BLASTX nr result
ID: Ophiopogon23_contig00024291
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon23_contig00024291
(504 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PPD88818.1| hypothetical protein GOBAR_DD14224 [Gossypium bar... 64 6e-15
gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposo... 59 4e-14
gb|PHT53674.1| hypothetical protein CQW23_08136 [Capsicum baccatum] 56 5e-14
gb|KYP65226.1| Retrovirus-related Pol polyprotein from transposo... 48 1e-10
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 48 2e-10
dbj|BAQ19356.1| putative gag-pol polyprotein [Torenia fournieri] 56 2e-10
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 47 3e-10
ref|XP_015638684.1| PREDICTED: uncharacterized protein LOC107281... 47 3e-10
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa] 47 4e-10
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 49 4e-10
gb|PNX96445.1| copia LTR rider [Trifolium pratense] 54 6e-10
gb|KYP36635.1| Retrovirus-related Pol polyprotein from transposo... 57 7e-10
gb|KYP58145.1| Retrovirus-related Pol polyprotein from transposo... 59 1e-09
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 45 1e-09
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 45 1e-09
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 45 1e-09
gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposo... 49 1e-09
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar... 46 2e-09
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar... 46 2e-09
gb|KYP62384.1| Retrovirus-related Pol polyprotein from transposo... 56 2e-09
>gb|PPD88818.1| hypothetical protein GOBAR_DD14224 [Gossypium barbadense]
Length = 718
Score = 63.5 bits (153), Expect(2) = 6e-15
Identities = 31/63 (49%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Frame = +2
Query: 5 TIIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLLNKDKI 181
T++ +L +EV IDD DQA+LL C+LPS+YK+FK+ +IY GK L +V HLL++DK+
Sbjct: 394 TLLNDLKNVEVHIDDEDQAMLLLCSLPSSYKSFKETLIY-GKDKLSFEDVKGHLLSRDKL 452
Query: 182 NRQ 190
+ +
Sbjct: 453 DNE 455
Score = 44.7 bits (104), Expect(2) = 6e-15
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Frame = +1
Query: 220 IKEKKDKHRSFTNAEVKSYS---FCKKKGHIRSECFKKELSQSRKHKSDFSLSEEEV--- 381
+ K D+ S A K +CKK GH++++ +K ++K +EE+V
Sbjct: 458 LNSKADRQASVLVASKKREKRCRYCKKLGHVKADYYKL------RNKRAAESNEEDVVGA 511
Query: 382 HVADMAGDEVIYTVTDFLVSDDDGWIVDSGCSQHISPKR 498
++ D GD+ + T WI+DSGCS H+ P R
Sbjct: 512 NLVDEGGDDFLLVSTSDNSKLTSEWILDSGCSFHMYPNR 550
>gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 690
Score = 58.9 bits (141), Expect(2) = 4e-14
Identities = 28/61 (45%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Frame = +2
Query: 5 TIIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLLNKDKI 181
+II +L+ IE+KIDD D+A+LL +LPSTYK FK++++Y +L +V +LL+K+K
Sbjct: 128 SIIMDLENIEIKIDDEDKAVLLIVSLPSTYKHFKEIMLYSNNDTLSFEDVKSNLLSKEKF 187
Query: 182 N 184
+
Sbjct: 188 D 188
Score = 46.6 bits (109), Expect(2) = 4e-14
Identities = 29/88 (32%), Positives = 42/88 (47%)
Frame = +1
Query: 229 KKDKHRSFTNAEVKSYSFCKKKGHIRSECFKKELSQSRKHKSDFSLSEEEVHVADMAGDE 408
KK + +S K+ +CKK GH S+CF + Q R+ K V D GD
Sbjct: 215 KKSRSKSRGRKSNKTCRYCKKFGHDISDCFILKKKQERQEKGKNPAEAANVE-TDSDGDV 273
Query: 409 VIYTVTDFLVSDDDGWIVDSGCSQHISP 492
+I +D + WI+DSGC+ H+ P
Sbjct: 274 MISVSSDKRSKTE--WILDSGCTFHMCP 299
>gb|PHT53674.1| hypothetical protein CQW23_08136 [Capsicum baccatum]
Length = 707
Score = 56.2 bits (134), Expect(2) = 5e-14
Identities = 25/64 (39%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Frame = +2
Query: 5 TIIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLLNKDKI 181
+II +L+ ++V+IDD D+A+LL +LP +Y+ FK++++YG +L ++V +LL+K+K
Sbjct: 126 SIIIDLENLDVEIDDEDKAVLLIVSLPPSYRHFKEIMLYGNNVTLSFDDVKSNLLSKEKF 185
Query: 182 NRQL 193
+ Q+
Sbjct: 186 DTQI 189
Score = 48.9 bits (115), Expect(2) = 5e-14
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +1
Query: 238 KHRSFTNAEVKSYS-FCKKKGHIRSECFKKELSQSRKHKSDFSLSEEEVHVADMAGDEVI 414
K++S + + Y +CKK+ H SEC+K + Q+R+ K E + D
Sbjct: 212 KNQSKSKGKNSKYCRYCKKRNHEISECYKLKNKQNREDKGKQPEKSAEASFVETESDGEC 271
Query: 415 YTVTDFLVSDDDGWIVDSGCSQHISPKR 498
+ + + W++DSGC+ H+SP R
Sbjct: 272 FIASGTEQRSKNEWVLDSGCTFHMSPNR 299
>gb|KYP65226.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 689
Score = 47.8 bits (112), Expect(2) = 1e-10
Identities = 25/62 (40%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Frame = +2
Query: 8 IIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLLNKDKIN 184
+I +L+ I+V IDD DQALLL C+LP Y FK+ +++ G+ S+ ++EV + +K+
Sbjct: 105 LILDLENIDVTIDDEDQALLLLCSLPRAYSHFKETMLF-GRDSVSIDEVQAAINSKELNE 163
Query: 185 RQ 190
R+
Sbjct: 164 RK 165
Score = 45.8 bits (107), Expect(2) = 1e-10
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Frame = +1
Query: 223 KEKKDKHRSFTNAEVKSYSFCKKKGHIRSECFKKELSQSRKHKSDFSLSEEEVHVADMAG 402
K +K K + ++ Y CKK+GH R C ++ + K K + ++ V
Sbjct: 195 KPEKQKDGGESTFTIRCYH-CKKEGHTRKVCPERLANGGNKEKGKYYVNVVIVQ------ 247
Query: 403 DEVIYTVTDFLVSDDDG---WIVDSGCSQHISPKR 498
DE + +VS D+ WI+DSGCS H++P+R
Sbjct: 248 DEGYESAEALVVSKDNSKLEWIMDSGCSWHMTPRR 282
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 47.8 bits (112), Expect(2) = 2e-10
Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Frame = +2
Query: 8 IIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLLNKDKIN 184
I+ +L+ +EVK D+ D L+L C+LPS+Y F+D I+Y + +L + EV + L K+K+
Sbjct: 69 IVADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILY-SRDTLTLKEVYDALHTKEKMK 127
Query: 185 RQL 193
+ +
Sbjct: 128 KMV 130
Score = 45.4 bits (106), Expect(2) = 2e-10
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Frame = +1
Query: 244 RSFTNAEVKSYSFCKKKGHIRSECFKKELSQSRKHKSDFSLSEEE----VHVADMAGDEV 411
RS + KS +CK+ GH SEC+K + R K +EE V D D
Sbjct: 168 RSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAIVTDEKSDAE 227
Query: 412 IYTVTDFLVSDDDGWIVDSGCSQHISPKR 498
+ D WI+D+ C+ H+ P R
Sbjct: 228 LLVAYAGCAQTSDQWILDTACTYHMCPNR 256
>dbj|BAQ19356.1| putative gag-pol polyprotein [Torenia fournieri]
Length = 605
Score = 55.8 bits (133), Expect(2) = 2e-10
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Frame = +2
Query: 8 IIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLLNK 172
+I +L+ IEVKI+D DQALLL CALP +Y TFKD ++YG + +L + EV L +K
Sbjct: 146 LILDLENIEVKIEDEDQALLLVCALPRSYNTFKDTLLYGRE-TLTLKEVQAALKSK 200
Score = 37.4 bits (85), Expect(2) = 2e-10
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Frame = +1
Query: 226 EKKDKHRSFTNAEVKSYS--FCKKKGHIRSECFKKELSQSRK-HKSDFSLSEEEVHVADM 396
E+K H+ N K +C ++GH+ C KKE + +K + + +++ E AD+
Sbjct: 225 EEKKTHKERKNKSKKKVKCFYCDEEGHMCKNCPKKERDKGKKVEQGEAAMACESYESADV 284
Query: 397 AGDEVIYTVTDFLVSDDDG-WIVDSGCSQHIS 489
V + D S+ G W++DS S H++
Sbjct: 285 LA--VTHEDQDVTKSEKSGKWLLDSASSFHVT 314
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 47.0 bits (110), Expect(2) = 3e-10
Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Frame = +2
Query: 8 IIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLLNKDKIN 184
I+ +L+ +EVK D+ D L+L C+LPS+Y F+D I+Y + +L + EV + L K+K+
Sbjct: 36 IVADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILY-SRDTLTLKEVYDALHAKEKMK 94
Query: 185 RQL 193
+ +
Sbjct: 95 KMV 97
Score = 45.4 bits (106), Expect(2) = 3e-10
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Frame = +1
Query: 244 RSFTNAEVKSYSFCKKKGHIRSECFKKELSQSRKHKSDFSLSEEE----VHVADMAGDEV 411
RS + KS +CK+ GH SEC+K + R K +EE V D D
Sbjct: 135 RSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEKSDAE 194
Query: 412 IYTVTDFLVSDDDGWIVDSGCSQHISPKR 498
+ D WI+D+ C+ H+ P R
Sbjct: 195 LLVAYAGCAQTSDQWILDTACTYHMCPNR 223
>ref|XP_015638684.1| PREDICTED: uncharacterized protein LOC107281003 [Oryza sativa
Japonica Group]
Length = 651
Score = 47.0 bits (110), Expect(2) = 3e-10
Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Frame = +2
Query: 8 IIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLLNKDKIN 184
I+ +L+ +EVK D+ D L+L C+LPS+Y F+D I+Y + +L + EV + L K+K+
Sbjct: 10 IVADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILY-SRDTLTLKEVYDALHAKEKMK 68
Query: 185 RQL 193
+ +
Sbjct: 69 KMV 71
Score = 45.4 bits (106), Expect(2) = 3e-10
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Frame = +1
Query: 244 RSFTNAEVKSYSFCKKKGHIRSECFKKELSQSRKHKSDFSLSEEE----VHVADMAGDEV 411
RS + KS +CK+ GH SEC+K + R K +EE V D D
Sbjct: 109 RSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEKSDAE 168
Query: 412 IYTVTDFLVSDDDGWIVDSGCSQHISPKR 498
+ D WI+D+ C+ H+ P R
Sbjct: 169 LLVAYAGCAQTSDQWILDTACTYHMCPNR 197
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa]
Length = 1335
Score = 46.6 bits (109), Expect(2) = 4e-10
Identities = 28/91 (30%), Positives = 44/91 (48%)
Frame = +1
Query: 226 EKKDKHRSFTNAEVKSYSFCKKKGHIRSECFKKELSQSRKHKSDFSLSEEEVHVADMAGD 405
+++ + +S K +CK K H EC KK ++ RK+K D +S V+D
Sbjct: 218 DRRGRSKSKPPGNKKFCVYCKLKNHNIDEC-KKVQAKERKNKKDGKVSVASAAVSDDDSG 276
Query: 406 EVIYTVTDFLVSDDDGWIVDSGCSQHISPKR 498
+ + + D+ WI+DS CS HI KR
Sbjct: 277 DCLVVFAGCVAGHDE-WILDSACSFHICTKR 306
Score = 45.1 bits (105), Expect(2) = 4e-10
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +2
Query: 8 IIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLLNKDKI 181
I+ +L +EVK DD D LLL C+LP++Y F+D I+ + L + EV + L NK+K+
Sbjct: 127 IVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILL-SRDELTLKEVYDALQNKEKM 184
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 48.5 bits (114), Expect(2) = 4e-10
Identities = 25/63 (39%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Frame = +2
Query: 8 IIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLLNKDKIN 184
I+ +L+ +EVK D+ D AL+L C+LPS+Y F+D I+Y + +L + EV + L K+K+
Sbjct: 127 IVADLESMEVKYDEKDLALILLCSLPSSYANFRDTILY-SRDTLTLKEVYDALHAKEKMK 185
Query: 185 RQL 193
+ +
Sbjct: 186 KMV 188
Score = 43.1 bits (100), Expect(2) = 4e-10
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Frame = +1
Query: 244 RSFTNAEVKSYSFCKKKGHIRSECFKKELSQSRKHKSDFSLSEEE----VHVADMAGDEV 411
RS + KS +CK+ GH S+C+K + R K +EE V D D
Sbjct: 226 RSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAE 285
Query: 412 IYTVTDFLVSDDDGWIVDSGCSQHISPKR 498
+ D WI+D+ C+ H+ P R
Sbjct: 286 LLVAYAGCAQTSDQWILDTACTYHMCPNR 314
>gb|PNX96445.1| copia LTR rider [Trifolium pratense]
Length = 1318
Score = 53.9 bits (128), Expect(2) = 6e-10
Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Frame = +2
Query: 8 IIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLLNKDKIN 184
+I +L+ I+VKIDD DQALLL CALP ++ FK+ ++YG + SL EV L +KD
Sbjct: 128 LILDLENIDVKIDDEDQALLLLCALPRSHAHFKETLLYGRE-SLTFEEVQSALYSKDLNE 186
Query: 185 RQ 190
R+
Sbjct: 187 RK 188
Score = 37.4 bits (85), Expect(2) = 6e-10
Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Frame = +1
Query: 217 FIKEKKDKHRSFTN--AEVKSYSFCKKKGHIRSECFKKELSQSRKHKSDFSLSEEEVHVA 390
F K+ K + +S+++ + ++ Y CKK+GH R C E + + ++ +++ +
Sbjct: 212 FDKKGKSQSKSYSDEVSGIRCYH-CKKEGHTRKVC--PERLKDHGGNGNAAIVQDDFESS 268
Query: 391 DMAGDEVIYTVTDFLVSDDDG---WIVDSGCSQHISPKR 498
D+ +VS D WI+DSGC+ H++P +
Sbjct: 269 DV-----------LVVSSSDSRKEWIMDSGCTWHMTPNK 296
>gb|KYP36635.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 364
Score = 57.4 bits (137), Expect(2) = 7e-10
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +1
Query: 220 IKEKKDKHRSFTNAEVKSY-SFCKKKGHIRSECFKKELSQSRKHKSDFSLSEEEVHVADM 396
+K+KKDK + TN K ++CK+ GH + +C KK K K ++++EE
Sbjct: 220 MKKKKDKSKRKTNVNPKDICNYCKEPGHWKKDCPKK------KGKPSAAVAKEE----ST 269
Query: 397 AGDEVIYTVTDFLVSDDDGWIVDSGCSQHISPKR 498
+ +E++ ++ D +D WI+DSGCS H+ P R
Sbjct: 270 SENELVLSIADQPQHSEDQWILDSGCSFHMCPNR 303
Score = 33.5 bits (75), Expect(2) = 7e-10
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +2
Query: 5 TIIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLLNKD 175
+++ EL I+VKI+D D A++L +LP +Y++F + + GK + + EV L +++
Sbjct: 138 SVLMELRDIDVKIEDEDAAMILLASLPPSYESFVNSLSV-GKECITMEEVKSSLHSRE 194
>gb|KYP58145.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 262
Score = 58.9 bits (141), Expect(2) = 1e-09
Identities = 28/61 (45%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Frame = +2
Query: 5 TIIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLLNKDKI 181
+II +L+ IE+KIDD D+A+LL +LPSTYK FK++++Y +L +V +LL+K+K
Sbjct: 104 SIIMDLENIEIKIDDEDKAVLLIVSLPSTYKHFKEIMLYSNNDTLSFEDVKSNLLSKEKF 163
Query: 182 N 184
+
Sbjct: 164 D 164
Score = 31.6 bits (70), Expect(2) = 1e-09
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +1
Query: 229 KKDKHRSFTNAEVKSYSFCKKKGHIRSECFKKELSQSRKHKSDFSLSEEEVHVADMAGD 405
KK + +S K+ +CKK GH S+CF + Q R+ K + V D GD
Sbjct: 191 KKSRSKSRRRKTNKTCRYCKKFGHDISDCFILKKKQERQEKGKNPVEAANVE-TDSDGD 248
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gb|ABA92739.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1373
Score = 45.1 bits (105), Expect(2) = 1e-09
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +2
Query: 8 IIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLLNKDKI 181
I+ +L +EVK DD D LLL C+LP++Y F+D I+ + L + EV + L NK+K+
Sbjct: 125 IVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILL-SRDELTLKEVYDALQNKEKM 182
Score = 45.1 bits (105), Expect(2) = 1e-09
Identities = 27/91 (29%), Positives = 43/91 (47%)
Frame = +1
Query: 226 EKKDKHRSFTNAEVKSYSFCKKKGHIRSECFKKELSQSRKHKSDFSLSEEEVHVADMAGD 405
+++ + +S K +CK K H EC KK ++ RK+K D +S +D
Sbjct: 216 DRRGRSKSKPPGNKKFCVYCKLKNHNIDEC-KKVQAKERKNKKDGKVSVASAAASDDDSG 274
Query: 406 EVIYTVTDFLVSDDDGWIVDSGCSQHISPKR 498
+ + + D+ WI+DS CS HI KR
Sbjct: 275 DCLVVFAGCVAGHDE-WILDSACSFHICTKR 304
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 45.1 bits (105), Expect(2) = 1e-09
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +2
Query: 8 IIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLLNKDKI 181
I+ +L +EVK DD D LLL C+LP++Y F+D I+ + L + EV + L NK+K+
Sbjct: 125 IVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILL-SRDELTLKEVYDALQNKEKM 182
Score = 45.1 bits (105), Expect(2) = 1e-09
Identities = 27/91 (29%), Positives = 43/91 (47%)
Frame = +1
Query: 226 EKKDKHRSFTNAEVKSYSFCKKKGHIRSECFKKELSQSRKHKSDFSLSEEEVHVADMAGD 405
+++ + +S K +CK K H EC KK ++ RK+K D +S +D
Sbjct: 216 DRRGRSKSKPPGNKKFCVYCKLKNHNIDEC-KKVQAKERKNKKDGKVSVASAAASDDDSG 274
Query: 406 EVIYTVTDFLVSDDDGWIVDSGCSQHISPKR 498
+ + + D+ WI+DS CS HI KR
Sbjct: 275 DCLVVFAGCVAGHDE-WILDSACSFHICTKR 304
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 45.1 bits (105), Expect(2) = 1e-09
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +2
Query: 8 IIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLLNKDKI 181
I+ +L +EVK DD D LLL C+LP++Y F+D I+ + L + EV + L NK+K+
Sbjct: 125 IVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILL-SRDELTLKEVYDALQNKEKM 182
Score = 45.1 bits (105), Expect(2) = 1e-09
Identities = 27/91 (29%), Positives = 43/91 (47%)
Frame = +1
Query: 226 EKKDKHRSFTNAEVKSYSFCKKKGHIRSECFKKELSQSRKHKSDFSLSEEEVHVADMAGD 405
+++ + +S K +CK K H EC KK ++ RK+K D +S +D
Sbjct: 216 DRRGRSKSKPPGNKKFCVYCKLKNHNIDEC-KKVQAKERKNKKDGKVSVASAAASDDDSG 274
Query: 406 EVIYTVTDFLVSDDDGWIVDSGCSQHISPKR 498
+ + + D+ WI+DS CS HI KR
Sbjct: 275 DCLVVFAGCVAGHDE-WILDSACSFHICTKR 304
>gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Apostasia shenzhenica]
Length = 365
Score = 48.9 bits (115), Expect(2) = 1e-09
Identities = 28/87 (32%), Positives = 40/87 (45%)
Frame = +1
Query: 238 KHRSFTNAEVKSYSFCKKKGHIRSECFKKELSQSRKHKSDFSLSEEEVHVADMAGDEVIY 417
++RS + +CKK+GH + +C KK Q +K S EE VA +
Sbjct: 103 RYRSISKENDNRCYYCKKEGHWKRDCPKKSKQQQQKK------SGEEASVASRLEKDSET 156
Query: 418 TVTDFLVSDDDGWIVDSGCSQHISPKR 498
T + D WI+DS CS H+ P R
Sbjct: 157 LCTFSCMDSSDSWILDSDCSYHMCPFR 183
Score = 41.2 bits (95), Expect(2) = 1e-09
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +2
Query: 8 IIYELDKIEVKIDDD-QALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLLNKDKIN 184
+I +L I VK++++ +ALLL +LP +Y I+Y GK +LKV EV LL+ + N
Sbjct: 17 MISQLRSINVKLEEENEALLLLSSLPKSYDHLVTTILY-GKDTLKVEEVNATLLSNEVRN 75
Query: 185 RQLT 196
+Q T
Sbjct: 76 KQST 79
>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
Length = 2351
Score = 45.8 bits (107), Expect(2) = 2e-09
Identities = 24/65 (36%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Frame = +2
Query: 5 TIIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLLNKDKI 181
+II +L+ I+ KIDD DQA+++ C+LP +Y+ F D ++Y G+ L + EV ++ L+ ++
Sbjct: 630 SIIMDLNNIDNKIDDEDQAIIVLCSLPPSYENFVDTMMY-GRDDLTLEEV-KNALSSSEL 687
Query: 182 NRQLT 196
+++T
Sbjct: 688 RKKIT 692
Score = 43.9 bits (102), Expect(2) = 2e-09
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Frame = +1
Query: 232 KDKHRSFTNAEVKSYSFCKKKGHIRSECFK-KELSQSRKHKSDFSLSEEEVHVADMAGD- 405
K RS + ++ Y +CKK GH++ +C K KE S+S++ ++D V AD + D
Sbjct: 719 KSHPRSQSKKRIQCY-YCKKYGHMKVDCPKRKEKSESQEQQND----RANVADADSSSDA 773
Query: 406 EVIYTVTDFLVSDDDGWIVDSGCSQHISPKR 498
E++ V+D WI+D+G + HIS +
Sbjct: 774 EIVLAVSDSYAG--GRWILDTGATFHISTSK 802
>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
Length = 1841
Score = 45.8 bits (107), Expect(2) = 2e-09
Identities = 24/65 (36%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Frame = +2
Query: 5 TIIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLLNKDKI 181
+II +L+ I+ KIDD DQA+++ C+LP +Y+ F D ++Y G+ L + EV ++ L+ ++
Sbjct: 651 SIIMDLNNIDNKIDDEDQAIIVLCSLPPSYENFVDTMMY-GRDDLTLEEV-KNALSSSEL 708
Query: 182 NRQLT 196
+++T
Sbjct: 709 RKKIT 713
Score = 43.9 bits (102), Expect(2) = 2e-09
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Frame = +1
Query: 232 KDKHRSFTNAEVKSYSFCKKKGHIRSECFK-KELSQSRKHKSDFSLSEEEVHVADMAGD- 405
K RS + ++ Y +CKK GH++ +C K KE S+S++ ++D V AD + D
Sbjct: 740 KSHPRSQSKKRIQCY-YCKKYGHMKVDCPKRKEKSESQEQQND----RANVADADSSSDA 794
Query: 406 EVIYTVTDFLVSDDDGWIVDSGCSQHISPKR 498
E++ V+D WI+D+G + HIS +
Sbjct: 795 EIVLAVSDSYAG--GRWILDTGATFHISTSK 823
>gb|KYP62384.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 254
Score = 56.2 bits (134), Expect(2) = 2e-09
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +1
Query: 220 IKEKKDKHRSFTNAEVKSY-SFCKKKGHIRSECFKKELSQSRKHKSDFSLSEEEVHVADM 396
+K+KK K + TN K ++CK+ GH + +C KK K K ++++EE
Sbjct: 117 MKKKKHKSKRKTNVNPKDICNYCKEPGHWKKDCPKK------KGKPSIAVAKEE----ST 166
Query: 397 AGDEVIYTVTDFLVSDDDGWIVDSGCSQHISPKR 498
+ +E++ ++ D +D WI+DSGCS H+ P R
Sbjct: 167 SENELVLSIADHPQHSEDQWILDSGCSFHMCPNR 200
Score = 33.5 bits (75), Expect(2) = 2e-09
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +2
Query: 5 TIIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLLNKD 175
+++ EL I+VKI+D D A++L +LP +Y++F + + GK + + EV L +++
Sbjct: 35 SVLMELRDIDVKIEDEDAAMILLASLPPSYESFVNSLSV-GKECITMEEVKSSLHSRE 91