BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00017717
         (2956 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDP17738.1| unnamed protein product [Coffea canephora]             96   2e-68
gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo...   102   1e-60
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v...   103   2e-55
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]      79   1e-45
gb|ONK68196.1| uncharacterized protein A4U43_C05F8640 [Asparagus...   114   1e-44
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711...    80   2e-44
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]      74   9e-40
gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]           72   1e-39
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...    75   1e-39
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...    76   1e-36
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]      76   1e-36
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]          79   2e-36
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]    74   6e-36
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa]                         77   8e-36
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...    66   4e-35
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...    72   4e-34
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa]                         74   2e-32
emb|CDP17739.1| unnamed protein product [Coffea canephora]             77   8e-32
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc...    72   1e-29
gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposo...    69   2e-29

>emb|CDP17738.1| unnamed protein product [Coffea canephora]
          Length = 798

 Score = 95.5 bits (236), Expect(6) = 2e-68
 Identities = 65/220 (29%), Positives = 112/220 (50%)
 Frame = -3

Query: 2303 FSVEGGTSIANHMNVYIKLLAVLANVDEVIADEVKALILLSSLPDEYETFVMTLINDKSS 2124
            F  + GT++  H+ ++ +L+A L N+D    DE  AL+LLSSLPDE+E    TL++ K +
Sbjct: 137  FDYQPGTTMNEHITIFNQLVADLLNLDVNFEDEDLALMLLSSLPDEFEHLETTLLHGKEN 196

Query: 2123 LSYNDVFAALVNYELRRKDWKSSSGKLAETLSV*VPARRTTATGKVNV*IR*ISCGKILV 1944
            +S + V +AL + ELR++D K      A+   V    +++ + G+           K   
Sbjct: 197  VSLDAVCSALYSRELRKQDKKKKKVAAADEALVARGRQQSQSKGRRGWSKSISRVAKDEC 256

Query: 1943 CVLQAERALEEGLPRVQEEIEAK**ACIRDQHR*IGWXXXXXXXXXXXSPNICYSDVSEW 1764
               + +   ++  P+++++ +A        Q   +             + +   S   EW
Sbjct: 257  AFCREKGHWKKDCPKLKKKGKA-------PQDVNVAECKSDAESDFSLAVSRLTSHPDEW 309

Query: 1763 MLHSSVTYHIYPKREWFSSFEKLDNGVVFMGDCHACRIVG 1644
            +L S+ TYH+ P REWF  FE+LD G V+MG+ + C+ VG
Sbjct: 310  ILDSTCTYHMTPMREWFFEFEELDGGFVYMGNDNPCKTVG 349



 Score = 82.8 bits (203), Expect(6) = 2e-68
 Identities = 58/161 (36%), Positives = 83/161 (51%), Gaps = 8/161 (4%)
 Frame = -1

Query: 1645 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXLFEW*N-LYSCH 1469
            GI +I +R +DG  R L +VRY   LK++LI LG              + +  +      
Sbjct: 349  GIGSIKLRNHDGSTRILKDVRYVPNLKRSLISLGLLESKGLEVRMRDGILKVTSGALLML 408

Query: 1468 ERRQRTKLVLSQRNTMTNHVMASV------DSDTIKLGHRSLRHTDEKSLQVLAKQGLLN 1307
            +  ++  L   Q +T+      +       D++  KL H  L    EKSLQ LAKQGLL 
Sbjct: 409  KGVRKNNLYYYQGSTVVGTAAVATSSSSKKDAEATKLWHMRLGDAGEKSLQNLAKQGLLK 468

Query: 1306 DAKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1187
              K CK+ F E+C+L K+++VKF T IH T+  LD+VH DV
Sbjct: 469  GTKVCKLEFCEHCVLEKQRKVKFGTGIHNTKGILDYVHSDV 509



 Score = 78.6 bits (192), Expect(6) = 2e-68
 Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 7/161 (4%)
 Frame = -2

Query: 1185 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRS--RYFHQMKKCIELQTGRKIKVSSV 1012
            G AK  SL G+Y FV ++DD++R + ++    K    + F + K  +E QTGRKIK+   
Sbjct: 511  GPAKTPSLGGRYYFVTFIDDFSRRVWVFTMKSKDEMLKIFLKWKARVENQTGRKIKILRT 570

Query: 1011 IM---VESTRVALFYSYVGI*SIKIL--YCQGNTATKWDCRKSELYIAGEGMMLSNLGLK 847
                  +S          GI    I+    Q N  ++     ++  +     MLSN GL 
Sbjct: 571  DNGGEYKSDPFQKICQECGIVRHFIVRKIPQQNGVSE---HMNKTLVEKVRCMLSNAGLG 627

Query: 846  NNF*VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYD 724
              F  E +TYA HL NRL SSAI  KT +EVWSG+ A DYD
Sbjct: 628  RKFWAEAVTYAQHLVNRLPSSAIGGKTPLEVWSGKLATDYD 668



 Score = 44.3 bits (103), Expect(6) = 2e-68
 Identities = 24/51 (47%), Positives = 32/51 (62%)
 Frame = -2

Query: 2610 KIDMVKFDGTNNFGMWRCEVLDVLNCQNLEDILNLNVRPVDIEEKIWNKMN 2458
            K+ +  FDGT +FGMW+ EV+D L  Q L DI     +  DIEEK W+ +N
Sbjct: 34   KVAVETFDGTGHFGMWQGEVMDSLFQQGL-DIAIEEKKSDDIEEKEWSTIN 83



 Score = 40.4 bits (93), Expect(6) = 2e-68
 Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 22/127 (17%)
 Frame = -1

Query: 718  IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQ--IS*QVETDVSPQ--- 554
            IF  +AYY V   KLDPRA+K +F+ F  GV   ++     ++  IS  V  D S     
Sbjct: 672  IFDSTAYYHVNESKLDPRAKKALFMGFSAGVKGYRLWYLEAKKTIISRDVTFDESVMLNK 731

Query: 553  -----TSVTTVSFD-TPLEVTQQATQVTDMTDTLGG-----EDSEYQE------GQVQDS 425
                 TS T    + TP +V  +   V+    T+       E+S+ +E       Q Q S
Sbjct: 732  ITQDGTSGTPQQVECTPKQVEFEQIVVSPANSTISDSPMAEEESDEEEVSTQEPQQQQKS 791

Query: 424  IAVRKSK 404
            IAV +++
Sbjct: 792  IAVNRAR 798



 Score = 32.0 bits (71), Expect(6) = 2e-68
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -1

Query: 2434 CLTQDLKYHVMYEISARKILEILKSYYLTKSIGNRLHLNGRFYRFQLKGG 2285
            CL+++ KY    E SA K+ + L+  +L KS  N+L +    +RF  + G
Sbjct: 93   CLSKEQKYAFKNETSAWKLWKALEGKFLKKSGQNKLLMKKILFRFDYQPG 142


>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1032

 Score =  102 bits (253), Expect(5) = 1e-60
 Identities = 74/205 (36%), Positives = 101/205 (49%), Gaps = 20/205 (9%)
 Frame = -1

Query: 718  IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQ--IS*QVETDVSPQTSV 545
            +FGC+AYY VK  KLDPRA+K IF+    GV   ++    T++  IS  V  D S     
Sbjct: 435  VFGCTAYYHVKESKLDPRAKKAIFMGIASGVKGYRLWCLETKKTIISRDVTFDESTMLGK 494

Query: 544  TT-----------VSFDTPLEVTQQATQVTDMTDTLGGEDSEYQEGQVQ------DSIAV 416
             T           V F+  +       + T M D    E+S+ +E  +Q      +SIA+
Sbjct: 495  VTTEQKKNGTPKQVEFERKIVFPANDEEKTPMVD----EESDEEEVHIQEPPQQLESIAL 550

Query: 415  RKSKRNTKMSGWLSKDMMVAYTLSVV*KSVPSTLRKVEVSVKSDKWKYVVMEEMDSLLKN 236
            RK KR T M        MV+Y   V    +P+T  +     + DKW+  + EEM+SL +N
Sbjct: 551  RKPKRTTIMPARYVD--MVSYASPVASDDIPTTYIEAVKGSEEDKWRSAMSEEMESLRRN 608

Query: 235  -TWILPKLSKGNKVIGCK*VFAMKD 164
             TW L  L KG K IGCK V+A KD
Sbjct: 609  QTWKLANLPKGKKAIGCKWVYAKKD 633



 Score = 82.0 bits (201), Expect(5) = 1e-60
 Identities = 59/160 (36%), Positives = 85/160 (53%), Gaps = 7/160 (4%)
 Frame = -1

Query: 1645 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXLFEW*N--LYSC 1472
            GI +I ++  DG  R L +VR+  +L +NLI +GA             + +  +  L   
Sbjct: 113  GIGSIRLKNRDGAIRTLKDVRFVPSLSRNLISVGALEEKGFTVHAEGGVMKIISGALVVM 172

Query: 1471 HERRQRTKLVLSQRNTMTNHV-MASVDS---DTIKLGHRSLRHTDEKSLQVLAKQGLLND 1304
               R+  +L   Q  T+     +AS D    ++ KL H  L H  E+SL +L KQGLL +
Sbjct: 173  KGVRKNNRLYYYQGTTIIGTAAVASSDEKELESAKLWHMRLGHAGERSLNLLMKQGLLKN 232

Query: 1303 AKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1187
             + CK+ F E+C+  KK RVKF TAIH T+  LD+VH DV
Sbjct: 233  IQACKLDFCEHCVKGKKTRVKFGTAIHDTKGILDYVHSDV 272



 Score = 70.5 bits (171), Expect(5) = 1e-60
 Identities = 56/166 (33%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
 Frame = -2

Query: 1185 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRS--RYFHQMKKCIELQTGRKIK---- 1024
            G +K  SL G + +V +VDD++R + +Y    K      F + KK +E QTGRKIK    
Sbjct: 274  GPSKTASLAGNHYYVTFVDDFSRRIWVYAMKTKDEVLGIFLKWKKRMETQTGRKIKHFRT 333

Query: 1023 ------VSSVIMVESTRVALFYSYVGI*SIKILYCQGNTATKWDCRKSELYIAGEGMMLS 862
                   S           +   +    ++K    Q   A     R +   +     MLS
Sbjct: 334  DNGGEYTSDPFKKACEESGIVRHF----TVKHTPQQNGVAE----RMNRTLLEKVRCMLS 385

Query: 861  NLGLKNNF*VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYD 724
            N GL   F  E + YA+HL NRL SSAI  KT +E W G+ A DYD
Sbjct: 386  NAGLGKQFWAEAVVYASHLINRLPSSAIGGKTPLEKWFGKPATDYD 431



 Score = 40.0 bits (92), Expect(5) = 1e-60
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 1781 SDVSEWMLHSSVTYHIYPKREWFSSFEKLDNGVVF 1677
            S  S W+L S  + H+ P REWF  F +L+ GVV+
Sbjct: 68   SSSSAWLLDSGCSNHMCPNREWFYDFRELEEGVVY 102



 Score = 33.1 bits (74), Expect(5) = 1e-60
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = -3

Query: 152 DVHYKARLTAKGYAQKEDV 96
           +V YKARL AKGYAQKE +
Sbjct: 640 EVRYKARLVAKGYAQKEGI 658


>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 813

 Score =  103 bits (258), Expect(3) = 2e-55
 Identities = 92/283 (32%), Positives = 124/283 (43%), Gaps = 17/283 (6%)
 Frame = -1

Query: 1984 MSRSDRLVVEKY*CAFCKQNEHWXXXXXXXXXXXKQNSKHASEINIV--KSDGND*FFYI 1811
            MS+S   VV K  CAFC +  HW            +  K   + N+   KSD       I
Sbjct: 157  MSKSKGRVVAKDECAFCHEKGHWKKDCPKLQ----KKEKVPQDANVAECKSDVESDISLI 212

Query: 1810 FFPLVLIFVTQMCL-SGCFIAVLPITSTLRGNGSPASRSWTMEWYSWAIAM-------RA 1655
                   +  +  L SGC   + PI            R W  E+      +         
Sbjct: 213  VSLSASSYPDEWILDSGCTYHMCPI------------RDWFFEFQELDGGVVYMGNDNPC 260

Query: 1654 E*WGICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXLFE-W*NLY 1478
            +  GI +I +R +DG  R L +VRY   LKKNLI LGA             + +      
Sbjct: 261  KTVGIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATLGAL 320

Query: 1477 SCHERRQRTKLVLSQRNTMTNHVMASV-----DSDTIKLGHRSLRHTDEKSLQVLAKQGL 1313
               +   +  L   Q +T+   V A+      D++  KL H  L H  EKSLQ+L KQGL
Sbjct: 321  VMLKGVMKNNLYYYQGSTVVGTVAAATSSSKKDAEAAKLWHMRLGHAGEKSLQILTKQGL 380

Query: 1312 LNDAKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1187
            L   K CK+ F E+C+L K++RVKF TAIH T+  LD+VH DV
Sbjct: 381  LKGTKACKLEFCEHCVLGKQRRVKFGTAIHNTKGILDYVHSDV 423



 Score = 88.6 bits (218), Expect(3) = 2e-55
 Identities = 74/210 (35%), Positives = 103/210 (49%), Gaps = 25/210 (11%)
 Frame = -1

Query: 718  IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQV-----------------ENTTTRQ 590
            +FG  AYY V   KLDPRA+K +F+ F  GV   ++                 E+   ++
Sbjct: 586  VFGSIAYYHVIESKLDPRAKKALFMGFSPGVKGYRLWCLEKKKTIISRDVTFDESVMLKK 645

Query: 589  IS*QVETDVSPQTSVTTVSFDTPLEVTQQ-ATQVTDMTDTLGGEDSEYQEGQVQDS---- 425
            ++ +  TD +PQ  V  V      E T    T+ T     +  E+S+ +E   Q+S    
Sbjct: 646  VNPE-GTDSTPQ-QVECVRKQVEFEPTVVIPTRNTTSDSPMAEEESDEEEVPTQESQQQS 703

Query: 424  --IAVRKSKRNTKMSGWLSKDMMVAYTLSVV*KSVPSTLRKVEVSVKSDKWKYVVMEEMD 251
              IAVR+ +R+ +         MVAY L VV   +PST   V +S +S  W   + EEM 
Sbjct: 704  APIAVRRQRRDIQKPARFMD--MVAYALPVV-DDIPSTYPGVILSSESGNWAGAMEEEMQ 760

Query: 250  SLLKN-TWILPKLSKGNKVIGCK*VFAMKD 164
            SL KN TW L +L KG K IGCK VFA K+
Sbjct: 761  SLKKNKTWKLTQLPKGKKAIGCKWVFAKKE 790



 Score = 76.6 bits (187), Expect(3) = 2e-55
 Identities = 57/158 (36%), Positives = 78/158 (49%), Gaps = 4/158 (2%)
 Frame = -2

Query: 1185 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRS--RYFHQMKKCIELQTGRKIKVSSV 1012
            G AK  S+ G++ FV +VDD++R + ++    K      F + K  +E  TGRKIKV   
Sbjct: 425  GPAKTPSIGGRHYFVTFVDDFSRRVWVFTMKNKNDVLEIFLKWKAEVENHTGRKIKVLQT 484

Query: 1011 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDC--RKSELYIAGEGMMLSNLGLKNNF 838
                  +   F +      I   +    T  +     R ++  +     MLSN  L   F
Sbjct: 485  DNGGEYKSDPFLNVCQDCGIVRHFTVRKTPQQNGVSERMNKTLVEKVCCMLSNAELGREF 544

Query: 837  *VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYD 724
              E +TYA HL NRL SSAID KT +EVWSG+ A DYD
Sbjct: 545  WAEAVTYAQHLVNRLPSSAIDGKTPLEVWSGKPATDYD 582


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score = 78.6 bits (192), Expect(5) = 1e-45
 Identities = 67/212 (31%), Positives = 100/212 (47%), Gaps = 27/212 (12%)
 Frame = -1

Query: 718  IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQIS*QVETDVSPQTSV-- 545
            +FGC+AY  V NGKL+PRA K IF+ +  GV   ++    T+++   +  +V    SV  
Sbjct: 633  VFGCTAYAHVDNGKLEPRAIKCIFLGYASGVKGYKLWCPETKKV--VISRNVVFHESVIL 690

Query: 544  -TTVSFDTPLEVTQQAT------------------QVTDMTDTLGGEDSEYQEGQVQDSI 422
                S + P+E  ++A+                   +      +   DS       + SI
Sbjct: 691  HDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVHQSPKRSI 750

Query: 421  AVRKSKRNTK-MSGWLSKDMMVAYTLSVV*K----SVPSTLRKVEVSVKSDKWKYVVMEE 257
            A  K KRN K    ++ +  +VAY LSV  K    + PST  +  VS   ++W   + +E
Sbjct: 751  AKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHDE 810

Query: 256  MDSLLKN-TWILPKLSKGNKVIGCK*VFAMKD 164
            M+SL KN TW L KL K  K I CK +F  K+
Sbjct: 811  MESLEKNHTWELVKLPKEKKPIRCKWIFKRKE 842



 Score = 73.2 bits (178), Expect(5) = 1e-45
 Identities = 56/159 (35%), Positives = 77/159 (48%), Gaps = 6/159 (3%)
 Frame = -1

Query: 1645 GICTINIRMYDGMARKLIEVRYALALKKNLI-LLGAFVXXXXXXXXXXXLFEW*NLYSCH 1469
            GI T+ I+M+DG  R L +V++   LK++LI L G                +  NLY   
Sbjct: 325  GIGTVQIKMFDGCIRTLSDVQHIPNLKRSLISLYGILKVTKGSLVVMKVDIKSANLYHL- 383

Query: 1468 ERRQRTKLVLSQRNTMTNHVMASVDS----DTIKLGHRSLRHTDEKSLQVLAKQGLLNDA 1301
                       +  T+  +V A  DS    D   L H  L H  E  L  L+K+GLL+  
Sbjct: 384  -----------RGTTILGNVAAVFDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQ 432

Query: 1300 KTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1187
               K+ F E+CI  K KRVKF+T+ H TE  LD+VH D+
Sbjct: 433  SIRKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 471



 Score = 66.2 bits (160), Expect(5) = 1e-45
 Identities = 55/163 (33%), Positives = 73/163 (44%), Gaps = 4/163 (2%)
 Frame = -2

Query: 1185 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1012
            G A  TS  G    +  VDDY+R++  Y    K   +  F + K  +E QT RK+K+   
Sbjct: 473  GPAHKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEWKTMVERQTERKVKILRT 532

Query: 1011 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDC--RKSELYIAGEGMMLSNLGLKNNF 838
                     +F SY     I   Y   +T  + D   R +   I+    MLSN GL   F
Sbjct: 533  DNGMEFCSKIFKSYCKSEGIVCHYTAPHTPQQNDVAERMNRTIISKARCMLSNAGLPKQF 592

Query: 837  *VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 709
              E ++ A +L NR    AID+KT IEVWSG      DL   G
Sbjct: 593  WAEAVSTACYLINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFG 635



 Score = 32.3 bits (72), Expect(5) = 1e-45
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 1724 REWFSSFEKLDNGVVFMGDCHACRIVG 1644
            ++WF+++E L  G V MGD   C + G
Sbjct: 299  QDWFATYEALQGGTVLMGDDTPCEVAG 325



 Score = 25.8 bits (55), Expect(5) = 1e-45
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 152 DVHYKARLTAKGYAQ 108
           +  YKARL AKGY+Q
Sbjct: 849 EARYKARLVAKGYSQ 863


>gb|ONK68196.1| uncharacterized protein A4U43_C05F8640 [Asparagus officinalis]
          Length = 631

 Score =  114 bits (284), Expect(2) = 1e-44
 Identities = 108/367 (29%), Positives = 156/367 (42%), Gaps = 25/367 (6%)
 Frame = -1

Query: 1987 SMSRSDRLVVEKY*CAFCKQNEHWXXXXXXXXXXXKQNSK--HASEINIVKSDGND*--F 1820
            S SRS   + +   CAFCK+ EHW               K   A+E+N+ K D +D   F
Sbjct: 198  SKSRSHHQLAKNQ-CAFCKEQEHWKRDCPKLKEKENCKKKGPKANEVNVAKGDDSDDSCF 256

Query: 1819 FYIFFPLV--LIFVTQMCLSGCFIAVLPITS------------TLRGNGSPASRSWTMEW 1682
              +  P V  +  +  M  SG    V P                + GN    S  W    
Sbjct: 257  SLLITPEVNHVDVLDWMLDSGATYHVTPRRDWFASFEKVDGGVVVMGNDQFCSVCW---- 312

Query: 1681 YSWAIAMRAE*WGICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXX 1502
                         I T+ IRM+DG+ R+L EVR+   LKKN+I +GA             
Sbjct: 313  -------------IGTVRIRMHDGVVRELKEVRFVPQLKKNIISVGAL------------ 347

Query: 1501 LFEW*NLYSCHERRQRTKLVLSQRNTMTNHVMASVDSDTIKLGHRSLRHTDEKSLQVLAK 1322
                        +R +    +SQ        +A  ++D  KL H  L HT E SLQ+L K
Sbjct: 348  ----------EAKRFKGSTEISQV------ALAISEADISKLWHYRLGHTSENSLQILCK 391

Query: 1321 QGLLNDAKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDVGICQEHIA*R*VXX 1145
            Q LL  AK+ K+ F E+C+L KK +VKF T+IH+T   +D++H DV    ++++   +  
Sbjct: 392  QRLLKGAKSGKIEFCEHCVLGKKTKVKFGTSIHQTRGIMDYMHTDVWGLTKNVS---LGG 448

Query: 1144 XXXXXXXXXXXXXISWLV------KEI*IFSSNEKVY*IADR*KNQGIKCDNGGEYTSSS 983
                           W+       + + IF   +K   +    K + ++ DNGGEYTS  
Sbjct: 449  QHWFVTFVDDYSRHCWVYTMTKKSEVLDIFVEWKKRLELQTGRKIKTLRSDNGGEYTSDP 508

Query: 982  FL*LCRD 962
            F  LCRD
Sbjct: 509  FQQLCRD 515



 Score = 97.8 bits (242), Expect(2) = 1e-44
 Identities = 53/94 (56%), Positives = 70/94 (74%), Gaps = 2/94 (2%)
 Frame = -3

Query: 2303 FSVEGGTSIANHMNVYIKLLAVLANVDEVIADEVKALILLSSLPD-EYETFVMTLINDKS 2127
            F +  GTS+A H+N Y KLL+ LANVDE I+DE KA+ LL SLPD EY+TFV+ L+N +S
Sbjct: 89   FQMSRGTSLATHVNNYTKLLSNLANVDEKISDEYKAIFLLGSLPDEEYDTFVLILLNGRS 148

Query: 2126 SLSYNDVFAALVNYELRRKDWKSSSGKLA-ETLS 2028
            S+ Y++V  AL NY+LRRKD ++S    + ETLS
Sbjct: 149  SIIYSEVTNALTNYDLRRKDKETSRASTSGETLS 182



 Score = 57.0 bits (136), Expect(2) = 9e-10
 Identities = 31/68 (45%), Positives = 42/68 (61%)
 Frame = -1

Query: 2479 EDLEQNECDVQSDKVCLTQDLKYHVMYEISARKILEILKSYYLTKSIGNRLHLNGRFYRF 2300
            E + +N C V   + CL Q+LKY+V+   S  K+ EIL + YLTKS+ NRLHL  R + F
Sbjct: 32   EKMNRNACGVI--RSCLEQELKYNVIGVTSVMKMWEILNNKYLTKSVENRLHLLRRLFGF 89

Query: 2299 QLKGGPQL 2276
            Q+  G  L
Sbjct: 90   QMSRGTSL 97



 Score = 37.7 bits (86), Expect(2) = 9e-10
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = -2

Query: 2556 EVLDVLNCQNLEDILNLNVRPVDIEEKIWNKMN 2458
            +V D LN QNLE+ + ++ RP   +E IW KMN
Sbjct: 3    DVQDALNAQNLEETIMVHERPPKYDEAIWEKMN 35


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
 gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 80.1 bits (196), Expect(5) = 2e-44
 Identities = 68/211 (32%), Positives = 98/211 (46%), Gaps = 27/211 (12%)
 Frame = -1

Query: 715  FGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQI----------S*QVETD 566
            FGC+AYY V  GKL+PRA+K +F+ +  GV   ++ +   +++          S  + T 
Sbjct: 640  FGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESPLLRTI 699

Query: 565  VSPQTSVTTVSFDTPLEVTQQATQVTDMTDTLGGEDSEYQEGQ------------VQDSI 422
            V P T+  T S D  +E      QV      L   + E QE Q            +  SI
Sbjct: 700  VKPTTTSETGSLDKQVEF-----QVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSI 754

Query: 421  AVRKSKR-NTKMSGWLSKDMMVAYTLSV---V*KSVPSTLRKVEVSVKSDKWKYVVMEEM 254
            A  + +R   +       + MV Y L V   V  S PST ++  +S  S+KW   + +EM
Sbjct: 755  AQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEM 814

Query: 253  DSLLKN-TWILPKLSKGNKVIGCK*VFAMKD 164
            +SL KN TW L     G K+I CK VF  K+
Sbjct: 815  ESLHKNQTWDLVIQPSGRKIITCKWVFKKKE 845



 Score = 65.1 bits (157), Expect(5) = 2e-44
 Identities = 53/158 (33%), Positives = 73/158 (46%), Gaps = 6/158 (3%)
 Frame = -1

Query: 1645 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXLFE-W*NLYSCH 1469
            G  +I IR +DG    L EVR+   + KNLI L               +   W       
Sbjct: 319  GTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLIL 378

Query: 1468 ERRQRTKLVLSQRNTMTN--HVMASV--DSDTIKLGHRSLRHTDEKSLQVLAKQGLLNDA 1301
            +   R  L   Q +T+T   HV +S     D  KL H  L H  E+ +Q+L+K+ LL   
Sbjct: 379  KGVMRGTLYFLQGSTVTGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGH 438

Query: 1300 KTCKVVFREYCILCKKKRVKFDTAIHRTE-DLDFVHID 1190
            K   + F E+C+  K  R KF  AIHRT+  LD++H D
Sbjct: 439  KVKSLEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHSD 476



 Score = 53.5 bits (127), Expect(5) = 2e-44
 Identities = 21/47 (44%), Positives = 34/47 (72%)
 Frame = -3

Query: 1784 YSDVSEWMLHSSVTYHIYPKREWFSSFEKLDNGVVFMGDCHACRIVG 1644
            +SDV  W+L S  +YHI P+REWF+++E++D G + M +   C++VG
Sbjct: 275  HSDV--WVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVG 319



 Score = 48.5 bits (114), Expect(5) = 2e-44
 Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 8/167 (4%)
 Frame = -2

Query: 1185 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIK---V 1021
            G  +  SL G   FV  +DDY+R   +Y    K   +  F + K  +E QTG+KIK    
Sbjct: 479  GPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRT 538

Query: 1020 SSVIMVESTRVALFYSYVGI*---SIKILYCQGNTATKWDCRKSELYIAGEGMMLSNLGL 850
             + +    +    F    GI    +++    Q   A     R ++  +     MLSN GL
Sbjct: 539  DNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAE----RMNQTLLERARCMLSNAGL 594

Query: 849  KNNF*VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 709
               F  E ++ A +L NR   + I  KT +E+WSG+AA   +L   G
Sbjct: 595  DRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFG 641



 Score = 25.0 bits (53), Expect(5) = 2e-44
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 149 VHYKARLTAKGYAQKEDV 96
           V YKAR+ A+G+ Q+E V
Sbjct: 853 VKYKARVVARGFNQREGV 870



 Score = 54.7 bits (130), Expect(3) = 6e-10
 Identities = 32/73 (43%), Positives = 42/73 (57%)
 Frame = -3

Query: 2288 GTSIANHMNVYIKLLAVLANVDEVIADEVKALILLSSLPDEYETFVMTLINDKSSLSYND 2109
            GT +  H+     LL  L N+D  I DE  ALILL SLP  +E FV + I  K ++S  +
Sbjct: 112  GTQLREHLEQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEE 171

Query: 2108 VFAALVNYELRRK 2070
            V +AL + ELR K
Sbjct: 172  VRSALHSRELRHK 184



 Score = 35.8 bits (81), Expect(3) = 6e-10
 Identities = 20/55 (36%), Positives = 31/55 (56%)
 Frame = -1

Query: 2437 VCLTQDLKYHVMYEISARKILEILKSYYLTKSIGNRLHLNGRFYRFQLKGGPQLR 2273
            +CL  D+   V  E +A  +   L+S Y+TKS+ N+L L  R +  ++  G QLR
Sbjct: 62   LCLADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLR 116



 Score = 24.3 bits (51), Expect(3) = 6e-10
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 2628 LNAHQFKIDMVKFDGTNNFGMWRCEVLDVLNCQ 2530
            ++A   KID  KF G N+F +W+ ++  +L  Q
Sbjct: 1    MSALNVKID--KFTGRNSFSLWQIKMRALLKQQ 31


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score = 73.6 bits (179), Expect(4) = 9e-40
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 25/210 (11%)
 Frame = -1

Query: 718  IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQ--IS*QV---ETDVSPQ 554
            +FGC+AY  V NGKL+PR  K IF+ +  GV   ++    T++  IS  V   E+ +   
Sbjct: 570  VFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETKKVVISRNVVFHESIMLHD 629

Query: 553  TSVTTVSFDTPLEVTQQA--------------TQVTDMTDTLGGEDSEYQEGQVQDSIAV 416
               T V  ++  +V+ Q                 +      +   DS   +   + SIA 
Sbjct: 630  KPSTNVPVESQEKVSVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVQQSPKRSIAK 689

Query: 415  RKSKRNTK-MSGWLSKDMMVAYTLSVV*K----SVPSTLRKVEVSVKSDKWKYVVMEEMD 251
             + KRNTK    ++ +  +VAY LSV  +    + PST     VS   ++W   + +EM+
Sbjct: 690  DRPKRNTKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEME 749

Query: 250  SLLKN-TWILPKLSKGNKVIGCK*VFAMKD 164
            SL KN +W L KL K  K I CK +F  K+
Sbjct: 750  SLEKNHSWELEKLPKEKKPIRCKWIFKRKE 779



 Score = 72.4 bits (176), Expect(4) = 9e-40
 Identities = 57/172 (33%), Positives = 79/172 (45%), Gaps = 19/172 (11%)
 Frame = -1

Query: 1645 GICTINIRMYDGMARKLIEVRYALALKKNLILL--------------GAFVXXXXXXXXX 1508
            GI T+ I+M+DG  R L++VR+   LK++LI L              G            
Sbjct: 249  GIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVM 308

Query: 1507 XXLFEW*NLYSCHERRQRTKLVLSQRNTMTNHVMASVDS----DTIKLGHRSLRHTDEKS 1340
                ++ NLY              +  T+  +V A  DS    D   L H  L H  E  
Sbjct: 309  KADIKYANLYHL------------RGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIG 356

Query: 1339 LQVLAKQGLLNDAKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1187
            L  L+K+GLL+     K+ F E+CI  K KRVKF+T+ H TE  LD+VH D+
Sbjct: 357  LAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 408



 Score = 64.7 bits (156), Expect(4) = 9e-40
 Identities = 55/163 (33%), Positives = 74/163 (45%), Gaps = 4/163 (2%)
 Frame = -2

Query: 1185 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1012
            G A+ TS  G    +  VDDY+R++  Y    K   +  F + K  +E QT RK+K+   
Sbjct: 410  GPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 469

Query: 1011 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDC--RKSELYIAGEGMMLSNLGLKNNF 838
                     +F SY     I   Y   +T  +     R +   I+    MLSN  L   F
Sbjct: 470  DNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQF 529

Query: 837  *VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 709
              E ++ A +L NR  S AID+KT IEVWSG  A   DL   G
Sbjct: 530  WAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFG 572



 Score = 25.8 bits (55), Expect(4) = 9e-40
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 152 DVHYKARLTAKGYAQ 108
           +  YKARL AKGY+Q
Sbjct: 786 EARYKARLVAKGYSQ 800


>gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]
          Length = 876

 Score = 72.4 bits (176), Expect(5) = 1e-39
 Identities = 62/175 (35%), Positives = 78/175 (44%), Gaps = 22/175 (12%)
 Frame = -1

Query: 1645 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXLFEW*NLYSCHE 1466
            GI  I I M DG  R L  VRY   L+KNLI LG                   N YS   
Sbjct: 249  GIGQIKIAMDDGGVRTLTNVRYIPELRKNLISLGTLQE---------------NGYSYRS 293

Query: 1465 RRQRTKLVLSQR-------------------NTMTNHVMASV--DSDTIKLGHRSLRHTD 1349
             R R  L +S+                    NT+   V ASV  D+D  KL H  L H  
Sbjct: 294  DRDRDILKVSKGALTVMRVKRTAGNIYKLLGNTVVGDV-ASVESDNDATKLWHLRLGHLS 352

Query: 1348 EKSLQVLAKQGLLNDAKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1187
            E+ +  L K+ LL    +CK+   +YC+L K+ RV+F    H+TE  LD+VH DV
Sbjct: 353  ERGMMELHKRSLLKGVCSCKMDLCKYCVLGKQCRVRFKPMKHKTEGILDYVHSDV 407



 Score = 66.6 bits (161), Expect(5) = 1e-39
 Identities = 60/215 (27%), Positives = 96/215 (44%), Gaps = 31/215 (14%)
 Frame = -1

Query: 718  IFGCSAYYPVKN---GKLDPRARKVIFISFKCGVGSQQVENTTTRQI--------S*QVE 572
            IFGC  +  + +    KLDP+++K IF+ +  GV   ++ +  ++++          Q  
Sbjct: 569  IFGCPTFVHISSEDRSKLDPKSKKCIFVGYSKGVKGFKLWDPVSKKMVLSRDVVFDEQFM 628

Query: 571  TDVSPQTSVT-TVSFDTPLEVTQQATQVTDMTDTLG-----------GEDSEYQEGQVQD 428
               S +T VT +    +  EV Q   + T   +T               D+    G  +D
Sbjct: 629  LKQSRETEVTESAGGSSGKEVIQVELEPTPNKNTSAVHQQPPEPTPINHDTADSGGASED 688

Query: 427  SIAV-------RKSKRNTKMSGWLSKDMMVAYTLSVV*KSVPSTLRKVEVSVKSDKWKYV 269
            S+ V        + +R+         + + AY L +     PST R+  VS + DKW   
Sbjct: 689  SVGVDDYQLARDRERRSINPPQRYGFEDLAAYAL-LTSSGDPSTFREAIVSQEKDKWMGA 747

Query: 268  VMEEMDSLLKN-TWILPKLSKGNKVIGCK*VFAMK 167
            +MEEM+SL KN TW L +L  G + IGCK V+  K
Sbjct: 748  MMEEMESLQKNQTWELVQLPMGKRTIGCKWVYKRK 782



 Score = 47.8 bits (112), Expect(5) = 1e-39
 Identities = 19/41 (46%), Positives = 26/41 (63%)
 Frame = -3

Query: 1766 WMLHSSVTYHIYPKREWFSSFEKLDNGVVFMGDCHACRIVG 1644
            W+L S  +YH+ P REWF++F     G V++GD  AC I G
Sbjct: 209  WILDSGCSYHMTPNREWFTTFRSGSFGFVYLGDDKACAITG 249



 Score = 44.3 bits (103), Expect(5) = 1e-39
 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
 Frame = -2

Query: 1185 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKV--- 1021
            G  +  S+ G   FV + DD++R+L +Y    K   +  F   K  +E QTGRKIK    
Sbjct: 409  GPTREASMGGSRYFVTFTDDFSRKLWVYFMKQKSEVFSKFKLWKAEVENQTGRKIKYLRS 468

Query: 1020 SSVIMVESTRVALFYSYVGI---*SIKILYCQGNTATKWDCRKSELYIAGEGMMLSNLGL 850
             +     +++   F    GI    S++    Q   A + +   +E        +    GL
Sbjct: 469  DNGTEYTNSQFEKFCEQHGIQRHFSVRKTPQQNGVAERMNMSLTE----RARCLQLKAGL 524

Query: 849  KNNF*VETLTYANHLTNRLSSSAIDRKTLIEVWSGR 742
               F  ET+  A +L NR   ++++ K   EVW+G+
Sbjct: 525  SKGFWAETINMACYLINRSPRASLEGKVAEEVWTGK 560



 Score = 25.0 bits (53), Expect(5) = 1e-39
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -3

Query: 143 YKARLTAKGYAQKEDV 96
           +KARL AKGY+Q++ +
Sbjct: 793 FKARLVAKGYSQQKGI 808


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2340

 Score = 75.5 bits (184), Expect(4) = 1e-39
 Identities = 68/212 (32%), Positives = 105/212 (49%), Gaps = 27/212 (12%)
 Frame = -1

Query: 718  IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQIS*QVETDVSPQTSV-- 545
            +FGC+AY  V NGKL+PRA K IF+ +  GV   ++    T+++   +  +V    SV  
Sbjct: 868  VFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKV--VISRNVVFHESVML 925

Query: 544  -TTVSFDTPLEVTQQAT-QVTDMTDTLGGEDSE-----YQEGQVQD------------SI 422
                S + P+E  ++A+ QV  +  +    + E       E  ++D            SI
Sbjct: 926  HDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDEPVIEDSNSSIVQQSPKRSI 985

Query: 421  AVRKSKRNTK-MSGWLSKDMMVAYTLSVV*K----SVPSTLRKVEVSVKSDKWKYVVMEE 257
            A  + KRN K    ++ +  +VAY LSV  +    + PST  +  VS   ++W   + +E
Sbjct: 986  AKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDE 1045

Query: 256  MDSLLKN-TWILPKLSKGNKVIGCK*VFAMKD 164
            M+SL KN TW L KL K  K I CK +F  K+
Sbjct: 1046 MESLEKNHTWELVKLPKEKKPIRCKWIFKRKE 1077



 Score = 69.7 bits (169), Expect(4) = 1e-39
 Identities = 55/160 (34%), Positives = 78/160 (48%), Gaps = 7/160 (4%)
 Frame = -1

Query: 1645 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXLFEW*--NLYSC 1472
            GI T+ I+M+DG  R L +VR+   LK++LI L               + +    +L   
Sbjct: 547  GIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVM 606

Query: 1471 HERRQRTKLVLSQRNTMTNHVMASVDS----DTIKLGHRSLRHTDEKSLQVLAKQGLLND 1304
                +   L   +  T+  +V A  DS    D   L H  L H  E  L  L+K+GLL+ 
Sbjct: 607  KADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDG 666

Query: 1303 AKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1187
                K+ F E+CI  K KRVKF+T+ H TE  LD+VH D+
Sbjct: 667  QSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 706



 Score = 65.5 bits (158), Expect(4) = 1e-39
 Identities = 55/163 (33%), Positives = 75/163 (46%), Gaps = 4/163 (2%)
 Frame = -2

Query: 1185 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1012
            G A+ TS  G    +  VDDY+R++  Y    K   +  F + K  +E QT RK+K+   
Sbjct: 708  GPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 767

Query: 1011 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDC--RKSELYIAGEGMMLSNLGLKNNF 838
                     +F SY     I   Y   +T  +     R +   I+    +LSN GL   F
Sbjct: 768  DNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQF 827

Query: 837  *VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 709
              E ++ A +L NR  S AID+KT IEVWSG  A   DL   G
Sbjct: 828  WAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFG 870



 Score = 25.4 bits (54), Expect(4) = 1e-39
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 152  DVHYKARLTAKGYAQ 108
            +  YKARL AKGY+Q
Sbjct: 1084 EARYKARLIAKGYSQ 1098


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score = 76.3 bits (186), Expect(4) = 1e-36
 Identities = 65/212 (30%), Positives = 100/212 (47%), Gaps = 27/212 (12%)
 Frame = -1

Query: 718  IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQIS*QVETDVSPQTSV-- 545
            +FGC+AY  V NGKL+PRA K IF+ +  GV   ++    T+++   +  +V    SV  
Sbjct: 696  VFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKV--VISRNVVFHESVIL 753

Query: 544  -TTVSFDTPLEVTQQAT------------------QVTDMTDTLGGEDSEYQEGQVQDSI 422
                S + P+E  ++A+                   +      +   DS   +   + SI
Sbjct: 754  HDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSI 813

Query: 421  AVRKSKRNTK-MSGWLSKDMMVAYTLSVV*K----SVPSTLRKVEVSVKSDKWKYVVMEE 257
            A  K KRN K    ++ +  +VAY LSV  +    + PST  +  VS   ++W   + +E
Sbjct: 814  AKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDE 873

Query: 256  MDSLLKN-TWILPKLSKGNKVIGCK*VFAMKD 164
            M+SL KN TW   KL K  K I CK +F  K+
Sbjct: 874  MESLKKNHTWEFVKLPKEKKPIRCKWIFKRKE 905



 Score = 67.0 bits (162), Expect(4) = 1e-36
 Identities = 54/160 (33%), Positives = 77/160 (48%), Gaps = 7/160 (4%)
 Frame = -1

Query: 1645 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXLFEW*--NLYSC 1472
            GI T+ I+M+DG  R L +VR+   LK++LI L               + +    +L   
Sbjct: 375  GIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVM 434

Query: 1471 HERRQRTKLVLSQRNTMTNHVMASVDS----DTIKLGHRSLRHTDEKSLQVLAKQGLLND 1304
                +   L   +  T+  +V A  DS    D   L H  L H  E  L  L+K+ LL+ 
Sbjct: 435  KADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDG 494

Query: 1303 AKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1187
                K+ F E+CI  K KRVKF+T+ H TE  LD+VH D+
Sbjct: 495  QSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 534



 Score = 56.6 bits (135), Expect(4) = 1e-36
 Identities = 52/163 (31%), Positives = 71/163 (43%), Gaps = 4/163 (2%)
 Frame = -2

Query: 1185 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1012
            G A  TS  G    +  VDDY+R++  Y    K   +  F + K  +E QT +K+K+   
Sbjct: 536  GPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRT 595

Query: 1011 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDC--RKSELYIAGEGMMLSNLGLKNNF 838
                     +F SY     I   Y   +T  +     R +   I+    MLSN  L   F
Sbjct: 596  DNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNADLPKQF 655

Query: 837  *VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 709
              E ++   +L NR  S A D+KT IEVWSG  A   DL   G
Sbjct: 656  WAEAVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFG 698



 Score = 25.8 bits (55), Expect(4) = 1e-36
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 152 DVHYKARLTAKGYAQ 108
           +  YKARL AKGY+Q
Sbjct: 912 EARYKARLVAKGYSQ 926


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score = 76.3 bits (186), Expect(4) = 1e-36
 Identities = 65/212 (30%), Positives = 100/212 (47%), Gaps = 27/212 (12%)
 Frame = -1

Query: 718  IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQIS*QVETDVSPQTSV-- 545
            +FGC+AY  V NGKL+PRA K IF+ +  GV   ++    T+++   +  +V    SV  
Sbjct: 696  VFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKV--VISRNVVFHESVIL 753

Query: 544  -TTVSFDTPLEVTQQAT------------------QVTDMTDTLGGEDSEYQEGQVQDSI 422
                S + P+E  ++A+                   +      +   DS   +   + SI
Sbjct: 754  HDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSI 813

Query: 421  AVRKSKRNTK-MSGWLSKDMMVAYTLSVV*K----SVPSTLRKVEVSVKSDKWKYVVMEE 257
            A  K KRN K    ++ +  +VAY LSV  +    + PST  +  VS   ++W   + +E
Sbjct: 814  AKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDE 873

Query: 256  MDSLLKN-TWILPKLSKGNKVIGCK*VFAMKD 164
            M+SL KN TW   KL K  K I CK +F  K+
Sbjct: 874  MESLKKNHTWEFVKLPKEKKPIRCKWIFKRKE 905



 Score = 67.0 bits (162), Expect(4) = 1e-36
 Identities = 54/160 (33%), Positives = 77/160 (48%), Gaps = 7/160 (4%)
 Frame = -1

Query: 1645 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXLFEW*--NLYSC 1472
            GI T+ I+M+DG  R L +VR+   LK++LI L               + +    +L   
Sbjct: 375  GIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVM 434

Query: 1471 HERRQRTKLVLSQRNTMTNHVMASVDS----DTIKLGHRSLRHTDEKSLQVLAKQGLLND 1304
                +   L   +  T+  +V A  DS    D   L H  L H  E  L  L+K+ LL+ 
Sbjct: 435  KADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDG 494

Query: 1303 AKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1187
                K+ F E+CI  K KRVKF+T+ H TE  LD+VH D+
Sbjct: 495  QSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 534



 Score = 56.6 bits (135), Expect(4) = 1e-36
 Identities = 52/163 (31%), Positives = 71/163 (43%), Gaps = 4/163 (2%)
 Frame = -2

Query: 1185 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1012
            G A  TS  G    +  VDDY+R++  Y    K   +  F + K  +E QT +K+K+   
Sbjct: 536  GPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRT 595

Query: 1011 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDC--RKSELYIAGEGMMLSNLGLKNNF 838
                     +F SY     I   Y   +T  +     R +   I+    MLSN  L   F
Sbjct: 596  DNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNADLPKQF 655

Query: 837  *VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 709
              E ++   +L NR  S A D+KT IEVWSG  A   DL   G
Sbjct: 656  WAEAVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFG 698



 Score = 25.8 bits (55), Expect(4) = 1e-36
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 152 DVHYKARLTAKGYAQ 108
           +  YKARL AKGY+Q
Sbjct: 912 EARYKARLVAKGYSQ 926


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score = 79.3 bits (194), Expect(3) = 2e-36
 Identities = 66/194 (34%), Positives = 97/194 (50%), Gaps = 9/194 (4%)
 Frame = -1

Query: 718  IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQIS*QVETDVSPQTSVTT 539
            +FGC+AY  V NGKL+PRA K IF+ +  GV   ++                 P+T    
Sbjct: 489  VFGCTAYAHVDNGKLEPRAIKCIFLGYSSGVKGYKL---------------WCPETKKVV 533

Query: 538  VSFDTPLEVTQQATQVTDMTDTLGGEDSEYQEGQVQ---DSIAVRKSKRNTK-MSGWLSK 371
            +S +    V  ++  + D   T    +S+ ++  VQ    SIA  K KRNTK    ++ +
Sbjct: 534  ISRNV---VFHESVMLHDKPSTNVPVESQ-EKASVQFPKRSIAKDKPKRNTKPPQRYIEE 589

Query: 370  DMMVAYTLSVV*K----SVPSTLRKVEVSVKSDKWKYVVMEEMDSLLKN-TWILPKLSKG 206
              +VAY LSV  +    + PST  +  VS   ++W   + +EM+SL KN TW L KL K 
Sbjct: 590  ANIVAYALSVTEEIEGNAEPSTYSEAIVSDDCNRWITTMHDEMESLEKNHTWELVKLPKE 649

Query: 205  NKVIGCK*VFAMKD 164
             K I CK +F  K+
Sbjct: 650  KKPIRCKWIFKRKE 663



 Score = 65.5 bits (158), Expect(3) = 2e-36
 Identities = 53/160 (33%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
 Frame = -1

Query: 1645 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXLFEW*--NLYSC 1472
            GI  + I+M+DG    L +VR+   LK++LI L               + +    +L   
Sbjct: 172  GIGIVQIKMFDGCISTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVM 231

Query: 1471 HERRQRTKLVLSQRNTMTNHVMASVDS----DTIKLGHRSLRHTDEKSLQVLAKQGLLND 1304
                +   L   +  T+  +V A  DS    D   L H  L H  E  L  L+K+GLL+ 
Sbjct: 232  KADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDG 291

Query: 1303 AKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1187
                K+ F E+CI  K KRVKF+T+ H TE  LD+VH D+
Sbjct: 292  QSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 331



 Score = 60.5 bits (145), Expect(3) = 2e-36
 Identities = 54/162 (33%), Positives = 73/162 (45%), Gaps = 3/162 (1%)
 Frame = -2

Query: 1185 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1012
            G A+ TS  G    +  VDDY+R++  Y    K   +  F + K  +E QT RK+K+   
Sbjct: 333  GPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 392

Query: 1011 IMVESTRVALFYSYVGI*SIKILYC-QGNTATKWDCRKSELYIAGEGMMLSNLGLKNNF* 835
                     +F SY     I   Y  Q N   +   R +   I+    MLSN GL   F 
Sbjct: 393  DNGMEFCSKIFKSYCKSEGIVRHYTPQQNGVAE---RMNRTIISKARCMLSNAGLPKQFW 449

Query: 834  VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 709
               ++   +L NR  S AID+KT I+VWSG  A   DL   G
Sbjct: 450  AAAVSTTCYLINRSPSYAIDKKTPIKVWSGFPANYSDLRVFG 491


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score = 73.9 bits (180), Expect(4) = 6e-36
 Identities = 65/206 (31%), Positives = 94/206 (45%), Gaps = 22/206 (10%)
 Frame = -1

Query: 718  IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQ----IS*QV---ETDVS 560
            +FGC+AY   K  KL+PRA K IF+ +  GV   ++   T  +    IS  V   E D+S
Sbjct: 619  VFGCTAYVHTKTDKLEPRAVKCIFLGYPKGVKGYKLWIETQGKGKCIISRDVTFNEQDMS 678

Query: 559  PQTSVTTV------SFDTPLEVTQ-----QATQVTDMTDTLGGEDSEYQEGQVQDSIAVR 413
             QT    V       F+   E  Q     + +  T   + +    +E  +G    ++   
Sbjct: 679  KQTPAKDVEGLDQLQFEVEHETLQPEKSKETSSKTAQEEIVHERQNEPTQGLESYNLVRD 738

Query: 412  KSKRNTKMSGWLSKDMMVAYTLSVV*KSV---PSTLRKVEVSVKSDKWKYVVMEEMDSLL 242
            + KR  K      +  M A+ LSV  + V   P T ++   S ++D+W   + EEMDSL 
Sbjct: 739  RQKRQVKPPKRYGQAEMTAFALSVAEEIVDMEPKTYQEAINSNEADQWVKAIQEEMDSLR 798

Query: 241  KN-TWILPKLSKGNKVIGCK*VFAMK 167
            KN TW L    K  KV+G K VF  K
Sbjct: 799  KNETWELVTKPKDRKVVGSKWVFKRK 824



 Score = 73.2 bits (178), Expect(4) = 6e-36
 Identities = 53/157 (33%), Positives = 75/157 (47%), Gaps = 4/157 (2%)
 Frame = -1

Query: 1645 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXLFEW*N-LYSCH 1469
            G  T+ I+ YDG+ R L +VRY   LK+NLI LG                       +  
Sbjct: 301  GTGTVRIKHYDGIERVLEDVRYIPELKRNLISLGMLDKSGYTFKSEPNSLRVARGSLTVM 360

Query: 1468 ERRQRTKLVLSQRNTMTNHVMASVDSD--TIKLGHRSLRHTDEKSLQVLAKQGLLNDAKT 1295
            +   +  L      T+T  V   +  D  T KL H+ L H   + LQ L KQG+L + K 
Sbjct: 361  KGTIKNGLYTLIGQTVTGKVSTVLKEDVGTTKLWHQRLGHISHRGLQELEKQGVLGNYKL 420

Query: 1294 CKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1187
              + F E+C+  K  RVKF  AIH T++ LD++H D+
Sbjct: 421  TDLPFCEHCVFGKATRVKFAKAIHETQNQLDYIHSDL 457



 Score = 47.8 bits (112), Expect(4) = 6e-36
 Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 8/167 (4%)
 Frame = -2

Query: 1185 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIK---V 1021
            G ++  S+ G   F+  +DDY+R++ IY    K   +  F + K  +E QT RK+K    
Sbjct: 459  GPSRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSETFLKFKEWKILVETQTSRKVKKLRT 518

Query: 1020 SSVIMVESTRVALFYSYVGI*---SIKILYCQGNTATKWDCRKSELYIAGEGMMLSNLGL 850
             + +   S          GI    +++    Q   A     R +   +     MLS+ GL
Sbjct: 519  DNGLEFLSNDFNSLCQKEGIARHRTVRYTPQQNGLAE----RMNRTILERVRCMLSSSGL 574

Query: 849  KNNF*VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 709
               F  E    A HL NR  SSA+  KT  E W+G+AA    L   G
Sbjct: 575  SKVFWAEAAETAVHLINRSPSSALQFKTPQEKWTGKAADYQHLKVFG 621



 Score = 28.5 bits (62), Expect(4) = 6e-36
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -3

Query: 143 YKARLTAKGYAQKEDV 96
           YKARL AKG++QKE V
Sbjct: 835 YKARLVAKGFSQKEGV 850



 Score = 48.9 bits (115), Expect(2) = 6e-06
 Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
 Frame = -3

Query: 2303 FSVEGGTSIANHMNVYIKLLAVLANVDEVIADEVKALILLSSLPDEYETFVMTLINDKSS 2124
            F +  G SI  H++ + K++  L N+D  I+DE KA++LL+SL   Y      ++  + S
Sbjct: 110  FKMTPGMSIEXHLDHFNKIILDLENIDITISDEDKAILLLTSLDASYTNMKDAIMYGRDS 169

Query: 2123 LSYNDVFAALVNYEL-RRKDWKSSSGK 2046
            L++++V + L   EL ++++ K  SG+
Sbjct: 170  LTFDEVQSILHARELQKQEESKEESGE 196



 Score = 32.7 bits (73), Expect(2) = 6e-06
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 2392 SARKILEILKSYYLTKSIGNRLHLNGRFYRFQLKGG 2285
            SA ++   L+S Y+TKS+ NRLH   + Y F++  G
Sbjct: 80   SAAEVWLKLESLYMTKSLANRLHKKIKLYTFKMTPG 115


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa]
          Length = 944

 Score = 77.0 bits (188), Expect(3) = 8e-36
 Identities = 65/194 (33%), Positives = 96/194 (49%), Gaps = 9/194 (4%)
 Frame = -1

Query: 718  IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQIS*QVETDVSPQTSVTT 539
            +FGC+AY  V NGKL+PRA K IF+ +  GV   ++                 P+T    
Sbjct: 489  VFGCTAYAHVDNGKLEPRAIKCIFLGYSSGVKGYKL---------------WCPETKKVV 533

Query: 538  VSFDTPLEVTQQATQVTDMTDTLGGEDSEYQEGQVQ---DSIAVRKSKRNTK-MSGWLSK 371
            +S +    V  ++  + D   T    +S+ ++  VQ    SIA  K KRNTK    ++ +
Sbjct: 534  ISRNV---VFHESVMLHDKPSTNVPVESQ-EKASVQFPKRSIAKDKPKRNTKPPQRYIEE 589

Query: 370  DMMVAYTLSVV*K----SVPSTLRKVEVSVKSDKWKYVVMEEMDSLLKN-TWILPKLSKG 206
              +VAY LSV  +    + PS   +  VS   ++W   + +EM+SL KN TW L KL K 
Sbjct: 590  ANIVAYALSVTEEIEGNAEPSIYSEAIVSDDCNRWITTMHDEMESLEKNHTWELVKLPKE 649

Query: 205  NKVIGCK*VFAMKD 164
             K I CK +F  K+
Sbjct: 650  KKPIRCKWIFKRKE 663



 Score = 65.5 bits (158), Expect(3) = 8e-36
 Identities = 53/160 (33%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
 Frame = -1

Query: 1645 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXLFEW*--NLYSC 1472
            GI  + I+M+DG    L +VR+   LK++LI L               + +    +L   
Sbjct: 172  GIGIVQIKMFDGCISTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVM 231

Query: 1471 HERRQRTKLVLSQRNTMTNHVMASVDS----DTIKLGHRSLRHTDEKSLQVLAKQGLLND 1304
                +   L   +  T+  +V A  DS    D   L H  L H  E  L  L+K+GLL+ 
Sbjct: 232  KADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDG 291

Query: 1303 AKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1187
                K+ F E+CI  K KRVKF+T+ H TE  LD+VH D+
Sbjct: 292  QSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 331



 Score = 60.5 bits (145), Expect(3) = 8e-36
 Identities = 54/162 (33%), Positives = 73/162 (45%), Gaps = 3/162 (1%)
 Frame = -2

Query: 1185 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1012
            G A+ TS  G    +  VDDY+R++  Y    K   +  F + K  +E QT RK+K+   
Sbjct: 333  GPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 392

Query: 1011 IMVESTRVALFYSYVGI*SIKILYC-QGNTATKWDCRKSELYIAGEGMMLSNLGLKNNF* 835
                     +F SY     I   Y  Q N   +   R +   I+    MLSN GL   F 
Sbjct: 393  DNGMEFCSKIFKSYCKSEGIVRHYTPQQNGVAE---RMNRTIISKARCMLSNAGLPKQFW 449

Query: 834  VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 709
               ++   +L NR  S AID+KT I+VWSG  A   DL   G
Sbjct: 450  AAAVSTTCYLINRSPSYAIDKKTPIKVWSGFPANYSDLRVFG 491


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|AAT44170.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1175

 Score = 65.9 bits (159), Expect(4) = 4e-35
 Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 22/197 (11%)
 Frame = -1

Query: 718  IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQ--------IS*QVETDV 563
            +FGC+AY  V NGKL+PRA K +F+ +  GV   ++ N  T +         +  V  + 
Sbjct: 549  VFGCTAYAHVNNGKLEPRAIKCLFLGYGSGVKGYKLWNPETNKTFMSRSVVFNESVMFND 608

Query: 562  SPQTSVTTVSFDTPLE-VTQQATQVTDM-TDTLGGEDSEYQEG-----QVQDS-IAVRKS 407
            S  T V    FD   + V+ Q   V D  T+ +G + ++  +      Q QD  IA R++
Sbjct: 609  SLPTDVIPGGFDEEQQYVSVQVEHVDDQKTEIVGNDVNDTVQHSPPVLQPQDEPIAHRRT 668

Query: 406  KRNTKMSGWLSKDMMVAYTLSVV*KSVPSTLR-----KVEVSVKSDKWKYVVMEEMDSLL 242
            KR+      L ++  + Y   +  + V +TL      +V VS   +KW   + EEM SL 
Sbjct: 669  KRSCGAPVRLIEECDMVYYAFICAEQVENTLELATYTEVVVSGDREKWISAMQEEMQSLE 728

Query: 241  KN-TWILPKLSKGNKVI 194
            KN TW L  L K  K +
Sbjct: 729  KNDTWELVHLPKQKKPV 745



 Score = 63.9 bits (154), Expect(4) = 4e-35
 Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 8/161 (4%)
 Frame = -1

Query: 1645 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXLFEW*N---LYS 1475
            GI ++ I+ +DGM R L +VR+   + +NLI L               + +      +Y 
Sbjct: 228  GIGSVQIKTHDGMTRTLKDVRHIPRMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYM 287

Query: 1474 CHERRQRTKLVLSQRNTMTNHVMASVDS----DTIKLGHRSLRHTDEKSLQVLAKQGLLN 1307
              +       VL + +T+  +V A+V S        + H  L H  E  +  L K+ LL+
Sbjct: 288  IGDMNSANLYVL-RGSTLHGYVTAAVVSKDEPSKTNMWHMRLGHMSELGMAELMKRNLLD 346

Query: 1306 DAKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1187
                  + F E+C+  K KRVKF+T++HRT+  LD+VH D+
Sbjct: 347  GCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADL 387



 Score = 47.4 bits (111), Expect(4) = 4e-35
 Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
 Frame = -3

Query: 1790 ICYSDVSEWMLHSSVTYHIYPKREWFSSFEKLDNG-VVFMGDCHACRIVG 1644
            +C S   EW+L ++ ++HI   R+WFSS++ + NG VV MGD +   IVG
Sbjct: 179  VCVSSHDEWILDTTCSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVG 228



 Score = 43.5 bits (101), Expect(4) = 4e-35
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 4/163 (2%)
 Frame = -2

Query: 1185 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1012
            G ++  SL G    +  +DDY+R++  Y    K   +  F + K  I+ QT +++KV   
Sbjct: 389  GPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIKRQTEKEVKVLRT 448

Query: 1011 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDC--RKSELYIAGEGMMLSNLGLKNNF 838
                      F  Y     I + +    T  +     R +   I+    MLSN  +   F
Sbjct: 449  DNGGGFCSDAFDDYCRKEGIVMHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRF 508

Query: 837  *VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 709
              E    A +L NR  S ++++KT IEVWSG  A    L   G
Sbjct: 509  WAEAAKTACYLINRSPSISLNKKTPIEVWSGMPANYSQLRVFG 551


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
 gb|AAM10749.1|AC112514_2 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score = 72.4 bits (176), Expect(3) = 4e-34
 Identities = 67/212 (31%), Positives = 100/212 (47%), Gaps = 27/212 (12%)
 Frame = -1

Query: 718  IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQIS*QVETDVSPQTSV-- 545
            +FGC AY  V N KL+PRA K IF+ +  GV   ++    T+++   +  +V    SV  
Sbjct: 622  VFGCIAYAHVDNSKLEPRAIKCIFLGYPSGVKGYKLWCPETKKV--VISRNVVFHESVML 679

Query: 544  -TTVSFDTPLEVTQQAT-QVTDMTDT-----------------LGGEDSEYQEGQVQDSI 422
                S + P+E  ++A+ QV  +  +                 +   DS   +   + SI
Sbjct: 680  HDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINLDAPVIEDSDSSIVQQSPKHSI 739

Query: 421  AVRKSKRNTK-MSGWLSKDMMVAYTLSVV*K----SVPSTLRKVEVSVKSDKWKYVVMEE 257
            A  K KRN K    ++ +  +VAY LSV  +      PST     VS   ++W   + +E
Sbjct: 740  AKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTYSDAIVSDDCNRWITAMHDE 799

Query: 256  MDSLLKN-TWILPKLSKGNKVIGCK*VFAMKD 164
            M+SL KN TW L KL K  K I CK +F  K+
Sbjct: 800  MESLEKNHTWELVKLPKEKKPIRCKWIFKRKE 831



 Score = 65.1 bits (157), Expect(3) = 4e-34
 Identities = 55/163 (33%), Positives = 75/163 (46%), Gaps = 4/163 (2%)
 Frame = -2

Query: 1185 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1012
            G A+ TS  G    +  VDDY+R++  Y    K   +  F + K  +E QT RK+K+   
Sbjct: 462  GPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 521

Query: 1011 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDC--RKSELYIAGEGMMLSNLGLKNNF 838
                     +F SY     I   Y   +T  +     R +   I+    MLSN GL   F
Sbjct: 522  DNGMDFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQF 581

Query: 837  *VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 709
              E ++ A +L NR  S AID+KT I+VWSG  A   DL   G
Sbjct: 582  WAEAVSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFG 624



 Score = 59.7 bits (143), Expect(3) = 4e-34
 Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
 Frame = -1

Query: 1396 DSDTIKLGHRSLRHTDEKSLQVLAKQGLLNDAKTCKVVFREYCILCKKKRVKFDTAIHRT 1217
            +SD   L H  L H  E  L  L+K+GLL+     K+ F E+CI  K KRVKF+T+ H T
Sbjct: 390  NSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTT 449

Query: 1216 ED-LDFVHIDV 1187
            E  LD+VH D+
Sbjct: 450  EGILDYVHSDL 460


>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa]
          Length = 1009

 Score = 73.9 bits (180), Expect(3) = 2e-32
 Identities = 64/212 (30%), Positives = 99/212 (46%), Gaps = 27/212 (12%)
 Frame = -1

Query: 718  IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQIS*QVETDVSPQTSV-- 545
            +F C+AY  V NGKL+PRA K IF+ +  GV   ++    T+++   +  +V    SV  
Sbjct: 482  VFSCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKV--VINRNVVFHESVML 539

Query: 544  -TTVSFDTPLEVTQQAT------------------QVTDMTDTLGGEDSEYQEGQVQDSI 422
                S + P+E  ++A+                   +      +   DS   +   + SI
Sbjct: 540  HDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVQQSPKRSI 599

Query: 421  AVRKSKRNTK-MSGWLSKDMMVAYTLSVV*K----SVPSTLRKVEVSVKSDKWKYVVMEE 257
            A  + KRNTK    ++ +  +V Y LSV  +    + PST     VS   ++W   + +E
Sbjct: 600  AKDRPKRNTKPPRKYIEEANIVTYALSVAEEIEGNTEPSTYSDAIVSDDCNRWITAMHDE 659

Query: 256  MDSLLKN-TWILPKLSKGNKVIGCK*VFAMKD 164
            M+SL KN TW L KL K  K I CK +F  K+
Sbjct: 660  MESLEKNHTWELVKLPKEKKPIRCKWIFKRKE 691



 Score = 58.9 bits (141), Expect(3) = 2e-32
 Identities = 52/159 (32%), Positives = 72/159 (45%), Gaps = 4/159 (2%)
 Frame = -2

Query: 1185 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1012
            G    TS  G    +  +DDY+R++  Y    K   +  F + K  +E QT RK+K+   
Sbjct: 322  GPTCKTSFGGARYMMTIIDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRP 381

Query: 1011 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDC--RKSELYIAGEGMMLSNLGLKNNF 838
                     +F SY     I   Y   +T  +     R +   I+    MLSN GL   F
Sbjct: 382  DNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQF 441

Query: 837  *VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDL 721
              E ++ A +L NR  S AID+KT IEVWS   A+  DL
Sbjct: 442  WAEAVSTACYLINRSPSYAIDKKTPIEVWSSSPAKYSDL 480



 Score = 58.5 bits (140), Expect(3) = 2e-32
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
 Frame = -1

Query: 1396 DSDTIKLGHRSLRHTDEKSLQVLAKQGLLNDAKTCKVVFREYCILCKKKRVKFDTAIHRT 1217
            +SD   L H  L H  E  L  L+K+G+L+     K++F E+CI  K  RVKF+T+ H T
Sbjct: 250  NSDATNLWHMRLGHMSEIGLAELSKRGMLDGQSIGKLIFCEHCIFGKHHRVKFNTSTHTT 309

Query: 1216 ED-LDFVHIDV 1187
            E  LD+VH D+
Sbjct: 310  EGILDYVHSDL 320


>emb|CDP17739.1| unnamed protein product [Coffea canephora]
          Length = 435

 Score = 76.6 bits (187), Expect(3) = 8e-32
 Identities = 57/158 (36%), Positives = 77/158 (48%), Gaps = 4/158 (2%)
 Frame = -2

Query: 1185 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRS--RYFHQMKKCIELQTGRKIKVSSV 1012
            G AK  SL G+Y FV ++DD++R + ++    K      F + K  +E QTGRKIK+   
Sbjct: 119  GPAKTPSLGGRYYFVTFIDDFSRRVWVFTMKSKDEVLEIFLKWKARVENQTGRKIKILRT 178

Query: 1011 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDC--RKSELYIAGEGMMLSNLGLKNNF 838
                  +   F        I   +    T  +     R ++  +     MLSN  L   F
Sbjct: 179  DNGGEYKSDPFQKIGQECGIVQHFTVRKTPQQNGVSERMNKTLVEKVHCMLSNARLGRKF 238

Query: 837  *VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYD 724
              ET+TYA HL NRL SSAI  KT +EVWSG+   DYD
Sbjct: 239  WAETVTYAQHLVNRLPSSAIGGKTPLEVWSGKPTTDYD 276



 Score = 75.1 bits (183), Expect(3) = 8e-32
 Identities = 38/71 (53%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
 Frame = -1

Query: 1396 DSDTIKLGHRSLRHTDEKSLQVLAKQGLLNDAKTCKVVFREYCILCKKKRVKFDTAIHRT 1217
            D++  KL H  L H  EKSLQ LAKQGLL   K CK+ F E+C+L K+++VKF T IH T
Sbjct: 47   DAEATKLWHMRLGHAGEKSLQNLAKQGLLKGTKVCKLEFCEHCVLEKQRKVKFGTGIHNT 106

Query: 1216 ED-LDFVHIDV 1187
            +  LD+VH +V
Sbjct: 107  KGILDYVHSNV 117



 Score = 37.7 bits (86), Expect(3) = 8e-32
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = -1

Query: 718 IFGCSAYYPVKNGKLDPRARKVIFISFKCGV 626
           IF  +AYY V   KLDPRA+K IF+    GV
Sbjct: 280 IFYSTAYYHVNESKLDPRAKKAIFMGLNAGV 310


>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1262

 Score = 72.4 bits (176), Expect(3) = 1e-29
 Identities = 67/212 (31%), Positives = 100/212 (47%), Gaps = 27/212 (12%)
 Frame = -1

Query: 718  IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQIS*QVETDVSPQTSV-- 545
            +FGC AY  V N KL+PRA K IF+ +  GV   ++    T+++   +  +V    SV  
Sbjct: 659  VFGCIAYAHVDNSKLEPRAIKCIFLGYPSGVKGYKLWCPETKKV--VISRNVVFHESVML 716

Query: 544  -TTVSFDTPLEVTQQAT-QVTDMTDT-----------------LGGEDSEYQEGQVQDSI 422
                S + P+E  ++A+ QV  +  +                 +   DS   +   + SI
Sbjct: 717  HDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINLDAPVIEDSDSSIVQQSPKHSI 776

Query: 421  AVRKSKRNTK-MSGWLSKDMMVAYTLSVV*K----SVPSTLRKVEVSVKSDKWKYVVMEE 257
            A  K KRN K    ++ +  +VAY LSV  +      PST     VS   ++W   + +E
Sbjct: 777  AKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTYSDAIVSDDCNRWITAMHDE 836

Query: 256  MDSLLKN-TWILPKLSKGNKVIGCK*VFAMKD 164
            M+SL KN TW L KL K  K I CK +F  K+
Sbjct: 837  MESLEKNHTWELVKLPKEKKPIRCKWIFKRKE 868



 Score = 59.7 bits (143), Expect(3) = 1e-29
 Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
 Frame = -1

Query: 1396 DSDTIKLGHRSLRHTDEKSLQVLAKQGLLNDAKTCKVVFREYCILCKKKRVKFDTAIHRT 1217
            +SD   L H  L H  E  L  L+K+GLL+     K+ F E+CI  K KRVKF+T+ H T
Sbjct: 444  NSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTT 503

Query: 1216 ED-LDFVHIDV 1187
            E  LD+VH D+
Sbjct: 504  EGILDYVHSDL 514



 Score = 49.7 bits (117), Expect(3) = 1e-29
 Identities = 48/161 (29%), Positives = 67/161 (41%), Gaps = 2/161 (1%)
 Frame = -2

Query: 1185 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1012
            G A+ TS  G    +  VDDY+R++  Y    K   +  F + K  +E QT RK+K+   
Sbjct: 516  GPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 575

Query: 1011 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDCRKSELYIAGEGMMLSNLGLKNNF*V 832
                     +F SY     I   Y   +T  +    +                L   F  
Sbjct: 576  DNGMDFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAER---------------LPKQFWA 620

Query: 831  ETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 709
            E ++ A +L NR  S AID+KT I+VWSG  A   DL   G
Sbjct: 621  EAVSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFG 661


>gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 448

 Score = 68.9 bits (167), Expect(4) = 2e-29
 Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 6/158 (3%)
 Frame = -1

Query: 1645 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXLFEW*NLYSCHE 1466
            GI TI +RM+DG+ R L EVR+   LKKNLI +G              + E     +   
Sbjct: 93   GIGTIQLRMHDGVIRTLTEVRHVPDLKKNLISVGVLDSKGFKCNVKNGVMEIKRGSTVVM 152

Query: 1465 RR-QRTKLVLSQRNTMTNHVMASVDS----DTIKLGHRSLRHTDEKSLQVLAKQGLLNDA 1301
            R  ++  L + Q +T +     SV      D   L H  L H  E+ + +L++Q LL + 
Sbjct: 153  RGFKKGNLYMLQGSTSSISESVSVAEKNIPDLTYLWHMRLGHMSERGMMILSRQQLLGNH 212

Query: 1300 KTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHID 1190
               ++ F E+C+  K+ R+KF  A H T+  LD++H D
Sbjct: 213  TVKELRFCEHCVFGKQHRIKFPKAQHSTKSTLDYIHSD 250



 Score = 45.4 bits (106), Expect(4) = 2e-29
 Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 4/154 (2%)
 Frame = -2

Query: 1185 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1012
            G ++  SL G   F+  +DDY+R   I+    K   +  F + K  +E Q  +++K    
Sbjct: 253  GPSQVPSLGGGRYFLSIIDDYSRMTWIFITKHKNQAFKCFKEWKILMEKQISKRVKRLRT 312

Query: 1011 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDC--RKSELYIAGEGMMLSNLGLKNNF 838
                      F  +     I   Y   NT  +     R ++  +     +LSN GL  +F
Sbjct: 313  DNGLEFCSKEFNDFCKAEGIARQYTVRNTPQQNGVAERMNKTLLERARCLLSNAGLSRSF 372

Query: 837  *VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAA 736
              E ++   +L NR  S+ ID KT IEVWS + A
Sbjct: 373  WAEAISTTCYLINRSPSTVIDCKTPIEVWSNKPA 406



 Score = 45.1 bits (105), Expect(4) = 2e-29
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = -3

Query: 1769 EWMLHSSVTYHIYPKREWFSSFEKLDNGVVFMGDCHACRIVG 1644
            +W+L S  +YH+ P R WF ++E+   G VFMG+   C+ VG
Sbjct: 52   QWVLDSGCSYHMCPNRSWFLTYEERLGGRVFMGNDMPCKTVG 93



 Score = 42.0 bits (97), Expect(4) = 2e-29
 Identities = 16/36 (44%), Positives = 26/36 (72%)
 Frame = -1

Query: 718 IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQV 611
           +FGC+AYY V  GKL+PR++K +F+ +  GV   ++
Sbjct: 413 VFGCNAYYHVNEGKLEPRSKKGLFMGYGDGVKGYRI 448