BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00012900
         (1139 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]          253   2e-90
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     239   1e-83
gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposo...   235   7e-79
gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposo...   235   7e-79
gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposo...   234   9e-79
gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposo...   232   5e-78
gb|KYP38095.1| Retrovirus-related Pol polyprotein from transposo...   229   4e-77
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar...   226   2e-76
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar...   226   2e-76
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   216   2e-76
gb|KYP68607.1| Retrovirus-related Pol polyprotein from transposo...   203   4e-76
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              220   9e-76
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              222   4e-75
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              220   8e-75
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              216   2e-74
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                             212   2e-74
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   211   3e-74
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711...   206   5e-73
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   204   9e-73
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  214   1e-72

>gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]
          Length = 876

 Score =  253 bits (645), Expect(2) = 2e-90
 Identities = 138/318 (43%), Positives = 192/318 (60%), Gaps = 26/318 (8%)
 Frame = +2

Query: 263  NRILTERARSLRLQADMSKGFWAMTVNHACHLVNRSPSTAIYLQIPEKVWR*ESISYSQL 442
            N  LTERAR L+L+A +SKGFWA T+N AC+L+NRSP  ++  ++ E+VW  + I    L
Sbjct: 508  NMSLTERARCLQLKAGLSKGFWAETINMACYLINRSPRASLEGKVAEEVWTGKPIDLDNL 567

Query: 443  CIFGCPAYALLDXXXXXXXXXXXXXCIFVGFSHGVKGYKLWNLETKGAFMSRDVVFDEDS 622
             IFGCP +  +              CIFVG+S GVKG+KLW+  +K   +SRDVVFDE  
Sbjct: 568  RIFGCPTFVHISSEDRSKLDPKSKKCIFVGYSKGVKGFKLWDPVSKKMVLSRDVVFDEQF 627

Query: 623  ILRQGSSAEDKVQGG------VLEISTD-----------SKSPEEPATEQSTSDSG---E 742
            +L+Q    E     G      V+++  +            + PE       T+DSG   E
Sbjct: 628  MLKQSRETEVTESAGGSSGKEVIQVELEPTPNKNTSAVHQQPPEPTPINHDTADSGGASE 687

Query: 743  D*CAISEVQSVPLRQSERHVEHLDRYGCEPQDYGAFALLTEAGDPSSYKEAIKTDDNDRW 922
            D   + + Q    R+  R +    RYG E  D  A+ALLT +GDPS+++EAI + + D+W
Sbjct: 688  DSVGVDDYQLARDRE-RRSINPPQRYGFE--DLAAYALLTSSGDPSTFREAIVSQEKDKW 744

Query: 923  VVAMKLEMESLDQNQSWSLVDLPKGSRAIGCKWVFRK------KDQEHYKARLVAKGYAQ 1084
            + AM  EMESL +NQ+W LV LP G R IGCKWV+++      K+ E +KARLVAKGY+Q
Sbjct: 745  MGAMMEEMESLQKNQTWELVQLPMGKRTIGCKWVYKRKSAVTEKEGEKFKARLVAKGYSQ 804

Query: 1085 KEGVDYNKIFSPVVKHTS 1138
            ++G+DY++IFSPVV+HTS
Sbjct: 805  QKGIDYDEIFSPVVRHTS 822



 Score =  110 bits (274), Expect(2) = 2e-90
 Identities = 53/95 (55%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
 Frame = +1

Query: 1   YFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVENRKGMKVKVLRSDNSGEYTLEEFK 180
           YFVTF DDFSRK+WVYF+K KS+VF  FK+WK  VEN+ G K+K LRSDN  EYT  +F+
Sbjct: 421 YFVTFTDDFSRKLWVYFMKQKSEVFSKFKLWKAEVENQTGRKIKYLRSDNGTEYTNSQFE 480

Query: 181 KYLADEGIYH*LSIPERSEQNGVAERIKQD-TDRA 282
           K+    GI    S+ +  +QNGVAER+    T+RA
Sbjct: 481 KFCEQHGIQRHFSVRKTPQQNGVAERMNMSLTERA 515


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  239 bits (609), Expect(2) = 1e-83
 Identities = 132/315 (41%), Positives = 185/315 (58%), Gaps = 23/315 (7%)
 Frame = +2

Query: 263  NRILTERARSLRLQADMSKGFWAMTVNHACHLVNRSPSTAIYLQIPEKVWR*ESISYSQL 442
            NR L E+ RS+R  A + + FWA   NHAC+L+NRSPS AI  +  E+VW  + + YS L
Sbjct: 561  NRTLMEKERSMRFHAGLPEEFWAEAANHACYLINRSPSRAINFKCAEEVWSGKPVDYSNL 620

Query: 443  CIFGCPAYALLDXXXXXXXXXXXXXCIFVGFSHGVKGYKLWNLETKGAFMSRDVVFDEDS 622
             +FGC AYA +              C+F+GF  GVKGYKLW++  +   +SRDVVFDE  
Sbjct: 621  RVFGCSAYAHIPKDERTKLEPKSLECLFIGFEKGVKGYKLWDIVNEKKVISRDVVFDERE 680

Query: 623  I----LRQGSSAEDKVQGGVLEISTDSKSPEEPATEQSTSDSGED*CAISEVQSVPLRQS 790
                 L + S A+ + Q    E   D  + EEP  +Q  +   +   +    Q+ P+ Q+
Sbjct: 681  AISISLAKPSVADSEAQVEQNEQGNDEVAIEEPEHQQQPTVMAQVEQSPQRGQNSPIPQA 740

Query: 791  -------------ERHVEHLDRYGCEPQDYGAFALLTEAGDPSSYKEAIKTDDNDRWVVA 931
                         +R+ + + R+G EP++  + AL    GDP++Y++AI++ ++  W+ A
Sbjct: 741  PESFKRSIALDKPKRNRKPIQRFGFEPEEDVSRALSISQGDPTTYEDAIESVESAGWIGA 800

Query: 932  MKLEMESLDQNQSWSLVDLPKGSRAIGCKWVFRKKDQEH------YKARLVAKGYAQKEG 1093
            M  EMESL +N  W LV  PK  + +GCKWVFRKK+  H      YKARLVAKGY+QKEG
Sbjct: 801  MTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHEDDAITYKARLVAKGYSQKEG 860

Query: 1094 VDYNKIFSPVVKHTS 1138
            VDY++IFSPVVKHTS
Sbjct: 861  VDYDEIFSPVVKHTS 875



 Score =  101 bits (252), Expect(2) = 1e-83
 Identities = 47/89 (52%), Positives = 64/89 (71%)
 Frame = +1

Query: 1   YFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVENRKGMKVKVLRSDNSGEYTLEEFK 180
           YFV+FIDDFSRKVW++F+K K++VF  FK WK  V N+ G K+K LRSDN GEY  ++F 
Sbjct: 474 YFVSFIDDFSRKVWIFFMKTKNEVFTKFKEWKAEVGNQTGRKIKCLRSDNGGEYRDKKFL 533

Query: 181 KYLADEGIYH*LSIPERSEQNGVAERIKQ 267
           +   DEGI    ++ +  +QNGVAER+ +
Sbjct: 534 QLCKDEGITRHFTVKKSPQQNGVAERMNR 562


>gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  235 bits (599), Expect(2) = 7e-79
 Identities = 126/297 (42%), Positives = 181/297 (60%), Gaps = 5/297 (1%)
 Frame = +2

Query: 263  NRILTERARSLRLQADMSKGFWAMTVNHACHLVNRSPSTAIYLQIPEKVWR*ESISYSQL 442
            NR L ER R++   A ++K FWA  V  AC+L+NRSPSTAI L+ P ++W  +  +YS L
Sbjct: 588  NRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWNGKPSNYSSL 647

Query: 443  CIFGCPAYALLDXXXXXXXXXXXXXCIFVGFSHGVKGYKLWNLETKGAFMSRDVVFDEDS 622
             +FGCP Y + +             CIF+G++  VKGY+LW+   +   +SRDVVF E  
Sbjct: 648  HVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAETE 707

Query: 623  ILRQGSSAEDKVQGGVLEISTDSKSPEEPATEQSTSDSGED*CAISEVQSVPLRQSERHV 802
            + ++  +        ++EI   SK  +    EQ   +   D     EVQ +  R+  R  
Sbjct: 708  LQKEQENDSTIKDTSIVEIGGKSKKDDTSEAEQEHEEQEPDEANDEEVQQI-RRERRRPS 766

Query: 803  EHLDRYGCEPQDYGAFALLTEAGDPSSYKEAIKTDDNDRWVVAMKLEMESLDQNQSWSLV 982
             H D Y     D  A+ LLTE G+PS+++EA+++ D  +W+ AM  E+E+L +N++W LV
Sbjct: 767  WHSD-YVMASHD--AYCLLTEEGEPSTFQEALRSSDVSQWMAAMHEEIEALHRNKTWELV 823

Query: 983  DLPKGSRAIGCKWVFRKK----DQ-EHYKARLVAKGYAQKEGVDYNKIFSPVVKHTS 1138
            DLPKG +AIGCKWV++ K    DQ E Y+ARLV KGYAQKEG+D+N+IFSPVV+ T+
Sbjct: 824  DLPKGRKAIGCKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTT 880



 Score = 89.4 bits (220), Expect(2) = 7e-79
 Identities = 43/89 (48%), Positives = 59/89 (66%)
 Frame = +1

Query: 1   YFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVENRKGMKVKVLRSDNSGEYTLEEFK 180
           YFV+FIDD+SR++WVY +K KSDVF  FK +K  VE   G ++K LR+DN GEY   +F 
Sbjct: 501 YFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDNGGEYIDGDFL 560

Query: 181 KYLADEGIYH*LSIPERSEQNGVAERIKQ 267
            +   EGI    ++    +QNGVAER+ +
Sbjct: 561 AFCKQEGIKRQFTVAHTPQQNGVAERMNR 589


>gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score =  235 bits (599), Expect(2) = 7e-79
 Identities = 126/297 (42%), Positives = 181/297 (60%), Gaps = 5/297 (1%)
 Frame = +2

Query: 263  NRILTERARSLRLQADMSKGFWAMTVNHACHLVNRSPSTAIYLQIPEKVWR*ESISYSQL 442
            NR L ER R++   A ++K FWA  V  AC+L+NRSPSTAI L+ P ++W  +  +YS L
Sbjct: 539  NRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWNGKPSNYSSL 598

Query: 443  CIFGCPAYALLDXXXXXXXXXXXXXCIFVGFSHGVKGYKLWNLETKGAFMSRDVVFDEDS 622
             +FGCP Y + +             CIF+G++  VKGY+LW+   +   +SRDVVF E  
Sbjct: 599  HVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAETE 658

Query: 623  ILRQGSSAEDKVQGGVLEISTDSKSPEEPATEQSTSDSGED*CAISEVQSVPLRQSERHV 802
            + ++  +        ++EI   SK  +    EQ   +   D     EVQ +  R+  R  
Sbjct: 659  LQKEQENDSTIKDTSIVEIGGKSKKDDTSEAEQEHEEQEPDEANDEEVQQI-RRERRRPS 717

Query: 803  EHLDRYGCEPQDYGAFALLTEAGDPSSYKEAIKTDDNDRWVVAMKLEMESLDQNQSWSLV 982
             H D Y     D  A+ LLTE G+PS+++EA+++ D  +W+ AM  E+E+L +N++W LV
Sbjct: 718  WHSD-YVMASHD--AYCLLTEEGEPSTFQEALRSSDVSQWMAAMHEEIEALHRNKTWELV 774

Query: 983  DLPKGSRAIGCKWVFRKK----DQ-EHYKARLVAKGYAQKEGVDYNKIFSPVVKHTS 1138
            DLPKG +AIGCKWV++ K    DQ E Y+ARLV KGYAQKEG+D+N+IFSPVV+ T+
Sbjct: 775  DLPKGRKAIGCKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTT 831



 Score = 89.4 bits (220), Expect(2) = 7e-79
 Identities = 43/89 (48%), Positives = 59/89 (66%)
 Frame = +1

Query: 1   YFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVENRKGMKVKVLRSDNSGEYTLEEFK 180
           YFV+FIDD+SR++WVY +K KSDVF  FK +K  VE   G ++K LR+DN GEY   +F 
Sbjct: 452 YFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDNGGEYIDGDFL 511

Query: 181 KYLADEGIYH*LSIPERSEQNGVAERIKQ 267
            +   EGI    ++    +QNGVAER+ +
Sbjct: 512 AFCKQEGIKRQFTVAHTPQQNGVAERMNR 540


>gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score =  234 bits (598), Expect(2) = 9e-79
 Identities = 126/297 (42%), Positives = 181/297 (60%), Gaps = 5/297 (1%)
 Frame = +2

Query: 263  NRILTERARSLRLQADMSKGFWAMTVNHACHLVNRSPSTAIYLQIPEKVWR*ESISYSQL 442
            NR L ER R++   A ++K FWA  V  AC+L+NRSPSTAI L+ P ++W  +  +YS L
Sbjct: 539  NRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWSGKPSNYSSL 598

Query: 443  CIFGCPAYALLDXXXXXXXXXXXXXCIFVGFSHGVKGYKLWNLETKGAFMSRDVVFDEDS 622
             +FGCP Y + +             CIF+G++  VKGY+LW+   +   +SRDVVF E  
Sbjct: 599  HVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAETE 658

Query: 623  ILRQGSSAEDKVQGGVLEISTDSKSPEEPATEQSTSDSGED*CAISEVQSVPLRQSERHV 802
            + ++  +        ++EI   SK  +    EQ   +   D     EVQ +  R+  R  
Sbjct: 659  LQKEQENDSTIKDTSIVEIGGKSKKDDTSEAEQEHEEQEPDEANDEEVQQI-RRERRRPS 717

Query: 803  EHLDRYGCEPQDYGAFALLTEAGDPSSYKEAIKTDDNDRWVVAMKLEMESLDQNQSWSLV 982
             H D Y     D  A+ LLTE G+PS+++EA+++ D  +W+ AM  E+E+L +N++W LV
Sbjct: 718  WHSD-YVMASHD--AYCLLTEEGEPSTFQEALRSSDVSQWMAAMHEEIEALHRNKTWELV 774

Query: 983  DLPKGSRAIGCKWVFRKK----DQ-EHYKARLVAKGYAQKEGVDYNKIFSPVVKHTS 1138
            DLPKG +AIGCKWV++ K    DQ E Y+ARLV KGYAQKEG+D+N+IFSPVV+ T+
Sbjct: 775  DLPKGRKAIGCKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTT 831



 Score = 89.4 bits (220), Expect(2) = 9e-79
 Identities = 43/89 (48%), Positives = 59/89 (66%)
 Frame = +1

Query: 1   YFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVENRKGMKVKVLRSDNSGEYTLEEFK 180
           YFV+FIDD+SR++WVY +K KSDVF  FK +K  VE   G ++K LR+DN GEY   +F 
Sbjct: 452 YFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDNGGEYIDGDFL 511

Query: 181 KYLADEGIYH*LSIPERSEQNGVAERIKQ 267
            +   EGI    ++    +QNGVAER+ +
Sbjct: 512 AFCKQEGIKRQFTVAHTPQQNGVAERMNR 540


>gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  232 bits (592), Expect(2) = 5e-78
 Identities = 125/297 (42%), Positives = 180/297 (60%), Gaps = 5/297 (1%)
 Frame = +2

Query: 263  NRILTERARSLRLQADMSKGFWAMTVNHACHLVNRSPSTAIYLQIPEKVWR*ESISYSQL 442
            NR L ER R++   A ++K FWA  V  AC+L+NRSPSTAI L+ P ++W  +  +YS L
Sbjct: 588  NRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWSGKPSNYSSL 647

Query: 443  CIFGCPAYALLDXXXXXXXXXXXXXCIFVGFSHGVKGYKLWNLETKGAFMSRDVVFDEDS 622
             +FGCP Y + +             CIF+G++  VKGY+LW+   +   +SRDVVF E  
Sbjct: 648  HVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAETE 707

Query: 623  ILRQGSSAEDKVQGGVLEISTDSKSPEEPATEQSTSDSGED*CAISEVQSVPLRQSERHV 802
            + ++  +        ++EI   SK  +    EQ   +   D     EVQ +  R+  R  
Sbjct: 708  LQKEQENDSTIKDTSIVEIGGKSKKDDTSEAEQEHEEQEPDEANDEEVQQI-RRERRRPS 766

Query: 803  EHLDRYGCEPQDYGAFALLTEAGDPSSYKEAIKTDDNDRWVVAMKLEMESLDQNQSWSLV 982
             H D Y     D  A+ LLTE G+PS+++EA+++ D  +W+ AM  E+E+L +N++W LV
Sbjct: 767  WHSD-YVMASHD--AYCLLTEEGEPSTFQEALRSSDVSQWMAAMHEEIEALHRNKTWELV 823

Query: 983  DLPKGSRAIGCKWVFRKK----DQ-EHYKARLVAKGYAQKEGVDYNKIFSPVVKHTS 1138
            DLPKG +AIGCKWV++ K    DQ E Y+ARLV KGYAQK G+D+N+IFSPVV+ T+
Sbjct: 824  DLPKGRKAIGCKWVYKIKRDGNDQVERYRARLVVKGYAQKAGIDFNEIFSPVVRLTT 880



 Score = 89.4 bits (220), Expect(2) = 5e-78
 Identities = 43/89 (48%), Positives = 59/89 (66%)
 Frame = +1

Query: 1   YFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVENRKGMKVKVLRSDNSGEYTLEEFK 180
           YFV+FIDD+SR++WVY +K KSDVF  FK +K  VE   G ++K LR+DN GEY   +F 
Sbjct: 501 YFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDNGGEYIDGDFL 560

Query: 181 KYLADEGIYH*LSIPERSEQNGVAERIKQ 267
            +   EGI    ++    +QNGVAER+ +
Sbjct: 561 AFCKQEGIKRQFTVAHTPQQNGVAERMNR 589


>gb|KYP38095.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score =  229 bits (584), Expect(2) = 4e-77
 Identities = 123/297 (41%), Positives = 182/297 (61%), Gaps = 5/297 (1%)
 Frame = +2

Query: 263  NRILTERARSLRLQADMSKGFWAMTVNHACHLVNRSPSTAIYLQIPEKVWR*ESISYSQL 442
            NR L ER R++   A ++K FWA  V  AC+L+NRSPSTAI L+ P ++W  +  +YS L
Sbjct: 539  NRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWNGKPSNYSSL 598

Query: 443  CIFGCPAYALLDXXXXXXXXXXXXXCIFVGFSHGVKGYKLWNLETKGAFMSRDVVFDEDS 622
             +FGCP Y + +             CIF+G++  VKGY+LW+   +   +SRDVVF E  
Sbjct: 599  HVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAETE 658

Query: 623  ILRQGSSAEDKVQGGVLEISTDSKSPEEPATEQSTSDSGED*CAISEVQSVPLRQSERHV 802
            + ++  +        ++EI   SK  +    EQ   +   +     +V+    RQ+++  
Sbjct: 659  LQKEQENDSTIKDTSIVEIGGKSKEDDTSEAEQEHDEQEPNEDNDGDVRRT-TRQTKKPS 717

Query: 803  EHLDRYGCEPQDYGAFALLTEAGDPSSYKEAIKTDDNDRWVVAMKLEMESLDQNQSWSLV 982
             H D Y     D  A+ LLTE G+PS+++EA+++ D  +W+ AM  E+E+L +N++W LV
Sbjct: 718  WHSD-YVMASHD--AYCLLTEEGEPSTFQEALRSSDVSQWMAAMHEEIEALHRNKTWELV 774

Query: 983  DLPKGSRAIGCKWVFRKK----DQ-EHYKARLVAKGYAQKEGVDYNKIFSPVVKHTS 1138
            DLPKG +AIGCKWV++ K    DQ E Y+ARLV KGYAQKEG+D+N+IFSPVV+ T+
Sbjct: 775  DLPKGRKAIGCKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTT 831



 Score = 89.4 bits (220), Expect(2) = 4e-77
 Identities = 43/89 (48%), Positives = 59/89 (66%)
 Frame = +1

Query: 1   YFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVENRKGMKVKVLRSDNSGEYTLEEFK 180
           YFV+FIDD+SR++WVY +K KSDVF  FK +K  VE   G ++K LR+DN GEY   +F 
Sbjct: 452 YFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDNGGEYIDGDFL 511

Query: 181 KYLADEGIYH*LSIPERSEQNGVAERIKQ 267
            +   EGI    ++    +QNGVAER+ +
Sbjct: 512 AFCKQEGIKRQFTVAHTPQQNGVAERMNR 540


>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
          Length = 2351

 Score =  226 bits (575), Expect(2) = 2e-76
 Identities = 131/316 (41%), Positives = 183/316 (57%), Gaps = 24/316 (7%)
 Frame = +2

Query: 263  NRILTERARSLRLQADMSKGFWAMTVNHACHLVNRSPSTAIYLQIPEKVWR*ESISYSQL 442
            NR L ERAR +R  A + + FWA  VN AC+LVNRSPSTAI L+ PE+VW      YS L
Sbjct: 1086 NRTLLERARCMRSNAGLGEEFWAEAVNTACYLVNRSPSTAIELKTPEEVWSGSPADYSGL 1145

Query: 443  CIFGCPAYALLDXXXXXXXXXXXXXCIFVGFSHGVKGYKLWNLETKGA--FMSRDVVFDE 616
             +FGCPAYA ++             CIF+G+  GVKGY+LW  +   +   +SRDV FDE
Sbjct: 1146 RVFGCPAYAHVN---EGKLKPRAKKCIFLGYGQGVKGYRLWCPDPVSSKFIISRDVTFDE 1202

Query: 617  DSILRQGSSAEDKVQG------GV---LEISTDSKSPEEPATEQ----STSDSGED*CAI 757
             S+LR  +++ +K +       GV   +E   D+  P E  + Q       DS ED    
Sbjct: 1203 SSMLRSTTNSREKEESDRMGDHGVEKQVECQVDAPIPTEGTSVQDDQVEVQDSDEDESPQ 1262

Query: 758  SEVQSVPLRQSERHVEHLDRYGCEPQDYGAFALLTEAG---DPSSYKEAIKTDDNDRWVV 928
             +  S+   +++R ++   RY     +  +FAL        +PSSY EA+  D++ +W +
Sbjct: 1263 EKPYSIATGRTKRQIKPNPRYA----NLVSFALSVAESIGIEPSSYNEAVTCDESAQWAI 1318

Query: 929  AMKLEMESLDQNQSWSLVDLPKGSRAIGCKWVFRKK------DQEHYKARLVAKGYAQKE 1090
            AM  E+ESL +N +W LV  P   + +GCKWVF+KK      +   +KARLVAKG+ QKE
Sbjct: 1319 AMSEEIESLHKNHTWELVKPPSNQKIVGCKWVFKKKEGILGVEATRFKARLVAKGFTQKE 1378

Query: 1091 GVDYNKIFSPVVKHTS 1138
            G+DYN++FSPVVKH+S
Sbjct: 1379 GIDYNEVFSPVVKHSS 1394



 Score = 90.5 bits (223), Expect(2) = 2e-76
 Identities = 43/89 (48%), Positives = 60/89 (67%)
 Frame = +1

Query: 1    YFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVENRKGMKVKVLRSDNSGEYTLEEFK 180
            Y +TFIDD+SRKVWVYFLK K +V   FK +K L+EN+ G K+K  R+DN  E+   EF 
Sbjct: 999  YLLTFIDDYSRKVWVYFLKSKYEVLINFKQFKALIENQTGKKIKRFRTDNGLEFCSGEFN 1058

Query: 181  KYLADEGIYH*LSIPERSEQNGVAERIKQ 267
            ++  +EGI    ++    +QNGVAER+ +
Sbjct: 1059 EFCKNEGIVRHRTVRRTPQQNGVAERMNR 1087


>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
          Length = 1841

 Score =  226 bits (575), Expect(2) = 2e-76
 Identities = 131/316 (41%), Positives = 183/316 (57%), Gaps = 24/316 (7%)
 Frame = +2

Query: 263  NRILTERARSLRLQADMSKGFWAMTVNHACHLVNRSPSTAIYLQIPEKVWR*ESISYSQL 442
            NR L ERAR +R  A + + FWA  VN AC+LVNRSPSTAI L+ PE+VW      YS L
Sbjct: 1107 NRTLLERARCMRSNAGLGEEFWAEAVNTACYLVNRSPSTAIELKTPEEVWSGSPADYSGL 1166

Query: 443  CIFGCPAYALLDXXXXXXXXXXXXXCIFVGFSHGVKGYKLWNLETKGA--FMSRDVVFDE 616
             +FGCPAYA ++             CIF+G+  GVKGY+LW  +   +   +SRDV FDE
Sbjct: 1167 RVFGCPAYAHVN---EGKLKPRAKKCIFLGYGQGVKGYRLWCPDPVSSKFIISRDVTFDE 1223

Query: 617  DSILRQGSSAEDKVQG------GV---LEISTDSKSPEEPATEQ----STSDSGED*CAI 757
             S+LR  +++ +K +       GV   +E   D+  P E  + Q       DS ED    
Sbjct: 1224 SSMLRSTTNSREKEESDRMGDHGVEKQVECQVDAPIPTEGTSVQDDQVEVQDSDEDESPQ 1283

Query: 758  SEVQSVPLRQSERHVEHLDRYGCEPQDYGAFALLTEAG---DPSSYKEAIKTDDNDRWVV 928
             +  S+   +++R ++   RY     +  +FAL        +PSSY EA+  D++ +W +
Sbjct: 1284 EKPYSIATGRTKRQIKPNPRYA----NLVSFALSVAESIGIEPSSYNEAVTCDESAQWAI 1339

Query: 929  AMKLEMESLDQNQSWSLVDLPKGSRAIGCKWVFRKK------DQEHYKARLVAKGYAQKE 1090
            AM  E+ESL +N +W LV  P   + +GCKWVF+KK      +   +KARLVAKG+ QKE
Sbjct: 1340 AMSEEIESLHKNHTWELVKPPSNQKIVGCKWVFKKKEGILGVEATRFKARLVAKGFTQKE 1399

Query: 1091 GVDYNKIFSPVVKHTS 1138
            G+DYN++FSPVVKH+S
Sbjct: 1400 GIDYNEVFSPVVKHSS 1415



 Score = 90.5 bits (223), Expect(2) = 2e-76
 Identities = 43/89 (48%), Positives = 60/89 (67%)
 Frame = +1

Query: 1    YFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVENRKGMKVKVLRSDNSGEYTLEEFK 180
            Y +TFIDD+SRKVWVYFLK K +V   FK +K L+EN+ G K+K  R+DN  E+   EF 
Sbjct: 1020 YLLTFIDDYSRKVWVYFLKSKYEVLINFKQFKALIENQTGKKIKRFRTDNGLEFCSGEFN 1079

Query: 181  KYLADEGIYH*LSIPERSEQNGVAERIKQ 267
            ++  +EGI    ++    +QNGVAER+ +
Sbjct: 1080 EFCKNEGIVRHRTVRRTPQQNGVAERMNR 1108


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  216 bits (550), Expect(2) = 2e-76
 Identities = 134/320 (41%), Positives = 185/320 (57%), Gaps = 28/320 (8%)
 Frame = +2

Query: 263  NRILTERARSLRLQADMSKGFWAMTVNHACHLVNRSPSTAIYLQIPEKVWR*ESISYSQL 442
            N+ L +RAR +R+ A +SK FWA  VN A +LVNRSPSTAI  + P++VW  +  +YS L
Sbjct: 699  NQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGL 758

Query: 443  CIFGCPAYALLDXXXXXXXXXXXXXCIFVGFSHGVKGYKLWNLE--TKGAFMSRDVVFDE 616
             IFGCPAYA +              CIF+G++ GVKGY+LW  E  T    +SRDV FDE
Sbjct: 759  KIFGCPAYAHVS---DGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDE 815

Query: 617  DSILRQ--------GSS-----AEDKVQGGV---LEISTDSKSPEEPATEQSTSDSGED* 748
             ++  Q        G+S     A  KV+  V   +E   D  S E+P  +Q+ S      
Sbjct: 816  SAMFGQRKEFGDLAGTSKTDLGANQKVEFEVDAPMENGVDDTSEEQPVIDQNDSQ----- 870

Query: 749  CAISEVQSVPLRQSERHVEHLDRYGCEPQDYGAFALLT--EAG--DPSSYKEAIKTDDND 916
               S     P R+  R + ++D       +  AFAL    E G  +P SYKEA+++ D+ 
Sbjct: 871  ---SIAAHRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSK 927

Query: 917  RWVVAMKLEMESLDQNQSWSLVDLPKGSRAIGCKWVFRKKD------QEHYKARLVAKGY 1078
            +W+ +M  EM SL +NQ+W LV LP+G + + CKW+F+ KD         YK+RLVAKG+
Sbjct: 928  KWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISXDEPPKYKSRLVAKGF 987

Query: 1079 AQKEGVDYNKIFSPVVKHTS 1138
            +QKEG+DYN++FSPVVKH S
Sbjct: 988  SQKEGIDYNEVFSPVVKHKS 1007



 Score = 99.8 bits (247), Expect(2) = 2e-76
 Identities = 48/89 (53%), Positives = 61/89 (68%)
 Frame = +1

Query: 1   YFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVENRKGMKVKVLRSDNSGEYTLEEFK 180
           Y+VTFIDDFSRKVWVYFLK K +VF  FK WK +VE R G  VK LR+DN  E+  ++F 
Sbjct: 612 YYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFD 671

Query: 181 KYLADEGIYH*LSIPERSEQNGVAERIKQ 267
           ++   EGI    ++    +QNGVAER+ Q
Sbjct: 672 EFCRKEGIVRHRTVRHTPQQNGVAERMNQ 700


>gb|KYP68607.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1291

 Score =  203 bits (517), Expect(2) = 4e-76
 Identities = 113/296 (38%), Positives = 169/296 (57%), Gaps = 4/296 (1%)
 Frame = +2

Query: 263  NRILTERARSLRLQADMSKGFWAMTVNHACHLVNRSPSTAIYLQIPEKVWR*ESISYSQL 442
            NR L ERAR +R+Q+ + K FWA  +N A +L+NR PS  +  Q+PE+VW  + ++ S L
Sbjct: 561  NRTLNERARCMRIQSGLPKVFWADAINTAAYLINRGPSVPLGYQLPEEVWSGKEVNLSHL 620

Query: 443  CIFGCPAYALLDXXXXXXXXXXXXXCIFVGFSHGVKGYKLWNLETKGAFMSRDVVFDEDS 622
             +FGC +Y L+D             C F+G+   + GY+ W+ + K    SR+V F+E+ 
Sbjct: 621  RVFGCVSYVLIDSDSRDKLDPKAKKCYFIGYGSDMYGYRFWDDQNKKIIRSRNVTFNENL 680

Query: 623  ILRQGSSAEDKVQGGVLEISTDSKSPEEPATEQSTSDSGED*CAISEVQSVPLRQSERHV 802
              +   SAE      + E S   +  E   ++ +      D    SE  S PLR+S R  
Sbjct: 681  FYKDRFSAESIDTDKLPEPSEKVELEEISESDITNRSQSTDIEVESEPASPPLRRSCRVS 740

Query: 803  EHLDRYGCEPQDYGAFALLTEAGDPSSYKEAIKTDDNDRWVVAMKLEMESLDQNQSWSLV 982
               +RY         + LLT+AG+P  + EAI+ +D+ +W +AMK EM SL +N +WSL 
Sbjct: 741  VAPERYSPSLH----YLLLTDAGEPEYFDEAIQGNDSVKWELAMKDEMTSLQKNGTWSLT 796

Query: 983  DLPKGSRAIGCKWVFRKKDQ----EHYKARLVAKGYAQKEGVDYNKIFSPVVKHTS 1138
            +LP+G  A+  KWV+R K++    + YKARLV KG+ QK G+D+ +IFSPVVK T+
Sbjct: 797  ELPEGKMALQNKWVYRLKEESDGRKRYKARLVVKGFQQKPGIDFTEIFSPVVKMTT 852



 Score =  111 bits (278), Expect(2) = 4e-76
 Identities = 53/89 (59%), Positives = 66/89 (74%)
 Frame = +1

Query: 1   YFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVENRKGMKVKVLRSDNSGEYTLEEFK 180
           Y+VTFIDD +RKVWVYFLK+KSDVF  FK WK  VEN+ G+K+K L+SDN GEY   EFK
Sbjct: 474 YYVTFIDDATRKVWVYFLKNKSDVFSVFKRWKTEVENQTGLKLKSLKSDNGGEYNSHEFK 533

Query: 181 KYLADEGIYH*LSIPERSEQNGVAERIKQ 267
            + ++ GI    +IP   EQNGVAER+ +
Sbjct: 534 NFCSEHGIRMIKTIPGTPEQNGVAERMNR 562


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  220 bits (561), Expect(2) = 9e-76
 Identities = 119/297 (40%), Positives = 176/297 (59%), Gaps = 5/297 (1%)
 Frame = +2

Query: 263  NRILTERARSLRLQADMSKGFWAMTVNHACHLVNRSPSTAIYLQIPEKVWR*ESISYSQL 442
            NR L ER R++   A M+K FWA  V  AC+++NRSPSTAI L+ P ++W+ + + YS L
Sbjct: 589  NRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSL 648

Query: 443  CIFGCPAYALLDXXXXXXXXXXXXXCIFVGFSHGVKGYKLWNLETKGAFMSRDVVFDEDS 622
             +FGCP Y + +             CIF+G++  VKGY+LW+   +   +SRDVVF E+ 
Sbjct: 649  HVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENE 708

Query: 623  ILRQGSSAEDKVQGGVLEISTDSKSPEEPATEQSTSDSGED*CAISEVQSVPLRQSERHV 802
            +  Q     D        +  + KS E  ++E       ++   ++       RQ+++  
Sbjct: 709  L--QSKQKNDSTSKETAIVQMEEKSKESDSSEAEPVHEEQEPDDVNNGVRRSTRQTQKPS 766

Query: 803  EHLDRYGCEPQDYGAFALLTEAGDPSSYKEAIKTDDNDRWVVAMKLEMESLDQNQSWSLV 982
               D Y     D  A+ L+TE G+PS++ EA+   D  +W+ AM  EME+L +N++W LV
Sbjct: 767  WQSD-YVMTSHD--AYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELV 823

Query: 983  DLPKGSRAIGCKWVFRKK----DQ-EHYKARLVAKGYAQKEGVDYNKIFSPVVKHTS 1138
            +LPKG +AIG KWV++ K    DQ E Y+ARLV KGYAQKEG+D+N+IFSPVV+ T+
Sbjct: 824  ELPKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTT 880



 Score = 93.6 bits (231), Expect(2) = 9e-76
 Identities = 44/89 (49%), Positives = 59/89 (66%)
 Frame = +1

Query: 1   YFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVENRKGMKVKVLRSDNSGEYTLEEFK 180
           YFV+FIDD+SR++WVY +K KSDVF  FK +K  +E   G K+K LR+DN GEY   EF 
Sbjct: 502 YFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFL 561

Query: 181 KYLADEGIYH*LSIPERSEQNGVAERIKQ 267
            +   EGI    ++    +QNGVAER+ +
Sbjct: 562 AFCKQEGIVRQFTVAHTPQQNGVAERMNR 590


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  222 bits (565), Expect(2) = 4e-75
 Identities = 119/297 (40%), Positives = 178/297 (59%), Gaps = 5/297 (1%)
 Frame = +2

Query: 263  NRILTERARSLRLQADMSKGFWAMTVNHACHLVNRSPSTAIYLQIPEKVWR*ESISYSQL 442
            NR L ER R++   A M+K FWA  V  AC+++NRSPSTAI L+ P ++W+ + + YS L
Sbjct: 589  NRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSL 648

Query: 443  CIFGCPAYALLDXXXXXXXXXXXXXCIFVGFSHGVKGYKLWNLETKGAFMSRDVVFDEDS 622
             +FGCP Y + +             CIF+G++  VKGY+LW+   +   +SRDVVF E+ 
Sbjct: 649  HVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENE 708

Query: 623  ILRQGSSAEDKVQGGVLEISTDSKSPEEPATEQSTSDSGED*CAISEVQSVPLRQSERHV 802
            +  Q     D        +  + KS E  ++E  +    ++   +++      RQ+++  
Sbjct: 709  L--QSEQKNDSTSKETAIVQMEEKSKESDSSEAESVHEEQEPDDVNDGVRRSTRQTQKPS 766

Query: 803  EHLDRYGCEPQDYGAFALLTEAGDPSSYKEAIKTDDNDRWVVAMKLEMESLDQNQSWSLV 982
               D Y     D  A+ L+TE G+PS++ EA+   D  +W+ AM  EME+L +N++W LV
Sbjct: 767  WQSD-YVMTSHD--AYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELV 823

Query: 983  DLPKGSRAIGCKWVFRKK----DQ-EHYKARLVAKGYAQKEGVDYNKIFSPVVKHTS 1138
            +LPKG +AIG KWV++ K    DQ E Y+ARLV KGYAQKEG+D+N+IFSPVV+ T+
Sbjct: 824  ELPKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTT 880



 Score = 90.1 bits (222), Expect(2) = 4e-75
 Identities = 43/89 (48%), Positives = 58/89 (65%)
 Frame = +1

Query: 1   YFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVENRKGMKVKVLRSDNSGEYTLEEFK 180
           YFV+FIDD+SR++WVY +K KSDVF  FK +K  +E     K+K LR+DN GEY   EF 
Sbjct: 502 YFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETRKKIKCLRTDNGGEYIDGEFL 561

Query: 181 KYLADEGIYH*LSIPERSEQNGVAERIKQ 267
            +   EGI    ++    +QNGVAER+ +
Sbjct: 562 AFCKQEGIVRQFTVAHTPQQNGVAERMNR 590


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  220 bits (561), Expect(2) = 8e-75
 Identities = 118/297 (39%), Positives = 177/297 (59%), Gaps = 5/297 (1%)
 Frame = +2

Query: 263  NRILTERARSLRLQADMSKGFWAMTVNHACHLVNRSPSTAIYLQIPEKVWR*ESISYSQL 442
            NR L ER R++   A M+K FWA     AC+++NRSPSTAI L+ P ++W+ + + YS L
Sbjct: 589  NRTLLERTRAMLKTAGMAKSFWAEAAKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSL 648

Query: 443  CIFGCPAYALLDXXXXXXXXXXXXXCIFVGFSHGVKGYKLWNLETKGAFMSRDVVFDEDS 622
             +FGCP Y + +             CIF+G++  VKGY+LW+   +   +SRDVVF E+ 
Sbjct: 649  HVFGCPVYVMYNSQEKTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENE 708

Query: 623  ILRQGSSAEDKVQGGVLEISTDSKSPEEPATEQSTSDSGED*CAISEVQSVPLRQSERHV 802
            +  Q     D        +  + KS E  ++E  +    ++   +++      RQ+++  
Sbjct: 709  L--QSEQKNDSTSKETAIVQMEEKSKESDSSEAESVHEEQEPDDVNDGVRRSTRQTQKPS 766

Query: 803  EHLDRYGCEPQDYGAFALLTEAGDPSSYKEAIKTDDNDRWVVAMKLEMESLDQNQSWSLV 982
               D Y     D  A+ L+TE G+PS++ EA+   D  +W+ AM  EME+L +N++W LV
Sbjct: 767  WQSD-YVMTSHD--AYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELV 823

Query: 983  DLPKGSRAIGCKWVFRKK----DQ-EHYKARLVAKGYAQKEGVDYNKIFSPVVKHTS 1138
            +LPKG +AIG KWV++ K    DQ E Y+ARLV KGYAQKEG+D+N+IFSPVV+ T+
Sbjct: 824  ELPKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTT 880



 Score = 90.5 bits (223), Expect(2) = 8e-75
 Identities = 43/89 (48%), Positives = 58/89 (65%)
 Frame = +1

Query: 1   YFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVENRKGMKVKVLRSDNSGEYTLEEFK 180
           YFV+FIDD+SR++WVY +K KSDVF  FK +K  +E     K+K LR+DN GEY   EF 
Sbjct: 502 YFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETEKKIKCLRTDNGGEYVDGEFL 561

Query: 181 KYLADEGIYH*LSIPERSEQNGVAERIKQ 267
            +   EGI    ++    +QNGVAER+ +
Sbjct: 562 AFCKQEGIVRQFTVAHTPQQNGVAERMNR 590


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  216 bits (550), Expect(2) = 2e-74
 Identities = 116/297 (39%), Positives = 180/297 (60%), Gaps = 5/297 (1%)
 Frame = +2

Query: 263  NRILTERARSLRLQADMSKGFWAMTVNHACHLVNRSPSTAIYLQIPEKVWR*ESISYSQL 442
            NR L ER R++   A+M+K FWA  V  AC+++NRSPST I L+ P ++W+ + + YS L
Sbjct: 589  NRTLLERTRAMLKTAEMAKSFWAEAVKTACYVINRSPSTTIDLKTPMEMWKGKPVDYSSL 648

Query: 443  CIFGCPAYALLDXXXXXXXXXXXXXCIFVGFSHGVKGYKLWNLETKGAFMSRDVVFDEDS 622
             +FGCP Y + +             CIF+G++  VKGY+LW+   +   +SRDVVF E+ 
Sbjct: 649  HVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENE 708

Query: 623  ILRQGSSAEDKVQGGVLEISTDSKSPEEPATEQSTSDSGED*CAISEVQSVPLRQSERHV 802
            +  +  +     +  +L+I  + KS E  ++E  +    ++   ++       RQ+++  
Sbjct: 709  LQSEQKNDSTFKETAILQI--EEKSKESDSSEAESVHEEQEPDDVNNGVRRSTRQTQKPS 766

Query: 803  EHLDRYGCEPQDYGAFALLTEAGDPSSYKEAIKTDDNDRWVVAMKLEMESLDQNQSWSLV 982
               D Y     D  A+ L+ E G+PS++ EA+   D  +W+ A+  EME+L +N++W LV
Sbjct: 767  WQSD-YVMTGHD--AYCLIAEEGEPSTFHEALNGSDASQWMTAIHEEMEALRKNKTWELV 823

Query: 983  DLPKGSRAIGCKWVFRKK----DQ-EHYKARLVAKGYAQKEGVDYNKIFSPVVKHTS 1138
            +LPKG +AIG KWV++ K    DQ E Y+ARLV KGYAQKEG+D+N+IFSPVV+ T+
Sbjct: 824  ELPKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTT 880



 Score = 93.6 bits (231), Expect(2) = 2e-74
 Identities = 44/89 (49%), Positives = 59/89 (66%)
 Frame = +1

Query: 1   YFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVENRKGMKVKVLRSDNSGEYTLEEFK 180
           YFV+FIDD+SR++WVY +K KSDVF  FK +K  +E   G K+K LR+DN GEY   EF 
Sbjct: 502 YFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFL 561

Query: 181 KYLADEGIYH*LSIPERSEQNGVAERIKQ 267
            +   EGI    ++    +QNGVAER+ +
Sbjct: 562 AFCKQEGIVRQFTVAHTPQQNGVAERMNR 590


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  212 bits (540), Expect(2) = 2e-74
 Identities = 129/309 (41%), Positives = 179/309 (57%), Gaps = 17/309 (5%)
 Frame = +2

Query: 263  NRILTERARSLRLQADMSKGFWAMTVNHACHLVNRSPSTAIYLQIPEKVWR*ESISYSQL 442
            NR L ER R++   A + K FWA  VN AC+LVNR+PSTAI L+ P ++W  + + YS L
Sbjct: 579  NRTLLERTRAMLRAAGLEKSFWAEAVNTACYLVNRAPSTAIELKTPMEMWTGKPVDYSNL 638

Query: 443  CIFGCPAYALLDXXXXXXXXXXXXXCIFVGFSHGVKGYKLWNLETKGAFMSRDVVFDEDS 622
             IFG   YA+ +             C F+G++ GVKGY+LW+       +SRDV+F    
Sbjct: 639  HIFGSIVYAMYNAQEITKLDPKSRKCRFLGYADGVKGYRLWDPTAHKVVISRDVIF---- 694

Query: 623  ILRQGSSAEDKVQGGVLEISTDSKSPEE---PATEQSTSDSGED*CAISEVQ-----SVP 778
                    ED++Q G ++ ST+ + PE       E+   DS E   A  E +     +  
Sbjct: 695  -------VEDRLQRGEVDDSTEKEKPETTQIQVEEEFEQDSSEAEPAHEEPEPESSGAPT 747

Query: 779  LRQSERHVE----HLDRYGCEPQDYGAFALLTEAGDPSSYKEAIKTDDNDRWVVAMKLEM 946
             RQS+R       H D Y  E     A+ LLTE G+PS+++EAI + D  +W  AM+ E+
Sbjct: 748  TRQSDREKRRPTWHSD-YVMEGN--VAYCLLTEDGEPSTFQEAINSSDVSQWTAAMQEEI 804

Query: 947  ESLDQNQSWSLVDLPKGSRAIGCKWVFRKK----DQ-EHYKARLVAKGYAQKEGVDYNKI 1111
            E+L +N +W LV LP+G + IG KWVF+ K    DQ E Y+ARLV KGYAQKEG+D+N+I
Sbjct: 805  EALHKNNTWDLVPLPQGRKPIGNKWVFKIKRNGDDQVERYRARLVVKGYAQKEGIDFNEI 864

Query: 1112 FSPVVKHTS 1138
            FSPVV+ T+
Sbjct: 865  FSPVVRLTT 873



 Score = 97.4 bits (241), Expect(2) = 2e-74
 Identities = 47/89 (52%), Positives = 60/89 (67%)
 Frame = +1

Query: 1   YFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVENRKGMKVKVLRSDNSGEYTLEEFK 180
           YFV+FIDD+SR+ WVY +K KSDVF TFK +K  VE   G K+K  R+DN GEYT EEF 
Sbjct: 492 YFVSFIDDYSRRCWVYPIKKKSDVFATFKAFKARVELDSGKKIKCFRTDNGGEYTSEEFD 551

Query: 181 KYLADEGIYH*LSIPERSEQNGVAERIKQ 267
            +   EGI    ++    +QNGVAER+ +
Sbjct: 552 DFCKKEGIKRQFTVAYTPQQNGVAERMNR 580


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2340

 Score =  211 bits (538), Expect(2) = 3e-74
 Identities = 127/318 (39%), Positives = 179/318 (56%), Gaps = 26/318 (8%)
 Frame = +2

Query: 263  NRILTERARSLRLQADMSKGFWAMTVNHACHLVNRSPSTAIYLQIPEKVWR*ESISYSQL 442
            NR +  +AR L   A + K FWA  V+ AC+L+NRSPS AI  + P +VW     +YS L
Sbjct: 807  NRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDL 866

Query: 443  CIFGCPAYALLDXXXXXXXXXXXXXCIFVGFSHGVKGYKLWNLETKGAFMSRDVVFDEDS 622
             +FGC AYA +D             CIF+G+  GVKGYKLW  ETK   +SR+VVF E  
Sbjct: 867  RVFGCTAYAHVDNGKLEPRAIK---CIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESV 923

Query: 623  ILRQGSS------AEDKVQGGVLEISTDSKSPE---------EPATEQSTSDSGED*CAI 757
            +L    S      +++K    V  + +   +PE         EP  E S S   +     
Sbjct: 924  MLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDEPVIEDSNSSIVQQ---- 979

Query: 758  SEVQSVPLRQSERHVEHLDRYGCEPQDYGAFAL-----LTEAGDPSSYKEAIKTDDNDRW 922
            S  +S+   + +R+++   RY  E  +  A+AL     +    +PS+Y EAI +DD +RW
Sbjct: 980  SPKRSIAKDRPKRNIKPPQRY-IEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRW 1038

Query: 923  VVAMKLEMESLDQNQSWSLVDLPKGSRAIGCKWVFRKK------DQEHYKARLVAKGYAQ 1084
            + AM  EMESL++N +W LV LPK  + I CKW+F++K      D+  YKARL+AKGY+Q
Sbjct: 1039 ITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQ 1098

Query: 1085 KEGVDYNKIFSPVVKHTS 1138
              G+D+N +FSPVVKH+S
Sbjct: 1099 IPGIDFNDVFSPVVKHSS 1116



 Score = 97.4 bits (241), Expect(2) = 3e-74
 Identities = 44/89 (49%), Positives = 58/89 (65%)
 Frame = +1

Query: 1   YFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVENRKGMKVKVLRSDNSGEYTLEEFK 180
           Y +T +DD+SRKVW YFLKHK   F  FK WK +VE +   KVK+LR+DN  E+  + FK
Sbjct: 720 YMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFK 779

Query: 181 KYLADEGIYH*LSIPERSEQNGVAERIKQ 267
            Y   EGI    ++P   +QNGVAER+ +
Sbjct: 780 SYCKSEGIVRHYTVPHTPQQNGVAERMNR 808


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
 gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  206 bits (525), Expect(2) = 5e-73
 Identities = 126/315 (40%), Positives = 174/315 (55%), Gaps = 23/315 (7%)
 Frame = +2

Query: 263  NRILTERARSLRLQADMSKGFWAMTVNHACHLVNRSPSTAIYLQIPEKVWR*ESISYSQL 442
            N+ L ERAR +   A + + FWA  V+ AC+L+NR P T I  + P ++W  ++  YS L
Sbjct: 578  NQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNL 637

Query: 443  CIFGCPAYALLDXXXXXXXXXXXXXCIFVGFSHGVKGYKLWNLETKGAFMSRDVVFDEDS 622
              FGC AY  +               +FVG+  GVKG+++W+   K   MSR+VVFDE  
Sbjct: 638  KAFGCTAYYHVSEGKLEPRAKKG---VFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESP 694

Query: 623  ILR---------QGSSAEDKVQGGVLEISTDSKSPEE----PATEQSTSDSGED*CAISE 763
            +LR         +  S + +V+  V++  +D K PEE    P TE    +S       S 
Sbjct: 695  LLRTIVKPTTTSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSI 754

Query: 764  VQSVPLRQSERHVEHLDRYGCEPQDYGAFALLT----EAGDPSSYKEAIKTDDNDRWVVA 931
             Q  P R   R      RYG E  D   +AL      +  +PS+YKEAI + D+++W  A
Sbjct: 755  AQDRPRRVGVRPPT---RYGFE--DMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAA 809

Query: 932  MKLEMESLDQNQSWSLVDLPKGSRAIGCKWVFRKK------DQEHYKARLVAKGYAQKEG 1093
            M  EMESL +NQ+W LV  P G + I CKWVF+KK      +   YKAR+VA+G+ Q+EG
Sbjct: 810  MGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREG 869

Query: 1094 VDYNKIFSPVVKHTS 1138
            VDYN+IFSPVV+HTS
Sbjct: 870  VDYNEIFSPVVRHTS 884



 Score = 98.2 bits (243), Expect(2) = 5e-73
 Identities = 45/89 (50%), Positives = 61/89 (68%)
 Frame = +1

Query: 1   YFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVENRKGMKVKVLRSDNSGEYTLEEFK 180
           +FV+ IDD+SR  WVY +KHKS+ FQ FK WK L+EN+ G K+K LR+DN  E+   EF 
Sbjct: 491 FFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFD 550

Query: 181 KYLADEGIYH*LSIPERSEQNGVAERIKQ 267
           ++  DEGI    ++    +QNGVAER+ Q
Sbjct: 551 QFCKDEGIARHRTVRNTPQQNGVAERMNQ 579


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA92739.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1373

 Score =  204 bits (519), Expect(2) = 9e-73
 Identities = 120/322 (37%), Positives = 171/322 (53%), Gaps = 30/322 (9%)
 Frame = +2

Query: 263  NRILTERARSLRLQADMSKGFWAMTVNHACHLVNRSPSTAIYLQIPEKVWR*ESISYSQL 442
            NR +  RAR +   A M+K FWA   + AC+L+NRSPS  +  + P +VW      YSQL
Sbjct: 592  NRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQL 651

Query: 443  CIFGCPAYALLDXXXXXXXXXXXXXCIFVGFSHGVKGYKLWNLETKGAFMSRDVVFDEDS 622
             +FGC AYA +D             C+F+G+  GVKGYKLWN ET   FMSR VVF+E  
Sbjct: 652  KVFGCTAYAHVDNGKLEPRAVK---CLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESV 708

Query: 623  ILRQGSSAE-------DKVQGGVLEISTDSKSPEEPATEQS--TSDSGED*CAISEVQSV 775
            +      +E        ++   V  +  D+    EP  EQ    +D  +D       Q+ 
Sbjct: 709  MFTNSLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVHEQDDHNNDVADDDAHDDVQQTP 768

Query: 776  PLRQSERHVEHLDRYG----------CEPQDYGAFAL-----LTEAGDPSSYKEAIKTDD 910
            P+ Q E  +    R             E  +   +AL     +    +P++YKEA++  D
Sbjct: 769  PILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGD 828

Query: 911  NDRWVVAMKLEMESLDQNQSWSLVDLPKGSRAIGCKWVFRKK------DQEHYKARLVAK 1072
            ++ W+ AM  EM+SL++N +W +V LPK  + I CKW+F++K      +   YKARLVA+
Sbjct: 829  SENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVAR 888

Query: 1073 GYAQKEGVDYNKIFSPVVKHTS 1138
            GY+Q  GVDYN +FSPVVKH+S
Sbjct: 889  GYSQIPGVDYNDVFSPVVKHSS 910



 Score = 99.8 bits (247), Expect(2) = 9e-73
 Identities = 46/89 (51%), Positives = 58/89 (65%)
 Frame = +1

Query: 1   YFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVENRKGMKVKVLRSDNSGEYTLEEFK 180
           Y +T IDD+SRKVW YFLKHK D F  FK WK ++E +   KVK+LR+DN GE+    F 
Sbjct: 505 YMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFN 564

Query: 181 KYLADEGIYH*LSIPERSEQNGVAERIKQ 267
            Y   EGI    +IP   +QNGVAER+ +
Sbjct: 565 DYCRQEGIVRHHTIPHTPQQNGVAERMNR 593


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  214 bits (546), Expect(2) = 1e-72
 Identities = 117/300 (39%), Positives = 177/300 (59%), Gaps = 8/300 (2%)
 Frame = +2

Query: 263  NRILTERARSLRLQADMSKGFWAMTVNHACHLVNRSPSTAIYLQIPEKVWR*ESISYSQL 442
            NR L ER R++   A ++K FWA     AC+++NRSPSTAI L+ P ++W+ +   YS L
Sbjct: 589  NRTLLERTRAMLKTAGLAKSFWAEAAKTACYVINRSPSTAIGLKTPMEMWKGKPGDYSSL 648

Query: 443  CIFGCPAYALLDXXXXXXXXXXXXXCIFVGFSHGVKGYKLWNLETKGAFMSRDVVFDEDS 622
             +FGCP Y + +             C F+G++  VKGY+LW+   +  F+SRDV+F E+ 
Sbjct: 649  RVFGCPVYVMYNSQERTKLDPKSRRCTFLGYADNVKGYRLWDPTARKIFVSRDVIFVENE 708

Query: 623  ILRQGSSAEDKVQGGVLEI---STDSKSPEEPATEQSTSDSGED*CAISEVQSVPLRQSE 793
            + ++  +     +   +EI   S +  S  EP  E+   +   D  A     +  +R+  
Sbjct: 709  LQKEQKNDGTTKETATVEIEEKSGEENSEAEPEHEEQEPNEVND--AEPRRTTRQIRKPS 766

Query: 794  RHVEHLDRYGCEPQDYGAFALLTEAGDPSSYKEAIKTDDNDRWVVAMKLEMESLDQNQSW 973
             H E++         + A+ LL+E G+PS++ EA+   D   W+ AM+ E+E+L +N +W
Sbjct: 767  WHSEYV------MASHDAYCLLSEDGEPSTFHEAVNGSDASLWMAAMQEEIEALHRNNTW 820

Query: 974  SLVDLPKGSRAIGCKWVFRKK----DQ-EHYKARLVAKGYAQKEGVDYNKIFSPVVKHTS 1138
             LV+LPKG +AIG KWVF+ K    DQ E Y+ARLV KGYAQKEG+D+N+IFSPVV+ T+
Sbjct: 821  ELVELPKGRKAIGNKWVFKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTT 880



 Score = 89.0 bits (219), Expect(2) = 1e-72
 Identities = 42/89 (47%), Positives = 59/89 (66%)
 Frame = +1

Query: 1   YFVTFIDDFSRKVWVYFLKHKSDVFQTFKVWKKLVENRKGMKVKVLRSDNSGEYTLEEFK 180
           YFV+FIDD+SR++WVY +K KS V+  FK +K  VE   G ++K LR+DN GEYT  +F 
Sbjct: 502 YFVSFIDDYSRRLWVYPIKKKSGVYSVFKEFKAQVELETGKRIKCLRTDNGGEYTDGDFL 561

Query: 181 KYLADEGIYH*LSIPERSEQNGVAERIKQ 267
            +   EGI    ++    +QNGVAER+ +
Sbjct: 562 AFCKQEGITRQFTVAHTPQQNGVAERMNR 590