BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00022309
         (722 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|OMO52057.1| hypothetical protein CCACVL1_29395 [Corchorus cap...   115   1e-25
gb|PKU75882.1| Retrovirus-related Pol polyprotein from transposo...   112   1e-24
gb|PRQ16309.1| putative RNA-directed DNA polymerase [Rosa chinen...   110   2e-24
gb|PRQ42184.1| putative RNA-directed DNA polymerase [Rosa chinen...   110   6e-24
gb|OMO62875.1| hypothetical protein CCACVL1_22594 [Corchorus cap...   110   7e-24
gb|PKU64446.1| Retrovirus-related Pol polyprotein from transposo...   110   8e-24
gb|PKU76601.1| Retrovirus-related Pol polyprotein from transposo...   109   1e-23
gb|OMO61326.1| Integrase, catalytic core [Corchorus capsularis]       108   4e-23
gb|PKU76715.1| Retrovirus-related Pol polyprotein from transposo...   107   6e-23
gb|PRQ55598.1| putative RNA-directed DNA polymerase [Rosa chinen...   107   7e-23
gb|OMO73140.1| Integrase, catalytic core [Corchorus capsularis]       106   1e-22
gb|PKU62356.1| Retrovirus-related Pol polyprotein from transposo...   105   2e-22
gb|PKU77708.1| Retrovirus-related Pol polyprotein from transposo...   105   2e-22
emb|CAN65591.1| hypothetical protein VITISV_042091 [Vitis vinifera]   105   3e-22
gb|PKA49422.1| Retrovirus-related Pol polyprotein from transposo...   104   4e-22
gb|OMO55025.1| Integrase, catalytic core [Corchorus capsularis]       105   4e-22
gb|PKU73211.1| Retrovirus-related Pol polyprotein from transposo...   105   4e-22
ref|XP_020689769.1| uncharacterized protein LOC110104843 [Dendro...   105   5e-22
emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera]   105   5e-22
ref|XP_009368272.2| PREDICTED: uncharacterized protein LOC103957...   104   7e-22

>gb|OMO52057.1| hypothetical protein CCACVL1_29395 [Corchorus capsularis]
          Length = 1810

 Score =  115 bits (288), Expect = 1e-25
 Identities = 59/109 (54%), Positives = 73/109 (66%), Gaps = 3/109 (2%)
 Frame = -1

Query: 722  NRLPSPRLAHKSPFEILFPKISDYQFLRIFGALCFPWLRPY-SHKLEPRS-RCVFQDYCA 549
            NRL +P+L HKSP+EILF + + Y  LR FG LC+PWLRPY +HKL PRS RCVF  Y  
Sbjct: 1468 NRLSTPKLKHKSPYEILFHEQTKYDSLRTFGCLCYPWLRPYAAHKLAPRSTRCVFLGYSK 1527

Query: 548  RSKGYRCLDPSTGTMFISRHVRFFEDIFPFSFDLQ-AAKSCHSNTKHSP 405
              KGYRCLD S+G ++I+ HV F E +FPF  + +  A    S T H P
Sbjct: 1528 LHKGYRCLDFSSGKIYITHHVIFDEHVFPFKVNSEPVAPPATSTTNHLP 1576


>gb|PKU75882.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1390

 Score =  112 bits (281), Expect = 1e-24
 Identities = 56/108 (51%), Positives = 72/108 (66%), Gaps = 2/108 (1%)
 Frame = -1

Query: 722 NRLPSPRLAHKSPFEILFPKISDYQFLRIFGALCFPWLRPY-SHKLEPRSR-CVFQDYCA 549
           NRLPSP  +HKSP+EIL+ +  +Y+FL++FG LC+PWL+PY S KL P S  CVF  Y  
Sbjct: 672 NRLPSPNTSHKSPYEILYRRSPNYKFLKVFGCLCYPWLKPYTSSKLSPLSHPCVFIGYAQ 731

Query: 548 RSKGYRCLDPSTGTMFISRHVRFFEDIFPFSFDLQAAKSCHSNTKHSP 405
             KGYRCLDP T  ++IS HV F E + PFS       S HS + ++P
Sbjct: 732 SQKGYRCLDPLTNKVYISPHVVFNEAVLPFS-----NLSVHSTSSNNP 774


>gb|PRQ16309.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 461

 Score =  110 bits (275), Expect = 2e-24
 Identities = 56/96 (58%), Positives = 65/96 (67%), Gaps = 2/96 (2%)
 Frame = -1

Query: 722 NRLPSPRLAHKSPFEILFPKISDYQFLRIFGALCFPWLRPY-SHKLEPRSR-CVFQDYCA 549
           NRLPS  L   SPFE LF    DY FLR +G LCFPWL+PY +HKL+ RSR CVF  Y  
Sbjct: 290 NRLPSSSLHFISPFEQLFNTAPDYNFLRAYGCLCFPWLKPYAAHKLDFRSRKCVFLGYSL 349

Query: 548 RSKGYRCLDPSTGTMFISRHVRFFEDIFPFSFDLQA 441
             KGYRCLDP+ G +++SRHV F E+ FPF   L A
Sbjct: 350 YQKGYRCLDPTNGRVYVSRHVIFDENTFPFKEKLSA 385


>gb|PRQ42184.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1024

 Score =  110 bits (275), Expect = 6e-24
 Identities = 56/96 (58%), Positives = 65/96 (67%), Gaps = 2/96 (2%)
 Frame = -1

Query: 722 NRLPSPRLAHKSPFEILFPKISDYQFLRIFGALCFPWLRPY-SHKLEPRSR-CVFQDYCA 549
           NRLPS  L   SPFE LF    DY FLR +G LCFPWL+PY +HKL+ RSR CVF  Y  
Sbjct: 290 NRLPSSSLHFISPFEQLFNTAPDYNFLRAYGCLCFPWLKPYAAHKLDFRSRKCVFLGYSL 349

Query: 548 RSKGYRCLDPSTGTMFISRHVRFFEDIFPFSFDLQA 441
             KGYRCLDP+ G +++SRHV F E+ FPF   L A
Sbjct: 350 YQKGYRCLDPTNGRVYVSRHVIFDENTFPFKEKLSA 385


>gb|OMO62875.1| hypothetical protein CCACVL1_22594 [Corchorus capsularis]
          Length = 1716

 Score =  110 bits (275), Expect = 7e-24
 Identities = 54/90 (60%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
 Frame = -1

Query: 722 NRLPSPRLAHKSPFEILFPKISDYQFLRIFGALCFPWLRPYS-HKLEPRS-RCVFQDYCA 549
           NRLP+PRL HKSPFE +F +   Y  LR FG LC+PWLRPY+ +KL P+S +CVF  Y  
Sbjct: 720 NRLPTPRLNHKSPFETIFHEKPKYNTLRTFGCLCYPWLRPYAQNKLSPQSTKCVFLGYSK 779

Query: 548 RSKGYRCLDPSTGTMFISRHVRFFEDIFPF 459
             KGYRCLD  TG + ISRHV F E +FPF
Sbjct: 780 LHKGYRCLDFETGKIHISRHVLFDEQVFPF 809


>gb|PKU64446.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 792

 Score =  110 bits (274), Expect = 8e-24
 Identities = 53/108 (49%), Positives = 70/108 (64%), Gaps = 2/108 (1%)
 Frame = -1

Query: 722 NRLPSPRLAHKSPFEILFPKISDYQFLRIFGALCFPWLRPYS-HKLEPRSR-CVFQDYCA 549
           NRLPSP   +KSP++IL+    +   L+IFG LC+PWL+PY+ HK  P S+ CVF  Y +
Sbjct: 88  NRLPSPNTGNKSPYKILYNANPNLSHLKIFGCLCYPWLKPYAAHKFSPLSQPCVFLGYAS 147

Query: 548 RSKGYRCLDPSTGTMFISRHVRFFEDIFPFSFDLQAAKSCHSNTKHSP 405
             KGY+CLDP T  +++SRHV F EDIFPFS    +  +  S   H P
Sbjct: 148 NQKGYKCLDPKTNKIYVSRHVVFNEDIFPFSQFPDSVSTPMSPAPHIP 195


>gb|PKU76601.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1385

 Score =  109 bits (273), Expect = 1e-23
 Identities = 52/90 (57%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
 Frame = -1

Query: 722 NRLPSPRLAHKSPFEILFPKISDYQFLRIFGALCFPWLRPYS-HKLEPRSR-CVFQDYCA 549
           NRLPSP   +KSP+EIL+ +  DY  L++FG+LC+PWL+PYS HK  P S  CVF  Y  
Sbjct: 666 NRLPSPNTHNKSPYEILYQEPPDYTHLKVFGSLCYPWLKPYSNHKFSPLSHPCVFIGYAP 725

Query: 548 RSKGYRCLDPSTGTMFISRHVRFFEDIFPF 459
             KGYRCLDP    +F SRHV F E IFPF
Sbjct: 726 LQKGYRCLDPKNNKVFTSRHVVFNEQIFPF 755


>gb|OMO61326.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 818

 Score =  108 bits (269), Expect = 4e-23
 Identities = 53/91 (58%), Positives = 64/91 (70%), Gaps = 2/91 (2%)
 Frame = -1

Query: 722 NRLPSPRLAHKSPFEILFPKISDYQFLRIFGALCFPWLRPY-SHKLEP-RSRCVFQDYCA 549
           NRL +P+L HKSP+EI+F    +Y  LR FG LC+PWL PY +HKL P  S+CVF  Y  
Sbjct: 215 NRLLTPKLKHKSPYEIIFQDKPNYDSLRTFGCLCYPWLHPYAAHKLAPMSSKCVFLGYSK 274

Query: 548 RSKGYRCLDPSTGTMFISRHVRFFEDIFPFS 456
             KGYRCLD S G +FISRHV F E +FPF+
Sbjct: 275 LHKGYRCLDFSNGKIFISRHVIFDERVFPFA 305


>gb|PKU76715.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1385

 Score =  107 bits (268), Expect = 6e-23
 Identities = 52/90 (57%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
 Frame = -1

Query: 722 NRLPSPRLAHKSPFEILFPKISDYQFLRIFGALCFPWLRPYS-HKLEPRSR-CVFQDYCA 549
           NRLPSP   +KSP EIL+ +  DY  L++FG+LC+PWL+PYS HK  P S+ CVF  Y  
Sbjct: 666 NRLPSPNTHNKSPHEILYQEPPDYTNLKVFGSLCYPWLKPYSHHKFSPLSQPCVFIGYAP 725

Query: 548 RSKGYRCLDPSTGTMFISRHVRFFEDIFPF 459
             KGYRCLDP    +F SRHV F E IFPF
Sbjct: 726 LQKGYRCLDPKNNKVFTSRHVVFNEQIFPF 755


>gb|PRQ55598.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 733

 Score =  107 bits (267), Expect = 7e-23
 Identities = 84/250 (33%), Positives = 107/250 (42%), Gaps = 13/250 (5%)
 Frame = -1

Query: 722  NRLPSPRLAHKSPFEILFPKISDYQFLRIFGALCFPWLRPY-SHKLEPRSR-CVFQDYCA 549
            NRLP+  +  KSPFEIL+ K  DYQFL+ FG LCFPWLRPY +HK  PRS  C+F  Y  
Sbjct: 447  NRLPT--MTSKSPFEILYNKAPDYQFLKPFGCLCFPWLRPYTTHKFAPRSSPCIFIGYSH 504

Query: 548  RSKGYRCLDPSTGTMFISRHVRFFEDIFPF-SFDLQAAKSCHSNTKHSPYXXXXXXXXXX 372
              KGY CLDP +G ++ SRHV+F E  FPF +     + S HS+                
Sbjct: 505  DHKGYDCLDPISGRIYTSRHVQFDETSFPFKTHTAHTSSSTHSD---------------- 548

Query: 371  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQQPRSQRSITTTIPTSDSVPAMLILRNHSV 192
                                            P S    TT+  +S S P++        
Sbjct: 549  --------------------------LPIFLHPYSPPIPTTSPLSSQSFPSI-------P 575

Query: 191  TPIDLSPLGSVAPSGPLLI-----NPAPVHPPTINHPPCNENPVDPTPSQPAPTADSSLV 27
            TP   SP      + P LI     NP P  P ++  PP    P+ P    P P     ++
Sbjct: 576  TPHTSSPTHHSTSTSPTLIPSPRSNPLPAIPTSVPSPPPIPAPLPPN-QPPLPNTSRHIL 634

Query: 26   -----APSHH 12
                 APS H
Sbjct: 635  RRSTPAPSPH 644


>gb|OMO73140.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 1398

 Score =  106 bits (265), Expect = 1e-22
 Identities = 53/108 (49%), Positives = 70/108 (64%), Gaps = 2/108 (1%)
 Frame = -1

Query: 722 NRLPSPRLAHKSPFEILFPKISDYQFLRIFGALCFPWLRPY-SHKLEPRSR-CVFQDYCA 549
           NR+P+P LAHKSPFE+LF K  +Y  L+IFG LCFPWL+PY + KLEP+SR CVF  Y  
Sbjct: 637 NRMPTPTLAHKSPFEVLFQKQPNYSKLKIFGCLCFPWLKPYATSKLEPKSRSCVFIGYST 696

Query: 548 RSKGYRCLDPSTGTMFISRHVRFFEDIFPFSFDLQAAKSCHSNTKHSP 405
               Y+C D  T  ++ SRHV F E  FPF  +  ++ +  S+   +P
Sbjct: 697 HQSAYKCYDFVTHKIYTSRHVVFSEKDFPFHSNTTSSSTTPSSMVSTP 744


>gb|PKU62356.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 804

 Score =  105 bits (263), Expect = 2e-22
 Identities = 53/90 (58%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
 Frame = -1

Query: 722 NRLPSPRLAHKSPFEILFPKISDYQFLRIFGALCFPWLRPYS-HKLEPRS-RCVFQDYCA 549
           NRLPS  L ++SP++IL+ K S Y  L+IFG LC+PWLRPYS  KL   S  CVF  Y +
Sbjct: 88  NRLPSRALQNRSPYQILYQKPSAYNHLKIFGCLCYPWLRPYSTSKLSTFSIPCVFIGYAS 147

Query: 548 RSKGYRCLDPSTGTMFISRHVRFFEDIFPF 459
             KGYRCLDP TG ++ISRHV F E IFP+
Sbjct: 148 AQKGYRCLDPKTGKVYISRHVIFNEAIFPY 177


>gb|PKU77708.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 885

 Score =  105 bits (263), Expect = 2e-22
 Identities = 51/91 (56%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
 Frame = -1

Query: 722 NRLPSPRLAHKSPFEILFPKISDYQFLRIFGALCFPWLRPY-SHKLEPRSR-CVFQDYCA 549
           NRLPSP    KSP+EILF K  DY  LR++G LC+PWL+PY ++KL P S+ CVF  Y  
Sbjct: 167 NRLPSPNTQFKSPYEILFSKPPDYSQLRVYGCLCYPWLKPYTNNKLSPISQPCVFLGYAT 226

Query: 548 RSKGYRCLDPSTGTMFISRHVRFFEDIFPFS 456
             KGYRCLD  T  ++ S HV F E IFPF+
Sbjct: 227 TQKGYRCLDTKTNQIYTSAHVIFNESIFPFA 257


>emb|CAN65591.1| hypothetical protein VITISV_042091 [Vitis vinifera]
          Length = 1427

 Score =  105 bits (263), Expect = 3e-22
 Identities = 51/91 (56%), Positives = 64/91 (70%), Gaps = 2/91 (2%)
 Frame = -1

Query: 722 NRLPSPRLAHKSPFEILFPKISDYQFLRIFGALCFPWLRPYS-HKLEPRSR-CVFQDYCA 549
           NRLP+P L H+SPFE LF  + +Y  LR FG LCFPW+RPYS HKL+ RS+ CVF  Y  
Sbjct: 648 NRLPTPILKHQSPFESLFQHMPNYDKLRAFGCLCFPWMRPYSDHKLDKRSKPCVFLGYSN 707

Query: 548 RSKGYRCLDPSTGTMFISRHVRFFEDIFPFS 456
               Y+CLD S+  ++ISRHV+F E  FPF+
Sbjct: 708 THNAYKCLDLSSNRVYISRHVQFIEHKFPFA 738


>gb|PKA49422.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 494

 Score =  104 bits (260), Expect = 4e-22
 Identities = 51/91 (56%), Positives = 64/91 (70%), Gaps = 2/91 (2%)
 Frame = -1

Query: 722 NRLPSPRLAHKSPFEILFPKISDYQFLRIFGALCFPWLRPYS-HKLEPRSR-CVFQDYCA 549
           NRLP+P L H +P + L+ +I DY FLRIFG  C+PWLRPY+ +KL+PRS+ C F  Y  
Sbjct: 246 NRLPTPILHHITPLQKLYGRIPDYNFLRIFGCACYPWLRPYTRNKLQPRSQLCAFLGYST 305

Query: 548 RSKGYRCLDPSTGTMFISRHVRFFEDIFPFS 456
              GYRCL  STG ++ISRHV F E  FPF+
Sbjct: 306 MHHGYRCLHISTGRVYISRHVVFHEAHFPFT 336


>gb|OMO55025.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 1488

 Score =  105 bits (262), Expect = 4e-22
 Identities = 51/103 (49%), Positives = 69/103 (66%), Gaps = 2/103 (1%)
 Frame = -1

Query: 722  NRLPSPRLAHKSPFEILFPKISDYQFLRIFGALCFPWLRPYS-HKLEPRSR-CVFQDYCA 549
            NRLP+P L +KSPF +LF +  + + L++FG+LC+PWL+PY+ HK+EP+SR CVF  Y  
Sbjct: 796  NRLPTPVLKNKSPFHLLFSQEPNLEKLKVFGSLCYPWLKPYTQHKMEPKSRPCVFLGYSK 855

Query: 548  RSKGYRCLDPSTGTMFISRHVRFFEDIFPFSFDLQAAKSCHSN 420
                Y CLDP +  +F+SRHV F E  FPF      AK  +SN
Sbjct: 856  NQSAYLCLDPVSQKIFVSRHVLFDETKFPFKHVTAGAKISNSN 898


>gb|PKU73211.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 726

 Score =  105 bits (261), Expect = 4e-22
 Identities = 51/90 (56%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
 Frame = -1

Query: 722 NRLPSPRLAHKSPFEILFPKISDYQFLRIFGALCFPWLRPYS-HKLEPRS-RCVFQDYCA 549
           NRLPS  L ++SP++IL+ K   Y  L+IFG LC+PWLRPYS  KL P S  CVF  Y +
Sbjct: 27  NRLPSRALQNRSPYQILYQKPPAYNHLKIFGCLCYPWLRPYSTSKLSPLSIPCVFIGYAS 86

Query: 548 RSKGYRCLDPSTGTMFISRHVRFFEDIFPF 459
             KGYRCL+P TG +++SRHV F E IFP+
Sbjct: 87  AQKGYRCLNPKTGKVYVSRHVIFNEAIFPY 116


>ref|XP_020689769.1| uncharacterized protein LOC110104843 [Dendrobium catenatum]
          Length = 1181

 Score =  105 bits (261), Expect = 5e-22
 Identities = 49/96 (51%), Positives = 65/96 (67%), Gaps = 2/96 (2%)
 Frame = -1

Query: 722 NRLPSPRLAHKSPFEILFPKISDYQFLRIFGALCFPWLRPY-SHKLEPRS-RCVFQDYCA 549
           NRLPS  L +KSP+ IL+ K+ +Y  L++FG LC+PW RPY + KL P S  C+F  Y +
Sbjct: 639 NRLPSRTLKNKSPYNILYQKLPEYTHLKVFGCLCYPWTRPYNTTKLSPLSVPCIFIGYAS 698

Query: 548 RSKGYRCLDPSTGTMFISRHVRFFEDIFPFSFDLQA 441
              GYRCLDP+TG ++ SRHV F E IFP+    Q+
Sbjct: 699 AQNGYRCLDPNTGFVYTSRHVIFHEGIFPYQTSTQS 734


>emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera]
          Length = 1361

 Score =  105 bits (261), Expect = 5e-22
 Identities = 51/93 (54%), Positives = 65/93 (69%), Gaps = 2/93 (2%)
 Frame = -1

Query: 722 NRLPSPRLAHKSPFEILFPKISDYQFLRIFGALCFPWLRPYS-HKLEPRSR-CVFQDYCA 549
           NRLP P LA K+P+E+LF K  DY  LR FG LCFP+LR YS +KL P+S  CVF  Y  
Sbjct: 617 NRLPPPSLAGKTPYELLFGKQPDYSMLRTFGCLCFPYLRDYSPNKLSPKSTPCVFLGYST 676

Query: 548 RSKGYRCLDPSTGTMFISRHVRFFEDIFPFSFD 450
             KG+RCLD  T  +++SRHV+F+E  FP++ D
Sbjct: 677 LHKGFRCLDRKTHRVYVSRHVQFYEHTFPYNGD 709


>ref|XP_009368272.2| PREDICTED: uncharacterized protein LOC103957781 [Pyrus x
           bretschneideri]
          Length = 1880

 Score =  104 bits (260), Expect = 7e-22
 Identities = 54/108 (50%), Positives = 70/108 (64%), Gaps = 2/108 (1%)
 Frame = -1

Query: 722 NRLPSPRLAHKSPFEILFPKISDYQFLRIFGALCFPWLRPYS-HKLEPRSR-CVFQDYCA 549
           NRLP+  L++KSP+E LF +   Y F ++FG  CFPWLRPY+ HKLE +S+ CVF  Y  
Sbjct: 84  NRLPTRVLSNKSPYEKLFTRTPKYDFFKVFGCRCFPWLRPYTQHKLEAKSKSCVFLGYSL 143

Query: 548 RSKGYRCLDPSTGTMFISRHVRFFEDIFPFSFDLQAAKSCHSNTKHSP 405
             +GY+CLD ST  +++SRHV F ED FPF  D+   K     T  SP
Sbjct: 144 DHQGYKCLDVSTRRVYLSRHVLFDEDSFPFK-DITLQKESVHATGSSP 190