BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00016766
         (3932 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020266835.1| probable RNA-dependent RNA polymerase SHL2 [...  1822   0.0  
ref|XP_008778879.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA...  1634   0.0  
ref|XP_010921974.1| PREDICTED: probable RNA-dependent RNA polyme...  1631   0.0  
ref|XP_020098906.1| probable RNA-dependent RNA polymerase SHL2 [...  1604   0.0  
gb|OAY64204.1| putative RNA-dependent RNA polymerase SHL2 [Anana...  1603   0.0  
ref|XP_020108971.1| probable RNA-dependent RNA polymerase SHL2 [...  1584   0.0  
gb|OAY62820.1| putative RNA-dependent RNA polymerase SHL2 [Anana...  1578   0.0  
ref|XP_018678117.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA...  1569   0.0  
gb|OVA07789.1| RNA recognition motif domain [Macleaya cordata]       1542   0.0  
ref|XP_015885879.1| PREDICTED: RNA-dependent RNA polymerase 6 [Z...  1508   0.0  
ref|XP_010254390.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1506   0.0  
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...  1500   0.0  
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...  1496   0.0  
ref|XP_011039698.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1495   0.0  
gb|APR63701.1| SILENCING DEFECTIVE family protein 1 [Populus tom...  1494   0.0  
ref|XP_011026450.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1487   0.0  
ref|XP_021597106.1| RNA-dependent RNA polymerase 6 [Manihot escu...  1483   0.0  
ref|XP_002515520.1| PREDICTED: RNA-dependent RNA polymerase 6 [R...  1481   0.0  
ref|XP_021670990.1| RNA-dependent RNA polymerase 6-like [Hevea b...  1477   0.0  
ref|XP_010648660.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1477   0.0  

>ref|XP_020266835.1| probable RNA-dependent RNA polymerase SHL2 [Asparagus officinalis]
 gb|ONK69832.1| uncharacterized protein A4U43_C05F27200 [Asparagus officinalis]
          Length = 1174

 Score = 1822 bits (4720), Expect = 0.0
 Identities = 884/1174 (75%), Positives = 1019/1174 (86%), Gaps = 7/1174 (0%)
 Frame = -3

Query: 3846 MGSLGSSN-----ASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSS 3682
            MGSL SS+     A HKD +ITQVS+AGFDA  TTA+SL  SLE +L+CVIWR RLKSSS
Sbjct: 1    MGSLDSSSKTQVQAHHKDKVITQVSIAGFDA-QTTAESLHLSLEKSLNCVIWRSRLKSSS 59

Query: 3681 TPPDSYPDFDISEDMKKKKQPARPSPSFTAPHAFLQFATPAGAQRVLDAAARCDLVLGSK 3502
            TPPDSYPDF+        K+P + S +   PHAFLQF TPAGAQR +DAA RC+L++G K
Sbjct: 60   TPPDSYPDFEFPNPKPTSKKPTKSSRAPVVPHAFLQFGTPAGAQRAIDAAGRCELLVGQK 119

Query: 3501 PLIARASSDTSYRINRRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESNVNFLID 3322
            P++ ++S+D+ +RINRRR I PF F D  FEIGSL  P+ F  AW+LDPKP++ V FL+D
Sbjct: 120  PVVVQSSADSLHRINRRRQISPFVFKDVCFEIGSLVGPSEFAVAWRLDPKPDNAVEFLVD 179

Query: 3321 PFDNSCKLLFTGDVAFTVNGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLNL 3142
            PFD+SCKL+F+ +VAFTV GT++ + IRCN KLEFLLRDVME+K+  D M  V + Q+ L
Sbjct: 180  PFDSSCKLMFSREVAFTVKGTKDVDFIRCNLKLEFLLRDVMEVKVTTDAMPFVFLIQMGL 239

Query: 3141 GAAPLVYYRTADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKL 2962
            GAAPL+YYRTADDDIH++   +LLDDEDPWIR+TDFTP+GAIGRCNCYRISM PRF  KL
Sbjct: 240  GAAPLIYYRTADDDIHDTSTGHLLDDEDPWIRSTDFTPNGAIGRCNCYRISMSPRFRGKL 299

Query: 2961 KRAMEYMKERRIDGLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVNFANLFMVNALVHK 2782
            ++A+ YM+ERRI+GLRP+RPI+VKDE N G +++DPFFCFH KEGV+F N+FMVNALVHK
Sbjct: 300  EKALAYMRERRIEGLRPERPILVKDEGNPGFVSSDPFFCFHNKEGVSFVNMFMVNALVHK 359

Query: 2781 GIFSQHRVTEEFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIK 2602
            GIF+QHR+TEEFFGLL  +S ++NDVALRHIY YKKP+FDA  RLKMVQ+WLL F RLIK
Sbjct: 360  GIFNQHRLTEEFFGLLRKKSEVLNDVALRHIYGYKKPIFDAYGRLKMVQDWLLKFPRLIK 419

Query: 2601 IPTASADNMEVRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNS 2422
             P  S DNMEVRRLVITPTKAYCLPPEIELANRVLR+YRD+SDRFLRVTFMDEGMQ LN 
Sbjct: 420  APIPSDDNMEVRRLVITPTKAYCLPPEIELANRVLRKYRDISDRFLRVTFMDEGMQSLNI 479

Query: 2421 NVLNFYVAPIVREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDQSAW 2242
            +VL+FY APIV+E++ +S SQKT MFRRV++I+ KGF+LCGRKYSFLAFSSNQLRD+SAW
Sbjct: 480  HVLSFYPAPIVKEVTISSSSQKTTMFRRVRDIMYKGFHLCGRKYSFLAFSSNQLRDKSAW 539

Query: 2241 FFAEDKHTSVHDITSWMGKFKDKNVAKYAARMGQCFSSTYATVEVPSYEVVPFLPDIKRN 2062
            FFAEDK TSV DITSWMGKF++KNVAKYAARMGQCFSSTYATV++   EV   LPDI+  
Sbjct: 540  FFAEDKGTSVQDITSWMGKFQNKNVAKYAARMGQCFSSTYATVQLHPGEVNQKLPDIENE 599

Query: 2061 NYCFSDGIGKITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRE 1882
             YCFSDGIGKITP LA EVA+KL+LTE PPSAYQIR+AG KGV+AVWPGN+DGIRLSLR 
Sbjct: 600  KYCFSDGIGKITPALATEVAEKLRLTETPPSAYQIRFAGCKGVVAVWPGNNDGIRLSLRP 659

Query: 1881 SMYKFQSEHTMLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVN 1702
            SM KFQS H++LEVVSWTRFQPGFLNRQIVTLLSAL V DDVF+RMQDSMV KLD+ML++
Sbjct: 660  SMNKFQSSHSVLEVVSWTRFQPGFLNRQIVTLLSALGVDDDVFSRMQDSMVSKLDKMLID 719

Query: 1701 PDVAFDVLTTSCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSLKARIFVPK 1522
            PDVAFDVLT+SCAEQGN+AAMMLSAGF PQ EPHLKAML CIRLSQLKDLS KARIFVPK
Sbjct: 720  PDVAFDVLTSSCAEQGNIAAMMLSAGFTPQTEPHLKAMLLCIRLSQLKDLSSKARIFVPK 779

Query: 1521 GRWLMGCFDELGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVVLAKNPC 1342
            GRWLMGC DELGVLE+GQCFIQ SSPSLENCFLKHGSKFSG+K NKQVIVGT+ LAKNPC
Sbjct: 780  GRWLMGCLDELGVLEEGQCFIQVSSPSLENCFLKHGSKFSGSKVNKQVIVGTIALAKNPC 839

Query: 1341 LHPGDVRILEAVDVPGLRHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPS 1162
            LHPGD+RILEAVDVPGL HLVDCLVFPQKG+RPHSNEASGSDLDGDLYFVTWDENLIPPS
Sbjct: 840  LHPGDIRILEAVDVPGLHHLVDCLVFPQKGERPHSNEASGSDLDGDLYFVTWDENLIPPS 899

Query: 1161 RRSWMPMAYTPAVPKDEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDD 982
            ++SW P+ Y PA  K+EPR+IVHQ I+DFFV+N+S+ENLGVICNAHVVHADLSDYGAMDD
Sbjct: 900  KKSWPPLDYEPAEAKEEPRKIVHQLIVDFFVRNMSSENLGVICNAHVVHADLSDYGAMDD 959

Query: 981  NCLKLAELAATAVDFPKTGKIVHMPASLKPKLYPDFMDKNDHHSYKSEKILGRLYRKIKD 802
             CLKLA+LAA AVDFPKTG  V++PAS KPKLYPDFM+K++H +YKSEKILGRLYRKIK 
Sbjct: 960  KCLKLAKLAAIAVDFPKTGVFVNLPASYKPKLYPDFMNKDEHITYKSEKILGRLYRKIKS 1019

Query: 801  ASDEDNSSELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGE 622
            ASDEDNSSELIS Y+DLP+D+  ++  A +YL EAWETKCSYDRQLNALLGQFRVDKEGE
Sbjct: 1020 ASDEDNSSELISAYEDLPYDQAFDISEAFDYLTEAWETKCSYDRQLNALLGQFRVDKEGE 1079

Query: 621  VVTGHLCSMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDL--LQLTDEEKNVRY 448
            VVTGH+ S+G +NSRKQGE+KERLKNAYYALNKKYRR+FE++G  L  L L+D+E+N  Y
Sbjct: 1080 VVTGHISSLGSYNSRKQGEVKERLKNAYYALNKKYRRSFEEIGGHLSQLSLSDDERNQIY 1139

Query: 447  EKKASAWYCVTYHPKWVEKSIAMREADGERVPPR 346
            E KA+AWY VTYHPKWV+KS+ M+EADGER+  R
Sbjct: 1140 ESKAAAWYQVTYHPKWVKKSVEMKEADGERLGVR 1173


>ref|XP_008778879.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-dependent RNA polymerase
            SHL2 [Phoenix dactylifera]
          Length = 1198

 Score = 1634 bits (4231), Expect = 0.0
 Identities = 799/1208 (66%), Positives = 976/1208 (80%), Gaps = 1/1208 (0%)
 Frame = -3

Query: 3846 MGSLGSSNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDS 3667
            MGSLG+     K+ +++QVS  GFD    +A+ L   LEH    +IWRCR+K+S TPP+S
Sbjct: 1    MGSLGADERDQKELVVSQVSFGGFDE-RVSAKDLTDFLEHEAG-LIWRCRVKNSWTPPES 58

Query: 3666 YPDFDISEDMKKKKQPARPSPSFTAPHAFLQFATPAGAQRVLDAAARCDLVLGSKPLIAR 3487
            YPD+D+ +    +++   P      PHAF+ FAT   A+R ++AA +C+LVL   PL A 
Sbjct: 59   YPDYDVLDVSDVRRKDDYPK---VVPHAFVHFATLDAAKRAINAAGKCELVLQGCPLRAN 115

Query: 3486 ASSDTSYRINRRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESNVNFLIDPFDNS 3307
            + +D+S+RI+RRR++DPF F D   EIG+L S   FL AWK    P+S V+FLIDPFD  
Sbjct: 116  SGTDSSFRISRRRTMDPFRFTDVGVEIGTLASRDEFLVAWK---GPKSGVDFLIDPFDGR 172

Query: 3306 CKLLFTGDVAFTVNGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLNLGAAPL 3127
            C++LF+ + AF     +E  V++C+FK+EFL RD+ E+K+  D     ++FQL   + P 
Sbjct: 173  CRILFSKETAFAFKDIKEMAVLKCDFKVEFLARDINEVKLFTDQYPPAMLFQL--ASTPW 230

Query: 3126 VYYRTADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAME 2947
            VYYRTADDDI  +  ++LLDDEDPWIRTTDFTP GAI RC  YRIS  PR+G  LK ++ 
Sbjct: 231  VYYRTADDDILVTAPFSLLDDEDPWIRTTDFTPGGAISRCCSYRISFSPRYGRILKESLA 290

Query: 2946 YMKERRIDGLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVNFANLFMVNALVHKGIFSQ 2767
            Y+KERRI   RP RP+VV +E +FG +  DPFF   +KEG++F+ +F+V+ALVHKGI +Q
Sbjct: 291  YLKERRIAEHRPKRPLVVLEEPDFGTLMPDPFFSVQHKEGISFSIMFLVDALVHKGIVNQ 350

Query: 2766 HRVTEEFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTAS 2587
            H+++EEFF LL  QS  +N+ ALRHI+AYK P+FDACRRLK+VQ+WLL   + +K    S
Sbjct: 351  HQLSEEFFALLRSQSDSMNETALRHIWAYKTPIFDACRRLKLVQDWLLKNPKFLKSSKLS 410

Query: 2586 ADNMEVRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNF 2407
             D+ EVRRLVITPTKAYCLPP +EL+NRVLR Y++++DRFLRVTFMDEGMQ+LN+NVLN+
Sbjct: 411  DDSSEVRRLVITPTKAYCLPPGVELSNRVLRNYKEVADRFLRVTFMDEGMQKLNNNVLNY 470

Query: 2406 YVAPIVREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDQSAWFFAED 2227
            YVAPIV+E+++NS  QKT +FRRV++I+  GF+LCGR+YSFLAFSSNQLRD+SAWFFAED
Sbjct: 471  YVAPIVKELTSNSFPQKTTVFRRVRSILIDGFHLCGRRYSFLAFSSNQLRDRSAWFFAED 530

Query: 2226 KHTSVHDITSWMGKFKDKNVAKYAARMGQCFSSTYATVEVPSYEVVPFLPDIKRNNYCFS 2047
             +TSV DI  WMGKF +KNVAK AARMGQCFSSTYATV+VP  +V P LPDI+R  Y FS
Sbjct: 531  SNTSVEDIRDWMGKFANKNVAKCAARMGQCFSSTYATVDVPPDQVNPLLPDIERKGYIFS 590

Query: 2046 DGIGKITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYKF 1867
            DGIGKITP+LAMEVA+KLQLTENPPSAYQIRYAG KGV+AVWPG+DDGIRLSLR SM KF
Sbjct: 591  DGIGKITPELAMEVAEKLQLTENPPSAYQIRYAGTKGVVAVWPGDDDGIRLSLRPSMNKF 650

Query: 1866 QSEHTMLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAF 1687
            +S HTMLEVVSWTRFQPGFLNRQIVTLLS+L VPD VFA MQDSM+ KL+QMLV+ DVAF
Sbjct: 651  ESSHTMLEVVSWTRFQPGFLNRQIVTLLSSLNVPDSVFASMQDSMIYKLNQMLVDTDVAF 710

Query: 1686 DVLTTSCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSLKARIFVPKGRWLM 1507
            DVLT+SCAEQGN AA+MLSAGF PQ EPHLKAMLSCIR +QL DL  KAR FVPKGRWLM
Sbjct: 711  DVLTSSCAEQGNTAAIMLSAGFKPQTEPHLKAMLSCIRSAQLGDLLAKARXFVPKGRWLM 770

Query: 1506 GCFDELGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVVLAKNPCLHPGD 1327
            GC DELGVLE GQCFIQ+S PSLENCF+KHGS+FSG K+N+QVIVGTV +AKNPCLHPGD
Sbjct: 771  GCLDELGVLEHGQCFIQSSIPSLENCFMKHGSRFSGIKKNRQVIVGTVAIAKNPCLHPGD 830

Query: 1326 VRILEAVDVPGLRHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSRRSWM 1147
            +RILEAVDVP L HLVDCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPP ++SW+
Sbjct: 831  IRILEAVDVPSLHHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPGKKSWI 890

Query: 1146 PMAYTPAVPKDEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKL 967
            PM YTPA PK EPR +  +DIIDFF+KN+ NENLGVICNAHVVHAD S+YGA+D+ CL+L
Sbjct: 891  PMDYTPAKPKLEPRGVTPRDIIDFFLKNMVNENLGVICNAHVVHADCSEYGALDEKCLQL 950

Query: 966  AELAATAVDFPKTGKIVHMPASLKPKLYPDFMDKNDHHSYKSEKILGRLYRKIKDASDED 787
            AELAATAVDFPKTGK+V MP +LKPK+YPDFM K+DH SY+S+K+LG LYR IKDA+D D
Sbjct: 951  AELAATAVDFPKTGKLVMMPPALKPKVYPDFMGKDDHMSYQSQKVLGILYRNIKDATDND 1010

Query: 786  NSSELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGH 607
             SSEL+   ++LP+D +L++ GAS+YL +AW  +CSYD QLNALL Q+RV  EGEVVTGH
Sbjct: 1011 VSSELLCTAEELPYDADLDIPGASDYLADAWXKQCSYDGQLNALLAQYRVRSEGEVVTGH 1070

Query: 606  LCSMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAW 427
            + S+ K+NSRKQGE+KERL+NAY AL+K++RR FE++G D  QLTD+EK + YE+KASAW
Sbjct: 1071 IWSLPKYNSRKQGELKERLRNAYSALHKEFRRIFENMGPDFQQLTDDEKCLSYEQKASAW 1130

Query: 426  YCVTYHPKWVEKSIAMREADGERVPPRLSFAWIPADYLVRIKIKSRD-GKVGTGKPIDSL 250
            Y VTY P+W++K   + EADG+ VP RLSFAWI ADYLVRIKI+S D G+    +PID+L
Sbjct: 1131 YQVTYQPRWIKKLSEIEEADGDAVPARLSFAWIAADYLVRIKIRSGDRGRFDNKRPIDTL 1190

Query: 249  ASYLYERM 226
            A YL ER+
Sbjct: 1191 ACYLSERI 1198


>ref|XP_010921974.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2 [Elaeis
            guineensis]
 ref|XP_019706451.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2 [Elaeis
            guineensis]
 ref|XP_019706452.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2 [Elaeis
            guineensis]
          Length = 1198

 Score = 1631 bits (4223), Expect = 0.0
 Identities = 795/1211 (65%), Positives = 978/1211 (80%), Gaps = 4/1211 (0%)
 Frame = -3

Query: 3846 MGSLGSSNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDS 3667
            MGSLG+     K+ +++QVS  GFD    +A+ L   +EH    +IWRCR+K+S TPP+S
Sbjct: 1    MGSLGAQERDQKELVVSQVSFGGFDE-RVSAKDLTDFMEHEAG-LIWRCRVKNSWTPPES 58

Query: 3666 YPDF---DISEDMKKKKQPARPSPSFTAPHAFLQFATPAGAQRVLDAAARCDLVLGSKPL 3496
            YP+F   D+S+ ++K   P         PHAF+ FATP  A+R ++AA +C+L+L   PL
Sbjct: 59   YPNFNVLDVSDVLRKDDHPK------VVPHAFVHFATPDAAKRAINAAGKCELILNGHPL 112

Query: 3495 IARASSDTSYRINRRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESNVNFLIDPF 3316
             A +  D+S+RINRRR+ DPF F D   EIG+L S   FL AWK    P+  V+FLIDPF
Sbjct: 113  RANSGIDSSFRINRRRTTDPFRFVDVGVEIGTLASRDEFLVAWK---GPKLGVDFLIDPF 169

Query: 3315 DNSCKLLFTGDVAFTVNGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLNLGA 3136
            D  C++LF+ + AF     +E  VI+C+FK+EFL+RD+ E+K+  D   HV++FQL+  +
Sbjct: 170  DGCCRILFSKETAFAFKDIKEMAVIKCDFKVEFLVRDINEVKLFTDRYPHVMLFQLS--S 227

Query: 3135 APLVYYRTADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKR 2956
             P VYYRTADDDIH +  ++LLDDEDPWIRTTDFTP GAI R + YR+S  PR+G  L++
Sbjct: 228  TPWVYYRTADDDIHVTASFSLLDDEDPWIRTTDFTPGGAISRSSSYRVSFSPRYGRILEK 287

Query: 2955 AMEYMKERRIDGLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVNFANLFMVNALVHKGI 2776
            ++ Y++ERRI    P RP+ V++E  FG +  DPFF   YKEG++F+ +F+V+ALVHKGI
Sbjct: 288  SLAYLRERRIAEHWPKRPLAVREEPEFGTLMPDPFFSVQYKEGISFSIMFLVDALVHKGI 347

Query: 2775 FSQHRVTEEFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIP 2596
             +QH+++EEFF LL  QS  VN++ALRHI+AYK P+FD  +RLK+VQ+WLL   +L+K  
Sbjct: 348  VNQHQLSEEFFALLRSQSDAVNEIALRHIWAYKTPIFDPRKRLKLVQDWLLKNPKLLKSS 407

Query: 2595 TASADNMEVRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNV 2416
                D+ EVRRLVITPTKAYCLPPE+EL+NRVLR Y+ ++DRFLRVTFMDEGMQ LN+NV
Sbjct: 408  KLLDDSTEVRRLVITPTKAYCLPPEVELSNRVLRNYKKVADRFLRVTFMDEGMQPLNNNV 467

Query: 2415 LNFYVAPIVREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDQSAWFF 2236
            LN+YVAPIV+E+++NS  QKT +FRRV+NI+  GF+LCGR+YSFLAFSSNQLRD+SAWFF
Sbjct: 468  LNYYVAPIVKELTSNSFPQKTTVFRRVRNILLDGFHLCGRRYSFLAFSSNQLRDRSAWFF 527

Query: 2235 AEDKHTSVHDITSWMGKFKDKNVAKYAARMGQCFSSTYATVEVPSYEVVPFLPDIKRNNY 2056
            AED +TSV  I +WMGKF +KNVAK AARMGQCFSSTYATV+VP  +  P LPDI+RN Y
Sbjct: 528  AEDSNTSVMAIRNWMGKFANKNVAKCAARMGQCFSSTYATVDVPLDQFNPLLPDIERNGY 587

Query: 2055 CFSDGIGKITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESM 1876
             FSDGIGKI P+LA+EVA+KLQLTENPPSAYQIRYAG+KGV+AVWP +DDG+RLSLR SM
Sbjct: 588  VFSDGIGKIIPELAIEVAEKLQLTENPPSAYQIRYAGFKGVVAVWPADDDGVRLSLRPSM 647

Query: 1875 YKFQSEHTMLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPD 1696
             KF+S HTMLEVVSWTRFQPGFLNRQIVTLLS+L V D VF  MQDSM+ KL+QMLV+ D
Sbjct: 648  NKFESSHTMLEVVSWTRFQPGFLNRQIVTLLSSLNVADSVFESMQDSMIYKLNQMLVDTD 707

Query: 1695 VAFDVLTTSCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSLKARIFVPKGR 1516
            VAFDVLT+SCAEQGN AA+MLSAGF PQ+EPHLKAMLSCIR +QL DL  KARIFVPKGR
Sbjct: 708  VAFDVLTSSCAEQGNTAAIMLSAGFKPQMEPHLKAMLSCIRSAQLGDLLAKARIFVPKGR 767

Query: 1515 WLMGCFDELGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVVLAKNPCLH 1336
            WLMGC DELGVLE GQCFIQ+S PSLENCF+KHGS+FS  K+N+QVIVGTV +AKNPCLH
Sbjct: 768  WLMGCLDELGVLEHGQCFIQSSIPSLENCFMKHGSRFSLLKKNRQVIVGTVAIAKNPCLH 827

Query: 1335 PGDVRILEAVDVPGLRHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSRR 1156
            PGD+RILEAVDVP L HLVDCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPS++
Sbjct: 828  PGDIRILEAVDVPSLHHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKK 887

Query: 1155 SWMPMAYTPAVPKDEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNC 976
            SW+PM YTPA PK +PR +  +DIIDFF+KN+ NENLGVICNAHVVHAD S+YGA+D+NC
Sbjct: 888  SWIPMDYTPAEPKLQPRAVTPRDIIDFFLKNMVNENLGVICNAHVVHADRSEYGALDENC 947

Query: 975  LKLAELAATAVDFPKTGKIVHMPASLKPKLYPDFMDKNDHHSYKSEKILGRLYRKIKDAS 796
            L+LAELAATAVDFPKTGK+V MP+ LKPK+YPDFM K+DH SYKS+K+LGRLYR IK A+
Sbjct: 948  LQLAELAATAVDFPKTGKLVTMPSGLKPKVYPDFMGKDDHMSYKSQKVLGRLYRNIKYAA 1007

Query: 795  DEDNSSELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVV 616
            D D S+EL    ++LP+D +L++ GAS YL +AW+ KCSYD QLNALL Q+RV  EGEVV
Sbjct: 1008 DNDVSTELPCTAEELPYDTDLDIPGASYYLADAWQNKCSYDGQLNALLAQYRVRSEGEVV 1067

Query: 615  TGHLCSMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKA 436
            TGH+ S+ K+NSRKQGE+KERLKNAY AL+K++RR FED+G D  QLTD+EK+V YE++A
Sbjct: 1068 TGHIWSLPKYNSRKQGELKERLKNAYSALHKEFRRIFEDMGPDFQQLTDDEKSVSYEQRA 1127

Query: 435  SAWYCVTYHPKWVEKSIAMREADGERVPPRLSFAWIPADYLVRIKIKSRD-GKVGTGKPI 259
            SAWY VTYHP+W+++S  ++E DG+ VP RLSFAW+ ADYLVRIKI S+D  K    +PI
Sbjct: 1128 SAWYQVTYHPRWIKRSGEIKEPDGDVVPARLSFAWVAADYLVRIKISSQDRQKFDNSRPI 1187

Query: 258  DSLASYLYERM 226
            D+LA YL ER+
Sbjct: 1188 DTLACYLSERI 1198


>ref|XP_020098906.1| probable RNA-dependent RNA polymerase SHL2 [Ananas comosus]
 ref|XP_020098907.1| probable RNA-dependent RNA polymerase SHL2 [Ananas comosus]
          Length = 1234

 Score = 1604 bits (4153), Expect = 0.0
 Identities = 798/1241 (64%), Positives = 977/1241 (78%), Gaps = 34/1241 (2%)
 Frame = -3

Query: 3846 MGSLGSSNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDS 3667
            MGS+GS   +    +++QVS  GFD    +A+ L   L+  +  +IWRCR+K+S TPPDS
Sbjct: 1    MGSVGSQKETAV--VVSQVSFGGFDEG-VSARELTDFLQQQVG-LIWRCRVKTSWTPPDS 56

Query: 3666 YPDF------DISEDMKKKKQPARPSPSFTA----------------------PHAFLQF 3571
            YPDF      D   D       A  S S ++                      PHAF+ F
Sbjct: 57   YPDFFSSSNADADADADAFSVAASSSSSSSSSSLTTSTTATTIRDKDDYPKVVPHAFVHF 116

Query: 3570 ATPAGAQRVLDAAARCDLVLGSKPLIARASSDTSYRINRRRSIDPFTFPDARFEIGSLTS 3391
            A+P  A+R ++AA RCDLVL  +PL A  ++++S+R +RRR+ DPF F D R +IGSL +
Sbjct: 117  ASPDAAKRAMNAAGRCDLVLRGRPLRAHCAAESSFRASRRRTTDPFKFSDVRLDIGSLVA 176

Query: 3390 PTHFLAAWKLDPKPESNVNFLIDPFDNSCKLLFTGDVAFTVNGTREFEVIRCNFKLEFLL 3211
               F A+W   P      +F++DPFD  CK+LF  + AF   GTR+   IRC+FK+EFL 
Sbjct: 177  RDDFCASWTC-PSGSGAADFVVDPFDGLCKILFARETAFAFKGTRDAATIRCDFKIEFLA 235

Query: 3210 RDVMELKIGADGMQHVLMFQLNLGAAPLVYYRTADDDIHNSVEWNLLDDEDPWIRTTDFT 3031
            RD+ ++++  D     ++ QL   +AP V YRTADDDI+ SV +NLLDDEDPWIRTTDFT
Sbjct: 236  RDIADVRLYTDRAPLAMLLQLT--SAPFVSYRTADDDIYTSVPFNLLDDEDPWIRTTDFT 293

Query: 3030 PSGAIGRCNCYRISMKPRFGPKLKRAMEYMKERRIDGLRPDRPIVVKDEANFG-EIATDP 2854
            P+GA+GRC+ Y+IS+ PRFG KL+RA++Y+++RRI   RP+RP+ V+ E +FG   ATD 
Sbjct: 294  PTGAVGRCSSYKISLSPRFGAKLERALDYLRKRRIPDYRPNRPLAVRPEPDFGFSPATDH 353

Query: 2853 FFCFHYKEGVNFANLFMVNALVHKGIFSQHRVTEEFFGLLNGQSVLVNDVALRHIYAYKK 2674
            FF  H+ EGV F  LF+VNALVHKGI +QH+++++FFGLL GQS +VN+ ALRHI++YK+
Sbjct: 354  FFSIHHAEGVGFPILFLVNALVHKGIVNQHQLSDQFFGLLRGQSGVVNETALRHIWSYKR 413

Query: 2673 PVFDACRRLKMVQEWLLGFSRLIKIPTASADNMEVRRLVITPTKAYCLPPEIELANRVLR 2494
            P+FDA RRLK+VQEWLL   +L++    + DN EVRRLVITPTKAYC+PP IEL+NRVLR
Sbjct: 414  PIFDAYRRLKLVQEWLLNNPKLLRSSKLADDNAEVRRLVITPTKAYCIPPAIELSNRVLR 473

Query: 2493 RYRDMSDRFLRVTFMDEGMQQLNSNVLNFYVAPIVREISNNSPSQKTAMFRRVKNIVNKG 2314
            RY++++DRFLRVTF DEGMQQLN++VLN+YVAPIVR+I++NS  QKT +F+RVK+I+  G
Sbjct: 474  RYKEVADRFLRVTFTDEGMQQLNNSVLNYYVAPIVRDITSNSYQQKTTVFKRVKSILMDG 533

Query: 2313 FNLCGRKYSFLAFSSNQLRDQSAWFFAEDKHTSVHDITSWMGKFKDKNVAKYAARMGQCF 2134
            F LCGR+YSFLAFSSNQLRD+SAWFFAED  T+V  IT WMG+F ++NVAK AARMGQCF
Sbjct: 534  FYLCGRRYSFLAFSSNQLRDRSAWFFAEDSKTTVAAITKWMGRFSNRNVAKCAARMGQCF 593

Query: 2133 SSTYATVEVPSYEVVPFLPDIKRNNYCFSDGIGKITPDLAMEVAKKLQLTENPPSAYQIR 1954
            SSTYATVEVP  EV P LPDI+ N Y FSDGIGKITPDLAMEVA+KL+LT+NPPSAYQIR
Sbjct: 594  SSTYATVEVPLREVNPVLPDIEGNGYIFSDGIGKITPDLAMEVAEKLKLTDNPPSAYQIR 653

Query: 1953 YAGYKGVIAVWPGNDDGIRLSLRESMYKFQSEHTMLEVVSWTRFQPGFLNRQIVTLLSAL 1774
            YAG KGV+AVWPG+ DGIRLSLR SM KF+S HT+LEVVSW+RFQPGFLNRQI+TLLS+L
Sbjct: 654  YAGCKGVVAVWPGDVDGIRLSLRPSMNKFESNHTVLEVVSWSRFQPGFLNRQIITLLSSL 713

Query: 1773 EVPDDVFARMQDSMVCKLDQMLVNPDVAFDVLTTSCAEQGNVAAMMLSAGFDPQLEPHLK 1594
             VPD VFARMQ+SM+CKL++MLV+ DVAF+VLTTSCAEQGN AAMMLSAGF PQ EPHLK
Sbjct: 714  SVPDSVFARMQESMICKLNEMLVDTDVAFEVLTTSCAEQGNTAAMMLSAGFKPQTEPHLK 773

Query: 1593 AMLSCIRLSQLKDLSLKARIFVPKGRWLMGCFDELGVLEQGQCFIQASSPSLENCFLKHG 1414
            AMLSCIR +QL DL  K RIFVPKGRWLMGC DELGVLE GQCFIQ SSPSL+NCF+KHG
Sbjct: 774  AMLSCIRSAQLGDLLAKTRIFVPKGRWLMGCLDELGVLEHGQCFIQMSSPSLQNCFIKHG 833

Query: 1413 SKFSGTKENKQVIVGTVVLAKNPCLHPGDVRILEAVDVPGLRHLVDCLVFPQKGDRPHSN 1234
            ++FSGTK N+QVIVG VV+AKNPCLHPGDVRILEAVDVPGL  LVDCLVFPQKGDRPH+N
Sbjct: 834  TRFSGTKMNRQVIVGAVVIAKNPCLHPGDVRILEAVDVPGLHQLVDCLVFPQKGDRPHAN 893

Query: 1233 EASGSDLDGDLYFVTWDENLIPPSRRSWMPMAYTPAVPKDEPRRIVHQDIIDFFVKNISN 1054
            EASGSDLDGDLYFVTWD +LIPP ++SW+PM YT A  K  PR +  QDIIDFF+KN+ N
Sbjct: 894  EASGSDLDGDLYFVTWDGDLIPPGKKSWVPMDYTAAEAKQLPRTVSPQDIIDFFLKNMVN 953

Query: 1053 ENLGVICNAHVVHADLSDYGAMDDNCLKLAELAATAVDFPKTGKIVHMPASLKPKLYPDF 874
            ENLGVICNAHVVHADLS+YGAMD+ CL+LAELAATAVDFPKTGK+V MP +L+PKLYPDF
Sbjct: 954  ENLGVICNAHVVHADLSEYGAMDEKCLQLAELAATAVDFPKTGKLVTMPPNLRPKLYPDF 1013

Query: 873  MDKNDHHSYKSEKILGRLYRKIKDASDEDNSSELISV----YQDLPFDENLEVHGASEYL 706
            M K+DH SYKSEKILG+LYR+I+DAS +D SS   +     ++D+ +D +LEV GAS+YL
Sbjct: 1014 MGKDDHMSYKSEKILGQLYREIRDASCDDPSSSSSAAQACSWEDVSYDTDLEVPGASDYL 1073

Query: 705  VEAWETKCSYDRQLNALLGQFRVDKEGEVVTGHLCSMGKHNSRKQGEIKERLKNAYYALN 526
             +AW  KC+YD QLNALLGQ++V  EGEVVTGH+ SM K+NSRKQGE+KERLKNAY AL 
Sbjct: 1074 FDAWNCKCAYDGQLNALLGQYKVCSEGEVVTGHIWSMPKNNSRKQGELKERLKNAYTALR 1133

Query: 525  KKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAWYCVTYHPKWVEKSIAMREADGERVPPR 346
            K++R  FE  G D  +L+D+EK+V YE+KASAWY VTYHPKW+ KS  MRE +GE VP R
Sbjct: 1134 KEFRNVFETAGPDFNELSDDEKSVWYEQKASAWYQVTYHPKWLRKSCEMRELEGEVVPTR 1193

Query: 345  LSFAWIPADYLVRIKIKSRD-GKVGTGKPIDSLASYLYERM 226
            LSFAWI ADYLVRIK++ +D  K+   +P+D+LA YL +R+
Sbjct: 1194 LSFAWIAADYLVRIKVRCQDKSKLNQQRPVDALAVYLSDRI 1234


>gb|OAY64204.1| putative RNA-dependent RNA polymerase SHL2 [Ananas comosus]
          Length = 1234

 Score = 1603 bits (4151), Expect = 0.0
 Identities = 798/1241 (64%), Positives = 977/1241 (78%), Gaps = 34/1241 (2%)
 Frame = -3

Query: 3846 MGSLGSSNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDS 3667
            MGS+GS   +    +++QVS  GFD    +A+ L   L+  +  +IWRCR+K+S TPPDS
Sbjct: 1    MGSVGSQKETAV--VVSQVSFGGFDEG-VSARELTDFLQQQVG-LIWRCRVKTSWTPPDS 56

Query: 3666 YPDF------DISEDMKKKKQPARPSPSFTA----------------------PHAFLQF 3571
            YPDF      D   D       A  S S ++                      PHAF+ F
Sbjct: 57   YPDFFSSSNADADADADAFSVAASSSSSSSSSSLTTSTTATTIRDKDDYPKVVPHAFVHF 116

Query: 3570 ATPAGAQRVLDAAARCDLVLGSKPLIARASSDTSYRINRRRSIDPFTFPDARFEIGSLTS 3391
            A+P  A+R ++AA RCDLVL  +PL A  ++++S+R +RRR+ DPF F D R +IGSL +
Sbjct: 117  ASPDAAKRAMNAAGRCDLVLRGRPLRAHCAAESSFRASRRRTTDPFKFSDVRLDIGSLVA 176

Query: 3390 PTHFLAAWKLDPKPESNVNFLIDPFDNSCKLLFTGDVAFTVNGTREFEVIRCNFKLEFLL 3211
               F A+W   P      +F++DPFD  CK+LF  + AF   GTR+   IRC+FK+EFL 
Sbjct: 177  RDDFCASWTC-PSGSGAADFVVDPFDGLCKILFARETAFAFKGTRDAATIRCDFKIEFLA 235

Query: 3210 RDVMELKIGADGMQHVLMFQLNLGAAPLVYYRTADDDIHNSVEWNLLDDEDPWIRTTDFT 3031
            RD+ ++++  D     ++ QL   +AP V YRTADDDI+ SV +NLLDDEDPWIRTTDFT
Sbjct: 236  RDIADVRLYTDRAPLAMLLQLT--SAPFVSYRTADDDIYTSVPFNLLDDEDPWIRTTDFT 293

Query: 3030 PSGAIGRCNCYRISMKPRFGPKLKRAMEYMKERRIDGLRPDRPIVVKDEANFG-EIATDP 2854
            P+GA+GRC+ Y+IS+ PRFG KL+RA++Y+++RRI   RP+RP+ V+ E +FG   ATD 
Sbjct: 294  PTGAVGRCSSYKISLSPRFGAKLERALDYLRKRRIPDYRPNRPLAVRPEPDFGFSPATDH 353

Query: 2853 FFCFHYKEGVNFANLFMVNALVHKGIFSQHRVTEEFFGLLNGQSVLVNDVALRHIYAYKK 2674
            FF  H+ EGV F  LF+VNALVHKGI +QH+++++FFGLL GQS +VN+ ALRHI++YK+
Sbjct: 354  FFSIHHAEGVGFPILFLVNALVHKGIVNQHQLSDQFFGLLRGQSGVVNETALRHIWSYKR 413

Query: 2673 PVFDACRRLKMVQEWLLGFSRLIKIPTASADNMEVRRLVITPTKAYCLPPEIELANRVLR 2494
            P+FDA RRLK+VQEWLL   +L++    + DN EVRRLVITPTKAYC+PP IEL+NRVLR
Sbjct: 414  PIFDAYRRLKLVQEWLLNNPKLLRSSKLADDNAEVRRLVITPTKAYCIPPAIELSNRVLR 473

Query: 2493 RYRDMSDRFLRVTFMDEGMQQLNSNVLNFYVAPIVREISNNSPSQKTAMFRRVKNIVNKG 2314
            RY++++DRFLRVTF DEGMQQLN++VLN+YVAPIVR+I++NS  QKT +F+RVK+I+  G
Sbjct: 474  RYKEVADRFLRVTFTDEGMQQLNNSVLNYYVAPIVRDITSNSYQQKTTVFKRVKSILMDG 533

Query: 2313 FNLCGRKYSFLAFSSNQLRDQSAWFFAEDKHTSVHDITSWMGKFKDKNVAKYAARMGQCF 2134
            F LCGR+YSFLAFSSNQLRD+SAWFFAED  T+V  IT WMG+F ++NVAK AARMGQCF
Sbjct: 534  FYLCGRRYSFLAFSSNQLRDRSAWFFAEDSKTTVAAITKWMGRFSNRNVAKCAARMGQCF 593

Query: 2133 SSTYATVEVPSYEVVPFLPDIKRNNYCFSDGIGKITPDLAMEVAKKLQLTENPPSAYQIR 1954
            SSTYATVEVP  EV P LPDI+ N Y FSDGIGKITPDLAMEVA+KL+LT+NPPSAYQIR
Sbjct: 594  SSTYATVEVPLREVNPVLPDIEGNGYIFSDGIGKITPDLAMEVAEKLKLTDNPPSAYQIR 653

Query: 1953 YAGYKGVIAVWPGNDDGIRLSLRESMYKFQSEHTMLEVVSWTRFQPGFLNRQIVTLLSAL 1774
            YAG KGV+AVWPG+ DGIRLSLR SM KF+S HT+LEVVSW+RFQPGFLNRQI+TLLS+L
Sbjct: 654  YAGCKGVVAVWPGDVDGIRLSLRLSMNKFESNHTVLEVVSWSRFQPGFLNRQIITLLSSL 713

Query: 1773 EVPDDVFARMQDSMVCKLDQMLVNPDVAFDVLTTSCAEQGNVAAMMLSAGFDPQLEPHLK 1594
             VPD VFARMQ+SM+CKL++MLV+ DVAF+VLTTSCAEQGN AAMMLSAGF PQ EPHLK
Sbjct: 714  SVPDSVFARMQESMICKLNEMLVDTDVAFEVLTTSCAEQGNTAAMMLSAGFKPQTEPHLK 773

Query: 1593 AMLSCIRLSQLKDLSLKARIFVPKGRWLMGCFDELGVLEQGQCFIQASSPSLENCFLKHG 1414
            AMLSCIR +QL DL  K RIFVPKGRWLMGC DELGVLE GQCFIQ SSPSL+NCF+KHG
Sbjct: 774  AMLSCIRSAQLGDLLAKTRIFVPKGRWLMGCLDELGVLEHGQCFIQMSSPSLQNCFIKHG 833

Query: 1413 SKFSGTKENKQVIVGTVVLAKNPCLHPGDVRILEAVDVPGLRHLVDCLVFPQKGDRPHSN 1234
            ++FSGTK N+QVIVG VV+AKNPCLHPGDVRILEAVDVPGL  LVDCLVFPQKGDRPH+N
Sbjct: 834  TRFSGTKMNRQVIVGAVVIAKNPCLHPGDVRILEAVDVPGLHQLVDCLVFPQKGDRPHAN 893

Query: 1233 EASGSDLDGDLYFVTWDENLIPPSRRSWMPMAYTPAVPKDEPRRIVHQDIIDFFVKNISN 1054
            EASGSDLDGDLYFVTWD +LIPP ++SW+PM YT A  K  PR +  QDIIDFF+KN+ N
Sbjct: 894  EASGSDLDGDLYFVTWDGDLIPPGKKSWVPMDYTAAEAKQLPRTVSPQDIIDFFLKNMVN 953

Query: 1053 ENLGVICNAHVVHADLSDYGAMDDNCLKLAELAATAVDFPKTGKIVHMPASLKPKLYPDF 874
            ENLGVICNAHVVHADLS+YGAMD+ CL+LAELAATAVDFPKTGK+V MP +L+PKLYPDF
Sbjct: 954  ENLGVICNAHVVHADLSEYGAMDEKCLQLAELAATAVDFPKTGKLVTMPPNLRPKLYPDF 1013

Query: 873  MDKNDHHSYKSEKILGRLYRKIKDASDEDNSSELISV----YQDLPFDENLEVHGASEYL 706
            M K+DH SYKSEKILG+LYR+I+DAS +D SS   +     ++D+ +D +LEV GAS+YL
Sbjct: 1014 MGKDDHMSYKSEKILGQLYREIRDASCDDPSSSSSAAQACSWEDVSYDTDLEVPGASDYL 1073

Query: 705  VEAWETKCSYDRQLNALLGQFRVDKEGEVVTGHLCSMGKHNSRKQGEIKERLKNAYYALN 526
             +AW  KC+YD QLNALLGQ++V  EGEVVTGH+ SM K+NSRKQGE+KERLKNAY AL 
Sbjct: 1074 FDAWNCKCAYDGQLNALLGQYKVCSEGEVVTGHIWSMPKNNSRKQGELKERLKNAYTALR 1133

Query: 525  KKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAWYCVTYHPKWVEKSIAMREADGERVPPR 346
            K++R  FE  G D  +L+D+EK+V YE+KASAWY VTYHPKW+ KS  MRE +GE VP R
Sbjct: 1134 KEFRNVFETAGPDFNELSDDEKSVWYEQKASAWYQVTYHPKWLRKSCEMRELEGEVVPTR 1193

Query: 345  LSFAWIPADYLVRIKIKSRD-GKVGTGKPIDSLASYLYERM 226
            LSFAWI ADYLVRIK++ +D  K+   +P+D+LA YL +R+
Sbjct: 1194 LSFAWIAADYLVRIKVRCQDKSKLNQQRPVDALAVYLSDRI 1234


>ref|XP_020108971.1| probable RNA-dependent RNA polymerase SHL2 [Ananas comosus]
          Length = 1232

 Score = 1584 bits (4101), Expect = 0.0
 Identities = 789/1239 (63%), Positives = 969/1239 (78%), Gaps = 32/1239 (2%)
 Frame = -3

Query: 3846 MGSLGSSNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDS 3667
            MGS+GS   +  + +++QV   GFD    +A+ L   L+  +  +IWRCR+K+S TPPDS
Sbjct: 1    MGSVGSQKET--EVVVSQVCFGGFDEG-VSARELTDFLQQQVG-LIWRCRVKTSWTPPDS 56

Query: 3666 YPDF---------DISEDMKKKKQPARPSPSFT-----------------APHAFLQFAT 3565
            YPDF         D S         A  S S T                  PHAF+ FA+
Sbjct: 57   YPDFFFSSSDDVDDASSSSSSSAAAAFSSSSPTIAPTTASVRDKDDYPKVVPHAFVHFAS 116

Query: 3564 PAGAQRVLDAAARCDLVLGSKPLIARASSDTSYRINRRRSIDPFTFPDARFEIGSLTSPT 3385
            P  A+R ++AA RCDLVLG +PL A  ++++S+R++RRR+ DPF F D R +IGSL +  
Sbjct: 117  PDAAKRAMNAAGRCDLVLGGRPLRAHCAAESSFRVSRRRTTDPFKFSDVRLDIGSLLARD 176

Query: 3384 HFLAAWKLDPKPESNVNFLIDPFDNSCKLLFTGDVAFTVNGTREFEVIRCNFKLEFLLRD 3205
             F A+W   P      +F++DPFD  CK+LF  + AF   GTR+   IRC+FK+EFL RD
Sbjct: 177  DFCASWTC-PSGSGAADFVVDPFDGLCKILFARETAFAFKGTRDAATIRCDFKIEFLARD 235

Query: 3204 VMELKIGADGMQHVLMFQLNLGAAPLVYYRTADDDIHNSVEWNLLDDEDPWIRTTDFTPS 3025
            + E+++  D     ++ QL   +AP + YRTADDDI+ SV +NLLDDEDPWIRTTDF+P+
Sbjct: 236  IAEVRLYTDRASLAMLLQLT--SAPYISYRTADDDIYTSVPFNLLDDEDPWIRTTDFSPT 293

Query: 3024 GAIGRCNCYRISMKPRFGPKLKRAMEYMKERRIDGLRPDRPIVVKDEANFG-EIATDPFF 2848
            GA+GRC+ Y+IS+ PRFG KL+RA++Y+++RRI   RP+R +VV+ E +FG   ATD FF
Sbjct: 294  GAVGRCSSYKISLSPRFGGKLERALDYLRKRRIPDYRPNRQLVVRPEPDFGFSPATDHFF 353

Query: 2847 CFHYKEGVNFANLFMVNALVHKGIFSQHRVTEEFFGLLNGQSVLVNDVALRHIYAYKKPV 2668
              H+ EGV F  LF+VNALVHKGI +QH+++++FFGLL GQ+ +VN+ ALRHI++YK+P+
Sbjct: 354  SIHHAEGVGFPILFLVNALVHKGIVNQHQLSDQFFGLLRGQNGVVNETALRHIWSYKRPI 413

Query: 2667 FDACRRLKMVQEWLLGFSRLIKIPTASADNMEVRRLVITPTKAYCLPPEIELANRVLRRY 2488
            FDA RRLK+VQEWLL   +L++    +    EVRRLVITPTKAYC+PP IEL+NRVLRRY
Sbjct: 414  FDAYRRLKLVQEWLLNNPKLLRSSKLADYYAEVRRLVITPTKAYCIPPAIELSNRVLRRY 473

Query: 2487 RDMSDRFLRVTFMDEGMQQLNSNVLNFYVAPIVREISNNSPSQKTAMFRRVKNIVNKGFN 2308
            ++++DRFLRVTF DEGMQQLN++VLN+YVAPIV+EI++NS  QKT +F+RVK+I+  GF 
Sbjct: 474  KEVADRFLRVTFTDEGMQQLNNSVLNYYVAPIVKEITSNSYQQKTTVFKRVKSILEDGFY 533

Query: 2307 LCGRKYSFLAFSSNQLRDQSAWFFAEDKHTSVHDITSWMGKFKDKNVAKYAARMGQCFSS 2128
            LCGRKYSFLAFSSNQLRD+SAWFFAED  T+V  IT WMG+F D+NVAK AAR+GQCFSS
Sbjct: 534  LCGRKYSFLAFSSNQLRDRSAWFFAEDSKTTVAAITKWMGRFSDRNVAKCAARIGQCFSS 593

Query: 2127 TYATVEVPSYEVVPFLPDIKRNNYCFSDGIGKITPDLAMEVAKKLQLTENPPSAYQIRYA 1948
            TYATVEVP  EV P LPDI+ N Y FSDGIGKITPDLAMEVA+KL+LT+NPPSAYQIRYA
Sbjct: 594  TYATVEVPLREVNPVLPDIEGNRYIFSDGIGKITPDLAMEVAEKLKLTDNPPSAYQIRYA 653

Query: 1947 GYKGVIAVWPGNDDGIRLSLRESMYKFQSEHTMLEVVSWTRFQPGFLNRQIVTLLSALEV 1768
            G KGV+AVWPG++ GIRLSLR SM KF+S HT+LEVVSW+RFQPGFLNRQI+TLLS+L V
Sbjct: 654  GCKGVVAVWPGDEIGIRLSLRPSMNKFESNHTVLEVVSWSRFQPGFLNRQIITLLSSLSV 713

Query: 1767 PDDVFARMQDSMVCKLDQMLVNPDVAFDVLTTSCAEQGNVAAMMLSAGFDPQLEPHLKAM 1588
            PD VFARMQDSM+CKL++MLV+ DVAF+VLTTSCAEQGN AAMMLSAGF PQ EPHLKAM
Sbjct: 714  PDSVFARMQDSMICKLNEMLVDTDVAFEVLTTSCAEQGNTAAMMLSAGFKPQTEPHLKAM 773

Query: 1587 LSCIRLSQLKDLSLKARIFVPKGRWLMGCFDELGVLEQGQCFIQASSPSLENCFLKHGSK 1408
            LSCIR +QL DL  K RIFVPKGRWLMGC DEL VLE GQCFIQ SSPSL+NCF+KHG++
Sbjct: 774  LSCIRSAQLGDLLDKTRIFVPKGRWLMGCLDELAVLEHGQCFIQTSSPSLQNCFIKHGTR 833

Query: 1407 FSGTKENKQVIVGTVVLAKNPCLHPGDVRILEAVDVPGLRHLVDCLVFPQKGDRPHSNEA 1228
            FS TK N+Q+IVG VV+AKNPCLHPGDVRILEAVDVP L  LVDCLVFPQKGDRPH+NEA
Sbjct: 834  FSSTKMNRQIIVGVVVIAKNPCLHPGDVRILEAVDVPDLHQLVDCLVFPQKGDRPHANEA 893

Query: 1227 SGSDLDGDLYFVTWDENLIPPSRRSWMPMAYTPAVPKDEPRRIVHQDIIDFFVKNISNEN 1048
            SGSDLDGDLYFVTWD++LIPP +RSW+PM Y  A  K  PR +  QDIIDFF+KN+ NEN
Sbjct: 894  SGSDLDGDLYFVTWDDDLIPPGKRSWVPMDYAAAEAKKLPRTVSPQDIIDFFLKNMVNEN 953

Query: 1047 LGVICNAHVVHADLSDYGAMDDNCLKLAELAATAVDFPKTGKIVHMPASLKPKLYPDFMD 868
            LGVICNAHVVHADLS+YGAMD+ CL+LAELA+TAVDFPKTG  V MP +L+PKLYPDFM 
Sbjct: 954  LGVICNAHVVHADLSEYGAMDEKCLQLAELASTAVDFPKTGNFVTMPPNLRPKLYPDFMG 1013

Query: 867  KNDHHSYKSEKILGRLYRKIKDASDEDNSSELISV----YQDLPFDENLEVHGASEYLVE 700
            K+DH SYKSEKILG+LYR+I+DAS +D SS   +     ++D+ +D +L+V GAS+YL +
Sbjct: 1014 KDDHMSYKSEKILGKLYREIRDASCDDPSSSSSAAQACSWEDVSYDMDLKVPGASDYLFD 1073

Query: 699  AWETKCSYDRQLNALLGQFRVDKEGEVVTGHLCSMGKHNSRKQGEIKERLKNAYYALNKK 520
            AW  KC+YD QLNALLGQ++V  EGEVVTGH+ SM K+NSRKQGE+KERLKNAY AL K+
Sbjct: 1074 AWNCKCAYDGQLNALLGQYKVFSEGEVVTGHIWSMPKNNSRKQGELKERLKNAYAALRKE 1133

Query: 519  YRRAFEDVGTDLLQLTDEEKNVRYEKKASAWYCVTYHPKWVEKSIAMREADGERVPPRLS 340
            +R  FE  G    +L+D+EK+V YE+KASAWY VTYHPKW+ KS  M+E +GE VP RLS
Sbjct: 1134 FRNVFETAGPHFDELSDDEKSVWYEQKASAWYQVTYHPKWLRKSCEMQEPEGEMVPARLS 1193

Query: 339  FAWIPADYLVRIKIKSRD-GKVGTGKPIDSLASYLYERM 226
            FAWI ADYLVRIKI+ +D  K+   +P+D LA YL ER+
Sbjct: 1194 FAWIAADYLVRIKIRCQDKSKLDQQRPVDVLAVYLSERI 1232


>gb|OAY62820.1| putative RNA-dependent RNA polymerase SHL2 [Ananas comosus]
          Length = 1232

 Score = 1578 bits (4087), Expect = 0.0
 Identities = 788/1239 (63%), Positives = 966/1239 (77%), Gaps = 32/1239 (2%)
 Frame = -3

Query: 3846 MGSLGSSNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDS 3667
            MGS+GS   +  + +++QV   GFD    +A+ L   L+  +  +IWRCR+K+S TPPDS
Sbjct: 1    MGSVGSQKET--EVVVSQVCFGGFDEG-VSARELTDFLQQQVG-LIWRCRVKTSWTPPDS 56

Query: 3666 YPDF---------DISEDMKKKKQPARPSPSFT-----------------APHAFLQFAT 3565
            YPDF         D S         A  S S T                  PHAF+ FA+
Sbjct: 57   YPDFFFSSSDDVDDASSSSSSSAAAAFSSSSPTIAPTTASVRDKDDYPKVVPHAFVHFAS 116

Query: 3564 PAGAQRVLDAAARCDLVLGSKPLIARASSDTSYRINRRRSIDPFTFPDARFEIGSLTSPT 3385
            P  A+R ++AA RCDLVLG +PL A  ++++S+R++RRR+ DPF F D R +IGSL +  
Sbjct: 117  PDAAKRAMNAAGRCDLVLGGRPLRAHCAAESSFRVSRRRTTDPFKFSDVRLDIGSLLARD 176

Query: 3384 HFLAAWKLDPKPESNVNFLIDPFDNSCKLLFTGDVAFTVNGTREFEVIRCNFKLEFLLRD 3205
             F A+W   P      +F++DPFD  CK+LF  + AF   GTR+   IRC+FK+EFL RD
Sbjct: 177  DFCASWTC-PSGSGAADFVVDPFDGLCKILFARETAFAFKGTRDAATIRCDFKIEFLARD 235

Query: 3204 VMELKIGADGMQHVLMFQLNLGAAPLVYYRTADDDIHNSVEWNLLDDEDPWIRTTDFTPS 3025
            + E+++  D     ++ QL   +AP + YRTADDDI+ SV +NLLDDEDPWIRTTDF+P+
Sbjct: 236  IAEVRLYTDRASLAMLLQLT--SAPYISYRTADDDIYTSVPFNLLDDEDPWIRTTDFSPT 293

Query: 3024 GAIGRCNCYRISMKPRFGPKLKRAMEYMKERRIDGLRPDRPIVVKDEANFG-EIATDPFF 2848
            GA+GR + Y+IS+ PRFG KL+RA++Y+++RRI   RP+R +VV+ E +FG   ATD FF
Sbjct: 294  GAVGRGSSYKISLSPRFGGKLERALDYLRKRRIPDYRPNRQLVVRPEPDFGFSPATDHFF 353

Query: 2847 CFHYKEGVNFANLFMVNALVHKGIFSQHRVTEEFFGLLNGQSVLVNDVALRHIYAYKKPV 2668
              H+ EGV F  LF+VNALVHKGI +QH+++++FFGLL GQ+ +VN+ ALRHI++YK+P+
Sbjct: 354  SIHHAEGVGFPILFLVNALVHKGIVNQHQLSDQFFGLLRGQNGVVNETALRHIWSYKRPI 413

Query: 2667 FDACRRLKMVQEWLLGFSRLIKIPTASADNMEVRRLVITPTKAYCLPPEIELANRVLRRY 2488
            FDA RRLK+VQEWLL   +L++    +    EVRRLVITPTKAYC+PP IEL+NRVLRRY
Sbjct: 414  FDAYRRLKLVQEWLLNNPKLLRSSKLADYYAEVRRLVITPTKAYCIPPAIELSNRVLRRY 473

Query: 2487 RDMSDRFLRVTFMDEGMQQLNSNVLNFYVAPIVREISNNSPSQKTAMFRRVKNIVNKGFN 2308
            ++++DRFLRVTF DEGMQQLN++VLN+YVAPIV+EI++NS  QKT +F+RVK+I+  GF 
Sbjct: 474  KEVADRFLRVTFTDEGMQQLNNSVLNYYVAPIVKEITSNSYQQKTTVFKRVKSILEDGFY 533

Query: 2307 LCGRKYSFLAFSSNQLRDQSAWFFAEDKHTSVHDITSWMGKFKDKNVAKYAARMGQCFSS 2128
            LCGRKYSFLAFSSNQLRD+SAWFFAED  T+V  IT WMG+F D+NVAK AAR+GQCFSS
Sbjct: 534  LCGRKYSFLAFSSNQLRDRSAWFFAEDSKTTVAAITKWMGRFSDRNVAKCAARIGQCFSS 593

Query: 2127 TYATVEVPSYEVVPFLPDIKRNNYCFSDGIGKITPDLAMEVAKKLQLTENPPSAYQIRYA 1948
            TYATVEVP  EV P LPDI+ N Y FSDGIGKITPDLAMEVA+KL+LT+NPPSAYQIRYA
Sbjct: 594  TYATVEVPLREVNPVLPDIEGNRYIFSDGIGKITPDLAMEVAEKLKLTDNPPSAYQIRYA 653

Query: 1947 GYKGVIAVWPGNDDGIRLSLRESMYKFQSEHTMLEVVSWTRFQPGFLNRQIVTLLSALEV 1768
            G KGV+AVWPG++ GIRLSLR SM KF+S HT+LEVVSW+RFQPGFLNRQI+TLLS+L V
Sbjct: 654  GCKGVVAVWPGDEIGIRLSLRPSMNKFESNHTVLEVVSWSRFQPGFLNRQIITLLSSLSV 713

Query: 1767 PDDVFARMQDSMVCKLDQMLVNPDVAFDVLTTSCAEQGNVAAMMLSAGFDPQLEPHLKAM 1588
            PD VFARMQDSM+CKL++MLV+ DVAF+VLTTSCAEQGN AAMMLSAGF PQ EPHLKAM
Sbjct: 714  PDSVFARMQDSMICKLNEMLVDTDVAFEVLTTSCAEQGNTAAMMLSAGFKPQTEPHLKAM 773

Query: 1587 LSCIRLSQLKDLSLKARIFVPKGRWLMGCFDELGVLEQGQCFIQASSPSLENCFLKHGSK 1408
            LSCIR +Q  DL  K RIFVPKGRWLMGC DEL VLE GQCFIQ SSPSL+NCF+KHG++
Sbjct: 774  LSCIRSAQFGDLLDKTRIFVPKGRWLMGCLDELAVLEHGQCFIQTSSPSLQNCFIKHGTR 833

Query: 1407 FSGTKENKQVIVGTVVLAKNPCLHPGDVRILEAVDVPGLRHLVDCLVFPQKGDRPHSNEA 1228
            FS TK N+Q+IVG VV+AKNPCLHPGDVRILEAVDVP L  LVDCLVFPQKGDRPH+NEA
Sbjct: 834  FSSTKMNRQIIVGVVVIAKNPCLHPGDVRILEAVDVPDLHQLVDCLVFPQKGDRPHANEA 893

Query: 1227 SGSDLDGDLYFVTWDENLIPPSRRSWMPMAYTPAVPKDEPRRIVHQDIIDFFVKNISNEN 1048
            SGSDLDGDLYFVTWD +LIPP +RSW+PM Y  A  K  PR +  QDIIDFF+KN+ NEN
Sbjct: 894  SGSDLDGDLYFVTWDNDLIPPGKRSWVPMDYAAAEAKKLPRTVSPQDIIDFFLKNMVNEN 953

Query: 1047 LGVICNAHVVHADLSDYGAMDDNCLKLAELAATAVDFPKTGKIVHMPASLKPKLYPDFMD 868
            LGVICNAHVVHADLS+YGAMD+ CL+LAELA+TAVDFPKTG  V MP +L+PKLYPDFM 
Sbjct: 954  LGVICNAHVVHADLSEYGAMDEKCLQLAELASTAVDFPKTGNFVTMPPNLRPKLYPDFMG 1013

Query: 867  KNDHHSYKSEKILGRLYRKIKDASDEDNSSELISV----YQDLPFDENLEVHGASEYLVE 700
            K+DH SYKSEKILG+LYR+I+DAS +D SS   +     ++D+ +D +LEV GAS+YL +
Sbjct: 1014 KDDHMSYKSEKILGKLYREIRDASCDDPSSSSSAAQACSWEDVSYDMDLEVPGASDYLFD 1073

Query: 699  AWETKCSYDRQLNALLGQFRVDKEGEVVTGHLCSMGKHNSRKQGEIKERLKNAYYALNKK 520
            AW  KC+YD QLNALLGQ++V  EGEVVTGH+ SM K+NSRKQGE+KERLKNAY AL K+
Sbjct: 1074 AWNCKCAYDGQLNALLGQYKVFSEGEVVTGHIWSMPKNNSRKQGELKERLKNAYAALRKE 1133

Query: 519  YRRAFEDVGTDLLQLTDEEKNVRYEKKASAWYCVTYHPKWVEKSIAMREADGERVPPRLS 340
            +R  FE  G    +L+D+EK+V YE+KASAWY VTYHPKW+ KS  M+E +GE VP RLS
Sbjct: 1134 FRNVFETAGPHFDELSDDEKSVWYEQKASAWYQVTYHPKWLRKSCEMQEPEGEMVPARLS 1193

Query: 339  FAWIPADYLVRIKIKSRD-GKVGTGKPIDSLASYLYERM 226
            FAWI ADYLVRIKI+ +D  K+   +P+D LA YL ER+
Sbjct: 1194 FAWIAADYLVRIKIRCQDKSKLDQQRPVDVLAVYLSERI 1232


>ref|XP_018678117.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-dependent RNA polymerase
            SHL2 [Musa acuminata subsp. malaccensis]
          Length = 1199

 Score = 1569 bits (4063), Expect = 0.0
 Identities = 778/1202 (64%), Positives = 954/1202 (79%), Gaps = 2/1202 (0%)
 Frame = -3

Query: 3825 NASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDSYPDFDIS 3646
            N   K+  ++QVS  GFDA   +A+ LA  LE+    +IWRCR+K+S TPP+SYP F  +
Sbjct: 7    NTEQKEMTVSQVSFGGFDA-KVSAKELADFLEYEAG-IIWRCRVKTSWTPPESYPVFKGT 64

Query: 3645 EDMKKKKQPARPSPSFTAPHAFLQFATPAGAQRVLDAAARCDLVLGSKPLIARASSDTSY 3466
            +D      P +       PHAF+ FA P   ++ +DAA +CDLVL  +PL A   +++S+
Sbjct: 65   DDAFDV--PRKDDYGRVVPHAFVHFARPDAVKKAMDAAGKCDLVLNGRPLRANVGTESSF 122

Query: 3465 RINRRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESNVNFLIDPFDNSCKLLFTG 3286
            R+NRRR+ DPF F +A  EIG+L S   FL +WK    P+S V+F+IDPFD+ CK+LF+ 
Sbjct: 123  RVNRRRTTDPFRFSNACVEIGNLVSRDEFLVSWK---GPDSAVDFVIDPFDDCCKILFSK 179

Query: 3285 DVAFTVNGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLNLGAAPLVYYRTAD 3106
            + AF   G RE  +I C+FK+EFLLRD+ E+++  D    V+ FQL   +AP VYYRTAD
Sbjct: 180  ETAFYFKGLREMTLIMCDFKVEFLLRDINEVRVHKDAAPFVMQFQLI--SAPYVYYRTAD 237

Query: 3105 DDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAMEYMKERRI 2926
            DDI+ SV +NLLDDEDPWIRTTD TPSGAIGRCN YRIS+ PRFGPK++R++ Y++E  +
Sbjct: 238  DDIYTSVPFNLLDDEDPWIRTTDITPSGAIGRCNSYRISLSPRFGPKMERSLAYLREHGV 297

Query: 2925 DGLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVNFANLFMVNALVHKGIFSQHRVTEEF 2746
               RP   +VV+DE  +G   +DPFFC   K+G+NFA +F+VNALVH+GI +QH+++EEF
Sbjct: 298  AENRPRCRLVVRDEPGYGAHMSDPFFCIQNKKGINFATMFLVNALVHRGIVNQHQLSEEF 357

Query: 2745 FGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTASADNMEVR 2566
            F LL  QS +VN  AL HI +YK P+FDA  RLK+VQEWLL   +L++    S D +EVR
Sbjct: 358  FSLLRCQSEMVNGTALMHILSYKHPIFDAPGRLKLVQEWLLRNPKLLRHSKFSDDIIEVR 417

Query: 2565 RLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNFYVAPIVR 2386
            +LVITPTKAYCLPPE+EL+NRVLR+Y++++DRFLRVTF DEGMQQLNSNVLN+YVAPIVR
Sbjct: 418  KLVITPTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFTDEGMQQLNSNVLNYYVAPIVR 477

Query: 2385 EISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDQSAWFFAEDKHT-SVH 2209
            +I++NS  QKT +F+RVK+I+  GF+L G+KYSFLAFSSNQLRD+SAWFFAE   + +V 
Sbjct: 478  DITSNSFPQKTTVFKRVKDILTNGFHLYGQKYSFLAFSSNQLRDRSAWFFAEVSGSITVA 537

Query: 2208 DITSWMGKFKDKNVAKYAARMGQCFSSTYATVEVPSYEVVPFLPDIKRNNYCFSDGIGKI 2029
             I +WMGKF +KNVAK AARMGQCFSSTYATV V   EV   L DIKRN Y FSDGIGKI
Sbjct: 538  TIRNWMGKFSNKNVAKCAARMGQCFSSTYATVNVTPNEVNSELEDIKRNGYVFSDGIGKI 597

Query: 2028 TPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYKFQSEHTM 1849
            TP+LA+EVA+KL LTE+PPSAYQIRYAG KGV+AVWPGNDDGI+LSLR SM KF+S HT+
Sbjct: 598  TPELALEVAQKLHLTEDPPSAYQIRYAGCKGVVAVWPGNDDGIKLSLRPSMNKFESNHTI 657

Query: 1848 LEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAFDVLTTS 1669
            LEVVSWTRFQPGFLNRQIVTLLS+L+VPD VF RMQD+M+ KL+Q+L + +VAF++LTTS
Sbjct: 658  LEVVSWTRFQPGFLNRQIVTLLSSLKVPDSVFERMQDTMILKLNQILHDTNVAFEILTTS 717

Query: 1668 CAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSLKARIFVPKGRWLMGCFDEL 1489
            CAEQGN AAMMLSAGF PQ EPHLKAMLSCIR +QL DL  K +IFVPKGR LMGC DEL
Sbjct: 718  CAEQGNTAAMMLSAGFRPQSEPHLKAMLSCIRSTQLGDLLAKTKIFVPKGRLLMGCLDEL 777

Query: 1488 GVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVVLAKNPCLHPGDVRILEA 1309
            GVLE GQCFIQAS+PSLENC  KHGS+FS ++ N+QVIVGTV + KNPCLHPGD+RILEA
Sbjct: 778  GVLEHGQCFIQASTPSLENCLSKHGSRFSASQNNRQVIVGTVAVGKNPCLHPGDIRILEA 837

Query: 1308 VDVPGLRHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSRRSWMPMAYTP 1129
            VDVP L HLVDCL+FPQ+GDRPH+NEASGSDLDGDLYFVTWDENL+PP ++SW+PM YTP
Sbjct: 838  VDVPELHHLVDCLIFPQRGDRPHTNEASGSDLDGDLYFVTWDENLLPPGKKSWVPMDYTP 897

Query: 1128 AVPKDEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKLAELAAT 949
            A  K  PR+I+ QDIIDF++KN+ NEN GVICNAHVVHAD S++GA+D+NCLKLAELAAT
Sbjct: 898  AEVKQFPRQILPQDIIDFYLKNMVNENHGVICNAHVVHADRSEHGALDENCLKLAELAAT 957

Query: 948  AVDFPKTGKIVHMPASLKPKLYPDFMDKNDHHSYKSEKILGRLYRKIKDASDEDNSSELI 769
            AVDFPKTGKIV MP +LKPK YPDFM K D  SYKSEKILG+LYRKIKDA+D++  SEL 
Sbjct: 958  AVDFPKTGKIVTMPPALKPKTYPDFMGKVDRLSYKSEKILGKLYRKIKDATDDELPSELP 1017

Query: 768  SVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGHLCSMGK 589
              ++DLP+D +LE+ G+ +YL +AW+ K  YDR LNALL Q+RV  EGEVVTGH+ S+ K
Sbjct: 1018 CTFEDLPYDTDLEIIGSLDYLADAWQNKVVYDRHLNALLAQYRVSSEGEVVTGHIWSLPK 1077

Query: 588  HNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAWYCVTYH 409
            +NSRKQGE+KERLKNAY +L K++R  F+ +  DLLQLTD+EK   YE KASAWY VTYH
Sbjct: 1078 YNSRKQGELKERLKNAYSSLRKQFRHIFKTMSPDLLQLTDDEKCFFYEMKASAWYQVTYH 1137

Query: 408  PKWVEKSIAMREADGERVPPRLSFAWIPADYLVRIKIKSRD-GKVGTGKPIDSLASYLYE 232
            P+WV+K   ++E DG+ VP RLSFAWI ADYLVRIK++ ++ G     KPIDS ASYL  
Sbjct: 1138 PRWVKKYNELKEPDGDGVPARLSFAWIAADYLVRIKVRCQERGTPDNQKPIDSFASYLSG 1197

Query: 231  RM 226
            R+
Sbjct: 1198 RV 1199


>gb|OVA07789.1| RNA recognition motif domain [Macleaya cordata]
          Length = 1200

 Score = 1542 bits (3993), Expect = 0.0
 Identities = 771/1214 (63%), Positives = 950/1214 (78%), Gaps = 7/1214 (0%)
 Frame = -3

Query: 3846 MGSLGSSNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDS 3667
            MGSLGS     K+ IITQVS+ GFD  + TA  L   LE+ +  +IWRCRLK+S TPPDS
Sbjct: 1    MGSLGSEK-DKKEMIITQVSLGGFDK-HVTATELTDFLENEIG-LIWRCRLKNSRTPPDS 57

Query: 3666 YPDFDISE--DMKKKKQPARPSPSFTAPHAFLQFATPAGAQRVLDAAARCDLVLGSKPLI 3493
            YP+FD+    D+++K    +       PHAF+ FA+P  A R+L+AA R  L+L    L 
Sbjct: 58   YPNFDVMNIMDIQRKADDEK-----VEPHAFVHFASPDSATRILNAAGRGKLILNGNLLK 112

Query: 3492 ARASSDTSYRIN-RRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESNVNFLIDPF 3316
                 ++S+ IN RRRS +PF F + R EIG+L S   F   WK    P S V+F+IDPF
Sbjct: 113  VNLGPESSFHINQRRRSKNPFKFSNVRVEIGTLVSRDEFFIGWK---GPLSGVDFVIDPF 169

Query: 3315 DNSCKLLFTGDVAFTVNGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLNLGA 3136
            D+SCK+LFT + AF++  T    V++C+FK+E  +R+++E+K   D    +++ QL   +
Sbjct: 170  DSSCKILFTKETAFSIKDTTNHAVMKCDFKVELFVREIIEVKKYKDTSSLIMVLQL--AS 227

Query: 3135 APLVYYRTADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKR 2956
            +P ++YRTADDDIH SV ++LLDDEDPWIRTTDFTP G IGRCNCYRIS+ PRFG K  +
Sbjct: 228  SPFLFYRTADDDIHVSVPFDLLDDEDPWIRTTDFTPGGVIGRCNCYRISVSPRFGSKFDK 287

Query: 2955 AMEYMKERRIDGLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVNFANLFMVNALVHKGI 2776
            AM Y+KE RI    P + + V++E +FG  ++D FFC  +KEG++F  LFMVNA+VHKGI
Sbjct: 288  AMSYLKEWRIPNDCPRQQLRVREEPDFGMPSSDSFFCIQFKEGISFELLFMVNAVVHKGI 347

Query: 2775 FSQHRVTEEFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIP 2596
            F+ H++++ FF LL  Q+  VN  AL HI +Y++PVFDA +RLK+VQEWLL    LIK  
Sbjct: 348  FNIHQLSDRFFELLRSQTKEVNVAALAHICSYRRPVFDASKRLKLVQEWLLRNPELIKSC 407

Query: 2595 TASADNMEVRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNV 2416
                DN+EVRRLVITPTKAYCLPP +EL+NRVLR+Y++++DRFLRVTFMDEG+QQLN NV
Sbjct: 408  KGHDDNVEVRRLVITPTKAYCLPPAVELSNRVLRQYKEVADRFLRVTFMDEGLQQLNYNV 467

Query: 2415 LNFYVAPIVREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDQSAWFF 2236
            L++YVAPIV++I+NNS  QKTA++RRVK I   GF LCGRKYSFLAFSSNQLRDQSAWFF
Sbjct: 468  LSYYVAPIVKDITNNSFPQKTAVYRRVKTIAKDGFYLCGRKYSFLAFSSNQLRDQSAWFF 527

Query: 2235 AEDKHTSVHDITSWMGKFKDKNVAKYAARMGQCFSSTYATVEVPSYEVVPFLPDIKRNNY 2056
            AE +   V +I SWMGKF D+NVAK AARMGQCFSSTYATVEVP+ ++ P LPDI+RN Y
Sbjct: 528  AEGEKIKVSNIKSWMGKFNDRNVAKCAARMGQCFSSTYATVEVPTNQINPGLPDIERNGY 587

Query: 2055 CFSDGIGKITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESM 1876
             FSDGIG +TPDLA EVA+KLQL  NPP AYQIR+AG KGVIA W G DDGIRLSLR SM
Sbjct: 588  VFSDGIGMLTPDLAKEVAEKLQLGANPPCAYQIRFAGCKGVIACWEGKDDGIRLSLRPSM 647

Query: 1875 YKFQSEHTMLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPD 1696
             KFQS H++LE+VSWTRFQPGFLNRQI+TLLS+L VPDDVF++MQDSMVCKLDQ+L N D
Sbjct: 648  IKFQSTHSILEIVSWTRFQPGFLNRQIITLLSSLGVPDDVFSKMQDSMVCKLDQILENTD 707

Query: 1695 VAFDVLTTSCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSLKARIFVPKGR 1516
            VAF+VLT+SCAEQGN AAMMLSAGF PQ EPHL+ ML  IR +QL+DL  KARIFVP GR
Sbjct: 708  VAFEVLTSSCAEQGNTAAMMLSAGFKPQTEPHLRGMLISIRAAQLRDLLAKARIFVPSGR 767

Query: 1515 WLMGCFDELGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVVLAKNPCLH 1336
            WLMGC DELGVLE GQCFIQ+S+PSLENCF +HG  FS TK N QVI GTVV+AKNPCLH
Sbjct: 768  WLMGCLDELGVLENGQCFIQSSTPSLENCFSRHGIGFSETKRNLQVIKGTVVIAKNPCLH 827

Query: 1335 PGDVRILEAVDVPGLRHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSRR 1156
            PGD+RILEAVD PGL HLVDCLVFPQKG+RPH+NEASGSDLDGDLYF+TWDE+LIPPS+R
Sbjct: 828  PGDIRILEAVDAPGLHHLVDCLVFPQKGERPHTNEASGSDLDGDLYFLTWDESLIPPSKR 887

Query: 1155 SWMPMAYTPAVPKDEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNC 976
            SW+PM YTPA  K  PR + H DI++FF K + NE LG ICNAHVVHAD S+YGAMD+ C
Sbjct: 888  SWIPMDYTPADVKKLPRSVTHADIVEFFTKYLVNEKLGAICNAHVVHADQSEYGAMDEKC 947

Query: 975  LKLAELAATAVDFPKTGKIVHMPASLKPKLYPDFMDKNDHHSYKSEKILGRLYRKIKDAS 796
            ++LAELAATAVDFPKTGK+V MP SLKPK+YPDFM K+D  SYKS KILG+LYRKIKDAS
Sbjct: 948  IQLAELAATAVDFPKTGKLVTMPQSLKPKVYPDFMGKDDFQSYKSNKILGKLYRKIKDAS 1007

Query: 795  DEDNS-SELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEV 619
            DE  S SE +   +D+P+D +LE+ G++++++++W  KC+YD ++ ALLGQF+V+ E EV
Sbjct: 1008 DEATSTSEPLCAPEDIPYDTDLEIPGSADFIIDSWNHKCAYDEKVIALLGQFKVNTEEEV 1067

Query: 618  VTGHLCSMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKK 439
            VTGH+ SM  +NSRKQGE+KE+LK+AY+AL K+++  FE +G D   LT  EKN  YE+K
Sbjct: 1068 VTGHVWSMPNYNSRKQGELKEKLKHAYHALKKEFKHIFEYLGEDSQNLTVGEKNSVYEQK 1127

Query: 438  ASAWYCVTYHPKWVEKSIAMREADG-ERVPPRLSFAWIPADYLVRIKIKSRDG--KVGTG 268
            ASAWY VTYHP+WV+KS+ +R+ DG +RV P LSFAW+PA+YLVRIKI+ R G   +   
Sbjct: 1128 ASAWYQVTYHPRWVKKSLELRDPDGDDRVTPMLSFAWVPAEYLVRIKIR-RQGIRNLDIS 1186

Query: 267  KPIDSLASYLYERM 226
            KPI+SLASYL +R+
Sbjct: 1187 KPINSLASYLIDRI 1200


>ref|XP_015885879.1| PREDICTED: RNA-dependent RNA polymerase 6 [Ziziphus jujuba]
 ref|XP_015885880.1| PREDICTED: RNA-dependent RNA polymerase 6 [Ziziphus jujuba]
 ref|XP_015885881.1| PREDICTED: RNA-dependent RNA polymerase 6 [Ziziphus jujuba]
 ref|XP_015885882.1| PREDICTED: RNA-dependent RNA polymerase 6 [Ziziphus jujuba]
 ref|XP_015885883.1| PREDICTED: RNA-dependent RNA polymerase 6 [Ziziphus jujuba]
          Length = 1197

 Score = 1508 bits (3904), Expect = 0.0
 Identities = 751/1208 (62%), Positives = 937/1208 (77%), Gaps = 7/1208 (0%)
 Frame = -3

Query: 3828 SNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDSYPDFDI 3649
            S  + K  ++TQVS+ GFD  +  A+ L+  LE  +  +++RCRLK+SSTPP+SYPD+ I
Sbjct: 3    SKENEKQMVVTQVSLGGFDR-HVRAKDLSDFLEDEIG-LVYRCRLKTSSTPPESYPDYTI 60

Query: 3648 SEDMKKKKQPARPSPSFTAPHAFLQFATPAGAQRVLDAAARCDLVLGSKPLIARASSDTS 3469
                 ++K   +       PHAF+ FA    A+ +LDAA RC+L+L  +PL      +  
Sbjct: 61   DTAAIERKDDYKK----VEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENP 116

Query: 3468 YRIN-RRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESNVNFLIDPFDNSCKLLF 3292
            YR+N RRR+  P    D   +IG+L +   F  AW+    P   V+FL+DPFD +CK  F
Sbjct: 117  YRLNQRRRTTTPIKLSDVVVDIGTLVTRDQFFIAWR---GPPYGVDFLVDPFDGTCKFCF 173

Query: 3291 TGDVAFTVNGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLNLGAAPLVYYRT 3112
            T D AF+  G+    VI+C+FK+EFL+RD+ E K   D    VL+ QLN  +AP ++YRT
Sbjct: 174  TRDTAFSFKGSLNHAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLN--SAPRIWYRT 231

Query: 3111 ADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAMEYMKER 2932
            ADDDI +SV +++LDD+DPWIRTTDFTPSGAIGR N YRIS+ PR G KLK+A+ Y++ER
Sbjct: 232  ADDDIDDSVPYDMLDDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRER 291

Query: 2931 RI--DGLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVNFANLFMVNALVHKGIFSQHRV 2758
            R+  D LR   P+ ++ E +F    +DPFFC HYKE ++F  +F+VNA++HKGIF+QH++
Sbjct: 292  RVHHDSLR--WPLRIQKEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQI 349

Query: 2757 TEEFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTASADN 2578
            ++ FF LL  Q   VN  AL+HI +YK+PVFDACRRLK+VQEWLL   +L K P    D 
Sbjct: 350  SDGFFNLLRNQMKEVNVAALKHISSYKRPVFDACRRLKVVQEWLLRDPKLFKKPKRLDDI 409

Query: 2577 MEVRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNFYVA 2398
             EVRRLVITPT+AYCLPPE+EL+NRVLR Y++++DRFLRVTFMDEGMQ +NSNVL ++VA
Sbjct: 410  AEVRRLVITPTRAYCLPPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVA 469

Query: 2397 PIVREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDQSAWFFAEDKHT 2218
             IVREI++NS  QKT +F+R+K+I+  GF LCGRKYSFLAFSSNQLRD+SAWFFAEDK+ 
Sbjct: 470  SIVREITSNSFPQKTKVFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNI 529

Query: 2217 SVHDITSWMGKFKDKNVAKYAARMGQCFSSTYATVEVPSYEVVPFLPDIKRNNYCFSDGI 2038
            +V ++ SWMG+F ++NVAK AARMG CFSSTYA+VEVPS +V    PDIKRN Y FSDGI
Sbjct: 530  NVFEVKSWMGRFTNRNVAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGI 589

Query: 2037 GKITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVW-PGNDDGIRLSLRESMYKFQS 1861
            GKITPDLA+EVA+KL+L  NPP AYQIRYAG+KGV+A W P +DDG RLSLR SM KFQS
Sbjct: 590  GKITPDLALEVAQKLKLERNPPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQS 649

Query: 1860 EHTMLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAFDV 1681
             HT+LE+ SWTRFQPGFLNRQIVTLLSAL V D++F  MQ++M+ KL+QML++ D+AFDV
Sbjct: 650  NHTILEICSWTRFQPGFLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDV 709

Query: 1680 LTTSCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSLKARIFVPKGRWLMGC 1501
            LT SCAEQGNVAA+MLSAGF PQ EPHL+ ML+CIR +QL  L  KARIFVP GRWLMGC
Sbjct: 710  LTASCAEQGNVAAIMLSAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGC 769

Query: 1500 FDELGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVVLAKNPCLHPGDVR 1321
             DELGVLEQGQCFIQ S+PSLENCF KHGS+F+   +N +VI G VV+AKNPCLHPGDVR
Sbjct: 770  LDELGVLEQGQCFIQVSNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVR 829

Query: 1320 ILEAVDVPGLRHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSRRSWMPM 1141
            ILEAVDVP L HL DCLVFPQKG+RPH+NEASGSDLDGDLYFVTWDENLIPPS++SW+PM
Sbjct: 830  ILEAVDVPDLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPM 889

Query: 1140 AYTPAVPKDEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKLAE 961
             Y  A  K   R +  +DII+FF KN+ NENLG ICNAHVVHADLS++GA+D+ CLKLA+
Sbjct: 890  QYDAAETKQLTRPVTQEDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLAD 949

Query: 960  LAATAVDFPKTGKIVHMPASLKPKLYPDFMDKNDHHSYKSEKILGRLYRKIKDASDED-- 787
            LAATAVDFPKTGKIV MP +LKPKLYPDFM K+++ SYKS KILG+LYRKIKDA DED  
Sbjct: 950  LAATAVDFPKTGKIVTMPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAYDEDVT 1009

Query: 786  NSSELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGH 607
             SSE+  +  D+P+D +LEV GAS+++V+AWE KCSYD QLN LLGQ++V++E EVVTGH
Sbjct: 1010 ASSEINFLPSDIPYDIDLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGH 1069

Query: 606  LCSMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAW 427
            + SM K++SRKQGE+KERLK++Y AL K++R+ FE +     +L+D+EKN+ YE+KASAW
Sbjct: 1070 IWSMPKYSSRKQGELKERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAW 1129

Query: 426  YCVTYHPKWVEKSIAMREADGERVPPRLSFAWIPADYLVRIKIKSRD-GKVGTGKPIDSL 250
            Y VTYHP+WV+KS+ ++E DG R    LSFAWI ADYL RIKI+ R  G V   KPI++L
Sbjct: 1130 YQVTYHPEWVKKSLDLQEPDGSRYAVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINAL 1189

Query: 249  ASYLYERM 226
              YL +RM
Sbjct: 1190 GKYLSDRM 1197


>ref|XP_010254390.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Nelumbo nucifera]
 ref|XP_010254391.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Nelumbo nucifera]
 ref|XP_010254392.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Nelumbo nucifera]
 ref|XP_010254393.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Nelumbo nucifera]
          Length = 1193

 Score = 1506 bits (3898), Expect = 0.0
 Identities = 749/1210 (61%), Positives = 930/1210 (76%), Gaps = 3/1210 (0%)
 Frame = -3

Query: 3846 MGSLGSSNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDS 3667
            MGS G+ N    D II+QVS  GFD  N TA  L   LE  +   IWRCRLK+SSTPP+S
Sbjct: 1    MGSEGTKN----DMIISQVSFGGFDN-NVTASELTDFLEKEIG-TIWRCRLKTSSTPPES 54

Query: 3666 YPDFDISEDMKKKKQPARPSPSFTAPHAFLQFATPAGAQRVLDAAARCDLVLGSKPLIAR 3487
            YPD+D+++    +K           PHAF+ F +P  A   LDAA RCDLVL   PL   
Sbjct: 55   YPDYDVTDMDAIQKTDGYDK---VKPHAFVHFLSPEAATAALDAAGRCDLVLNRHPLKVN 111

Query: 3486 ASSDTSYRIN-RRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESNVNFLIDPFDN 3310
                + + +N RRR IDPF  PD+  +IGSL     F+  WK        V+F++DPFD 
Sbjct: 112  LGPQSPFLLNQRRRKIDPFKIPDSCIKIGSLVGQDEFVVCWKAP-----QVDFIVDPFDR 166

Query: 3309 SCKLLFTGDVAFTVNGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLNLGAAP 3130
            +CK+LFT + AF+   T  + VI+CNFKLEF + D+  +K        V++  L+L ++P
Sbjct: 167  TCKILFTKETAFSFKDTMAYVVIKCNFKLEFFVSDISYIKQYTGRSSLVIL--LHLRSSP 224

Query: 3129 LVYYRTADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAM 2950
             +YYRTADDDI++SV +++LDDEDPWIRTTDFTPS  IGRCN YRIS+ PRFGP+L + M
Sbjct: 225  CIYYRTADDDIYDSVPFDMLDDEDPWIRTTDFTPSRVIGRCNSYRISISPRFGPRLNKVM 284

Query: 2949 EYMKERRIDGLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVNFANLFMVNALVHKGIFS 2770
             Y+++ RI    P  P+ ++DE NFG + ++ FFC  +KEG++F  +FM+NA++HKGI +
Sbjct: 285  NYLRKHRIPDESPRMPLRIRDEPNFGMLMSEFFFCIDHKEGMSFETIFMLNAVIHKGIIN 344

Query: 2769 QHRVTEEFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTA 2590
            QH++++EFF LL  QS  VN  AL++IY+Y++PV +A   LK  Q  LL   +LIKI   
Sbjct: 345  QHQLSDEFFELLRSQSTDVNVTALQNIYSYRQPVLNAYTSLKDAQRCLLDNPKLIKISKG 404

Query: 2589 SADNMEVRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLN 2410
            S D +E+R+LVITPTKAYCLPPE+EL+NRVLR+Y+ +++RFLRV+F DE MQQL+SN LN
Sbjct: 405  SDDFVEMRKLVITPTKAYCLPPEVELSNRVLRKYKHVANRFLRVSFKDERMQQLSSNALN 464

Query: 2409 FYVAPIVREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDQSAWFFAE 2230
            +YVAPIVR+I++N   QKT +F RVK I++ GF LCGRKYSFLAFSSNQLRD+SAWFFAE
Sbjct: 465  YYVAPIVRDITSNPFPQKTTVFNRVKTILSNGFFLCGRKYSFLAFSSNQLRDRSAWFFAE 524

Query: 2229 DKHTSVHDITSWMGKFKDKNVAKYAARMGQCFSSTYATVEVPSYEVVPFLPDIKRNNYCF 2050
            DK+  V ++  WMG+F ++NVAK AARMG CFSSTYATVEVP  EV   LPDI+RN Y F
Sbjct: 525  DKNIKVIEVKKWMGRFTNRNVAKCAARMGLCFSSTYATVEVPLKEVNLELPDIERNGYVF 584

Query: 2049 SDGIGKITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYK 1870
            SDGIG +TPDL+MEVA+KLQLT NPP AYQIRYAG KGVI  WPG +DGIRLSLR SM K
Sbjct: 585  SDGIGMLTPDLSMEVAEKLQLTANPPCAYQIRYAGCKGVIVCWPGKEDGIRLSLRPSMNK 644

Query: 1869 FQSEHTMLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVA 1690
            F+S HT+LEV SWTRFQP +LNRQI+TLLSAL VPDDVF+RMQDSMV KL+QM+ N DVA
Sbjct: 645  FESRHTILEVCSWTRFQPSYLNRQIITLLSALCVPDDVFSRMQDSMVSKLNQMIENTDVA 704

Query: 1689 FDVLTTSCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSLKARIFVPKGRWL 1510
            FDV+T+SCAEQGN AA+MLSAGF PQ+EPHLK MLSCIR +QL+DL  K+RIFVP GRWL
Sbjct: 705  FDVVTSSCAEQGNTAAIMLSAGFKPQMEPHLKGMLSCIRAAQLRDLLEKSRIFVPSGRWL 764

Query: 1509 MGCFDELGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVVLAKNPCLHPG 1330
            MGC DEL VLE+GQCFIQ S PSLENCF KHGS+FS  K+N QV+ G V +AKNPCLHPG
Sbjct: 765  MGCLDELAVLEEGQCFIQVSKPSLENCFSKHGSRFSEVKKNTQVVKGIVAIAKNPCLHPG 824

Query: 1329 DVRILEAVDVPGLRHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSRRSW 1150
            D+RILEA+DVP L HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDE+LIPPS++S 
Sbjct: 825  DIRILEAIDVPSLHHLIDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEHLIPPSKQSL 884

Query: 1149 MPMAYTPAVPKDEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLK 970
            +PM Y+PA  K  PR + H+D+IDFF+K++ NE LGVICNAHVVHADLS+YGA+D+ C++
Sbjct: 885  VPMDYSPAEVKKLPRDVNHRDLIDFFMKSMVNEKLGVICNAHVVHADLSEYGALDEKCIQ 944

Query: 969  LAELAATAVDFPKTGKIVHMPASLKPKLYPDFMDKNDHHSYKSEKILGRLYRKIKDASDE 790
            LAELAATAVDFPKTGK+V +P  LKPK YPDFM K +  SYKS KILG+LYRKIKD SDE
Sbjct: 945  LAELAATAVDFPKTGKVVTVPQELKPKRYPDFMGKEEFQSYKSNKILGKLYRKIKDFSDE 1004

Query: 789  D-NSSELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVT 613
            D   SE+    +D+P+D +LEV G+S++L +AW  KC +D QL  LLGQ++V++E EVVT
Sbjct: 1005 DVEESEITFAAEDIPYDVHLEVLGSSDHLADAWNLKCLHDAQLTTLLGQYKVNREEEVVT 1064

Query: 612  GHLCSMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKAS 433
            GH+ SM K+NS KQGE+KERLKNAY AL K++R+AFE +  + LQLTD+EKN  YE+KAS
Sbjct: 1065 GHIWSMPKYNSNKQGELKERLKNAYNALKKEFRQAFEKI-DETLQLTDDEKNTIYEQKAS 1123

Query: 432  AWYCVTYHPKWVEKSIAMREADGERVPPRLSFAWIPADYLVRIKIKSRD-GKVGTGKPID 256
            AWY VTYHP+W+ K++ +RE + E  P  LSFAWIPADYLVRIKIK RD   V   KPI+
Sbjct: 1124 AWYQVTYHPRWIMKTLKLREHEDESNPAMLSFAWIPADYLVRIKIKHRDMENVDARKPIN 1183

Query: 255  SLASYLYERM 226
            +LA+YL +R+
Sbjct: 1184 ALANYLADRI 1193


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
 gb|PNT33711.1| hypothetical protein POPTR_006G253500v3 [Populus trichocarpa]
          Length = 1198

 Score = 1500 bits (3884), Expect = 0.0
 Identities = 744/1206 (61%), Positives = 929/1206 (77%), Gaps = 5/1206 (0%)
 Frame = -3

Query: 3828 SNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDSYPDFDI 3649
            +  S K+ ++TQVS+ GFD  + TA+ L + LE  +  ++WRCRLK+S TPP+SYP+F+I
Sbjct: 3    TEGSAKETVVTQVSLGGFDI-HVTAKDLLEYLEREIG-LVWRCRLKTSWTPPESYPNFEI 60

Query: 3648 SEDMKKKKQPARPSPSFTAPHAFLQFATPAGAQRVLDAAARCDLVLGSKPLIARASSDTS 3469
            ++  K  +           PHAF+ FA P  A   +DAA RC+L L +K L A    +  
Sbjct: 61   TDITKITRTEDYRR---VEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENP 117

Query: 3468 YRIN-RRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESNVNFLIDPFDNSCKLLF 3292
            + +N RRR   PF       EIG+L S   F   W+    P + V+FL+DPFD +C+  F
Sbjct: 118  FTLNQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWR---GPPTGVDFLVDPFDGTCRFCF 174

Query: 3291 TGDVAFTVNGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLNLGAAPLVYYRT 3112
            + + AF+   T E  VI+C+FK+EFL+RD+ E+K   +    VL+ QL   +AP V+YRT
Sbjct: 175  SRNTAFSFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQL--ASAPRVWYRT 232

Query: 3111 ADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAMEYMKER 2932
            ADDDI  SV ++LLDD+DPWIRTTDFT SGAIGRC+ YR+S+ PR GPKL++A++++KER
Sbjct: 233  ADDDIEVSVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKER 292

Query: 2931 RIDGLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVNFANLFMVNALVHKGIFSQHRVTE 2752
            R+      RPI ++DE +FG   TDPFFC H+KEG+ F  LF+VNA++HKGIF+QH+++ 
Sbjct: 293  RVQEEYLRRPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSN 352

Query: 2751 EFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTASADNME 2572
            +FF LL  Q   VN  AL+HIY Y++PVFDA ++LK+ QEWLL   +  K      D  E
Sbjct: 353  DFFDLLRNQPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAE 412

Query: 2571 VRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNFYVAPI 2392
            +RRLVITPTKAYCLPPE+EL+NRVLR+Y+D++DRFLRVTFMDEG+Q +NSN LN++ API
Sbjct: 413  IRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPI 472

Query: 2391 VREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDQSAWFFAEDKHTSV 2212
            VR I++ S  QKT +F+RV++I+ +GF LCGR+YSFLAFSSNQLRD+SAWFFAED++ +V
Sbjct: 473  VRAITSYSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINV 532

Query: 2211 HDITSWMGKFKDKNVAKYAARMGQCFSSTYATVEVPSYEVVPFLPDIKRNNYCFSDGIGK 2032
              I SWMGKF +KN+AK AARMGQCFSSTYAT+EVP  EV   LPDIKRN Y FSDGIG 
Sbjct: 533  MAIKSWMGKFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGM 592

Query: 2031 ITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYKFQSEHT 1852
            ITPDLA EVA+KL+   +PP AYQIRYAG KGV+A WP   DGIRLSLR SM KFQS HT
Sbjct: 593  ITPDLAREVAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHT 652

Query: 1851 MLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAFDVLTT 1672
            +LE+ SWTRFQPGFLNRQI+TLLSAL VPD VF +MQ+ MV KL+QMLV+ DVAFDVLT 
Sbjct: 653  ILEICSWTRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTA 712

Query: 1671 SCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSLKARIFVPKGRWLMGCFDE 1492
            SCAEQGNVAA+MLSAGF PQ EPHL+ ML+C+R +QL  L  KARIFVP GRWLMGC DE
Sbjct: 713  SCAEQGNVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDE 772

Query: 1491 LGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVVLAKNPCLHPGDVRILE 1312
            LGVLEQGQCFIQ S+  LENCF+KHGSKFS TK+N QV+ GTVV+AKNPCLHPGD+RILE
Sbjct: 773  LGVLEQGQCFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILE 832

Query: 1311 AVDVPGLRHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSRRSWMPMAYT 1132
            AVD PGL HL DCLVFPQKG+RPH+NEASGSDLDGDLYFVTWDENLIPPS+RSW+PM Y 
Sbjct: 833  AVDAPGLHHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYD 892

Query: 1131 PAVPKDEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKLAELAA 952
             A  K   R + HQDI++FF KN++NENLG ICNAHVV ADLS+YGA+D+ CL LAELAA
Sbjct: 893  AAEAKQLTRPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAA 952

Query: 951  TAVDFPKTGKIVHMPASLKPKLYPDFMDKNDHHSYKSEKILGRLYRKIKDASDEDN---S 781
            TAVDFPKTGKIV MP+ LKPK+YPDFM K +H SYKS+KILGRLYR+IKDA D+D+   S
Sbjct: 953  TAVDFPKTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAAS 1012

Query: 780  SELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGHLC 601
            SEL  V  D+P+D +LEV GA++++ +AW+ KCSYD QLN LL Q++V +E EVVTGH+ 
Sbjct: 1013 SELNFVRGDIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVW 1072

Query: 600  SMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAWYC 421
            SM K +SRKQG++KERLK++Y  L +++R+ FE +  D  QL D+EKN+ YE+KASAWY 
Sbjct: 1073 SMPKGSSRKQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQ 1132

Query: 420  VTYHPKWVEKSIAMREADGERVPPRLSFAWIPADYLVRIKIK-SRDGKVGTGKPIDSLAS 244
            VTYHP W++KS+ ++++DG  +   LSFAWI ADYL RIKI+ SR G V + KP++SLA 
Sbjct: 1133 VTYHPHWIQKSLELQDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAK 1192

Query: 243  YLYERM 226
            YL +RM
Sbjct: 1193 YLADRM 1198


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
 gb|PNS92354.1| hypothetical protein POPTR_018G028100v3 [Populus trichocarpa]
          Length = 1200

 Score = 1496 bits (3874), Expect = 0.0
 Identities = 745/1208 (61%), Positives = 930/1208 (76%), Gaps = 7/1208 (0%)
 Frame = -3

Query: 3828 SNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDSYPDFDI 3649
            +  S K+ ++TQVSV GFD  + TA+ L + L+  +  ++WRCRLK+S TPP+SYP+F+I
Sbjct: 3    AEGSAKETVVTQVSVGGFDI-HVTAKDLLEYLDRAIG-LVWRCRLKTSWTPPESYPNFEI 60

Query: 3648 SEDMKKKKQPARPSPSFTAPHAFLQFATPAGAQRVLDAAARCDLVLGSKPLIARASSDTS 3469
            ++  K ++           PHAF+ FA P  A   ++A+ RC+L L +K L         
Sbjct: 61   TDITKIERTEDYRR---VVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNP 117

Query: 3468 YRIN-RRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESNVNFLIDPFDNSCKLLF 3292
            + +N RRR+  PF   D  FEIG+L S   F   W+    P S V+FL+DPFD +CK  F
Sbjct: 118  FTLNQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWR---GPPSGVDFLVDPFDGTCKFCF 174

Query: 3291 TGDVAFTVNGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLNLGAAPLVYYRT 3112
            + + AF++  T E  VI+C+FK+EFL+RD+ E+    +    VL+ QL   +AP V+YRT
Sbjct: 175  SRNTAFSLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQL--ASAPWVWYRT 232

Query: 3111 ADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAMEYMKER 2932
            ADDDI   V ++LLDD+DPWIRTTDFT SGAIGRC+ YR+S+ PR G KL++A++Y+KER
Sbjct: 233  ADDDIEAWVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKER 292

Query: 2931 RIDGLRPD---RPIVVKDEANFGEIATDPFFCFHYKEGVNFANLFMVNALVHKGIFSQHR 2761
            R+  L+ +   R I + DE +FG   +DPFFC H+KEG+ F  LF+VNA++HKGIF+QH+
Sbjct: 293  RVQVLQEENHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQ 352

Query: 2760 VTEEFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTASAD 2581
            ++ +FF LL  Q   VN  AL+HI  Y++PVF+A RRLK VQEWLL    L K P    D
Sbjct: 353  LSNDFFDLLRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGD 412

Query: 2580 NMEVRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNFYV 2401
             +E+RRLVITPTKAYCLPPE+EL+NRVLR+Y+D++DRFLRVTFMDEG+Q++NSNVLN+YV
Sbjct: 413  VVEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYV 472

Query: 2400 APIVREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDQSAWFFAEDKH 2221
            APIVR+I++NS  QKT +F+RV++I+ +GF LCGR+YSFLAFS+NQLRDQSAWFF+E+++
Sbjct: 473  APIVRDITSNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERN 532

Query: 2220 TSVHDITSWMGKFKDKNVAKYAARMGQCFSSTYATVEVPSYEVVPFLPDIKRNNYCFSDG 2041
             SV D+ SWMGKF ++N+AK AARMGQCFSSTYAT+EVP  EV   LPDI+RN Y FSDG
Sbjct: 533  ISVLDVKSWMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDG 592

Query: 2040 IGKITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYKFQS 1861
            IG ITPDLA EVA+KL+L  +PP AYQIRYAG KGV+A WPG  DG+RLSLR SM KFQS
Sbjct: 593  IGIITPDLAREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQS 652

Query: 1860 EHTMLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAFDV 1681
             HT LE+ SWTRFQPGFLNRQI+TLLS L VPD VF +MQ++MV KL+QM VN DVAFDV
Sbjct: 653  NHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDV 712

Query: 1680 LTTSCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSLKARIFVPKGRWLMGC 1501
            LT SCA+QGNVAA+MLSAGF P  EPHL+ ML+C+R +QL DL  K RIFVP GRWLMGC
Sbjct: 713  LTASCADQGNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGC 772

Query: 1500 FDELGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVVLAKNPCLHPGDVR 1321
             DELG+LEQGQCFIQ S+ SLE CF+KHG+KFS  ++N QVI GTVV+AKNPCLHPGDVR
Sbjct: 773  LDELGMLEQGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVR 832

Query: 1320 ILEAVDVPGLRHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSRRSWMPM 1141
            +LEAVDVPGL HL DCLVFPQKG+RPH+NEASGSDLDGDLYFVTWDENLIPPS+RSW+PM
Sbjct: 833  VLEAVDVPGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPM 892

Query: 1140 AYTPAVPKDEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKLAE 961
             Y  A  K   R + HQDII+FF KN+ N+NLG ICNAHVVHADLS+YGA D NCL LAE
Sbjct: 893  QYDAAEAKLLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAE 952

Query: 960  LAATAVDFPKTGKIVHMPASLKPKLYPDFMDKNDHHSYKSEKILGRLYRKIKDASDED-- 787
            LAATAVDFPKTGK+V MP  LKPK+YPDFM K ++ SYKSEKILGRLYR+IKDA DED  
Sbjct: 953  LAATAVDFPKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVA 1012

Query: 786  NSSELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGH 607
             SSEL  V  D+P+D +LEV GAS+Y+ +AW+ KCSYD QLN LL Q++V +E EVVTGH
Sbjct: 1013 ASSELNLVPGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGH 1072

Query: 606  LCSMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAW 427
            + SM K++SRKQGE+K+RLK++Y +L K++R+ FE +  +  QL D EKN  YE+KASAW
Sbjct: 1073 IWSMPKYSSRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAW 1132

Query: 426  YCVTYHPKWVEKSIAMREADGERVPPRLSFAWIPADYLVRIKIKSRD-GKVGTGKPIDSL 250
            Y V YHP WV+KS+ +++ DG      LSFAWI ADYL RIKI+ R+ G V + KP++SL
Sbjct: 1133 YQVVYHPHWVKKSLELQDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSL 1192

Query: 249  ASYLYERM 226
            A YL +RM
Sbjct: 1193 AKYLADRM 1200


>ref|XP_011039698.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Populus euphratica]
          Length = 1195

 Score = 1495 bits (3870), Expect = 0.0
 Identities = 745/1206 (61%), Positives = 930/1206 (77%), Gaps = 5/1206 (0%)
 Frame = -3

Query: 3828 SNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDSYPDFDI 3649
            +  S K+ ++TQVS+ GFD  + TA+ L + LE  +  ++WRCRLK+S TPP+SYP+F+I
Sbjct: 3    TEGSAKETVVTQVSIGGFDI-HVTAKDLLEYLEREIG-LVWRCRLKTSWTPPESYPNFEI 60

Query: 3648 SEDMKKKKQPARPSPSFTAPHAFLQFATPAGAQRVLDAAARCDLVLGSKPLIARASSDTS 3469
            ++  K  +           PHAF+ FA P  A   +DAA RC+L L +K L A    +  
Sbjct: 61   ADLTKITRTEDYRR---VEPHAFVHFALPESATWAIDAADRCELFLNNKGLKASLGPENP 117

Query: 3468 YRIN-RRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESNVNFLIDPFDNSCKLLF 3292
            + +N RRR   PF   D   EIG+L S   F   W+    P + V+FL+DPFD +C+  F
Sbjct: 118  FTLNQRRRKTTPFKLSDVDVEIGTLVSRDEFFVGWR---GPPTGVDFLVDPFDGTCRFCF 174

Query: 3291 TGDVAFTVNGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLNLGAAPLVYYRT 3112
            + + AF+   T E  VI+C+FK+EFL+RD+ E+K   +    VL+ QL   +AP V+YRT
Sbjct: 175  SRNTAFSFKSTAEHAVIKCDFKVEFLVRDINEIKQYKETSCLVLLLQL--ASAPWVWYRT 232

Query: 3111 ADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAMEYMKER 2932
            ADDDI  SV ++LLDD+DPWIRTTDFT SGAIGRC+ YR+S+ PR GPKL++A++++KER
Sbjct: 233  ADDDIEVSVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKER 292

Query: 2931 RIDGLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVNFANLFMVNALVHKGIFSQHRVTE 2752
            R+      RPI ++DE +FG   TDPFFC H+KEG+ F  LF+VNA++HKGIF+QH+++ 
Sbjct: 293  RVQEEYLRRPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSN 352

Query: 2751 EFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTASADNME 2572
            +FF LL  Q   VN  AL+HIY Y++PVFDA ++LK+ QEWLL   +L K      D  E
Sbjct: 353  DFFDLLRNQPTEVNVAALKHIYPYRRPVFDAYKKLKVTQEWLLKNPKLFKNQKKLDDIAE 412

Query: 2571 VRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNFYVAPI 2392
            +RRL+ITPTKAYCLPPE+EL+NRVLR+Y+D++DRFLRVTFMDEG+Q +NSN LN++ API
Sbjct: 413  IRRLIITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGVQTMNSNALNYFAAPI 472

Query: 2391 VREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDQSAWFFAEDKHTSV 2212
            VR I++ S  QKT +F+RV++I+ +GF LCGR+YSFLAFSSNQLRD+SAWFFAED++ +V
Sbjct: 473  VRAITSYSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINV 532

Query: 2211 HDITSWMGKFKDKNVAKYAARMGQCFSSTYATVEVPSYEVVPFLPDIKRNNYCFSDGIGK 2032
              I SWMGKF +KN+AK AARMGQCFSSTYAT+EVP  EV   LPDIKRN Y FSDGIG 
Sbjct: 533  MAIKSWMGKFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGM 592

Query: 2031 ITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYKFQSEHT 1852
            ITPDLA EVA+KL+   +PPSAYQIRYAG KGV+A WP   DGIRLSLR SM KFQS HT
Sbjct: 593  ITPDLAREVAEKLKFDFDPPSAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHT 652

Query: 1851 MLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAFDVLTT 1672
            +LE+ SWTRFQPGFLNRQI+TLLSAL VPD VF +MQ+ MV KL+QMLV+ DVAFDVLT 
Sbjct: 653  ILEICSWTRFQPGFLNRQIITLLSALNVPDAVFWKMQEIMVSKLNQMLVDSDVAFDVLTA 712

Query: 1671 SCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSLKARIFVPKGRWLMGCFDE 1492
            SCAE GNVAA+MLSAGF PQ EPHL+ ML+C+R +QL  L  KARIFVP GRWLMGC DE
Sbjct: 713  SCAELGNVAAIMLSAGFKPQKEPHLRGMLNCVRAAQLWGLREKARIFVPSGRWLMGCLDE 772

Query: 1491 LGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVVLAKNPCLHPGDVRILE 1312
            L VLEQGQCFIQ S+  LENCF+KHGSKFS TK N QV+ GTVV+AKNPCLHPGD+RILE
Sbjct: 773  LAVLEQGQCFIQVSNSYLENCFVKHGSKFSETKRNLQVVKGTVVIAKNPCLHPGDIRILE 832

Query: 1311 AVDVPGLRHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSRRSWMPMAYT 1132
            AVD PGL HL DCLVFPQKG+RPH+NEASGSDLDGDLYFVTWDENLIPPS+RSW+PM Y 
Sbjct: 833  AVDDPGLHHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYD 892

Query: 1131 PAVPKDEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKLAELAA 952
             A  K   R + HQDII+FF KN++NENLG ICNAHVV ADLS+YGA+D+ CL LAELAA
Sbjct: 893  AAEAKQLTRPVNHQDIIEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAA 952

Query: 951  TAVDFPKTGKIVHMPASLKPKLYPDFMDKNDHHSYKSEKILGRLYRKIKDASDEDN---S 781
            TAVDFPKTGKIV MP+ LKPK+YPDFM K +H SYKS+KILGRLYR+IKDA D+D+   S
Sbjct: 953  TAVDFPKTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAAS 1012

Query: 780  SELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGHLC 601
            S+L  V  D+P+D +LEV GA++Y+ +AW+ KCSYD QLN LL Q++V +E EVVTGH+ 
Sbjct: 1013 SDLNFVPGDVPYDLDLEVLGATDYISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVW 1072

Query: 600  SMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAWYC 421
            SM K +SR+QG++KERLK++Y  L +++R+ FE +  D  QL D+EKN+ YE+KASAWY 
Sbjct: 1073 SMPKGSSRQQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQ 1132

Query: 420  VTYHPKWVEKSIAMREADGERVPPRLSFAWIPADYLVRIKIK-SRDGKVGTGKPIDSLAS 244
            VTYHP+W++KS+ ++++DG  +   LSFAWI ADYL RIKI+ SR G V + KPI+SLA 
Sbjct: 1133 VTYHPRWIQKSLELQDSDGAAM---LSFAWIAADYLARIKIRHSRIGNVDSAKPINSLAK 1189

Query: 243  YLYERM 226
            YL +RM
Sbjct: 1190 YLADRM 1195


>gb|APR63701.1| SILENCING DEFECTIVE family protein 1 [Populus tomentosa]
          Length = 1199

 Score = 1494 bits (3867), Expect = 0.0
 Identities = 744/1207 (61%), Positives = 928/1207 (76%), Gaps = 6/1207 (0%)
 Frame = -3

Query: 3828 SNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDSYPDFDI 3649
            +  S K+ ++TQVS+ GFD  + TA+ L + LE  +  ++WRCRLK+S TPP+SYP+F+I
Sbjct: 3    TEGSAKETVVTQVSLGGFDI-HVTAKDLLEYLEREIG-LVWRCRLKTSWTPPESYPNFEI 60

Query: 3648 SEDMKKKKQPARPSPSFTAPHAFLQFATPAGAQRVLDAAARCDLVLGSKPLIARASSDTS 3469
            ++  K  +           PHAF+ FA P  A   +DAA RC+L L +K L A    +  
Sbjct: 61   TDITKITRTEDYRR---VEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENP 117

Query: 3468 YRIN-RRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESNVNFLIDPFDNSCKLLF 3292
            + +N RRR   PF       EIG+L S   F   W+    P + V+FL+DPFD +C+  F
Sbjct: 118  FTLNQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWR---GPPTGVDFLVDPFDGTCRFCF 174

Query: 3291 TGDVAFTVNGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLNLGAAPLVYYRT 3112
            + + AF+   T E  VI+C+FK+EFL+RD+ E+K   +    VL+ QL   +AP V+YRT
Sbjct: 175  SRNTAFSFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQL--ASAPRVWYRT 232

Query: 3111 ADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAMEYMKER 2932
            ADDDI  SV ++LLDD+DPWIRTTDFT SGAIGRC+ YR+S+ PR GPKL++A++++KER
Sbjct: 233  ADDDIEVSVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKER 292

Query: 2931 RIDGLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVNFANLFMVNALVHKGIFSQHRVTE 2752
            R+      RPI ++DE +FG   TDPFFC H+KEG+ F  LF+VNA++HKGIF+QH+++ 
Sbjct: 293  RVQEEYLRRPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSN 352

Query: 2751 EFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTASADNME 2572
            +FF LL  Q   VN  AL+HIY Y++PVFDA ++LK+ QEWLL   +  K      D  E
Sbjct: 353  DFFDLLRNQPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAE 412

Query: 2571 VRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNFYVAPI 2392
            +RRLVITPTKAYCLPPE+EL+NRVLR+Y+D++DRFLRVTFMDEG+Q +NSN LN++ API
Sbjct: 413  IRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPI 472

Query: 2391 VREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDQSAWFFAEDKHTSV 2212
            VR I++ S  QKT +F+RV++I+ +GF LCGR+YSFLAFSSNQLRD+SAWFFAED++ +V
Sbjct: 473  VRAITSYSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINV 532

Query: 2211 HDITSWMGKFKDKNVAKYAARMGQCFSSTYATVEVPSYEVVPFLPDIKRNNYCFSDGIGK 2032
              I SWMGKF +KN+AK AARMGQCFSSTYAT+EVP  EV   LPDIKRN Y FSDGIG 
Sbjct: 533  MAIKSWMGKFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGM 592

Query: 2031 ITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYKFQSEHT 1852
            ITPDLA EVA+KL+   +PP AYQIRYAG KGV+A WP   DGIRLSLR SM KFQS HT
Sbjct: 593  ITPDLAREVAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHT 652

Query: 1851 MLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAFDVLTT 1672
            +LE+ SWTRFQPGFLNRQI+TLLSAL VPD VF +MQ+ MV KL+QMLV+ DVAFDVLT 
Sbjct: 653  ILEICSWTRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTA 712

Query: 1671 SCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSLKARIFVPKGRWLMGCFDE 1492
            SCAEQGNVAA+MLSAGF PQ EPHL+ ML+C+R +QL  L  KARIFVP GRWLMGC DE
Sbjct: 713  SCAEQGNVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDE 772

Query: 1491 LGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVVLAKNPCLHPGDVRILE 1312
            LGVLEQGQCFIQ S+  LENCF+KHGSKFS TK+N QV+ GTVV+AKNPCLHPGD+RILE
Sbjct: 773  LGVLEQGQCFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILE 832

Query: 1311 AVDVPGLRHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSRRSWMPMAYT 1132
            AVD PGL HL DCLVFPQKG+RPH+NEASGSDLDGDLYFVTWDENLIPPS+RSW+PM Y 
Sbjct: 833  AVDAPGLHHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYD 892

Query: 1131 PAVPKDEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKLAELAA 952
             A  K   R + HQDI++FF KN++NENLG ICNAHVV ADLS+YGA+D+ CL LAELAA
Sbjct: 893  AAEAKQLTRPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAA 952

Query: 951  TAVDFPKTGKIVHMPASLKPKLYPDFMDKNDHHSYKSEKILGRLYRKIKDASDEDN---S 781
            TAVDFPKTGKIV MP+ LKPK+YPDFM K +H SYKS+KILGRLYR+IKDA D+D+   S
Sbjct: 953  TAVDFPKTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAAS 1012

Query: 780  SELISV-YQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGHL 604
            SE   V   D+P+D +LEV GA++Y+ +AW+ KCSYD QLN LL Q++V +E EVVTGH+
Sbjct: 1013 SERNFVPAADIPYDLDLEVLGATDYISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHV 1072

Query: 603  CSMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAWY 424
             SM K +SRKQG++KERLK++Y  L +++R+ FE +  DL QL D+ KN+ YE+KASAWY
Sbjct: 1073 WSMPKGSSRKQGDLKERLKHSYNCLKREFRQVFEKMDLDLGQLDDDIKNMLYERKASAWY 1132

Query: 423  CVTYHPKWVEKSIAMREADGERVPPRLSFAWIPADYLVRIKIK-SRDGKVGTGKPIDSLA 247
             VTYHP W++KS+ ++++DG  +   LSFAWI ADYL RIKI+ SR G V + KP++SLA
Sbjct: 1133 QVTYHPHWIQKSLELQDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLA 1192

Query: 246  SYLYERM 226
             YL +RM
Sbjct: 1193 KYLADRM 1199


>ref|XP_011026450.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Populus euphratica]
          Length = 1200

 Score = 1487 bits (3849), Expect = 0.0
 Identities = 741/1208 (61%), Positives = 930/1208 (76%), Gaps = 7/1208 (0%)
 Frame = -3

Query: 3828 SNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDSYPDFDI 3649
            +  S K+ ++TQVSV GF   + TA+ L++ L+  +  ++WRCRLK+S TPP+SYP+F+I
Sbjct: 3    AEGSAKETVVTQVSVGGF-GIHVTAKDLSEYLDRAIG-LVWRCRLKTSWTPPESYPNFEI 60

Query: 3648 SEDMKKKKQPARPSPSFTAPHAFLQFATPAGAQRVLDAAARCDLVLGSKPLIARASSDTS 3469
            ++  K ++           PHAF+ FA P  A   ++A+ RC+L L  K L         
Sbjct: 61   TDITKIERTEDYRR---VVPHAFVHFALPQSATWAMNASERCELFLNDKALKVSLGPKNP 117

Query: 3468 YRINR-RRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESNVNFLIDPFDNSCKLLF 3292
            + +N+ RR+  PF   D  FEIGSL S   F   W+    P S V+FL+DPFD +C+  F
Sbjct: 118  FTLNQQRRTTTPFKLSDVGFEIGSLVSHDEFFVGWR---GPPSGVDFLVDPFDGTCRFCF 174

Query: 3291 TGDVAFTVNGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLNLGAAPLVYYRT 3112
            + + AF++  T E  VI+C FK+EFL+RD+ E+    +    VL+ QL   +AP V+YRT
Sbjct: 175  SRNTAFSLKSTSEHAVIKCAFKVEFLVRDINEIIQYTETSCLVLLLQL--ASAPWVWYRT 232

Query: 3111 ADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAMEYMKER 2932
            ADDDI   V ++LLDD+DPWIRTTDFT SGAIGRC+ YR+S+ PR G KL++A++Y+KER
Sbjct: 233  ADDDIEAWVPFDLLDDDDPWIRTTDFTGSGAIGRCHSYRVSIPPRHGSKLRKAVKYLKER 292

Query: 2931 RIDGLRPD---RPIVVKDEANFGEIATDPFFCFHYKEGVNFANLFMVNALVHKGIFSQHR 2761
            R++ L+ +   R I + DE +FG   +DPFFC H+KEG+ F  LF+VNA++HKGIF+QH+
Sbjct: 293  RVEVLQEENHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQ 352

Query: 2760 VTEEFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTASAD 2581
            ++ +FF LL  Q   VN  AL+HI  Y++PVF+A +RLK VQEWLL    L K P    D
Sbjct: 353  LSNDFFDLLRNQHTEVNVSALKHICTYRRPVFNAYKRLKAVQEWLLKNPNLFKNPKQLGD 412

Query: 2580 NMEVRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNFYV 2401
             +E+RRLVITPTKAYCLPPE+EL+NRVLR+Y+D++DRFLRVTFMDEG+Q++NSNVLN+YV
Sbjct: 413  IVEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYV 472

Query: 2400 APIVREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDQSAWFFAEDKH 2221
            APIVR+I++NS  QKT +F+RV++I+ +GF LCGR+YSFLAFS+NQLRDQSAWFFAE+++
Sbjct: 473  APIVRDITSNSFHQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFAEERN 532

Query: 2220 TSVHDITSWMGKFKDKNVAKYAARMGQCFSSTYATVEVPSYEVVPFLPDIKRNNYCFSDG 2041
             SV DI SWMGKF ++N+AK AARMGQCFSSTYAT+EVP  EV   LPDI+RN Y FSDG
Sbjct: 533  VSVLDIKSWMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNFDLPDIERNGYVFSDG 592

Query: 2040 IGKITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYKFQS 1861
            IG ITPDLA EVA+KL+L  +PP AYQIRYAG KGV+A WPG  DG+ LSLR SM KFQS
Sbjct: 593  IGIITPDLAREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVHLSLRPSMNKFQS 652

Query: 1860 EHTMLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAFDV 1681
             HT LE+ SWTRFQPGFLNRQI+TLLS L VPD VF +MQ++MV KL+QM VN DVAFDV
Sbjct: 653  NHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDV 712

Query: 1680 LTTSCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSLKARIFVPKGRWLMGC 1501
            LT SCA+QGNVAA+MLSAGF PQ EPHL+ ML+C+R +QL  L  KARIFVP GRWLMGC
Sbjct: 713  LTASCADQGNVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGC 772

Query: 1500 FDELGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVVLAKNPCLHPGDVR 1321
             DELG+LEQGQCFIQ S+ SLE CF+KHG+KFS  K+N QV+ GTVV+AKNPCLHPGDVR
Sbjct: 773  LDELGMLEQGQCFIQVSNSSLEKCFIKHGAKFSEAKKNLQVVKGTVVIAKNPCLHPGDVR 832

Query: 1320 ILEAVDVPGLRHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSRRSWMPM 1141
            +LEAVDVPGL HL DCLVFPQKG+RPH+NEASGSDLDGDLYFVTWDENLIPPS+RSW+PM
Sbjct: 833  VLEAVDVPGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPM 892

Query: 1140 AYTPAVPKDEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKLAE 961
             Y  A  K   R + HQDII+FF KN+ NENLG ICNAHVVHADLS++GAMD+ CL LAE
Sbjct: 893  QYDAAEAKLLARPVNHQDIIEFFAKNMVNENLGAICNAHVVHADLSEHGAMDEKCLTLAE 952

Query: 960  LAATAVDFPKTGKIVHMPASLKPKLYPDFMDKNDHHSYKSEKILGRLYRKIKDASDED-- 787
            LAATAVDFPKTGK+V MP+ LKPK+YPDFM K ++ SYKSEKILGRLYR+IKDA DED  
Sbjct: 953  LAATAVDFPKTGKVVTMPSYLKPKVYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVA 1012

Query: 786  NSSELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGH 607
             SSEL  V  D+P+D +LEV GAS+Y+ +AW+ KCSYD QLN LL Q++V +E E+VTGH
Sbjct: 1013 ASSELNPVPGDIPYDSDLEVVGASDYINDAWDQKCSYDGQLNGLLSQYKVKREEELVTGH 1072

Query: 606  LCSMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAW 427
            + SM K++SRKQGE+K+RLK++Y +L K++R+ FE +  +  QL D EKN  YE+KASAW
Sbjct: 1073 IWSMPKYSSRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAW 1132

Query: 426  YCVTYHPKWVEKSIAMREADGERVPPRLSFAWIPADYLVRIKIKSRD-GKVGTGKPIDSL 250
            Y V YHP WV+KS+ +++ DG      LSF WI ADYL RIKI+ R+ G V + KP++SL
Sbjct: 1133 YQVAYHPHWVKKSLELQDPDGAGTSVMLSFGWIAADYLARIKIRHRETGNVDSAKPVNSL 1192

Query: 249  ASYLYERM 226
            A YL +R+
Sbjct: 1193 AKYLADRI 1200


>ref|XP_021597106.1| RNA-dependent RNA polymerase 6 [Manihot esculenta]
 gb|OAY27377.1| hypothetical protein MANES_16G121400 [Manihot esculenta]
          Length = 1199

 Score = 1483 bits (3840), Expect = 0.0
 Identities = 742/1203 (61%), Positives = 906/1203 (75%), Gaps = 5/1203 (0%)
 Frame = -3

Query: 3819 SHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDSYPDFDISED 3640
            + KD ++TQVS+ GF++    A+ L   LE  +  ++WRCRLK+S TPP+SYP+FDI+  
Sbjct: 6    NEKDTVVTQVSIGGFNS-RVKAKDLVAYLESEIG-LVWRCRLKTSWTPPESYPNFDITNT 63

Query: 3639 MKKKKQPARPSPSFTAPHAFLQFATPAGAQRVLDAAARCDLVLGSKPLIARASSDTSYRI 3460
               ++           PHAF+ FA+P  A    +AA RC+L L  +PL      +  Y +
Sbjct: 64   AGVQRTDGHNK---IEPHAFVHFASPQSATWAKNAAGRCELFLNDRPLKVSLGPENPYHM 120

Query: 3459 N-RRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESNVNFLIDPFDNSCKLLFTGD 3283
            N RRR+  PF   D   EIG+L S   FL  W     P S V+FL+DPFD +CK  FT D
Sbjct: 121  NQRRRTTTPFKLSDVHVEIGTL-SRNEFLVGWS---GPSSGVDFLVDPFDGTCKFCFTRD 176

Query: 3282 VAFTVNGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLNLGAAPLVYYRTADD 3103
             AF+V  T E  VIRC+FKLEFL+RD+ E+K   D     L+  L L +AP V+YRTADD
Sbjct: 177  TAFSVKDTTEHAVIRCDFKLEFLVRDINEVKQYTDWNTSSLVILLQLVSAPFVWYRTADD 236

Query: 3102 DIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAMEYMKERRID 2923
            DI     +NLLDD+DPWIRTTDFTPSGAIGRCN YR+S+ PR G KL RA+ Y+KERR+ 
Sbjct: 237  DIEVLAPFNLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLNRALNYLKERRVQ 296

Query: 2922 GLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVNFANLFMVNALVHKGIFSQHRVTEEFF 2743
                  P+   +E  +G   +D FFC H+KEG+ F  +F+VNA++HKGIF+QH++++ FF
Sbjct: 297  LEFLKMPLKNSNEPEYGMPMSDAFFCIHHKEGIAFEVMFLVNAVMHKGIFNQHQLSDSFF 356

Query: 2742 GLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTASADNMEVRR 2563
             LL  Q + VN  AL+HI +YK+PVFDA   LK VQ+WLL   +L K P    D +E+RR
Sbjct: 357  DLLRSQPLDVNLSALKHICSYKRPVFDAYCCLKAVQQWLLNNPKLFKSPKQLDDIVEIRR 416

Query: 2562 LVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNFYVAPIVRE 2383
            L ITPT+AYCLPPE+EL+NRVLR+Y+D++DRFLRVTFMDEG+Q +N+N L +YVAPIVRE
Sbjct: 417  LAITPTRAYCLPPEVELSNRVLRKYKDIADRFLRVTFMDEGLQTINANTLTYYVAPIVRE 476

Query: 2382 ISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDQSAWFFAEDKHTSVHDI 2203
            I++NS SQKT +F+RVK I+  GF LCGR+YSFLAFSSNQLRD+SAWFFAE+   SVH I
Sbjct: 477  ITSNSFSQKTRVFKRVKGILTDGFYLCGRRYSFLAFSSNQLRDRSAWFFAENAEISVHQI 536

Query: 2202 TSWMGKFKDKNVAKYAARMGQCFSSTYATVEVPSYEVVPFLPDIKRNNYCFSDGIGKITP 2023
             SWMG+F ++N+AK AARMGQCFSSTYATVEVPS EV   LPDI+RN Y FSDGIG ITP
Sbjct: 537  RSWMGRFTNRNIAKCAARMGQCFSSTYATVEVPSGEVNLSLPDIERNGYIFSDGIGTITP 596

Query: 2022 DLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYKFQSEHTMLE 1843
            DLA EVA+KL+L  NPP AYQIRYAG KGV+A WP   DGIRLSLR SM KFQS HT LE
Sbjct: 597  DLAKEVAEKLKLDANPPCAYQIRYAGCKGVVACWPAQGDGIRLSLRPSMNKFQSNHTTLE 656

Query: 1842 VVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAFDVLTTSCA 1663
            + SWTRFQPGFLNRQI+TLLS L+VPD++F  MQ  MV KLDQML++ DVAFDV+T SCA
Sbjct: 657  ICSWTRFQPGFLNRQIITLLSVLQVPDEIFWEMQFDMVSKLDQMLMDADVAFDVITASCA 716

Query: 1662 EQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSLKARIFVPKGRWLMGCFDELGV 1483
            EQGN AA+MLSAGF PQ EPHL+ ML+CIR +QL  L  KARIFV  GRWLMGC DELGV
Sbjct: 717  EQGNTAAIMLSAGFKPQKEPHLQGMLTCIRAAQLWGLREKARIFVSSGRWLMGCLDELGV 776

Query: 1482 LEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVVLAKNPCLHPGDVRILEAVD 1303
            LEQGQCFIQ S+PSLENCFLKHGS+FS  K+N +VI GTVV+AKNPCLHPGDVRILEAVD
Sbjct: 777  LEQGQCFIQVSNPSLENCFLKHGSRFSEIKKNLEVIKGTVVIAKNPCLHPGDVRILEAVD 836

Query: 1302 VPGLRHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSRRSWMPMAYTPAV 1123
             P L HL DCL+FPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPS+RSW PM Y  A 
Sbjct: 837  APELHHLHDCLIFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWTPMQYNAAE 896

Query: 1122 PKDEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKLAELAATAV 943
             K   R +  QDIIDFF +++ NENLG ICNAHVV ADLS+YGA+DDNC+KLAELAATAV
Sbjct: 897  AKVLNRPVRSQDIIDFFARHMVNENLGAICNAHVVRADLSEYGALDDNCIKLAELAATAV 956

Query: 942  DFPKTGKIVHMPASLKPKLYPDFMDKNDHHSYKSEKILGRLYRKIKDASDED---NSSEL 772
            DFPKTG +V MP  L+PK+YPDFM K D+ SYKS KILGRLYR++KDA D++    SSEL
Sbjct: 957  DFPKTGMLVTMPPYLRPKMYPDFMGKEDYQSYKSTKILGRLYRQVKDACDDNVVAASSEL 1016

Query: 771  ISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGHLCSMG 592
              V  D+P+D +LEV G+S+Y++EAW+ KCSYD QL  L+GQ++V +E EVVTGH+ SM 
Sbjct: 1017 NIVPGDIPYDRDLEVSGSSDYILEAWDQKCSYDGQLKGLMGQYKVKREEEVVTGHIWSMP 1076

Query: 591  KHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAWYCVTY 412
            K+NSRK GE+KERLK +Y  L K++R+ FE +  D  QL+D+EKN+ YE+KASAWY V Y
Sbjct: 1077 KYNSRKNGELKERLKQSYSGLKKEFRQVFEKMDLDFEQLSDDEKNLLYERKASAWYQVAY 1136

Query: 411  HPKWVEKSIAMREADGERVPPRLSFAWIPADYLVRIKIKSRDGK-VGTGKPIDSLASYLY 235
            HP W++KS+ ++  + +     LSFAWI ADYL RIKIK R  + V T KP++SL  YL 
Sbjct: 1137 HPTWIKKSLELQGPEADDSAAMLSFAWIAADYLARIKIKCRGIEGVDTSKPVNSLVKYLA 1196

Query: 234  ERM 226
            +R+
Sbjct: 1197 DRI 1199


>ref|XP_002515520.1| PREDICTED: RNA-dependent RNA polymerase 6 [Ricinus communis]
 gb|EEF46969.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
          Length = 1203

 Score = 1481 bits (3834), Expect = 0.0
 Identities = 741/1207 (61%), Positives = 916/1207 (75%), Gaps = 11/1207 (0%)
 Frame = -3

Query: 3813 KDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDSYPDFDISEDMK 3634
            K+ ++TQVS  GFD  + TA+ L   L++ +  V WRCRLK+S TPP+SYP+F+I++   
Sbjct: 8    KETVVTQVSFGGFDK-DVTARDLVAYLDNEIGQV-WRCRLKTSWTPPESYPNFEITDTAV 65

Query: 3633 KKKQPARPSPSFTAPHAFLQFATPAGAQRVLDAAARCDLVLGSKPLIARASSDTSYRIN- 3457
             ++  A        PHAF+ FA+P  A    +AA  C+L    +P+      +  + +N 
Sbjct: 66   IQRVDAYRR---VEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQ 122

Query: 3456 RRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESNVNFLIDPFDNSCKLLFTGDVA 3277
            RRR+  PF   D   EIG+L S   FL  W+    P S V+FL+DPFD  CK  FT D A
Sbjct: 123  RRRTTIPFKLSDVHVEIGTLVSRDEFLVGWR---GPPSGVDFLVDPFDGKCKFCFTRDTA 179

Query: 3276 FTVNGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLNLGAAPLVYYRTADDDI 3097
            F+  GT E  VIRC+FKLEFL+RD+ E+K   D    V++ QL   +AP V+YRTADDDI
Sbjct: 180  FSFKGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQL--ASAPSVWYRTADDDI 237

Query: 3096 HNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAMEYMKERRIDGL 2917
               V ++LLDD+DPWIRTTDFTPSGAIGRCN YR+S+ PR G KLKRA+ +++ERR+   
Sbjct: 238  EVLVPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQED 297

Query: 2916 RPDRPIVVKDEANFGEIATDPFFCFHYKEGVNFANLFMVNALVHKGIFSQHRVTEEFFGL 2737
               RP+ V  E  +    +DPFFC H++EGV+F  +F+VNA++HKGIF+QH++++ FF L
Sbjct: 298  CLRRPLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDL 357

Query: 2736 LNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTASADNMEVRRLV 2557
            L  Q + VN  ALRHI +YK PVFDA +RLK VQ+WLL   +L +      D +E+RRL 
Sbjct: 358  LRNQPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLA 417

Query: 2556 ITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNFYVAPIVREIS 2377
            ITPT+AYCLPPE+EL+NRVLRRY+D++D+FLRVTFMDEG+Q +N+N L +Y APIVR+I+
Sbjct: 418  ITPTRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDIT 477

Query: 2376 NNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDQSAWFFAEDKHTSVHDITS 2197
            +NS SQKT +F+RVK+I+  GF LCGRKYSFLAFSSNQLRD+SAWFFAED  TSV  I +
Sbjct: 478  SNSFSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRN 537

Query: 2196 WMGKFKDKNVAKYAARMGQCFSSTYATVEVPSYEVVPFLPDIKRNNYCFSDGIGKITPDL 2017
            WMGKF ++N+AK AARMGQCFSSTYATVEVPS E +  LPDI+RNNY FSDGIG ITPDL
Sbjct: 538  WMGKFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDL 597

Query: 2016 AMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYKFQSEHTMLEVV 1837
            A EVA+KL+L  NPP AYQIRYAG KGV+A WP + DGIRLSLR SM KF S HT LE+ 
Sbjct: 598  AKEVAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEIC 657

Query: 1836 SWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAFDVLTTSCAEQ 1657
            SWTRFQPGFLNRQI+TLLS L+VPD++F +MQ  MV KL+QM ++ DVAFDV+T SCAEQ
Sbjct: 658  SWTRFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQ 717

Query: 1656 GNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSLKARIFVPKGRWLMGCFDELGVLE 1477
            GN AA+MLSAGF+P+ EPHL  ML+CIR +QL  L  K RIFVP GRWLMGC DELGVLE
Sbjct: 718  GNTAAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLE 777

Query: 1476 QGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVVLAKNPCLHPGDVRILEAVDVP 1297
             GQCFIQ S+PSLE+CF KHGS+FS +K+  QV+ GTVV+AKNPCLHPGD+RILEAVD P
Sbjct: 778  HGQCFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAP 837

Query: 1296 GLRHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSRRSWMPMAYTPAVPK 1117
             L HL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPS+RSW+PM Y  A  K
Sbjct: 838  ELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAK 897

Query: 1116 DEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKLAELAATAVDF 937
               R + HQDIIDFF KN+ NENLG ICNAHVVHADLS+YGA+D+NC+KLAELAATAVDF
Sbjct: 898  QLNRPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDF 957

Query: 936  PKTGKIVHMPASLKPKLYPDFMDKNDHHSYKSEKILGRLYRKIKDASDEDN--------S 781
            PKTGK+V MP  LKPKLYPDFM K D+ SY S KILGRLYR++KD  ++D+        S
Sbjct: 958  PKTGKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATS 1017

Query: 780  SELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGHLC 601
            SEL  V  D+P+D++LEV G+S+Y+++AW+ KCSYD QL  LL Q++V +E EVVTGH+ 
Sbjct: 1018 SELNLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIW 1077

Query: 600  SMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAWYC 421
            SM K NSRKQGE+KERLK +Y++L K++R+ FE + +D  QLT++EKN+ YE+KASAWY 
Sbjct: 1078 SMPKCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQ 1137

Query: 420  VTYHPKWVEKSIAMREADGERVPPRLSFAWIPADYLVRIKIKSR--DGKVGTGKPIDSLA 247
            V YHPKWV KS+ ++E D       LSFAWI ADYL RIKI+ R  DG V T KP++SL 
Sbjct: 1138 VAYHPKWVNKSMELQEPDAAGCASMLSFAWIAADYLARIKIRCRGFDG-VDTSKPVNSLV 1196

Query: 246  SYLYERM 226
             YL +R+
Sbjct: 1197 KYLADRI 1203


>ref|XP_021670990.1| RNA-dependent RNA polymerase 6-like [Hevea brasiliensis]
 ref|XP_021670991.1| RNA-dependent RNA polymerase 6-like [Hevea brasiliensis]
          Length = 1199

 Score = 1477 bits (3824), Expect = 0.0
 Identities = 743/1205 (61%), Positives = 910/1205 (75%), Gaps = 7/1205 (0%)
 Frame = -3

Query: 3819 SHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDSYPDFDISE- 3643
            S KD ++TQVS  GFD  +  A+ L   LE  +  ++WRCRLK+S TPP+SYP+F+I+  
Sbjct: 6    SEKDTVVTQVSFGGFDI-HIKAKDLVAYLESEIG-LVWRCRLKTSWTPPESYPNFEITNT 63

Query: 3642 -DMKKKKQPARPSPSFTAPHAFLQFATPAGAQRVLDAAARCDLVLGSKPLIARASSDTSY 3466
             D+++ +   R       PHAF+ FA+P  A    +AA RC+L L  +PL      +  Y
Sbjct: 64   ADVQRTEGHKR-----IEPHAFVHFASPESATWAKNAAGRCELFLNDRPLKVSLGPENPY 118

Query: 3465 RIN-RRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESNVNFLIDPFDNSCKLLFT 3289
             +N RRR+  PF   DAR EIG++     FL AW+    P S V+FL+DPFD +CK  FT
Sbjct: 119  HMNQRRRTTTPFKLSDARIEIGTVCR-NEFLVAWR---GPSSGVDFLVDPFDGTCKFCFT 174

Query: 3288 GDVAFTVNGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLNLGAAPLVYYRTA 3109
             D AF++  T E  VIRC+FKLEFL+RD+ E+K   D     L+  L L +AP V YRTA
Sbjct: 175  RDTAFSLKDTTEHAVIRCDFKLEFLVRDINEVKQYTDWSTSSLVILLQLASAPCVCYRTA 234

Query: 3108 DDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAMEYMKERR 2929
            DDDI   V ++LLDD+DPWIRTTDFT SGAIGRCN YR+S+ PR G KL RA+ Y+ ERR
Sbjct: 235  DDDIEVLVPFDLLDDDDPWIRTTDFTASGAIGRCNSYRVSIPPRHGAKLNRALRYLGERR 294

Query: 2928 IDGLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVNFANLFMVNALVHKGIFSQHRVTEE 2749
            +       P+ + +E ++G   +D FFC H+KEG+ F  +F+VNA++HKGIF+QH++++ 
Sbjct: 295  VQLEFLKLPLKISNEPDYGMPMSDTFFCIHHKEGIAFDVMFLVNAVMHKGIFNQHQLSDS 354

Query: 2748 FFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTASADNMEV 2569
            FF LL  Q V VN VAL+HI +YK+PV DA   LK VQ WLL   +L   P    D +E+
Sbjct: 355  FFDLLRSQPVDVNLVALKHICSYKRPVIDASISLKAVQLWLLNNPKLFNRPKQLDDIVEI 414

Query: 2568 RRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNFYVAPIV 2389
            RRL ITPTKAYCLPPE+EL+NRVLR+Y+D++DRFLRVTFMDEG+Q +N+N L +YVAPIV
Sbjct: 415  RRLAITPTKAYCLPPEVELSNRVLRKYKDIADRFLRVTFMDEGLQTINANTLTYYVAPIV 474

Query: 2388 REISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDQSAWFFAEDKHTSVH 2209
            R+I++NS SQKT +F+RVK I+  GF LCGR+YSFLAFSSNQLRD+SAWFFAE+   SV 
Sbjct: 475  RDITSNSFSQKTRVFKRVKGILTDGFYLCGRRYSFLAFSSNQLRDRSAWFFAENGEISVQ 534

Query: 2208 DITSWMGKFKDKNVAKYAARMGQCFSSTYATVEVPSYEVVPFLPDIKRNNYCFSDGIGKI 2029
             I +WMG+F ++N+AK AARMGQCFSSTYATVEVPS E    LPDI+RN Y FSDGIG I
Sbjct: 535  QIRNWMGRFTNRNIAKCAARMGQCFSSTYATVEVPSGEADLSLPDIERNGYIFSDGIGII 594

Query: 2028 TPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYKFQSEHTM 1849
            TPDLA EVA+KL+L  NPP AYQIRYAG KGV+A WP   DGIRLSLR SM KF S HT 
Sbjct: 595  TPDLAKEVAEKLKLDANPPCAYQIRYAGCKGVVACWPAQGDGIRLSLRPSMDKFHSNHTT 654

Query: 1848 LEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAFDVLTTS 1669
            LE+ SWTRFQPGFLNRQI+TLLS L+VPD++F +MQ +MV KLDQML++ DVAFDV+T S
Sbjct: 655  LEICSWTRFQPGFLNRQIITLLSVLKVPDEIFWKMQIAMVSKLDQMLMDADVAFDVITAS 714

Query: 1668 CAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSLKARIFVPKGRWLMGCFDEL 1489
            CAEQGN AA+MLSAGF PQ EPHL+ ML+CIR +QL  L  KARIFV  GRWLMGC DEL
Sbjct: 715  CAEQGNTAAIMLSAGFKPQKEPHLRGMLTCIRAAQLWGLREKARIFVHSGRWLMGCLDEL 774

Query: 1488 GVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVVLAKNPCLHPGDVRILEA 1309
            GVLEQGQCFIQ S+PSLENCFLKHGS+FS  K+N QVI GTVV+AKNPCLHPGD+RILEA
Sbjct: 775  GVLEQGQCFIQVSNPSLENCFLKHGSRFSEAKKNLQVIKGTVVIAKNPCLHPGDIRILEA 834

Query: 1308 VDVPGLRHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSRRSWMPMAYTP 1129
            VD PGL HL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENL+PPS++SW PM Y  
Sbjct: 835  VDAPGLHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLLPPSKKSWTPMQYDA 894

Query: 1128 AVPKDEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKLAELAAT 949
            A  K   R +  QDIIDFF K++ NENLG ICNAHVVHADLS++GA+D+NC+KLAELAAT
Sbjct: 895  AEAKLLHRPVRSQDIIDFFAKHMVNENLGAICNAHVVHADLSEHGALDENCIKLAELAAT 954

Query: 948  AVDFPKTGKIVHMPASLKPKLYPDFMDKNDHHSYKSEKILGRLYRKIKDASD---EDNSS 778
            AVDFPKTGK+V MP SLKPK+YPDFM K D+ SYKS KILGRLYR++KDA D   E  SS
Sbjct: 955  AVDFPKTGKLVTMPHSLKPKMYPDFMGKEDYQSYKSTKILGRLYRQVKDAYDDNVESASS 1014

Query: 777  ELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGHLCS 598
            EL  V  D+P+D +LEV G+S+Y+++AW+ KCSYD QL  L+GQ++V +E EVVTGH+ S
Sbjct: 1015 ELNIVPGDIPYDRDLEVFGSSDYILDAWDQKCSYDGQLKGLMGQYKVRREEEVVTGHIWS 1074

Query: 597  MGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAWYCV 418
            M K+NSRK GE+KERLK +Y  L K++R+ FE +  D  QL D+EKN+ YE+KASAWY V
Sbjct: 1075 MPKYNSRKNGELKERLKQSYSGLKKEFRQVFEKMDLDFEQLPDDEKNLLYERKASAWYQV 1134

Query: 417  TYHPKWVEKSIAMREADGERVPPRLSFAWIPADYLVRIKIKSRDGK-VGTGKPIDSLASY 241
             YHP W+ KS+ ++  +       LSFAWI ADYL RIKIK R  + VGT KP++SL  Y
Sbjct: 1135 AYHPSWINKSLELQGPEAADNAAMLSFAWIAADYLARIKIKCRGIEGVGTAKPVNSLMRY 1194

Query: 240  LYERM 226
            L +R+
Sbjct: 1195 LADRI 1199


>ref|XP_010648660.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1477 bits (3824), Expect = 0.0
 Identities = 753/1210 (62%), Positives = 923/1210 (76%), Gaps = 9/1210 (0%)
 Frame = -3

Query: 3828 SNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDSYPDFDI 3649
            S  S KD ++TQ+S+ GFD    TA  L   LE  +  V  RCRLK+SSTPP+SYPDF+I
Sbjct: 3    SEGSEKDMVVTQISIGGFDQY-VTATELTYYLEDTIGSVD-RCRLKTSSTPPESYPDFEI 60

Query: 3648 SEDMKKKKQPARPSPSFTAPHAFLQFATPAGAQRVLDAAARCDLVLGSKPLIARASSDTS 3469
             +  K ++           PHAF+ F +P  A   LDAA + +L L  KPL      +T 
Sbjct: 61   IDTAKIERTEDYKK---VEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETP 117

Query: 3468 YRIN-RRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESNVNFLIDPFDNSCKLLF 3292
            + +N RRR+  PF FPD R EIG L S   + A W+    P S V+FL+DPFD +CK LF
Sbjct: 118  FHLNQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWR---GPSSGVDFLVDPFDGTCKFLF 174

Query: 3291 TGDVAFTVNGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLNLGAAPLVYYRT 3112
            T D AF+  G  +  VI+CNFK+EFL+R++ E++   D    +L+ QL+  ++P VYYRT
Sbjct: 175  TKDTAFSFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLS--SSPFVYYRT 232

Query: 3111 ADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAMEYMKER 2932
            ADDDI  +V ++LLDD+DPWIRTTDFT SGAIGRCN YRIS+ PR+G KLK+AM+Y++ R
Sbjct: 233  ADDDIEETVPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRAR 292

Query: 2931 RIDGLR--PDRPIVVKDEANFGEIATDPFFCFHYKEGVNFANLFMVNALVHKGIFSQHRV 2758
            R++ L   P   + V+DE +FG   +DPFFC  +KEG++F  +F+VNA++HKGI +QH++
Sbjct: 293  RVNVLEDSPKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQL 352

Query: 2757 TEEFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTASADN 2578
            +++FF LL  Q   +N  AL+HI +Y+ PVFDA +RLK+V +WLL   +L+K P    D 
Sbjct: 353  SDKFFDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDI 412

Query: 2577 MEVRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNFYVA 2398
            +EVRRLVITP+KAYCLPPE+EL+NRVLR Y+++SDRFLRVTFMDEGMQ +N+NVLN+YVA
Sbjct: 413  VEVRRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVA 472

Query: 2397 PIVREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDQSAWFFAEDKHT 2218
            PIV+ I++NS  QKT +F+RVK I+  GF LCGRKYSFLAFSSNQLRD+SAWFFAEDK T
Sbjct: 473  PIVKVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKT 532

Query: 2217 SVHDITSWMGKFKDKNVAKYAARMGQCFSSTYATVEVPSYEVVPFLPDIKRNNYCFSDGI 2038
            SV  I SWMGKF ++NVAK AARMGQCFSSTYATVEVPS+EV   LPDIKRN Y FSDGI
Sbjct: 533  SVRAIKSWMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEVKE-LPDIKRNGYDFSDGI 591

Query: 2037 GKITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYKFQSE 1858
            GKI PDLAMEVA+KL+L E  PSAYQIRYAG KGV+A WP ++DGIRLS R SM KF S+
Sbjct: 592  GKIVPDLAMEVAEKLKL-EGTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSD 650

Query: 1857 HTMLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAFDVL 1678
            HT+LE+ SWTRFQPGFLNRQIVTLLSAL VPD +F +MQ+SM+ KL+QML + DVAFDVL
Sbjct: 651  HTILEICSWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVL 710

Query: 1677 TTSCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSLKARIFVPKGRWLMGCF 1498
              SCAEQGN AA+MLSAGF PQ EPHL+ ML+CIR +Q   L  KARIFVP GRWLMGC 
Sbjct: 711  IASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCL 770

Query: 1497 DELGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVVLAKNPCLHPGDVRI 1318
            DELGVLEQGQCFIQ SSPSLENCFLKHGS+FS  K N +VI G V +AKNPCLHPGDVRI
Sbjct: 771  DELGVLEQGQCFIQVSSPSLENCFLKHGSRFSAQK-NLKVIKGIVAIAKNPCLHPGDVRI 829

Query: 1317 LEAVDVPGLRHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSRRSWMPMA 1138
            LEAVD PGL HLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTW+E LIPPS++SW PM 
Sbjct: 830  LEAVDAPGLEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQ 889

Query: 1137 YTPAVPKDEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKLAEL 958
            Y  A  K   R +   DIIDFF KN+ NENLG ICNAHVVHAD S+YGA+D+ CL LAE 
Sbjct: 890  YDSAEAKALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAER 949

Query: 957  AATAVDFPKTGKIVHMPASLKPKLYPDFMDKNDHHSYKSEKILGRLYRKIKDASDED--N 784
            AATAVDFPKTGK+V +P  LKPK+YPDFM K +  +Y+S KILG++YR+IKDA +ED   
Sbjct: 950  AATAVDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSE 1009

Query: 783  SSELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGHL 604
            SSE I     +PFDE+L + G+++++ +AW  KCSYD QLN LLGQ++V +E EVVTGH+
Sbjct: 1010 SSEQIFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHV 1069

Query: 603  CSMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAWY 424
             SM K+ SRKQGE+ ERLK+AY +L K++R+ FE + +D  QLTD+EKN  YE+KASAWY
Sbjct: 1070 WSMPKYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWY 1129

Query: 423  CVTYHPKWVEKSIAMREAD---GERVPPRLSFAWIPADYLVRIKIKSR-DGKVGTGKPID 256
             VTYHP WV+KS+ ++  D   GERV   LSFAWI ADYL RIKI+ +  G V + KPI+
Sbjct: 1130 QVTYHPTWVKKSLELQNPDEVFGERV--MLSFAWITADYLARIKIRRKGTGNVDSSKPIN 1187

Query: 255  SLASYLYERM 226
            SLA +L +R+
Sbjct: 1188 SLARFLVDRI 1197