BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00017328
         (707 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711...   169   5e-63
emb|CAJ86151.1| H0413E07.4 [Oryza sativa]                             165   8e-61
emb|CAJ86192.1| H0306F03.15 [Oryza sativa]                            165   8e-61
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   163   1e-60
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     163   3e-60
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi...   160   2e-59
gb|KYP57305.1| Retrovirus-related Pol polyprotein from transposo...   151   2e-58
emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]   155   1e-56
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   160   3e-56
gb|KYP69994.1| Retrovirus-related Pol polyprotein from transposo...   156   7e-56
gb|AFB73911.1| polyprotein [Citrus sinensis]                          152   9e-56
gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo...   193   8e-53
ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024...   183   3e-49
gb|ASR75372.1| retrotransposon protein [Oryza nivara]                 182   7e-49
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   179   5e-48
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   179   7e-48
gb|PHT40240.1| Retrovirus-related Pol polyprotein from transposo...   178   1e-47
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   177   3e-47
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   177   4e-47
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote...   176   6e-47

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
 gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  169 bits (429), Expect(2) = 5e-63
 Identities = 80/113 (70%), Positives = 97/113 (85%)
 Frame = +3

Query: 3    YKARLVAKGFAQREGIDYNEVFSPVVKHSSIRILLALVAQYDLELEQLDVKTAFLHGDLD 182
            YKAR+VA+GF QREG+DYNE+FSPVV+H+SIR+LLA+VA  +LELEQLDVKTAFLHG+L+
Sbjct: 855  YKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELE 914

Query: 183  EEIFMNQPQGFKVAGAEEKVCKLKKSLYGLKQFLRQWYKRFYTFITEKKYKRS 341
            EEI+M QP GF+V G E  VCKLKKSLYGLKQ  RQWYKRF +++ +  Y RS
Sbjct: 915  EEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRS 967



 Score =  100 bits (249), Expect(2) = 5e-63
 Identities = 49/89 (55%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
 Frame = +1

Query: 346  YDPCVYYMNLKGGEFVYLLLYVD-MLIASRNKTTIDELKAQLSSEFEMKDLGEAKKILGI 522
            YD CVYY  L    F+YL+LYVD MLIA++ K  I +LK  LS+EFEMKDLG A+KILG+
Sbjct: 969  YDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGM 1028

Query: 523  EIVRDGEKGRISLTQMAYLQKLLQKYNMT 609
            EI+RD E+ ++ L+Q +Y+QK+L ++ M+
Sbjct: 1029 EIIRDRERRKLFLSQRSYIQKVLARFGMS 1057


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa]
          Length = 1205

 Score =  165 bits (417), Expect(2) = 8e-61
 Identities = 77/113 (68%), Positives = 97/113 (85%)
 Frame = +3

Query: 3    YKARLVAKGFAQREGIDYNEVFSPVVKHSSIRILLALVAQYDLELEQLDVKTAFLHGDLD 182
            YKARLVAKG++Q  GID+N++FSPVVKHSSIR LL++VA +D ELEQ+DVKTAFLHG+L+
Sbjct: 806  YKARLVAKGYSQIPGIDFNDIFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELE 865

Query: 183  EEIFMNQPQGFKVAGAEEKVCKLKKSLYGLKQFLRQWYKRFYTFITEKKYKRS 341
            E+I+M QP+GF V G E  VC+LKKSLYGLKQ  RQWYKRF +F+  +K++RS
Sbjct: 866  EDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRS 918



 Score = 97.8 bits (242), Expect(2) = 8e-61
 Identities = 50/88 (56%), Positives = 69/88 (78%), Gaps = 1/88 (1%)
 Frame = +1

Query: 346  YDPCVYYMNLKGGEFVYLLLYVD-MLIASRNKTTIDELKAQLSSEFEMKDLGEAKKILGI 522
            YD CVY + +  G  +YLLLYVD MLIA+++K+ I +LKAQLSSEFEMKDLG AKKILG+
Sbjct: 920  YDSCVY-LKVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGM 978

Query: 523  EIVRDGEKGRISLTQMAYLQKLLQKYNM 606
            EI R+    ++ L+Q  Y++K+L+++NM
Sbjct: 979  EITRERHSDKLYLSQKGYIEKVLRRFNM 1006


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa]
          Length = 1037

 Score =  165 bits (417), Expect(2) = 8e-61
 Identities = 77/113 (68%), Positives = 97/113 (85%)
 Frame = +3

Query: 3   YKARLVAKGFAQREGIDYNEVFSPVVKHSSIRILLALVAQYDLELEQLDVKTAFLHGDLD 182
           YKARLVAKG++Q  GID+N++FSPVVKHSSIR LL++VA +D ELEQ+DVKTAFLHG+L+
Sbjct: 638 YKARLVAKGYSQIPGIDFNDIFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELE 697

Query: 183 EEIFMNQPQGFKVAGAEEKVCKLKKSLYGLKQFLRQWYKRFYTFITEKKYKRS 341
           E+I+M QP+GF V G E  VC+LKKSLYGLKQ  RQWYKRF +F+  +K++RS
Sbjct: 698 EDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRS 750



 Score = 97.8 bits (242), Expect(2) = 8e-61
 Identities = 50/88 (56%), Positives = 69/88 (78%), Gaps = 1/88 (1%)
 Frame = +1

Query: 346  YDPCVYYMNLKGGEFVYLLLYVD-MLIASRNKTTIDELKAQLSSEFEMKDLGEAKKILGI 522
            YD CVY + +  G  +YLLLYVD MLIA+++K+ I +LKAQLSSEFEMKDLG AKKILG+
Sbjct: 752  YDSCVY-LKVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGM 810

Query: 523  EIVRDGEKGRISLTQMAYLQKLLQKYNM 606
            EI R+    ++ L+Q  Y++K+L+++NM
Sbjct: 811  EITRERHSDKLYLSQKGYIEKVLRRFNM 838


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  163 bits (413), Expect(2) = 1e-60
 Identities = 76/113 (67%), Positives = 96/113 (84%)
 Frame = +3

Query: 3    YKARLVAKGFAQREGIDYNEVFSPVVKHSSIRILLALVAQYDLELEQLDVKTAFLHGDLD 182
            YKARLVAKG++Q  GID+N+VFSP++KHSSIR LL +VA +D ELEQ+DVKTAFLHG+L+
Sbjct: 915  YKARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELE 974

Query: 183  EEIFMNQPQGFKVAGAEEKVCKLKKSLYGLKQFLRQWYKRFYTFITEKKYKRS 341
            E+I+M QP+GF V G E  VC+LKKSLYGLKQ  RQWYKRF +F+  +K++RS
Sbjct: 975  EDIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRS 1027



 Score = 99.0 bits (245), Expect(2) = 1e-60
 Identities = 53/102 (51%), Positives = 75/102 (73%), Gaps = 3/102 (2%)
 Frame = +1

Query: 346  YDPCVYYMNLKGGEFVYLLLYVD-MLIASRNKTTIDELKAQLSSEFEMKDLGEAKKILGI 522
            YD CVY + +  G  +YLLLYVD MLIA+++K+ I +LKAQLSSEF MKDLG AKKILG+
Sbjct: 1029 YDSCVY-LKVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKKILGM 1087

Query: 523  EIVRDGEKGRISLTQMAYLQKLLQKYNM--TQKAYFRSCSRN 642
            EI R+   G++ L+Q  Y++K+L+++NM   +   FR C ++
Sbjct: 1088 EITRERHSGKLYLSQKGYIKKVLRRFNMHDVKPIIFRLCPQS 1129


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  163 bits (413), Expect(2) = 3e-60
 Identities = 76/113 (67%), Positives = 96/113 (84%)
 Frame = +3

Query: 3    YKARLVAKGFAQREGIDYNEVFSPVVKHSSIRILLALVAQYDLELEQLDVKTAFLHGDLD 182
            YKARLVAKG++Q  GID+N+VFSP++KHSSIR LL +VA +D ELEQ+DVKTAFLHG+L+
Sbjct: 915  YKARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELE 974

Query: 183  EEIFMNQPQGFKVAGAEEKVCKLKKSLYGLKQFLRQWYKRFYTFITEKKYKRS 341
            E+I+M QP+GF V G E  VC+LKKSLYGLKQ  RQWYKRF +F+  +K++RS
Sbjct: 975  EDIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRS 1027



 Score = 97.4 bits (241), Expect(2) = 3e-60
 Identities = 50/88 (56%), Positives = 69/88 (78%), Gaps = 1/88 (1%)
 Frame = +1

Query: 346  YDPCVYYMNLKGGEFVYLLLYVD-MLIASRNKTTIDELKAQLSSEFEMKDLGEAKKILGI 522
            YD CVY + +  G  +YLLLYVD MLIA+++K+ I +LKAQLSSEF MKDLG AKKILG+
Sbjct: 1029 YDSCVY-LKVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKKILGM 1087

Query: 523  EIVRDGEKGRISLTQMAYLQKLLQKYNM 606
            EI R+   G++ L+Q  Y++K+L+++NM
Sbjct: 1088 EITRERHSGKLYLSQKGYIKKVLRRFNM 1115


>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  160 bits (406), Expect(2) = 2e-59
 Identities = 81/120 (67%), Positives = 97/120 (80%)
 Frame = +3

Query: 3    YKARLVAKGFAQREGIDYNEVFSPVVKHSSIRILLALVAQYDLELEQLDVKTAFLHGDLD 182
            YKARLVAKGF+QREGIDY E+FSPVVKH SIR LL++V Q+D+ELEQLDVKTAFLHG+LD
Sbjct: 887  YKARLVAKGFSQREGIDYQEIFSPVVKHVSIRYLLSIVVQFDMELEQLDVKTAFLHGNLD 946

Query: 183  EEIFMNQPQGFKVAGAEEKVCKLKKSLYGLKQFLRQWYKRFYTFITEKKYKRSLI*PLCV 362
            E I M+QP+G++   + EKVC LKKSLYGLKQ  RQW +RF +F+    Y+RS   P CV
Sbjct: 947  EYILMSQPEGYEDEDSTEKVCLLKKSLYGLKQSPRQWNQRFDSFMINSGYQRSKYNP-CV 1005



 Score = 97.4 bits (241), Expect(2) = 2e-59
 Identities = 49/90 (54%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
 Frame = +1

Query: 346  YDPCVYYMNLKGGEFVYLLLYVD-MLIASRNKTTIDELKAQLSSEFEMKDLGEAKKILGI 522
            Y+PCVY   L  G ++YLLLYVD MLIAS+NK  I +LK  L+ EFEMKDLG A+KILG+
Sbjct: 1001 YNPCVYTQQLNDGSYIYLLLYVDDMLIASQNKDQIQKLKESLNREFEMKDLGPARKILGM 1060

Query: 523  EIVRDGEKGRISLTQMAYLQKLLQKYNMTQ 612
            EI R+ E+G + L+Q  Y+  +L+ + M Q
Sbjct: 1061 EITRNREQGILDLSQSEYVAGVLRAFGMDQ 1090


>gb|KYP57305.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 530

 Score =  151 bits (382), Expect(2) = 2e-58
 Identities = 71/113 (62%), Positives = 92/113 (81%)
 Frame = +3

Query: 3   YKARLVAKGFAQREGIDYNEVFSPVVKHSSIRILLALVAQYDLELEQLDVKTAFLHGDLD 182
           +KARLVAKGF+Q+EGIDY+EVFSPVVKH +IR+LLA+V+  D++LEQL+VK AFLHG+L+
Sbjct: 257 FKARLVAKGFSQKEGIDYHEVFSPVVKHKTIRVLLAMVSALDMKLEQLNVKIAFLHGNLE 316

Query: 183 EEIFMNQPQGFKVAGAEEKVCKLKKSLYGLKQFLRQWYKRFYTFITEKKYKRS 341
           E+++M+QP GF   G +  VC LKKSLYGLKQ  RQWYKRF  F+    + R+
Sbjct: 317 EQVYMSQPDGFLEVGKKNHVCLLKKSLYGLKQSPRQWYKRFDAFMISYNFVRN 369



 Score =  103 bits (257), Expect(2) = 2e-58
 Identities = 53/88 (60%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
 Frame = +1

Query: 346 YDPCVYYMNLKGGEFVYLLLYVD-MLIASRNKTTIDELKAQLSSEFEMKDLGEAKKILGI 522
           +D CVY   L  G ++YLLLYVD MLIA+++KT ID LKA LSSEFEMKDLG AKKILG+
Sbjct: 371 FDNCVYSRKLSDGSYIYLLLYVDDMLIAAKSKTDIDALKAMLSSEFEMKDLGTAKKILGM 430

Query: 523 EIVRDGEKGRISLTQMAYLQKLLQKYNM 606
           EI RD   G + ++Q  Y++KLLQ + M
Sbjct: 431 EIWRDRNAGLLYVSQKKYIEKLLQSFQM 458


>emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]
          Length = 939

 Score =  155 bits (391), Expect(2) = 1e-56
 Identities = 74/113 (65%), Positives = 92/113 (81%)
 Frame = +3

Query: 3   YKARLVAKGFAQREGIDYNEVFSPVVKHSSIRILLALVAQYDLELEQLDVKTAFLHGDLD 182
           +KA LVAK + QREG+D+NE+FSP+VKH+SIR+LLALV+ ++LEL Q+DV  AFLHG+L+
Sbjct: 522 FKATLVAKAYTQREGMDFNEIFSPMVKHTSIRVLLALVSLWNLELXQMDVNRAFLHGELE 581

Query: 183 EEIFMNQPQGFKVAGAEEKVCKLKKSLYGLKQFLRQWYKRFYTFITEKKYKRS 341
           EEIFM QP+GF V G E +VC LK+SLYGLKQ  RQWYKRF  F+T   Y RS
Sbjct: 582 EEIFMQQPKGFIVKGKENQVCLLKRSLYGLKQSPRQWYKRFDKFMTSVGYSRS 634



 Score = 94.0 bits (232), Expect(2) = 1e-56
 Identities = 49/88 (55%), Positives = 64/88 (72%), Gaps = 1/88 (1%)
 Frame = +1

Query: 346 YDPCVYYMNLKGGEFVYLLLYVD-MLIASRNKTTIDELKAQLSSEFEMKDLGEAKKILGI 522
           +D CVY   L  G +VYLLLYVD ML+AS++ T I  LK QL SEFEMKDLG AKKILGI
Sbjct: 636 FDNCVYMRKLTNGSYVYLLLYVDDMLLASKSITEIAHLKTQLQSEFEMKDLGCAKKILGI 695

Query: 523 EIVRDGEKGRISLTQMAYLQKLLQKYNM 606
           E  RD   G ++++Q  Y++++L+ +NM
Sbjct: 696 EPYRDRSTGILTISQRDYIERVLKIFNM 723


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  160 bits (404), Expect(2) = 3e-56
 Identities = 76/113 (67%), Positives = 95/113 (84%)
 Frame = +3

Query: 3    YKARLVAKGFAQREGIDYNEVFSPVVKHSSIRILLALVAQYDLELEQLDVKTAFLHGDLD 182
            YK+RLVAKGF+Q+EGIDYNEVFSPVVKH SIR+LLA+V+ ++LEL+QLDVKTAFLHG+L+
Sbjct: 978  YKSRLVAKGFSQKEGIDYNEVFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLE 1037

Query: 183  EEIFMNQPQGFKVAGAEEKVCKLKKSLYGLKQFLRQWYKRFYTFITEKKYKRS 341
            EEI+M QP+GF  +   + VC LKKSLYGLKQ  RQWYKRF  F+   ++ R+
Sbjct: 1038 EEIYMKQPEGFVDSEKSDHVCFLKKSLYGLKQSPRQWYKRFDAFMVSHEFMRN 1090



 Score = 87.4 bits (215), Expect(2) = 3e-56
 Identities = 49/103 (47%), Positives = 66/103 (64%), Gaps = 5/103 (4%)
 Frame = +1

Query: 346  YDPCVYYMNLKGGEFVYLLLYVD-MLIASRNKTTIDELKAQLSSEFEMKDLGEAKKILGI 522
            YD CVY+  L  G F+YLLLYVD MLIA++N+  I++LK  LSSEFEMKDLG AKKILG+
Sbjct: 1092 YDSCVYFKTLPDGSFIYLLLYVDDMLIAAKNRAEINKLKQLLSSEFEMKDLGAAKKILGM 1151

Query: 523  EIVRDGEKGRISL----TQMAYLQKLLQKYNMTQKAYFRSCSR 639
            EI RD +    +L     ++ Y++ +     +    Y   C+R
Sbjct: 1152 EIWRDRDAXLFTLPSTDEEVEYMKSVPYSSVVGSLMYAMVCTR 1194


>gb|KYP69994.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 510

 Score =  156 bits (395), Expect(2) = 7e-56
 Identities = 80/123 (65%), Positives = 98/123 (79%)
 Frame = +3

Query: 3   YKARLVAKGFAQREGIDYNEVFSPVVKHSSIRILLALVAQYDLELEQLDVKTAFLHGDLD 182
           YKARLVAKGF+Q+EG+D+NE+FSPVV+H+SIR+LLALVA  DLELEQLDVKTAFLHG L+
Sbjct: 58  YKARLVAKGFSQKEGVDFNEIFSPVVRHTSIRVLLALVACQDLELEQLDVKTAFLHGRLE 117

Query: 183 EEIFMNQPQGFKVAGAEEKVCKLKKSLYGLKQFLRQWYKRFYTFITEKKYKRSLI*PLCV 362
           E+I M QP+GF      + VC+L+KSLYGLKQ  RQWYKRF TF+  K + +S     CV
Sbjct: 118 EDILMKQPEGF-----VKIVCQLQKSLYGLKQSPRQWYKRFDTFMINKGFNKSPY-DCCV 171

Query: 363 LHE 371
            H+
Sbjct: 172 YHK 174



 Score = 89.7 bits (221), Expect(2) = 7e-56
 Identities = 45/88 (51%), Positives = 63/88 (71%), Gaps = 1/88 (1%)
 Frame = +1

Query: 346 YDPCVYYMNLKGGEFVYLLLYVD-MLIASRNKTTIDELKAQLSSEFEMKDLGEAKKILGI 522
           YD CVY+  ++ G  +YLLLYVD +LIA++NK+ I  LKA LS EF+MK+LG AK+ILG+
Sbjct: 167 YDCCVYHKKVEDGSMIYLLLYVDDILIAAKNKSEIQNLKALLSGEFDMKNLGAAKRILGM 226

Query: 523 EIVRDGEKGRISLTQMAYLQKLLQKYNM 606
           EI RD  + ++   Q  Y+QK+L +  M
Sbjct: 227 EIYRDRSQKKLFHCQKDYIQKILHRLGM 254


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  152 bits (384), Expect(2) = 9e-56
 Identities = 72/112 (64%), Positives = 90/112 (80%)
 Frame = +3

Query: 3    YKARLVAKGFAQREGIDYNEVFSPVVKHSSIRILLALVAQYDLELEQLDVKTAFLHGDLD 182
            Y+ARLV KG+AQ+EGID+NE+FSPVV+ +++RI+LA+ A +DL LEQLDVKTAFLHG+L+
Sbjct: 855  YRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELE 914

Query: 183  EEIFMNQPQGFKVAGAEEKVCKLKKSLYGLKQFLRQWYKRFYTFITEKKYKR 338
            EEI+M QP+GF   G E  VC+L KSLYGLKQ  R WYKRF +FI    Y R
Sbjct: 915  EEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAPRYWYKRFDSFIMSLGYNR 966



 Score = 93.6 bits (231), Expect(2) = 9e-56
 Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 1/87 (1%)
 Frame = +1

Query: 349  DPCVYYMNLKGGEFVYLLLYVD-MLIASRNKTTIDELKAQLSSEFEMKDLGEAKKILGIE 525
            D C YY   +  +F+ LLLYVD ML+A  NK  I ELKAQL+ EFEMKDLG A KILG++
Sbjct: 970  DHCAYYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQ 1029

Query: 526  IVRDGEKGRISLTQMAYLQKLLQKYNM 606
            I RD    +I L+Q  YL+K+L+++NM
Sbjct: 1030 IHRDRNNMKIWLSQKNYLKKILRRFNM 1056


>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1032

 Score =  193 bits (490), Expect = 8e-53
 Identities = 110/236 (46%), Positives = 146/236 (61%), Gaps = 1/236 (0%)
 Frame = +3

Query: 3    YKARLVAKGFAQREGIDYNEVFSPVVKHSSIRILLALVAQYDLELEQLDVKTAFLHGDLD 182
            YKARLVAKG+AQ+EGIDYNEVFSPVVKHSSIR+LLALVAQ D+EL Q+DVKTAFLHGDL+
Sbjct: 643  YKARLVAKGYAQKEGIDYNEVFSPVVKHSSIRVLLALVAQLDMELVQMDVKTAFLHGDLE 702

Query: 183  EEIFMNQPQGFKVAGAEEKVCKLKKSLYGLKQFLRQWYKRFYTFITEKKYKRSLI*PLCV 362
            EEI+M QP+GFKVAG E   CKL+KSLYGLKQ  RQWYKRF  F+  +KY RS       
Sbjct: 703  EEIYMTQPEGFKVAGKENMFCKLEKSLYGLKQSPRQWYKRFDKFMLRQKYTRSKYDHCVY 762

Query: 363  LHEF-KGWRVCLLATLR*HADCFQEQDNDR*AKSSIVFRIRDERSRRSKENSGYRDSQRR 539
            L +   G  + LL  +                   I  + ++E  +   + +G  + +  
Sbjct: 763  LRKLHDGSFIYLLLYV---------------DDMLIASKNKEEIEKLKTQLNGEFEMKDL 807

Query: 540  GEGEN*FDSDGISSEVASEIQYDSEGILQKLLQKYNVGSDTKAVNVPLAPHFKLSA 707
            GE +     +         +    +  L+++L+++ +  ++K V+ PLA HFKLSA
Sbjct: 808  GEAKKILGMEISRDRKLGRLCLTQKEYLKRVLKRFGISDESKPVSTPLASHFKLSA 863


>ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024343 [Solanum pennellii]
          Length = 1892

 Score =  183 bits (464), Expect = 3e-49
 Identities = 111/234 (47%), Positives = 147/234 (62%)
 Frame = +3

Query: 3    YKARLVAKGFAQREGIDYNEVFSPVVKHSSIRILLALVAQYDLELEQLDVKTAFLHGDLD 182
            +KARLVAKGF+Q+EGIDYNE+FSPVVKHSSIR+LLALVAQ+DLEL+QLDVKTAFLHGDL+
Sbjct: 1442 FKARLVAKGFSQKEGIDYNEIFSPVVKHSSIRVLLALVAQFDLELQQLDVKTAFLHGDLE 1501

Query: 183  EEIFMNQPQGFKVAGAEEKVCKLKKSLYGLKQFLRQWYKRFYTFITEKKYKRSLI*PLCV 362
            E I+M+QP+GF   G E+ VC+LKKSLYGLKQ  RQWYKRF  F+T   + RS     CV
Sbjct: 1502 ETIYMDQPEGFLAEGKEDHVCQLKKSLYGLKQSPRQWYKRFDAFMTTHGFSRSAF-DSCV 1560

Query: 363  LHEFKGWRVCLLATLR*HADCFQEQDNDR*AKSSIVFRIRDERSRRSKENSGYRDSQRRG 542
             H+       +   L           +D    ++ +  I   +   SKE     D +  G
Sbjct: 1561 YHKKMSGNSMIYLLL---------YVDDMLIAANNITEINILKKLLSKE----FDMKDLG 1607

Query: 543  EGEN*FDSDGISSEVASEIQYDSEGILQKLLQKYNVGSDTKAVNVPLAPHFKLS 704
              +     + IS E    +    +  ++K+L+++N+   +K V+ PLA HFKLS
Sbjct: 1608 VAKKILGME-ISRE-NGVVHLSQKRYIRKVLERFNMDM-SKPVSTPLASHFKLS 1658


>gb|ASR75372.1| retrotransposon protein [Oryza nivara]
          Length = 1170

 Score =  182 bits (461), Expect = 7e-49
 Identities = 103/235 (43%), Positives = 143/235 (60%)
 Frame = +3

Query: 3    YKARLVAKGFAQREGIDYNEVFSPVVKHSSIRILLALVAQYDLELEQLDVKTAFLHGDLD 182
            +KARLVAKGF+Q  G+DYN+VFSPVVKHSSIR   ++VA +DLELEQLDVKTAFLHG+L+
Sbjct: 790  FKARLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELE 849

Query: 183  EEIFMNQPQGFKVAGAEEKVCKLKKSLYGLKQFLRQWYKRFYTFITEKKYKRSLI*PLCV 362
            EEI+M+QP+GF V G E+ VCKLK+SLYGLKQ  RQWYKRF +F+    +KRS       
Sbjct: 850  EEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVY 909

Query: 363  LHEFKGWRVCLLATLR*HADCFQEQDNDR*AKSSIVFRIRDERSRRSKENSGYRDSQRRG 542
            +    G  + LL  +                   I  + +++ +   K+ S   D +  G
Sbjct: 910  IKFVNGSPIYLLLYV---------------DDMLIAAKSKEQITTLKKQLSSEFDMKDLG 954

Query: 543  EGEN*FDSDGISSEVASEIQYDSEGILQKLLQKYNVGSDTKAVNVPLAPHFKLSA 707
              +     +      +  +    +  ++K+LQ++N+  D K V+ P+APHFKLSA
Sbjct: 955  AAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNM-HDAKPVSTPIAPHFKLSA 1008


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  179 bits (455), Expect = 5e-48
 Identities = 103/235 (43%), Positives = 143/235 (60%)
 Frame = +3

Query: 3    YKARLVAKGFAQREGIDYNEVFSPVVKHSSIRILLALVAQYDLELEQLDVKTAFLHGDLD 182
            +KARLVAKGF+Q  G+DYN+VFSPVVKHSSIR   ++VA +DLELEQLDVKTAFLHG+L+
Sbjct: 870  FKARLVAKGFSQIVGVDYNDVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELE 929

Query: 183  EEIFMNQPQGFKVAGAEEKVCKLKKSLYGLKQFLRQWYKRFYTFITEKKYKRSLI*PLCV 362
            EEI+M+QP+GF V G E+ VCKLK+SLYGLKQ  RQWYKRF +F+    +KRS       
Sbjct: 930  EEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVY 989

Query: 363  LHEFKGWRVCLLATLR*HADCFQEQDNDR*AKSSIVFRIRDERSRRSKENSGYRDSQRRG 542
            +    G  + LL  +                   I  + +++ +   K+ S   D +  G
Sbjct: 990  IKFVNGSPIYLLLYV---------------DDILIAAKSKEQITTLKKQLSSEFDMKDLG 1034

Query: 543  EGEN*FDSDGISSEVASEIQYDSEGILQKLLQKYNVGSDTKAVNVPLAPHFKLSA 707
              +     +    + +  +    +  ++K+LQ +N+  D K V+ P+APHFKLSA
Sbjct: 1035 AAKKILGMEITRDKNSGLLFLSQQSYIKKVLQCFNM-HDAKPVSTPIAPHFKLSA 1088


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  179 bits (454), Expect = 7e-48
 Identities = 110/236 (46%), Positives = 150/236 (63%), Gaps = 1/236 (0%)
 Frame = +3

Query: 3    YKARLVAKGFAQREGIDYNEVFSPVVKHSSIRILLALVAQYDLELEQLDVKTAFLHGDLD 182
            YKARLVA+G++Q  G+DYN+VFSPVVKHSSIR  L++VA +DLELEQLDVKTAFLHG+L+
Sbjct: 881  YKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELE 940

Query: 183  EEIFMNQPQGFKVAGAEEKVCKLKKSLYGLKQFLRQWYKRFYTFITEKKYKRSLI*PLCV 362
            E+I+M+QP+GF V G E+ VCKLK+SLYGLKQ  RQW KRF +F+    +KRS       
Sbjct: 941  EDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVY 1000

Query: 363  LHEFKGWRVCLLATLR*HADCFQEQDNDR*AKSSIVFRIRDERSRRSKENSGYRDSQRRG 542
            +    G  + LL  +          D    AKS I      E ++  K  S   D +  G
Sbjct: 1001 IKHVNGSPIYLLLYV---------DDMLIAAKSKI------EITKLKKLLSSEFDMKDLG 1045

Query: 543  EGEN*FDSDGISSEVASEIQYDSE-GILQKLLQKYNVGSDTKAVNVPLAPHFKLSA 707
              +     + IS +  S + + S+   ++K+LQ++N+  + KAV+ P+APHFKLSA
Sbjct: 1046 SAKKILVME-ISRDRKSGLLFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSA 1099


>gb|PHT40240.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Capsicum
            baccatum]
          Length = 1526

 Score =  178 bits (452), Expect = 1e-47
 Identities = 109/235 (46%), Positives = 140/235 (59%)
 Frame = +3

Query: 3    YKARLVAKGFAQREGIDYNEVFSPVVKHSSIRILLALVAQYDLELEQLDVKTAFLHGDLD 182
            YKAR V +GF Q+EGID+NEVFSPVV+HSSIR+LLALVA YDLELEQLDVKTAFLHG+L+
Sbjct: 535  YKARFVVRGFDQQEGIDFNEVFSPVVRHSSIRVLLALVALYDLELEQLDVKTAFLHGNLE 594

Query: 183  EEIFMNQPQGFKVAGAEEKVCKLKKSLYGLKQFLRQWYKRFYTFITEKKYKRSLI*PLCV 362
            EEI++ QP+GF V G E  VC+LKKSLYGLKQ  RQWYKRF +F+T   Y RS     CV
Sbjct: 595  EEIYIQQPEGFVVPGKENHVCRLKKSLYGLKQSPRQWYKRFDSFMTGHGYSRSSY-DNCV 653

Query: 363  LHEFKGWRVCLLATLR*HADCFQEQDNDR*AKSSIVFRIRDERSRRSKENSGYRDSQRRG 542
               F+      L  L  + D       D+     +  ++  E            D +  G
Sbjct: 654  Y--FQKLSDGSLVYLLLYVDDMLIAARDKTLVDKLKVQLNSE-----------FDMKDLG 700

Query: 543  EGEN*FDSDGISSEVASEIQYDSEGILQKLLQKYNVGSDTKAVNVPLAPHFKLSA 707
              +     +      A ++    +  + K+L ++ +  D KAVN PLA HFKLS+
Sbjct: 701  PAKKILGMEINRDRQAGKLFLSQKKYVMKMLDRFGM-RDCKAVNTPLAAHFKLSS 754


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|AAU89150.1| integrase core domain containing protein [Oryza sativa Japonica
            Group]
 gb|ABF98081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1322

 Score =  177 bits (449), Expect = 3e-47
 Identities = 100/235 (42%), Positives = 140/235 (59%)
 Frame = +3

Query: 3    YKARLVAKGFAQREGIDYNEVFSPVVKHSSIRILLALVAQYDLELEQLDVKTAFLHGDLD 182
            +K RLVAKGF+Q  G+DYN+VFSPVVKHSSIR   ++V  +DLELEQLDVKT FLHG+L+
Sbjct: 870  FKVRLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVTMHDLELEQLDVKTTFLHGELE 929

Query: 183  EEIFMNQPQGFKVAGAEEKVCKLKKSLYGLKQFLRQWYKRFYTFITEKKYKRSLI*PLCV 362
            EEI+M+QP+GF V G E+ VCKLK+SLYGLKQ  RQWYKRF +F+    +KRS       
Sbjct: 930  EEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVY 989

Query: 363  LHEFKGWRVCLLATLR*HADCFQEQDNDR*AKSSIVFRIRDERSRRSKENSGYRDSQRRG 542
            +    G  + LL  +                   I  + +++ +   K+ S   D +  G
Sbjct: 990  IKFVNGSPIYLLLYV---------------DDMLIAAKSKEQITTLKKQLSSEFDMKDLG 1034

Query: 543  EGEN*FDSDGISSEVASEIQYDSEGILQKLLQKYNVGSDTKAVNVPLAPHFKLSA 707
              +     +      +  +    +  ++K+LQ++N+  D K V+ P+APHFKLSA
Sbjct: 1035 AAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNM-HDAKPVSTPIAPHFKLSA 1088


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2340

 Score =  177 bits (448), Expect = 4e-47
 Identities = 99/235 (42%), Positives = 144/235 (61%)
 Frame = +3

Query: 3    YKARLVAKGFAQREGIDYNEVFSPVVKHSSIRILLALVAQYDLELEQLDVKTAFLHGDLD 182
            YKARL+AKG++Q  GID+N+VFSPVVKHSSIR LL++VA +D ELEQ+DVKTAFLHG+L+
Sbjct: 1087 YKARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELE 1146

Query: 183  EEIFMNQPQGFKVAGAEEKVCKLKKSLYGLKQFLRQWYKRFYTFITEKKYKRSLI*PLCV 362
            E+I+M QP+GF V G E  VC+LKKSLYGLKQ  RQWYKRF +F+  +K++RS       
Sbjct: 1147 EDIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVY 1206

Query: 363  LHEFKGWRVCLLATLR*HADCFQEQDNDR*AKSSIVFRIRDERSRRSKENSGYRDSQRRG 542
            L    G  + LL  +                   I  + + E ++   + S   + +  G
Sbjct: 1207 LKVVDGSAIYLLLYV---------------DDMLIAAKDKSEIAKLKAQLSSEFEMKDLG 1251

Query: 543  EGEN*FDSDGISSEVASEIQYDSEGILQKLLQKYNVGSDTKAVNVPLAPHFKLSA 707
              +     +      + ++    +G ++K+L+++N+  D K V+ PLA HF+LS+
Sbjct: 1252 AAKKILGMEITRKRHSFKLYLSQKGYIEKVLRRFNM-HDAKPVSTPLAAHFRLSS 1305


>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
            Group]
 gb|AAN04164.1| Putative retrotransposon protein [Oryza sativa Japonica Group]
 gb|AAP53029.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
            [Oryza sativa Japonica Group]
          Length = 1229

 Score =  176 bits (447), Expect = 6e-47
 Identities = 102/236 (43%), Positives = 144/236 (61%), Gaps = 1/236 (0%)
 Frame = +3

Query: 3    YKARLVAKGFAQREGIDYNEVFSPVVKHSSIRILLALVAQYDLELEQLDVKTAFLHGDLD 182
            + ARLVAKGF+Q  G+DYN+VFSPVVKHSSIR    +VA +DLELEQLDVKT FLHG+L+
Sbjct: 816  FNARLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFCIVAMHDLELEQLDVKTIFLHGELE 875

Query: 183  EEIFMNQPQGFKVAGAEEKVCKLKKSLYGLKQFLRQWYKRFYTFITEKKYKRSLI*PLCV 362
            EEI+M+QP+GF V G E+ VCKLK+SLYGLKQ  RQWYKRF +F+    +KRS       
Sbjct: 876  EEIYMDQPEGFIVPGKEDDVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVY 935

Query: 363  LHEFKGWRVCLLATLR*HADCFQEQDNDR*AKSSIVFRIRDERSRRSKENSGYRDSQRRG 542
            +    G  + LL  +                   I  + +++ +   K+ S   D +   
Sbjct: 936  IKFVNGSHIYLLLYV---------------DDMLIAAKSKEQITTLKKQLSSEFDMKDLV 980

Query: 543  EGEN*FDSDGISSEVASEIQY-DSEGILQKLLQKYNVGSDTKAVNVPLAPHFKLSA 707
              +     + I+ ++ S + +   +  ++K+LQ++N+  D K V+ P+APHFKLSA
Sbjct: 981  ASKKILGME-ITRDINSGLLFLSQQSYIKKVLQRFNI-HDAKPVSTPIAPHFKLSA 1034