BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00018050
         (677 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_017233167.1| PREDICTED: uncharacterized protein LOC108207...   228   2e-65
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]   219   4e-62
emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]   219   6e-62
gb|EXB35423.1| Retrovirus-related Pol polyprotein from transposo...   187   1e-53
gb|ADJ18449.1| gag/pol protein, partial [Bryonia dioica]              187   1e-50
gb|AMY96445.1| gag/pol protein [Momordica dioica]                     171   3e-45
gb|KYP42262.1| Retrovirus-related Pol polyprotein from transposo...   165   7e-44
gb|KYP60044.1| Retrovirus-related Pol polyprotein from transposo...   154   1e-39
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...   154   3e-39
gb|PNX85475.1| copia protein (gag-int-pol protein), partial [Tri...   149   1e-38
dbj|BAA22288.1| polyprotein [Oryza australiensis]                     152   2e-38
gb|PKI51479.1| hypothetical protein CRG98_028190 [Punica granatum]    147   6e-38
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]     149   1e-37
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc...   149   1e-37
gb|EEC73244.1| hypothetical protein OsI_07346 [Oryza sativa Indi...   144   7e-37
emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]         147   8e-37
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-...   145   2e-36
gb|EXC13109.1| Retrovirus-related Pol polyprotein from transposo...   137   2e-35
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]     142   2e-35
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc...   142   2e-35

>ref|XP_017233167.1| PREDICTED: uncharacterized protein LOC108207215, partial [Daucus
            carota subsp. sativus]
          Length = 3860

 Score =  228 bits (582), Expect = 2e-65
 Identities = 119/218 (54%), Positives = 149/218 (68%), Gaps = 4/218 (1%)
 Frame = +1

Query: 34   KGFQVSRELDDGEISFSLGTEARVSAAAVGVIRLSFPGNKILILNNALYVPNIRRNLISV 213
            +GFQ SR L DGEI   +G   +V+  AVGVI LSF  ++IL+LNN LYVP+ RRNLISV
Sbjct: 459  QGFQQSRMLRDGEIYVFMGDATKVAVVAVGVIHLSFGSDRILVLNNCLYVPSFRRNLISV 518

Query: 214  PSLALQGYTCMFGQDLVIKINGNFVCSGKLSNGLYFVNPT--VMEVNNSEIVKSVLPKKR 387
              LA+ GY     +++ I +N   +CSG L + LY +NP+   +++ +  +  +     +
Sbjct: 519  SKLAMDGYNVCLDRNVSIMMNKRIICSGTLQDNLYIINPSQPALQLQHRVLNNTSSTSNK 578

Query: 388  KFSPSS--PTKLWHLRLGHINLDRINRLVKGGVLPSLEVEPISVCESCLEGKMTKRSFPA 561
            +  PSS   T LWHLRLGHINL RI RLV  G L SL VEP  VCESCLEGKMT R F A
Sbjct: 579  RKEPSSLNQTYLWHLRLGHINLRRIQRLVVDGPLGSLAVEPFPVCESCLEGKMTNRPFKA 638

Query: 562  KGNRAGGLLELIHSDVCGPMNIKAREGYLYYVTFIDDY 675
            KGNRA  +L L+HSD+CGPMNI+AR GY Y+VTFIDDY
Sbjct: 639  KGNRAKEVLGLVHSDLCGPMNIQARGGYEYFVTFIDDY 676



 Score =  228 bits (582), Expect = 2e-65
 Identities = 119/218 (54%), Positives = 149/218 (68%), Gaps = 4/218 (1%)
 Frame = +1

Query: 34   KGFQVSRELDDGEISFSLGTEARVSAAAVGVIRLSFPGNKILILNNALYVPNIRRNLISV 213
            +GFQ SR L DGEI   +G   +V+  AVGVI LSF  ++IL+LNN LYVP+ RRNLISV
Sbjct: 1674 QGFQQSRMLRDGEIYVFMGDATKVAVVAVGVIHLSFGSDRILVLNNCLYVPSFRRNLISV 1733

Query: 214  PSLALQGYTCMFGQDLVIKINGNFVCSGKLSNGLYFVNPT--VMEVNNSEIVKSVLPKKR 387
              LA+ GY     +++ I +N   +CSG L + LY +NP+   +++ +  +  +     +
Sbjct: 1734 SKLAMDGYNVCLDRNVSIMMNKRIICSGTLQDNLYIINPSQPALQLQHRVLNNTSSTSNK 1793

Query: 388  KFSPSS--PTKLWHLRLGHINLDRINRLVKGGVLPSLEVEPISVCESCLEGKMTKRSFPA 561
            +  PSS   T LWHLRLGHINL RI RLV  G L SL VEP  VCESCLEGKMT R F A
Sbjct: 1794 RKEPSSLNQTYLWHLRLGHINLRRIQRLVVDGPLGSLAVEPFPVCESCLEGKMTNRPFKA 1853

Query: 562  KGNRAGGLLELIHSDVCGPMNIKAREGYLYYVTFIDDY 675
            KGNRA  +L L+HSD+CGPMNI+AR GY Y+VTFIDDY
Sbjct: 1854 KGNRAKEVLGLVHSDLCGPMNIQARGGYEYFVTFIDDY 1891



 Score =  228 bits (582), Expect = 2e-65
 Identities = 119/218 (54%), Positives = 149/218 (68%), Gaps = 4/218 (1%)
 Frame = +1

Query: 34   KGFQVSRELDDGEISFSLGTEARVSAAAVGVIRLSFPGNKILILNNALYVPNIRRNLISV 213
            +GFQ SR L DGEI   +G   +V+  AVGVI LSF  ++IL+LNN LYVP+ RRNLISV
Sbjct: 2889 QGFQQSRMLRDGEIYVFMGDATKVAVVAVGVIHLSFGSDRILVLNNCLYVPSFRRNLISV 2948

Query: 214  PSLALQGYTCMFGQDLVIKINGNFVCSGKLSNGLYFVNPT--VMEVNNSEIVKSVLPKKR 387
              LA+ GY     +++ I +N   +CSG L + LY +NP+   +++ +  +  +     +
Sbjct: 2949 SKLAMDGYNVCLDRNVSIMMNKRIICSGTLQDNLYIINPSQPALQLQHRVLNNTSSTSNK 3008

Query: 388  KFSPSS--PTKLWHLRLGHINLDRINRLVKGGVLPSLEVEPISVCESCLEGKMTKRSFPA 561
            +  PSS   T LWHLRLGHINL RI RLV  G L SL VEP  VCESCLEGKMT R F A
Sbjct: 3009 RKEPSSLNQTYLWHLRLGHINLRRIQRLVVDGPLGSLAVEPFPVCESCLEGKMTNRPFKA 3068

Query: 562  KGNRAGGLLELIHSDVCGPMNIKAREGYLYYVTFIDDY 675
            KGNRA  +L L+HSD+CGPMNI+AR GY Y+VTFIDDY
Sbjct: 3069 KGNRAKEVLGLVHSDLCGPMNIQARGGYEYFVTFIDDY 3106


>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
          Length = 1544

 Score =  219 bits (558), Expect = 4e-62
 Identities = 117/224 (52%), Positives = 150/224 (66%), Gaps = 10/224 (4%)
 Frame = +1

Query: 34   KGFQVSRELDDGEISFSLGTEARVSAAAVGVIRLSFPGNKILILNNALYVPNIRRNLISV 213
            +GFQ +R+L  GE++  LG  + V+  AVG I L+F  N+ L L N LYVP+IRRNLI +
Sbjct: 628  QGFQETRQLSKGEVNIFLGNGSEVAVLAVGNIALNFKNNRTLFLKNVLYVPSIRRNLIPI 687

Query: 214  PSLALQGYTCMFGQ----DLVIKINGNFVCSGKLSNGLYFVNPTV------MEVNNSEIV 363
             SL+  GY+  F +     +VIK     +CSG L + LY +  T        EVNN +IV
Sbjct: 688  SSLSKNGYSVCFNEFYDDSVVIKFREQMICSGSLIDSLYILKVTPELQLTNSEVNNFDIV 747

Query: 364  KSVLPKKRKFSPSSPTKLWHLRLGHINLDRINRLVKGGVLPSLEVEPISVCESCLEGKMT 543
              +  K+++    S T LWHLRLGHINLDRI+ LVK G L SL+VE +  CESCLEGKMT
Sbjct: 748  APL--KRKRPIELSYTYLWHLRLGHINLDRISLLVKDGPLSSLKVEALPTCESCLEGKMT 805

Query: 544  KRSFPAKGNRAGGLLELIHSDVCGPMNIKAREGYLYYVTFIDDY 675
            KR FP KGNRA  +LELIHSD+CGPM+++AR G+ Y+VTF DDY
Sbjct: 806  KRPFPLKGNRANDVLELIHSDLCGPMSVQARGGFEYFVTFTDDY 849


>emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]
          Length = 1285

 Score =  219 bits (557), Expect = 6e-62
 Identities = 120/222 (54%), Positives = 150/222 (67%), Gaps = 8/222 (3%)
 Frame = +1

Query: 34  KGFQVSRELDDGEISFSLGTEARVSAAAVGVIRLSFPGNKILILNNALYVPNIRRNLISV 213
           +GFQ +R+L  GE++  LG    V+  AVG I L+F  N+IL L N LYVP+IRRNLISV
Sbjct: 276 QGFQETRQLSKGEVNIFLGDGTEVAVLAVGNIALNFKNNRILSLKNVLYVPSIRRNLISV 335

Query: 214 PSLALQGYTCMFGQ----DLVIKINGNFVCSGKLSNGLYFVNPTV-MEVNNSEI--VKSV 372
            SL+  GY+  F +     +VIK     +CSG L +GLY +  T  +++ NSE+     V
Sbjct: 336 SSLSKNGYSVCFNEFYDDSVVIKFREQIICSGSLIDGLYILKVTPELQLTNSEVNNFDIV 395

Query: 373 LPKKRKFSPS-SPTKLWHLRLGHINLDRINRLVKGGVLPSLEVEPISVCESCLEGKMTKR 549
            P KRK     S T LWHLRLGHINLDRI+ LVK G L SL+VE +  CESCLEGKMT R
Sbjct: 396 APLKRKCPIELSYTYLWHLRLGHINLDRISLLVKDGPLSSLKVEALPTCESCLEGKMTNR 455

Query: 550 SFPAKGNRAGGLLELIHSDVCGPMNIKAREGYLYYVTFIDDY 675
            FP KGNRA  +LELIHSD+CGPM+++AR G+ Y+VTF  DY
Sbjct: 456 PFPLKGNRANDVLELIHSDLCGPMSVQARGGFEYFVTFTYDY 497


>gb|EXB35423.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
           notabilis]
          Length = 443

 Score =  187 bits (475), Expect = 1e-53
 Identities = 104/207 (50%), Positives = 131/207 (63%), Gaps = 3/207 (1%)
 Frame = +1

Query: 55  ELDDGEISFSLGTEARVSAAAVGVIRLSFPGNKILILNNALYVPNIRRNLISVPSLALQG 234
           EL DG+    +G  ARV+A AVG +RL F  NK L+LNN  ++P+IRRNLIS+  L  Q 
Sbjct: 227 ELADGDYMIKVGNGARVTAKAVGEVRLHFRENKFLVLNNVYFIPDIRRNLISMSKLFEQF 286

Query: 235 YTCMFGQDLV-IKINGNFVCSGKLSNGLYFVNPTVMEVNNSEIVKSVLPK--KRKFSPSS 405
           +   F  D V I  NG  + SG+L +GLY + P    + N+E+ +   PK  K+K S  +
Sbjct: 287 FKVYFVNDFVHISRNGLNIYSGRLDDGLYCIKPIPNSLLNTEMFRVAEPKNKKQKISHEN 346

Query: 406 PTKLWHLRLGHINLDRINRLVKGGVLPSLEVEPISVCESCLEGKMTKRSFPAKGNRAGGL 585
            T LWHL LGHINL+RI RLVK G L  L V  + VC SCLEGKMTKR F AKG  A   
Sbjct: 347 NTYLWHLGLGHINLNRIERLVKDGPLRELTVGELLVCRSCLEGKMTKRPFTAKGKIATKP 406

Query: 586 LELIHSDVCGPMNIKAREGYLYYVTFI 666
           L+ IH DVCGP+N++AR GY YY   +
Sbjct: 407 LQPIHLDVCGPLNVQARGGYEYYAPLL 433


>gb|ADJ18449.1| gag/pol protein, partial [Bryonia dioica]
          Length = 1292

 Score =  187 bits (474), Expect = 1e-50
 Identities = 104/210 (49%), Positives = 138/210 (65%), Gaps = 2/210 (0%)
 Frame = +1

Query: 52  RELDDGEISFSLGTEARVSAAAVGVIRLSFPGNKILILNNALYVPNIRRNLISVPSLALQ 231
           ++L +GEI+  +GT   VSA AVG + L F  ++ LIL + LYVP ++RNLIS+  +   
Sbjct: 322 KKLKEGEITLKVGTGEVVSAEAVGDLTLFFQ-DRYLILKDVLYVPLMKRNLISIACILEH 380

Query: 232 GYTCMFG-QDLVIKINGNFVCSGKLSNGLYFVNPTVMEVN-NSEIVKSVLPKKRKFSPSS 405
            YT  F   ++ I   G  +CS    N LY + PT   V  N+E+ +++  + +K   SS
Sbjct: 381 IYTISFEVNEVFILCKGIQICSAIRENNLYKLRPTRANVVLNTEMFRTLETQNKKQKVSS 440

Query: 406 PTKLWHLRLGHINLDRINRLVKGGVLPSLEVEPISVCESCLEGKMTKRSFPAKGNRAGGL 585
              LWHLRLGHINL+RI RLVK G+L  LE   +  CESCLEGKMTKRSF  KG RA   
Sbjct: 441 NAYLWHLRLGHINLNRIERLVKSGILNQLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVP 500

Query: 586 LELIHSDVCGPMNIKAREGYLYYVTFIDDY 675
           LEL+HSD+CGPMN+KAR GY Y+++FIDD+
Sbjct: 501 LELVHSDLCGPMNVKARGGYEYFISFIDDF 530


>gb|AMY96445.1| gag/pol protein [Momordica dioica]
          Length = 1313

 Score =  171 bits (433), Expect = 3e-45
 Identities = 94/209 (44%), Positives = 128/209 (61%), Gaps = 2/209 (0%)
 Frame = +1

Query: 52  RELDDGEISFSLGTEARVSAAAVGVIRLSFPGNKILILNNALYVPNIRRNLISVPSLALQ 231
           R L +GEI+  +G  ++V A AVG + L F    ++ LNN   VP ++RNLIS+  +   
Sbjct: 328 RRLKEGEITMRVGNGSKVDAEAVGDLTLFFQDRYVMNLNNCYLVPLMKRNLISIACILEH 387

Query: 232 GYTCMFG-QDLVIKINGNFVCSGKLSNGLYFVNPTVMEVN-NSEIVKSVLPKKRKFSPSS 405
            YT  F   ++ I   G  +C   +  G Y + PT   V  N+  + ++  + +K +  S
Sbjct: 388 IYTISFEVNEVFILCKGIQICHAPIVRGFYKLRPTRANVVLNTTHIHNLETQNKKQNNDS 447

Query: 406 PTKLWHLRLGHINLDRINRLVKGGVLPSLEVEPISVCESCLEGKMTKRSFPAKGNRAGGL 585
              LWHLRLGHINL+RI +L K G+L  LE   +  CESCLEGKMTKR F  KG RA  L
Sbjct: 448 AMYLWHLRLGHINLNRIEKLHKDGLLEQLEDFSLPPCESCLEGKMTKRPFTGKGLRASDL 507

Query: 586 LELIHSDVCGPMNIKAREGYLYYVTFIDD 672
           LELIH+DVCGPM++KAR GY Y+++F DD
Sbjct: 508 LELIHTDVCGPMSVKARGGYQYFLSFTDD 536


>gb|KYP42262.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 656

 Score =  165 bits (418), Expect = 7e-44
 Identities = 85/214 (39%), Positives = 126/214 (58%), Gaps = 1/214 (0%)
 Frame = +1

Query: 34  KGFQVSRELDDGEISFSLGTEARVSAAAVGVIRLSFPGNKILILNNALYVPNIRRNLISV 213
           +G Q++R L  GE++  +G    V+A A+G + L  P  K+L+L+N  Y+P    N+IS+
Sbjct: 241 QGLQITRRLKKGEVNLQVGNGENVAALALGSVSLIMPTGKVLVLDNCYYIPKFVSNIISI 300

Query: 214 PSLALQGYTCMFGQDLVIKINGN-FVCSGKLSNGLYFVNPTVMEVNNSEIVKSVLPKKRK 390
             L   G+  +F  ++     G+    +G L +G+Y     + +VN + ++     K+++
Sbjct: 301 SMLDKHGFLTIFNNNICSIYRGDDLYVNGYLQHGIY----VLPDVNLNPVMHVSNVKRKR 356

Query: 391 FSPSSPTKLWHLRLGHINLDRINRLVKGGVLPSLEVEPISVCESCLEGKMTKRSFPAKGN 570
               + T LWH RLGHI   RIN+L K G L   + E  + CESCL+GKMTK  F  KG 
Sbjct: 357 DDQVNKTYLWHCRLGHIGEKRINKLHKEGYLDQYDYESYTTCESCLKGKMTKSPFTGKGE 416

Query: 571 RAGGLLELIHSDVCGPMNIKAREGYLYYVTFIDD 672
           RA  LL LIH+DVCGPM I+A+ GY Y++TF DD
Sbjct: 417 RASELLGLIHTDVCGPMKIQAKGGYSYFITFTDD 450


>gb|KYP60044.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 835

 Score =  154 bits (390), Expect = 1e-39
 Identities = 84/198 (42%), Positives = 116/198 (58%), Gaps = 1/198 (0%)
 Frame = +1

Query: 85  LGTEARVSAAAVGVIRLSFPGNKILILNNALYVPNIRRNLISVPSLALQGYTCMFGQD-L 261
           +G  AR S   +GV+ L  P   +L+L + +YVP++RRNLISV +L   GYT  FG   L
Sbjct: 1   MGDGARASVEDIGVVSLCLPSGHVLLLKDVVYVPSMRRNLISVSALDKCGYTFEFGNGKL 60

Query: 262 VIKINGNFVCSGKLSNGLYFVNPTVMEVNNSEIVKSVLPKKRKFSPSSPTKLWHLRLGHI 441
            +  N   V SG L +GLY +N   M VN      SV+  KR     + + LWH RLGHI
Sbjct: 61  AVFFNSITVGSGVLCDGLYMLNLNDMSVN------SVVGHKRSRVDENSSMLWHRRLGHI 114

Query: 442 NLDRINRLVKGGVLPSLEVEPISVCESCLEGKMTKRSFPAKGNRAGGLLELIHSDVCGPM 621
           +  RI RL+K G+L +L+      C  C++GK+T +      NR   +L+LIH+D+CGP+
Sbjct: 115 SRPRIERLIKEGILHNLDFSDFGTCVDCIKGKLTAKVRNKGANRCDDVLQLIHTDMCGPI 174

Query: 622 NIKAREGYLYYVTFIDDY 675
              A  GY Y++TFIDDY
Sbjct: 175 TPIAMGGYRYFITFIDDY 192


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
 gb|AAX92956.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group]
 gb|ABA92827.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1184

 Score =  154 bits (388), Expect = 3e-39
 Identities = 85/215 (39%), Positives = 121/215 (56%), Gaps = 1/215 (0%)
 Frame = +1

Query: 34  KGFQVSRELDDGEISFSLGTEARVSAAAVGVIRLSFPGNKILILNNALYVPNIRRNLISV 213
           +G + SR L  GE+   +G  ARV+A AVG + LS P   +L LNN   +P + +N+IS 
Sbjct: 293 QGLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSRLVLELNNYYCIPALCKNVISA 352

Query: 214 PSLALQGYTCM-FGQDLVIKINGNFVCSGKLSNGLYFVNPTVMEVNNSEIVKSVLPKKRK 390
             L  +GY       D  +  N  F     + +GLY VN       N   V ++  K+++
Sbjct: 353 SCLQAEGYGFRSVDNDCSVYYNDIFYFHAPMMSGLYIVNL------NGYSVYNINAKRQR 406

Query: 391 FSPSSPTKLWHLRLGHINLDRINRLVKGGVLPSLEVEPISVCESCLEGKMTKRSFPAKGN 570
            +  +PT +WH RLGHIN  R+ ++ + G+L S + E    CESCL GKMTK  F  +  
Sbjct: 407 PNDLNPTFIWHCRLGHINEKRMEKIHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSE 466

Query: 571 RAGGLLELIHSDVCGPMNIKAREGYLYYVTFIDDY 675
           RA  LL L+H+DVCGPM+  AR G+ Y+ TF DD+
Sbjct: 467 RASELLALVHTDVCGPMSSTARGGFGYFFTFTDDF 501


>gb|PNX85475.1| copia protein (gag-int-pol protein), partial [Trifolium pratense]
          Length = 540

 Score =  149 bits (377), Expect = 1e-38
 Identities = 92/215 (42%), Positives = 120/215 (55%), Gaps = 6/215 (2%)
 Frame = +1

Query: 49  SRELDDGEISFSLGTEARVSAAAVGVIRLSFPGNKILILNNALYVPNIRRNLISVPSLAL 228
           SR L  GE+   +G  A+V+A AVG   L+ P   I+ L N  YVP I RN+ISV  L  
Sbjct: 242 SRALAKGEVDLRVGNGAKVAALAVGTYDLTLPSGLIIQLLNCYYVPAISRNIISVSCLDK 301

Query: 229 QGYTCMFGQDLVIKINGNFVCSGKLSNGLYFVNPTVMEVNNSEIVKSVLP------KKRK 390
            G++       +IK   N  CS  L N LY      + +N   I+   +P      K+ K
Sbjct: 302 CGFS------FIIK---NKCCSIYLDNILY---ANAIMINGLYILDLDMPVYNINAKRIK 349

Query: 391 FSPSSPTKLWHLRLGHINLDRINRLVKGGVLPSLEVEPISVCESCLEGKMTKRSFPAKGN 570
            +  +PT LWH RLGHIN +RI++L K G+L S + E    C SCL GKMTK  F     
Sbjct: 350 PNELNPTYLWHCRLGHINENRISKLHKDGMLDSFDFESYETCRSCLLGKMTKPPFTGHKE 409

Query: 571 RAGGLLELIHSDVCGPMNIKAREGYLYYVTFIDDY 675
           RA  LL LIH+DVCGP+N  AR G+ Y++TF DD+
Sbjct: 410 RASDLLGLIHTDVCGPLNTPARGGFHYFITFTDDF 444


>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  152 bits (383), Expect = 2e-38
 Identities = 84/215 (39%), Positives = 116/215 (53%), Gaps = 1/215 (0%)
 Frame = +1

Query: 34  KGFQVSRELDDGEISFSLGTEARVSAAAVGVIRLSFPGNKILILNNALYVPNIRRNLISV 213
           +G + SR L  GE++  +G  A V+  AVG + L  P   +L LNN   VP + +N+IS 
Sbjct: 317 QGMRRSRGLRRGEVNLRVGNGASVATVAVGTVPLHLPSGLVLELNNCYCVPTLCQNVISA 376

Query: 214 PSLALQGYTCM-FGQDLVIKINGNFVCSGKLSNGLYFVNPTVMEVNNSEIVKSVLPKKRK 390
             L  +GY          I +   F     L NGLY +N     + N      +  +++ 
Sbjct: 377 SCLQAEGYDFRSMNNGCSIYLRDMFYFHAPLVNGLYVLNLEASPIYN------INTERQL 430

Query: 391 FSPSSPTKLWHLRLGHINLDRINRLVKGGVLPSLEVEPISVCESCLEGKMTKRSFPAKGN 570
            +  +PT +WH RLGHIN  R+ +L K G+L S + E    CESCL GKMTK  F     
Sbjct: 431 SNDINPTFIWHCRLGHINKKRMEKLHKDGLLHSFDFESFETCESCLLGKMTKAPFTGHSE 490

Query: 571 RAGGLLELIHSDVCGPMNIKAREGYLYYVTFIDDY 675
           RA  LL L+H+DVCGPM+  AR GY Y++TF DD+
Sbjct: 491 RASDLLALVHTDVCGPMSSTARGGYQYFITFTDDF 525


>gb|PKI51479.1| hypothetical protein CRG98_028190 [Punica granatum]
          Length = 523

 Score =  147 bits (372), Expect = 6e-38
 Identities = 90/217 (41%), Positives = 123/217 (56%), Gaps = 3/217 (1%)
 Frame = +1

Query: 34  KGFQVSRELDDGEISFSLGTEARVSAAAVGVIRLSFPGNKILILNNALYVPNIRRNLISV 213
           +G   SR L   E+   +G  A V+A AVG   L   G+ +L ++  L +PN  RN+ISV
Sbjct: 129 QGLASSRVLGRNEVCLKIGNRASVAAKAVGSTSLHLDGH-VLFIDRVLVLPNAYRNIISV 187

Query: 214 PSLALQGYTCMFGQDLVIKINGNFVCS-GKLSNGLYFVNPTVMEVNNSEIVKSVLPKKRK 390
            SL   GY   F  D+     GN V   G L +GLY++      + N+  + +V      
Sbjct: 188 SSLTRSGYLFDFKHDVCNIYYGNKVIGVGYLHDGLYYLRARNKTIPNTIEINTV------ 241

Query: 391 FSPSSPT--KLWHLRLGHINLDRINRLVKGGVLPSLEVEPISVCESCLEGKMTKRSFPAK 564
            S S P+  +LWHLRLG++  DRI++L K G++  L  EP S CESC +GKMT+  F  +
Sbjct: 242 -SESIPSLKQLWHLRLGNVADDRISKLEKMGLIIPLGSEPNSTCESCFQGKMTRTPFVGQ 300

Query: 565 GNRAGGLLELIHSDVCGPMNIKAREGYLYYVTFIDDY 675
             RA  +LELIHSDVCGP +  AR GY Y++ F DDY
Sbjct: 301 MERAKEVLELIHSDVCGPFSEMARGGYSYFIIFTDDY 337


>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1063

 Score =  149 bits (376), Expect = 1e-37
 Identities = 83/215 (38%), Positives = 116/215 (53%), Gaps = 1/215 (0%)
 Frame = +1

Query: 34   KGFQVSRELDDGEISFSLGTEARVSAAAVGVIRLSFPGNKILILNNALYVPNIRRNLISV 213
            +G + SR L  G +   +G   RV+  AVG + LS P   +L LNN   +P + +N+IS 
Sbjct: 409  QGLKRSRSLARGRVDIRVGNGERVAVVAVGTMTLSLPSGLVLELNNCYCIPALCKNVISA 468

Query: 214  PSLALQGYTCM-FGQDLVIKINGNFVCSGKLSNGLYFVNPTVMEVNNSEIVKSVLPKKRK 390
              L  +GY          +  N  F     + NGLY VN     V N      +  K++ 
Sbjct: 469  SCLQAEGYGFRSMDNGCSVYYNDLFYFHAPMMNGLYIVNLDGCSVYN------INAKRQH 522

Query: 391  FSPSSPTKLWHLRLGHINLDRINRLVKGGVLPSLEVEPISVCESCLEGKMTKRSFPAKGN 570
             +  +PT +WH RLGHIN  R+ +L + G+L S + E    CESCL GKMTK  F  +  
Sbjct: 523  PNDLNPTFIWHCRLGHINEKRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSK 582

Query: 571  RAGGLLELIHSDVCGPMNIKAREGYLYYVTFIDDY 675
            RA  LL L+H+DVCGPM+  AR G+ Y++TF DD+
Sbjct: 583  RASELLGLVHTDVCGPMSSTARGGFGYFITFTDDF 617


>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1073

 Score =  149 bits (376), Expect = 1e-37
 Identities = 83/215 (38%), Positives = 116/215 (53%), Gaps = 1/215 (0%)
 Frame = +1

Query: 34   KGFQVSRELDDGEISFSLGTEARVSAAAVGVIRLSFPGNKILILNNALYVPNIRRNLISV 213
            +G + SR L  G +   +G   RV+  AVG + LS P   +L LNN   +P + +N+IS 
Sbjct: 409  QGLKRSRSLARGRVDIRVGNGERVAVVAVGTMTLSLPSGLVLELNNCYCIPALCKNVISA 468

Query: 214  PSLALQGYTCM-FGQDLVIKINGNFVCSGKLSNGLYFVNPTVMEVNNSEIVKSVLPKKRK 390
              L  +GY          +  N  F     + NGLY VN     V N      +  K++ 
Sbjct: 469  SCLQAEGYGFRSMDNGCSVYYNDLFYFHAPMMNGLYIVNLDGCSVYN------INAKRQH 522

Query: 391  FSPSSPTKLWHLRLGHINLDRINRLVKGGVLPSLEVEPISVCESCLEGKMTKRSFPAKGN 570
             +  +PT +WH RLGHIN  R+ +L + G+L S + E    CESCL GKMTK  F  +  
Sbjct: 523  PNDLNPTFIWHCRLGHINEKRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSK 582

Query: 571  RAGGLLELIHSDVCGPMNIKAREGYLYYVTFIDDY 675
            RA  LL L+H+DVCGPM+  AR G+ Y++TF DD+
Sbjct: 583  RASELLGLVHTDVCGPMSSTARGGFGYFITFTDDF 617


>gb|EEC73244.1| hypothetical protein OsI_07346 [Oryza sativa Indica Group]
          Length = 487

 Score =  144 bits (363), Expect = 7e-37
 Identities = 84/218 (38%), Positives = 119/218 (54%), Gaps = 4/218 (1%)
 Frame = +1

Query: 34  KGFQVSRELDDGEISFSLGTEARVSAAAVGVIRLSFPGNKILILNNALYVPNIRRNLISV 213
           K F+++R     E S  +  E      AVG + L       L+L +  YVP+++RNLISV
Sbjct: 192 KAFRLTRTTQRRESSIRVANEVEEKVEAVGDLPLELANGFTLLLRDVFYVPSLQRNLISV 251

Query: 214 PSLALQGYTCMFGQDLVIKINGNFVCSGK--LSNGLYFVNPTVMEVNNSEIVKSVLP--K 381
             L   GY C FG     ++  N  C G   L + LY ++ +     N  +V S+    K
Sbjct: 252 SKLDFDGYDCRFGSGKC-ELWHNNACIGLAVLRDELYLLSLS----ENVNVVSSLTKENK 306

Query: 382 KRKFSPSSPTKLWHLRLGHINLDRINRLVKGGVLPSLEVEPISVCESCLEGKMTKRSFPA 561
           KRK +P   +KLWH RL HI+  RI RLVK  +LP LE   +  C  C++GK  K S   
Sbjct: 307 KRKRTPDVSSKLWHCRLDHISRGRIERLVKNEILPPLEFSDLEQCIECIKGKFVK-SIKK 365

Query: 562 KGNRAGGLLELIHSDVCGPMNIKAREGYLYYVTFIDDY 675
              R+ G+LE+IH+D+CGP  +K+ +GY  ++TFIDDY
Sbjct: 366 GAKRSAGILEIIHTDICGPFPVKSVDGYDSFITFIDDY 403


>emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]
          Length = 923

 Score =  147 bits (370), Expect = 8e-37
 Identities = 81/215 (37%), Positives = 117/215 (54%), Gaps = 1/215 (0%)
 Frame = +1

Query: 34  KGFQVSRELDDGEISFSLGTEARVSAAAVGVIRLSFPGNKILILNNALYVPNIRRNLISV 213
           +G + SR L  GE+   +G  ARV+  AVG + LS P   +L LNN   +P + +N+IS 
Sbjct: 276 QGLKRSRSLARGEVDIRVGNGARVAVVAVGTMSLSLPSGLVLELNNCYCIPALCKNVISA 335

Query: 214 PSLALQGYTCM-FGQDLVIKINGNFVCSGKLSNGLYFVNPTVMEVNNSEIVKSVLPKKRK 390
             L  +GY          +  N  F  +  + NGLY VN     V N      +  K+++
Sbjct: 336 SCLQAEGYGFRSVDNGCSVYYNDIFYFNAPMMNGLYIVNLDGCSVYN------INAKRQR 389

Query: 391 FSPSSPTKLWHLRLGHINLDRINRLVKGGVLPSLEVEPISVCESCLEGKMTKRSFPAKGN 570
            +  +PT +WH R GHIN   + +L + G+L S   E    CESCL GKMTK  F  +  
Sbjct: 390 PNDLNPTFIWHCRFGHINEKCMEKLNRDGLLHSFGFESFETCESCLLGKMTKAPFTGQSE 449

Query: 571 RAGGLLELIHSDVCGPMNIKAREGYLYYVTFIDDY 675
           RA  LL L+H+D+CGPM+  A+ G+ Y++TF DD+
Sbjct: 450 RASELLGLVHTDICGPMSSTAKGGFGYFITFTDDF 484


>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group]
 gb|ABA93176.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 938

 Score =  145 bits (367), Expect = 2e-36
 Identities = 83/215 (38%), Positives = 117/215 (54%), Gaps = 1/215 (0%)
 Frame = +1

Query: 34  KGFQVSRELDDGEISFSLGTEARVSAAAVGVIRLSFPGNKILILNNALYVPNIRRNLISV 213
           KG + SR L  GE+   +G  A V A AVG + LS P   +L LNN   +  + +N+IS 
Sbjct: 202 KGLKRSRNLARGEVDIHVGNGASVVAVAVGTMPLSLPSGLVLELNNCYCILALCKNVISA 261

Query: 214 PSLALQGYTCM-FGQDLVIKINGNFVCSGKLSNGLYFVNPTVMEVNNSEIVKSVLPKKRK 390
             L  +GY          +  N  F     + NGLY VN     V N      +  K+++
Sbjct: 262 SCLQAEGYGFRSVDNGCSVYYNDIFYFHAPMMNGLYIVNLDGCSVYN------INAKRQR 315

Query: 391 FSPSSPTKLWHLRLGHINLDRINRLVKGGVLPSLEVEPISVCESCLEGKMTKRSFPAKGN 570
            +  +PT +WH RLGHIN  R+ +L + G+L S + E    CESCL GKMTK  F  +  
Sbjct: 316 PNDLNPTFIWHCRLGHINERRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSE 375

Query: 571 RAGGLLELIHSDVCGPMNIKAREGYLYYVTFIDDY 675
           +A  LL L+H+DVCGPM+  AR G+ Y++TF +D+
Sbjct: 376 KASELLGLVHTDVCGPMSSTARGGFGYFITFTNDF 410


>gb|EXC13109.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
           notabilis]
          Length = 316

 Score =  137 bits (344), Expect = 2e-35
 Identities = 75/132 (56%), Positives = 86/132 (65%)
 Frame = +1

Query: 280 NFVCSGKLSNGLYFVNPTVMEVNNSEIVKSVLPKKRKFSPSSPTKLWHLRLGHINLDRIN 459
           N V + K SN    +N  V E  N         KK+K S  + T LWHLRLGHINL RI 
Sbjct: 172 NIVMNKKKSNLTKLMNDLVAEPKN---------KKQKISHDNNTYLWHLRLGHINLIRIE 222

Query: 460 RLVKGGVLPSLEVEPISVCESCLEGKMTKRSFPAKGNRAGGLLELIHSDVCGPMNIKARE 639
           RL+K G L  L+V    V ESCLEGKMTKR F AKG RA   L+LIHSDVCGP+N++AR 
Sbjct: 223 RLIKDGPLRQLKVGEHPVGESCLEGKMTKRHFTAKGERAKESLQLIHSDVCGPLNVQARG 282

Query: 640 GYLYYVTFIDDY 675
           GY YY+TFIDDY
Sbjct: 283 GYEYYITFIDDY 294


>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1084

 Score =  142 bits (359), Expect = 2e-35
 Identities = 84/215 (39%), Positives = 117/215 (54%), Gaps = 1/215 (0%)
 Frame = +1

Query: 34  KGFQVSRELDDGEISFSLGTEARVSAAAVGVIRLSFPGNKILILNNALYVPNIRRNLISV 213
           +G + SR L  GE+   +G  ARV+A AVG + LS P   +L LNN   +  + +N+IS 
Sbjct: 296 QGLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSGIVLELNNCYCIRALCKNVISA 355

Query: 214 PSLALQGYTCM-FGQDLVIKINGNFVCSGKLSNGLYFVNPTVMEVNNSEIVKSVLPKKRK 390
             L  +GY          +  N  F     + NGLY VN     V N      +  K++ 
Sbjct: 356 SCLQAEGYGFRSVDNGCSVYYNDIFYFHVPMMNGLYIVNLDGCSVYN------INAKRQC 409

Query: 391 FSPSSPTKLWHLRLGHINLDRINRLVKGGVLPSLEVEPISVCESCLEGKMTKRSFPAKGN 570
            +  +PT +WH RLGHIN  R+ +L + G+L S + E     ESCL GKMTK  F  +  
Sbjct: 410 PNYLNPTFIWHCRLGHINEKRMEKLHRDGLLHSFDFESFKTYESCLLGKMTKGPFTGQSE 469

Query: 571 RAGGLLELIHSDVCGPMNIKAREGYLYYVTFIDDY 675
           RA  LL L+H+DVCGPM+  AR G+ Y++TF DD+
Sbjct: 470 RASELLGLVHTDVCGPMSSTARGGFGYFITFTDDF 504


>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1142

 Score =  142 bits (359), Expect = 2e-35
 Identities = 84/215 (39%), Positives = 117/215 (54%), Gaps = 1/215 (0%)
 Frame = +1

Query: 34  KGFQVSRELDDGEISFSLGTEARVSAAAVGVIRLSFPGNKILILNNALYVPNIRRNLISV 213
           +G + SR L  GE+   +G  ARV+A AVG + LS P   +L LNN   +  + +N+IS 
Sbjct: 369 QGLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSGIVLELNNCYCIRALCKNVISA 428

Query: 214 PSLALQGYTCM-FGQDLVIKINGNFVCSGKLSNGLYFVNPTVMEVNNSEIVKSVLPKKRK 390
             L  +GY          +  N  F     + NGLY VN     V N      +  K++ 
Sbjct: 429 SCLQAEGYGFRSVDNGCSVYYNDIFYFHVPMMNGLYIVNLDGCSVYN------INAKRQC 482

Query: 391 FSPSSPTKLWHLRLGHINLDRINRLVKGGVLPSLEVEPISVCESCLEGKMTKRSFPAKGN 570
            +  +PT +WH RLGHIN  R+ +L + G+L S + E     ESCL GKMTK  F  +  
Sbjct: 483 PNYLNPTFIWHCRLGHINEKRMEKLHRDGLLHSFDFESFKTYESCLLGKMTKGPFTGQSE 542

Query: 571 RAGGLLELIHSDVCGPMNIKAREGYLYYVTFIDDY 675
           RA  LL L+H+DVCGPM+  AR G+ Y++TF DD+
Sbjct: 543 RASELLGLVHTDVCGPMSSTARGGFGYFITFTDDF 577