++P ++ C + G+ +H+ N + P SV T + +N W+ D
Sbjct: 62 NSNPNASTTCQICLKKGHSAFSCWHRLNQNYKPSSV---TNSNTALVAENSRNTTEWFLD 118
Query: 937 TGATNHMTADPTQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVP 764
+GA++H+T + Y G D+V +G+GS++ I H G L+ PH KL L+ + P
Sbjct: 119 SGASSHLTNALENLSVSAPYRGSDTVTIGDGSSVGIDHSGTGLLSTPHRKLLLTQLFHTP 178
Query: 763 DLKKNLLSVSQYTKDNNCCFLFYPWGFVIKDLKSGQILLKGSKHGGLYPIGVXXXXXXXX 584
L+ NLLS+SQ TKDNN +F P GF +KDLK+ ++LL+G GLY +
Sbjct: 179 KLQYNLLSISQLTKDNNISIVFDPNGFYLKDLKTQEVLLQGPCRNGLYQVQTTKPSSTYL 238
Query: 583 XXXXXXXXANKMDYMTWHARLGHPSLSSMNQLSSV-----LNYSNQCNKVCCRSCKLGKS 419
+ + WH R GHP+ +++ L+S + ++N C + C + K+
Sbjct: 239 ACSTV-----RAPTIPWHNRFGHPNNNTLQFLASTNPQLHIEFNNSCMQ-----CNVSKA 288
Query: 418 SKLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWYFPLRRKSEV 239
K+ F N L LHSD+WGPAPS + +GF++Y I VD+ +RF+W FPL+RKS++
Sbjct: 289 HKMSFDTSVNRKKFALELLHSDIWGPAPSVSVQGFQYYAIFVDDCTRFTWLFPLKRKSDI 348
Query: 238 PSIFIQFITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCPGTPEQNGLA 59
IF F + +R +K ++TD GGEY+SH +F T GI+ SCP TPEQNG+A
Sbjct: 349 AQIFFTFKQYIEKYLSRSIKCIRTDGGGEYLSHTFTEFLKTNGIMHQISCPYTPEQNGVA 408
Query: 58 ERKHRHVVETGLSLL 14
ERKHRH++ET SLL
Sbjct: 409 ERKHRHIIETTRSLL 423
>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
Arabidopsis thaliana BAC gb|AF080119 and is a member of
the reverse transcriptase family PF|00078 [Arabidopsis
thaliana]
Length = 1415
Score = 259 bits (663), Expect = 2e-73
Identities = 144/374 (38%), Positives = 210/374 (56%), Gaps = 8/374 (2%)
Frame = -2
Query: 1102 ASPVGDSSGVYCFRCGYPYHKANNCFAP-DSVIADTAQAFTTMHLTDQNDHAWYPDTGAT 926
+SP C CG H A C+ D+ QAF+T+ ++D W+PD+ AT
Sbjct: 270 SSPQVSGPRPVCQICGRTGHTALKCYNRFDNNYQAEIQAFSTLRVSDDTGKEWHPDSAAT 329
Query: 925 NHMTADPTQVEGKTFYHGQDSVLVGNGSTLPISHFGHLTIPHT--KLHLSNVLVVPDLKK 752
H+T+ ++ T Y G D+VLVG+G+ LPI+H G TI + K+ L+ VLVVP+++K
Sbjct: 330 AHVTSSTNGLQSATEYEGDDAVLVGDGTYLPITHTGSTTIKSSNGKIPLNEVLVVPNIQK 389
Query: 751 NLLSVSQYTKDNNCCFLFYPWGFVIKDLKSGQILLKGSKHGGLYPIGVXXXXXXXXXXXX 572
+LLSVS+ D C F I DL++ +++ G + GLY +
Sbjct: 390 SLLSVSKLCDDYPCGVYFDANKVCIIDLQTQKVVTTGPRRNGLYVL---------ENQEF 440
Query: 571 XXXXANKMDYMT---WHARLGHPSLSSMNQL--SSVLNYSNQCNKVCCRSCKLGKSSKLP 407
+N+ T WH RLGH + ++ L S + + C C++GKSS+LP
Sbjct: 441 VALYSNRQCAATEEVWHHRLGHANSKALQHLQNSKAIQINKSRTSPVCEPCQMGKSSRLP 500
Query: 406 FTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWYFPLRRKSEVPSIF 227
F + L +H D+WGP+P + +G ++Y I VD+ SR+SW++PL KSE S+F
Sbjct: 501 FLISDSRVLHPLDRIHCDLWGPSPVVSNQGLKYYAIFVDDYSRYSWFYPLHNKSEFLSVF 560
Query: 226 IQFITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCPGTPEQNGLAERKH 47
I F L+ NQ N ++K Q+D GGE+VS+KL+ + GI SCP TP+QNGLAERKH
Sbjct: 561 ISFQKLVENQLNTKIKVFQSDGGGEFVSNKLKTHLSEHGIHHRISCPYTPQQNGLAERKH 620
Query: 46 RHVVETGLSLLAHS 5
RH+VE GLS+L HS
Sbjct: 621 RHLVELGLSMLFHS 634
>gb|PKU73682.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 1211
Score = 259 bits (661), Expect = 2e-73
Identities = 151/370 (40%), Positives = 199/370 (53%), Gaps = 13/370 (3%)
Frame = -2
Query: 1084 SSGVYCFRCGYPYHKANNC-------FAPDSVIADTAQAFTTMHLTDQNDHA-WYPDTGA 929
SSGV C C H A C + P +QA TD N+ WY D+GA
Sbjct: 118 SSGVICQICKKNGHSAEACWHHLNPNYIPSQPSNKNSQALLAN--TDTNNSTDWYLDSGA 175
Query: 928 TNHMTADPTQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLK 755
+ HMT + Y G D V +G+G ++PI+H G L P KL LS +L P +
Sbjct: 176 STHMTNSTNNLATSNVYTGTDKVTLGDGRSVPIAHSGTGLLPTPSRKLFLSQLLHTPSIS 235
Query: 754 KNLLSVSQYTKDNNCCFLFYPWGFVIKDLKSGQILLKGSKHGGLYPIGVXXXXXXXXXXX 575
NLLSVS KDNN +F GF+ KDL + +ILL+G GLY I
Sbjct: 236 HNLLSVSNLVKDNNISIIFDSSGFIFKDLTTNRILLRGPCRDGLYRIAKPVHQTQHTGLS 295
Query: 574 XXXXXANKMDYMTWHARLGHPSLSSMNQLSSV---LNYSNQCNKVCCRSCKLGKSSKLPF 404
+++ WH RLGHPSLS + +S L+ S+ + C C K KL F
Sbjct: 296 VARTSSSQ-----WHNRLGHPSLSILQHISKNNPDLHISS--TSISCNPCNQCKGHKLQF 348
Query: 403 TRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWYFPLRRKSEVPSIFI 224
N L LHSDVWGP+P P+ +GFR+Y+I VD+ SRF W FP+ KS+V +IFI
Sbjct: 349 PISENLKQAPLELLHSDVWGPSPVPSHQGFRYYVIFVDDYSRFIWLFPIMFKSDVTNIFI 408
Query: 223 QFITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCPGTPEQNGLAERKHR 44
F+T + Q +R++K ++TD GGEYV+ + F GI+ SCP TPEQNGLAERKHR
Sbjct: 409 NFVTFIERQTSRKIKAIRTDGGGEYVNQHFQKFTRDNGILHQTSCPYTPEQNGLAERKHR 468
Query: 43 HVVETGLSLL 14
H++ET +LL
Sbjct: 469 HIMETTRTLL 478