BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00012796
         (2144 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ONK75729.1| uncharacterized protein A4U43_C03F19930 [Asparagu...  1020   0.0  
ref|XP_020258675.1| protein RNA-directed DNA methylation 3, part...  1019   0.0  
ref|XP_010933206.1| PREDICTED: protein RNA-directed DNA methylat...   691   0.0  
ref|XP_010933194.1| PREDICTED: protein RNA-directed DNA methylat...   691   0.0  
ref|XP_010933212.1| PREDICTED: protein RNA-directed DNA methylat...   691   0.0  
ref|XP_010933199.1| PREDICTED: protein RNA-directed DNA methylat...   691   0.0  
ref|XP_008794002.1| PREDICTED: protein RNA-directed DNA methylat...   686   0.0  
ref|XP_020091605.1| protein RNA-directed DNA methylation 3 isofo...   658   0.0  
ref|XP_020091606.1| protein RNA-directed DNA methylation 3 isofo...   658   0.0  
ref|XP_020091604.1| protein RNA-directed DNA methylation 3 isofo...   658   0.0  
ref|XP_020091602.1| protein RNA-directed DNA methylation 3 isofo...   658   0.0  
gb|AQK94717.1| Protein RNA-directed DNA methylation 3 [Zea mays]      633   0.0  
ref|XP_004961584.1| protein RNA-directed DNA methylation 3 [Seta...   650   0.0  
gb|OAY66311.1| Protein RNA-directed DNA methylation 3 [Ananas co...   649   0.0  
gb|AQK94722.1| Protein RNA-directed DNA methylation 3 [Zea mays]      627   0.0  
gb|AQK94721.1| Protein RNA-directed DNA methylation 3 [Zea mays]      627   0.0  
gb|PAN18741.1| hypothetical protein PAHAL_C02415 [Panicum hallii]     638   0.0  
gb|PAN18742.1| hypothetical protein PAHAL_C02415 [Panicum hallii]     638   0.0  
ref|XP_008656431.1| protein RNA-directed DNA methylation 3 isofo...   633   0.0  
gb|AQK87074.1| Protein RNA-directed DNA methylation 3 [Zea mays]      620   0.0  

>gb|ONK75729.1| uncharacterized protein A4U43_C03F19930 [Asparagus officinalis]
          Length = 1710

 Score = 1020 bits (2638), Expect = 0.0
 Identities = 533/765 (69%), Positives = 593/765 (77%), Gaps = 56/765 (7%)
 Frame = +3

Query: 3    VGREQQMVLCLMHKYADLQRLGTKMEIISAFALEHVKGYVYIEADKACDVVEACKGFFNI 182
            VG+EQQ+VL LMHKYADLQRLGTKM+IISAF LEHVKGYVYIEADKACDVVEACKGFFNI
Sbjct: 102  VGKEQQIVLSLMHKYADLQRLGTKMDIISAFTLEHVKGYVYIEADKACDVVEACKGFFNI 161

Query: 183  YATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYDDARKRATIKL 362
            Y+TRMGLVP+ EIPHLLS RNK C +SKGTWVRMK+GNYKGDLGQVVDYDD RK+ATIKL
Sbjct: 162  YSTRMGLVPNTEIPHLLSIRNKACILSKGTWVRMKSGNYKGDLGQVVDYDDMRKKATIKL 221

Query: 363  VPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIRRDRHTGEYFEILDGL 542
            VPRIDLQAIAKK+GGGVSLKEA VP PRLISS ELE FRSHIEIRRDRH+GE FEILDGL
Sbjct: 222  VPRIDLQAIAKKFGGGVSLKEAAVPSPRLISSHELEQFRSHIEIRRDRHSGECFEILDGL 281

Query: 543  MLKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWLSSVYNARKKMKSSEA 722
            MLKDGYLYKKVSIASIV+WGV+PSKDELLKFTEMSK EEEDVSWLSSVYN RKK+K S+ 
Sbjct: 282  MLKDGYLYKKVSIASIVYWGVEPSKDELLKFTEMSKPEEEDVSWLSSVYNVRKKIKPSKD 341

Query: 723  ADVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDG-IKILKGDTAGQEVMTIKFEDIKS 899
            +D+KG+SE+GN FNLHDLVLFGRK FGVIID+GKDG +K+L+GD  GQEV+T+K E IKS
Sbjct: 342  SDLKGSSEKGNSFNLHDLVLFGRKAFGVIIDMGKDGTMKVLRGDKEGQEVITVKAEAIKS 401

Query: 900  RCVDKMFTASDRHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTLFIYDENQEENSGLFC 1079
            +CVDKMFTASDRHRKTI IND +KV +GPLEGR+GT  HMYKGTLFIYDE+QE NSG+FC
Sbjct: 402  QCVDKMFTASDRHRKTICINDIIKVLEGPLEGRQGTACHMYKGTLFIYDESQEGNSGIFC 461

Query: 1080 AKSDLCENITPPKDSSFRKGGNKSSSSFNQSPVRSCEQEDSSHTFRNRRSESNQPFSIGQ 1259
             KSDLCE ITP KD SF K GNK+SSSF+Q PV S EQEDSS + RNRR ESNQ FS+GQ
Sbjct: 462  TKSDLCEKITPAKD-SFGK-GNKASSSFSQDPVISSEQEDSSFS-RNRRRESNQIFSVGQ 518

Query: 1260 TLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKRESAAEMPSDIF 1439
            TLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITV+EQ LS PN+KR++A        
Sbjct: 519  TLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVDEQLLSDPNLKRDTAG------- 571

Query: 1440 GTQERLIGGLSGNGEQTVGAGLWDGASSSWQVLSTSTL-FANNNVQKIEQEQGADPWGSK 1616
                   GGLSGNGEQT+GA  WDG SSSWQ LSTS   F+ NN QK  QEQGADPW  +
Sbjct: 572  -------GGLSGNGEQTLGASSWDGGSSSWQDLSTSAFSFSANNDQKSGQEQGADPWAGR 624

Query: 1617 VSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGSNNSISAGD 1796
            VS  AGD + ++DPW SK+S+ AGD G +DPWGSK   AARD    ADPWGS  S+ AGD
Sbjct: 625  VSHVAGDQE-QSDPWVSKASITAGDGGSADPWGSKASLAARDDGGSADPWGSKASLPAGD 683

Query: 1797 CEQGADPWGSNKSISAG------------------------------------------- 1847
                ADPWGS  S++AG                                           
Sbjct: 684  -GGSADPWGSKTSLAAGEGSSADPWGSKASLAAREGGSADPSGNKASLAAGDGGSADPWG 742

Query: 1848 --------DQGGTDPWGSKLLPVARDKEQGADAWGRNISGAST--DKEERADPWGGKTAL 1997
                    D G  DPWG+KL P AR++EQG D WG +I+G +T  + + RADPWGGKT  
Sbjct: 743  SKQTPGTRDGGSADPWGTKLTPGAREQEQGVDPWGSSIAGTTTADNNKPRADPWGGKTTH 802

Query: 1998 GDSSHSDKAFDSWVKVSGTSGEMNS-WNKSEGGGFEKDGDGWNRP 2129
            G SSHSDK FDSW K S  SGE NS WNK+EG G EKDGDGWN+P
Sbjct: 803  GGSSHSDKTFDSWAKASTASGEENSVWNKTEGVGCEKDGDGWNKP 847



 Score =  137 bits (345), Expect = 2e-29
 Identities = 96/274 (35%), Positives = 126/274 (45%), Gaps = 46/274 (16%)
 Frame = +3

Query: 1461 GGLSGNGEQTVGAGLWDGASSSWQVLSTST-----LFANNNVQKIEQEQGADPWGSKVSL 1625
            GG  G+G    G G W G+ ++ +     +       +  +  + EQE+GA PWGS V+ 
Sbjct: 1283 GGSWGSGR---GRGQWGGSGTATEENQDKSGEFGGWGSGKSWNQKEQERGAGPWGSSVAG 1339

Query: 1626 AAGDHKPEADPWGSKS--------------------------SVAAGDLGGS------DP 1709
            A+ D +  ADPWGSK+                          S+ A   GG       D 
Sbjct: 1340 ASTDKEQNADPWGSKATPSESNHSDKAFDSWVKASSTSGERNSLWAKTTGGGGSGKDGDG 1399

Query: 1710 WG--------SKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTD 1865
            W         S L   + D  +GA  W S +S    D  QGADPWGS  S +A D+G  D
Sbjct: 1400 WNKSSTKTISSTLGMISPDQGEGAATWASGSS---RDKTQGADPWGSKASPAAKDKGEAD 1456

Query: 1866 PWGSKLLPVARDKEQGADAWGRNISGAS-TDKEERADPWGGKTALGDSSHSDKAFDSWVK 2042
            PWG KL   ARD  QGADAWG   +  S  DKE++AD WG K A GDSS++         
Sbjct: 1457 PWGGKLAASARDPGQGADAWGSKAAAPSRADKEQKADAWGSKAAPGDSSNN--------- 1507

Query: 2043 VSGTSGEMNSWNKSEGGGFEKDGDGWNRPFVKTT 2144
                  + + WNK  G G  KDGDGW++    +T
Sbjct: 1508 ------QNSPWNKVAGEGSGKDGDGWSKAATYST 1535



 Score =  129 bits (323), Expect = 8e-27
 Identities = 76/223 (34%), Positives = 108/223 (48%), Gaps = 35/223 (15%)
 Frame = +3

Query: 1581 EQEQGADPWGSKVS--LAAGDHKPEADPWG------------------SKSSVAAGDLGG 1700
            EQEQG DPWGS ++    A ++KP ADPWG                  +K+S A+G+   
Sbjct: 768  EQEQGVDPWGSSIAGTTTADNNKPRADPWGGKTTHGGSSHSDKTFDSWAKASTASGEENS 827

Query: 1701 -------------SDPWGSKLVPAA-RDHKQGADPWGSNNSISAGDCEQGADPWGSNKSI 1838
                          D W      ++    ++GAD W S    +A D  +G D WGS  S+
Sbjct: 828  VWNKTEGVGCEKDGDGWNKPSASSSFSGRERGADQWESKVPAAAKDHARGVDAWGSKASV 887

Query: 1839 SAGDQGGTDPWGSKLLPVARDKE-QGADAWGRNISGASTDKEERADPWGGKTALGDSSHS 2015
            +  DQGG DPW SK+    R ++ QG D W  N++ A+ DKE++ D W  K AL  +S  
Sbjct: 888  ANKDQGGEDPWASKVTAGVRAEQGQGTDPWVSNVAVATRDKEQKFDTWSSKAALAPNSVG 947

Query: 2016 DKAFDSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRPFVKTT 2144
            D              + +SW+K+ GGG  +DGD W++P  K T
Sbjct: 948  D--------------QNSSWDKAAGGGSGEDGDSWSKPSCKGT 976



 Score =  120 bits (301), Expect = 4e-24
 Identities = 72/185 (38%), Positives = 96/185 (51%), Gaps = 6/185 (3%)
 Frame = +3

Query: 1605 WGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHK-QGADPWGSNNS 1781
            WG      AGD   +           +G  GG   +G +      D++ +    WGS   
Sbjct: 1232 WGRYGGRGAGDGDNQDRQGDYGGGWESGRGGGRGRYGERGGTGNEDNQDRTGGSWGSG-- 1289

Query: 1782 ISAGDCEQGADPWGSNKSISAGDQ---GGTDPWGSKLLPVARDKEQGADAWGRNISGAST 1952
                   +G   WG + + +  +Q   G    WGS      +++E+GA  WG +++GAST
Sbjct: 1290 -------RGRGQWGGSGTATEENQDKSGEFGGWGSGKSWNQKEQERGAGPWGSSVAGAST 1342

Query: 1953 DKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGEMNS-WNKSEGGGFE-KDGDGWNR 2126
            DKE+ ADPWG K    +S+HSDKAFDSWVK S TSGE NS W K+ GGG   KDGDGWN+
Sbjct: 1343 DKEQNADPWGSKATPSESNHSDKAFDSWVKASSTSGERNSLWAKTTGGGGSGKDGDGWNK 1402

Query: 2127 PFVKT 2141
               KT
Sbjct: 1403 SSTKT 1407



 Score =  109 bits (273), Expect = 9e-21
 Identities = 71/222 (31%), Positives = 101/222 (45%), Gaps = 7/222 (3%)
 Frame = +3

Query: 1485 QTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWG 1664
            +T G G  +     W   S S+ F+        +E+GAD W SKV  AA DH    D WG
Sbjct: 831  KTEGVGC-EKDGDGWNKPSASSSFSG-------RERGADQWESKVPAAAKDHARGVDAWG 882

Query: 1665 SKSSVAAGDLGGSDPWGSKLVPAAR-DHKQGADPWGSNNSISAGDCEQGADPWGSNKSI- 1838
            SK+SVA  D GG DPW SK+    R +  QG DPW SN +++  D EQ  D W S  ++ 
Sbjct: 883  SKASVANKDQGGEDPWASKVTAGVRAEQGQGTDPWVSNVAVATRDKEQKFDTWSSKAALA 942

Query: 1839 --SAGDQGGTDPWGSKLLPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSH 2012
              S GDQ  +  W            +  D+W +     +T     +     +TA   +  
Sbjct: 943  PNSVGDQNSS--WDK---AAGGGSGEDGDSWSKPSCKGTTVAVNNSSSSSWETAAIGTKS 997

Query: 2013 SDKAF---DSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRP 2129
            ++K      SW K   +S   + W+ + G   + + DGWN P
Sbjct: 998  AEKQEGEPSSWDKAKVSSDGQSGWDMAAGSSIKNNTDGWNNP 1039


>ref|XP_020258675.1| protein RNA-directed DNA methylation 3, partial [Asparagus
            officinalis]
          Length = 1734

 Score = 1019 bits (2634), Expect = 0.0
 Identities = 536/768 (69%), Positives = 594/768 (77%), Gaps = 59/768 (7%)
 Frame = +3

Query: 3    VGREQQMVLCLMHKYADLQRLGTKMEIISAFALEHVKGYVYIEADKACDVVEACKGFFNI 182
            VG+EQQ+VL LMHKYADLQRLGTKM+IISAF LEHVKGYVYIEADKACDVVEACKGFFNI
Sbjct: 121  VGKEQQIVLSLMHKYADLQRLGTKMDIISAFTLEHVKGYVYIEADKACDVVEACKGFFNI 180

Query: 183  YATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYDDARKRATIKL 362
            Y+TRMGLVP+ EIPHLLS RNK C +SKGTWVRMK+GNYKGDLGQVVDYDD RK+ATIKL
Sbjct: 181  YSTRMGLVPNTEIPHLLSIRNKACILSKGTWVRMKSGNYKGDLGQVVDYDDMRKKATIKL 240

Query: 363  VPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIRRDRHTGEYFEILDGL 542
            VPRIDLQAIAKK+GGGVSLKEA VP PRLISS ELE FRSHIEIRRDRH+GE FEILDGL
Sbjct: 241  VPRIDLQAIAKKFGGGVSLKEAAVPSPRLISSHELEQFRSHIEIRRDRHSGECFEILDGL 300

Query: 543  MLKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWLSSVYNARKKMKSSEA 722
            MLKDGYLYKKVSIASIV+WGV+PSKDELLKFTEMSK EEEDVSWLSSVYN RKK+K S+ 
Sbjct: 301  MLKDGYLYKKVSIASIVYWGVEPSKDELLKFTEMSKPEEEDVSWLSSVYNVRKKIKPSKD 360

Query: 723  ADVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDG-IKILKGDTAGQEVMTIKFEDIKS 899
            +D+KG+SE+GN FNLHDLVLFGRK FGVIID+GKDG +K+L+GD  GQEV+T+K E IKS
Sbjct: 361  SDLKGSSEKGNSFNLHDLVLFGRKAFGVIIDMGKDGTMKVLRGDKEGQEVITVKAEAIKS 420

Query: 900  RCVDKMFTASDRHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTLFIYDENQEENSGLFC 1079
            +CVDKMFTASDRHRKTI IND +KV +GPLEGR+GT  HMYKGTLFIYDE+QE NSG+FC
Sbjct: 421  QCVDKMFTASDRHRKTICINDIIKVLEGPLEGRQGTACHMYKGTLFIYDESQEGNSGIFC 480

Query: 1080 AKSDLCENITPPKDSSFRKGGNKSSSSFNQSPVRSCEQEDSSHTF-RNRRSESNQPFSIG 1256
             KSDLCE ITP KDS F KG NK+SSSF+Q PV S EQEDSS TF RNRR ESNQ FS+G
Sbjct: 481  TKSDLCEKITPAKDS-FGKG-NKASSSFSQDPVISSEQEDSSCTFSRNRRRESNQIFSVG 538

Query: 1257 QTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKRESAAEMPSDI 1436
            QTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITV+EQ LS PN+KR++A       
Sbjct: 539  QTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVDEQLLSDPNLKRDTAG------ 592

Query: 1437 FGTQERLIGGLSGNGEQTVGAGLWDGASSSWQVLSTSTL-FANNNVQKIEQEQGADPWGS 1613
                    GGLSGNGEQT+GA  WDG SSSWQ LSTS   F+ NN QK  QEQGADPW  
Sbjct: 593  --------GGLSGNGEQTLGASSWDGGSSSWQDLSTSAFSFSANNDQKSGQEQGADPWAG 644

Query: 1614 KVSLAAGDHKPEADPWGSKSSVAAGDLGGS-DPWGSKLVPAARDHKQGADPWGSNNSISA 1790
            +VS  AGD + ++DPW SK+S+ AG  GGS DPWGSK   AARD    ADPWGS  S+ A
Sbjct: 645  RVSHVAGDQE-QSDPWVSKASITAGADGGSADPWGSKASLAARDDGGSADPWGSKASLPA 703

Query: 1791 GDCEQGADPWGSNKSISAG----------------------------------------- 1847
            GD    ADPWGS  S++AG                                         
Sbjct: 704  GD-GGSADPWGSKTSLAAGAEGSSADPWGSKASLAAREGGSADPSGNKASLAAGDGGSAD 762

Query: 1848 -----------DQGGTDPWGSKLLPVARDKEQGADAWGRNISGAST--DKEERADPWGGK 1988
                       D G  DPWG+KL P AR++EQG D WG +I+G +T  + + RADPWGGK
Sbjct: 763  PWGSKQTPGTRDGGSADPWGTKLTPGAREQEQGVDPWGSSIAGTTTADNNKPRADPWGGK 822

Query: 1989 TALGDSSHSDKAFDSWVKVSGTSGEMNS-WNKSEGGGFEKDGDGWNRP 2129
            T  G SSHSDK FDSW K S  SGE NS WNK+EG G EKDGDGWN+P
Sbjct: 823  TTHGGSSHSDKTFDSWAKASTASGEENSVWNKTEGVGCEKDGDGWNKP 870



 Score =  132 bits (333), Expect = 5e-28
 Identities = 96/275 (34%), Positives = 126/275 (45%), Gaps = 47/275 (17%)
 Frame = +3

Query: 1461 GGLSGNGEQTVGAGLWDGASSSWQVLSTST-----LFANNNVQKIEQEQGADPWGSKVSL 1625
            GG  G+G    G G W G+ ++ +     +       +  +  + EQE+GA PWGS V+ 
Sbjct: 1306 GGSWGSGR---GRGQWGGSGTATEENQDKSGEFGGWGSGKSWNQKEQERGAGPWGSSVAG 1362

Query: 1626 AAGDHKPEADPWGSKS--------------------------SVAAGDLGGS------DP 1709
            A+ D +  ADPWGSK+                          S+ A   GG       D 
Sbjct: 1363 ASTDKEQNADPWGSKATPSESNHSDKAFDSWVKASSTSGERNSLWAKTTGGGGSGKDGDG 1422

Query: 1710 WG--------SKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTD 1865
            W         S L   + D  +GA  W S +S    D  QGADPWGS  S +A D+G  D
Sbjct: 1423 WNKSSTKTISSTLGMISPDQGEGAATWASGSS---RDKTQGADPWGSKASPAAKDKGEAD 1479

Query: 1866 PWGSKLLPVAR-DKEQGADAWGRNISGAS-TDKEERADPWGGKTALGDSSHSDKAFDSWV 2039
            PWG KL   AR D  QGADAWG   +  S  DKE++AD WG K A GDSS++        
Sbjct: 1480 PWGGKLAASARADPGQGADAWGSKAAAPSRADKEQKADAWGSKAAPGDSSNN-------- 1531

Query: 2040 KVSGTSGEMNSWNKSEGGGFEKDGDGWNRPFVKTT 2144
                   + + WNK  G G  KDGDGW++    +T
Sbjct: 1532 -------QNSPWNKVAGEGSGKDGDGWSKAATYST 1559



 Score =  129 bits (323), Expect = 8e-27
 Identities = 76/223 (34%), Positives = 108/223 (48%), Gaps = 35/223 (15%)
 Frame = +3

Query: 1581 EQEQGADPWGSKVS--LAAGDHKPEADPWG------------------SKSSVAAGDLGG 1700
            EQEQG DPWGS ++    A ++KP ADPWG                  +K+S A+G+   
Sbjct: 791  EQEQGVDPWGSSIAGTTTADNNKPRADPWGGKTTHGGSSHSDKTFDSWAKASTASGEENS 850

Query: 1701 -------------SDPWGSKLVPAA-RDHKQGADPWGSNNSISAGDCEQGADPWGSNKSI 1838
                          D W      ++    ++GAD W S    +A D  +G D WGS  S+
Sbjct: 851  VWNKTEGVGCEKDGDGWNKPSASSSFSGRERGADQWESKVPAAAKDHARGVDAWGSKASV 910

Query: 1839 SAGDQGGTDPWGSKLLPVARDKE-QGADAWGRNISGASTDKEERADPWGGKTALGDSSHS 2015
            +  DQGG DPW SK+    R ++ QG D W  N++ A+ DKE++ D W  K AL  +S  
Sbjct: 911  ANKDQGGEDPWASKVTAGVRAEQGQGTDPWVSNVAVATRDKEQKFDTWSSKAALAPNSVG 970

Query: 2016 DKAFDSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRPFVKTT 2144
            D              + +SW+K+ GGG  +DGD W++P  K T
Sbjct: 971  D--------------QNSSWDKAAGGGSGEDGDSWSKPSCKGT 999



 Score =  120 bits (301), Expect = 4e-24
 Identities = 72/185 (38%), Positives = 96/185 (51%), Gaps = 6/185 (3%)
 Frame = +3

Query: 1605 WGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHK-QGADPWGSNNS 1781
            WG      AGD   +           +G  GG   +G +      D++ +    WGS   
Sbjct: 1255 WGRYGGRGAGDGDNQDRQGDYGGGWESGRGGGRGRYGERGGTGNEDNQDRTGGSWGSG-- 1312

Query: 1782 ISAGDCEQGADPWGSNKSISAGDQ---GGTDPWGSKLLPVARDKEQGADAWGRNISGAST 1952
                   +G   WG + + +  +Q   G    WGS      +++E+GA  WG +++GAST
Sbjct: 1313 -------RGRGQWGGSGTATEENQDKSGEFGGWGSGKSWNQKEQERGAGPWGSSVAGAST 1365

Query: 1953 DKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGEMNS-WNKSEGGGFE-KDGDGWNR 2126
            DKE+ ADPWG K    +S+HSDKAFDSWVK S TSGE NS W K+ GGG   KDGDGWN+
Sbjct: 1366 DKEQNADPWGSKATPSESNHSDKAFDSWVKASSTSGERNSLWAKTTGGGGSGKDGDGWNK 1425

Query: 2127 PFVKT 2141
               KT
Sbjct: 1426 SSTKT 1430



 Score =  109 bits (273), Expect = 9e-21
 Identities = 71/222 (31%), Positives = 101/222 (45%), Gaps = 7/222 (3%)
 Frame = +3

Query: 1485 QTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWG 1664
            +T G G  +     W   S S+ F+        +E+GAD W SKV  AA DH    D WG
Sbjct: 854  KTEGVGC-EKDGDGWNKPSASSSFSG-------RERGADQWESKVPAAAKDHARGVDAWG 905

Query: 1665 SKSSVAAGDLGGSDPWGSKLVPAAR-DHKQGADPWGSNNSISAGDCEQGADPWGSNKSI- 1838
            SK+SVA  D GG DPW SK+    R +  QG DPW SN +++  D EQ  D W S  ++ 
Sbjct: 906  SKASVANKDQGGEDPWASKVTAGVRAEQGQGTDPWVSNVAVATRDKEQKFDTWSSKAALA 965

Query: 1839 --SAGDQGGTDPWGSKLLPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSH 2012
              S GDQ  +  W            +  D+W +     +T     +     +TA   +  
Sbjct: 966  PNSVGDQNSS--WDK---AAGGGSGEDGDSWSKPSCKGTTVAVNNSSSSSWETAAIGTKS 1020

Query: 2013 SDKAF---DSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRP 2129
            ++K      SW K   +S   + W+ + G   + + DGWN P
Sbjct: 1021 AEKQEGEPSSWDKAKVSSDGQSGWDMAAGSSIKNNTDGWNNP 1062


>ref|XP_010933206.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X3 [Elaeis
            guineensis]
          Length = 2067

 Score =  691 bits (1784), Expect = 0.0
 Identities = 387/752 (51%), Positives = 487/752 (64%), Gaps = 45/752 (5%)
 Frame = +3

Query: 6    GREQQMVLCLMHKYADLQRLGTKMEIISAFALEHVKGYVYIEADKACDVVEACKGFFNIY 185
            GRE+Q+  C M KY DL   G+KM+IISAFAL+HVKGYV+IEADK CD++EACKGF+++Y
Sbjct: 160  GRERQIAFCFMQKYIDLNNYGSKMQIISAFALDHVKGYVFIEADKECDIIEACKGFYSVY 219

Query: 186  ATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYDDARKRATIKLV 365
            ++++  VP  E+P L S+R+K C +S+G+WVRMK+G YKGDL QVV  DD +K+  +KL+
Sbjct: 220  SSKINRVPGSEVPQLFSSRSKSCEVSEGSWVRMKSGKYKGDLAQVVAVDDGQKKVMVKLI 279

Query: 366  PRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIRRDRHTGEYFEILDGLM 545
            PR+DLQAI+KK+GGG+SLK+A VP PRLISS ELE FR HIE+RRDR TGE F+ILDGLM
Sbjct: 280  PRVDLQAISKKFGGGISLKQAAVPAPRLISSHELEMFRPHIEVRRDRQTGEIFDILDGLM 339

Query: 546  LKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWLSSVYNARKKMKSSEAA 725
            LKDG+LYK+VSI S++ W VQPS  ELLKF+ +SK  +ED++W+SSVY  R KM+ SEAA
Sbjct: 340  LKDGFLYKRVSIGSVICWAVQPSDMELLKFSNVSKVGDEDLTWVSSVYRGRNKMRLSEAA 399

Query: 726  DVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKILKGDTAGQEVMTIKFEDIKSRC 905
            D K  +++GNGFNLHD VLFG K FGVII + KDG +ILKG   G EV+T+K +DIKS C
Sbjct: 400  DQKVLAKKGNGFNLHDFVLFGHKAFGVIIAVEKDGFRILKGGMEGPEVVTVKVQDIKSAC 459

Query: 906  VDKMFTASDRHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTLFIYDENQEENSGLFCAK 1085
            VDKMFTASDR+ KTI IND+VKV +GPL+ R+G VRHMYKGTLFIYDEN+ ENSG FCAK
Sbjct: 460  VDKMFTASDRYMKTISINDTVKVLEGPLQDRQGIVRHMYKGTLFIYDENETENSGFFCAK 519

Query: 1086 SDLCENITPPKDSSFRKGGNKSSSSFNQSPVRSCEQEDSSHTFR-NRRSESNQPFSIGQT 1262
            S  CEN+   K       G KSS SF Q P+RS E++D SH F  +R+S+ +Q FSIGQT
Sbjct: 520  SASCENLKELK-------GEKSSHSFFQPPMRSSEEQDRSHGFNWHRQSDRDQIFSIGQT 572

Query: 1263 LRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKRESAAEMPSDIFG 1442
            LRIRKGPLKGYLCRVV +YRSDVTVKLDSLVKVITVE ++LS+PN+KR+ +A   S+ FG
Sbjct: 573  LRIRKGPLKGYLCRVVGVYRSDVTVKLDSLVKVITVEAEYLSVPNVKRDDSAATTSNTFG 632

Query: 1443 TQERLIGGLSGNGEQTVGAGLWDGA-----SSSWQVL-STSTLFANNNVQKIEQEQGADP 1604
            TQE    GLS  G Q V  G WD +       SWQ    +++   +NN  K ++   ADP
Sbjct: 633  TQE----GLSIAG-QHVDNGQWDASVPSFGRGSWQAFPGSNSSDVDNNDHKSDEGHDADP 687

Query: 1605 WGSKVSLAAGDHKPEADPWGSKSSV-----AAGDLGGSD-PW-----GSKLVPAARDHKQ 1751
            WGSKV   A      AD W S  ++     AAG  G  D  W     G K+   AR+  +
Sbjct: 688  WGSKVLSGA-----RADAWHSSKAMDGWGKAAGSSGEQDSQWNMTAAGDKVTDQARNCIE 742

Query: 1752 GADPWGSN-----------------NSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSK 1880
             AD W                     S  AG   +G    G+N   +    G  D     
Sbjct: 743  DADGWNGKALAKTSTEIDESKKPKPQSSDAGGWGRGDFGSGNNLDPTENVSGNWDKQRDD 802

Query: 1881 LLPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHS---------DKAFDS 2033
             L  +R    G   W R    A+T K++      GK    D S++         DKA   
Sbjct: 803  DLGDSRKNSDGVSGWDR----AATSKDK------GKDLSWDQSNNWTHPEVVSIDKASCW 852

Query: 2034 WVKVSG-TSGEMNSWNKSEGGGFEKDGDGWNR 2126
             VK  G  S E +SW K+     +   + W +
Sbjct: 853  DVKGKGIISNEDDSWGKAARFREKNTNEDWGK 884


>ref|XP_010933194.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X1 [Elaeis
            guineensis]
          Length = 2069

 Score =  691 bits (1784), Expect = 0.0
 Identities = 387/752 (51%), Positives = 487/752 (64%), Gaps = 45/752 (5%)
 Frame = +3

Query: 6    GREQQMVLCLMHKYADLQRLGTKMEIISAFALEHVKGYVYIEADKACDVVEACKGFFNIY 185
            GRE+Q+  C M KY DL   G+KM+IISAFAL+HVKGYV+IEADK CD++EACKGF+++Y
Sbjct: 162  GRERQIAFCFMQKYIDLNNYGSKMQIISAFALDHVKGYVFIEADKECDIIEACKGFYSVY 221

Query: 186  ATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYDDARKRATIKLV 365
            ++++  VP  E+P L S+R+K C +S+G+WVRMK+G YKGDL QVV  DD +K+  +KL+
Sbjct: 222  SSKINRVPGSEVPQLFSSRSKSCEVSEGSWVRMKSGKYKGDLAQVVAVDDGQKKVMVKLI 281

Query: 366  PRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIRRDRHTGEYFEILDGLM 545
            PR+DLQAI+KK+GGG+SLK+A VP PRLISS ELE FR HIE+RRDR TGE F+ILDGLM
Sbjct: 282  PRVDLQAISKKFGGGISLKQAAVPAPRLISSHELEMFRPHIEVRRDRQTGEIFDILDGLM 341

Query: 546  LKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWLSSVYNARKKMKSSEAA 725
            LKDG+LYK+VSI S++ W VQPS  ELLKF+ +SK  +ED++W+SSVY  R KM+ SEAA
Sbjct: 342  LKDGFLYKRVSIGSVICWAVQPSDMELLKFSNVSKVGDEDLTWVSSVYRGRNKMRLSEAA 401

Query: 726  DVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKILKGDTAGQEVMTIKFEDIKSRC 905
            D K  +++GNGFNLHD VLFG K FGVII + KDG +ILKG   G EV+T+K +DIKS C
Sbjct: 402  DQKVLAKKGNGFNLHDFVLFGHKAFGVIIAVEKDGFRILKGGMEGPEVVTVKVQDIKSAC 461

Query: 906  VDKMFTASDRHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTLFIYDENQEENSGLFCAK 1085
            VDKMFTASDR+ KTI IND+VKV +GPL+ R+G VRHMYKGTLFIYDEN+ ENSG FCAK
Sbjct: 462  VDKMFTASDRYMKTISINDTVKVLEGPLQDRQGIVRHMYKGTLFIYDENETENSGFFCAK 521

Query: 1086 SDLCENITPPKDSSFRKGGNKSSSSFNQSPVRSCEQEDSSHTFR-NRRSESNQPFSIGQT 1262
            S  CEN+   K       G KSS SF Q P+RS E++D SH F  +R+S+ +Q FSIGQT
Sbjct: 522  SASCENLKELK-------GEKSSHSFFQPPMRSSEEQDRSHGFNWHRQSDRDQIFSIGQT 574

Query: 1263 LRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKRESAAEMPSDIFG 1442
            LRIRKGPLKGYLCRVV +YRSDVTVKLDSLVKVITVE ++LS+PN+KR+ +A   S+ FG
Sbjct: 575  LRIRKGPLKGYLCRVVGVYRSDVTVKLDSLVKVITVEAEYLSVPNVKRDDSAATTSNTFG 634

Query: 1443 TQERLIGGLSGNGEQTVGAGLWDGA-----SSSWQVL-STSTLFANNNVQKIEQEQGADP 1604
            TQE    GLS  G Q V  G WD +       SWQ    +++   +NN  K ++   ADP
Sbjct: 635  TQE----GLSIAG-QHVDNGQWDASVPSFGRGSWQAFPGSNSSDVDNNDHKSDEGHDADP 689

Query: 1605 WGSKVSLAAGDHKPEADPWGSKSSV-----AAGDLGGSD-PW-----GSKLVPAARDHKQ 1751
            WGSKV   A      AD W S  ++     AAG  G  D  W     G K+   AR+  +
Sbjct: 690  WGSKVLSGA-----RADAWHSSKAMDGWGKAAGSSGEQDSQWNMTAAGDKVTDQARNCIE 744

Query: 1752 GADPWGSN-----------------NSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSK 1880
             AD W                     S  AG   +G    G+N   +    G  D     
Sbjct: 745  DADGWNGKALAKTSTEIDESKKPKPQSSDAGGWGRGDFGSGNNLDPTENVSGNWDKQRDD 804

Query: 1881 LLPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHS---------DKAFDS 2033
             L  +R    G   W R    A+T K++      GK    D S++         DKA   
Sbjct: 805  DLGDSRKNSDGVSGWDR----AATSKDK------GKDLSWDQSNNWTHPEVVSIDKASCW 854

Query: 2034 WVKVSG-TSGEMNSWNKSEGGGFEKDGDGWNR 2126
             VK  G  S E +SW K+     +   + W +
Sbjct: 855  DVKGKGIISNEDDSWGKAARFREKNTNEDWGK 886


>ref|XP_010933212.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X4 [Elaeis
            guineensis]
          Length = 2066

 Score =  691 bits (1782), Expect = 0.0
 Identities = 385/752 (51%), Positives = 485/752 (64%), Gaps = 45/752 (5%)
 Frame = +3

Query: 6    GREQQMVLCLMHKYADLQRLGTKMEIISAFALEHVKGYVYIEADKACDVVEACKGFFNIY 185
            GRE+Q+  C M KY DL   G+KM+IISAFAL+HVKGYV+IEADK CD++EACKGF+++Y
Sbjct: 160  GRERQIAFCFMQKYIDLNNYGSKMQIISAFALDHVKGYVFIEADKECDIIEACKGFYSVY 219

Query: 186  ATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYDDARKRATIKLV 365
            ++++  VP  E+P L S+R+K C +S+G+WVRMK+G YKGDL QVV  DD +K+  +KL+
Sbjct: 220  SSKINRVPGSEVPQLFSSRSKSCEVSEGSWVRMKSGKYKGDLAQVVAVDDGQKKVMVKLI 279

Query: 366  PRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIRRDRHTGEYFEILDGLM 545
            PR+DLQAI+KK+GGG+SLK+A VP PRLISS ELE FR HIE+RRDR TGE F+ILDGLM
Sbjct: 280  PRVDLQAISKKFGGGISLKQAAVPAPRLISSHELEMFRPHIEVRRDRQTGEIFDILDGLM 339

Query: 546  LKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWLSSVYNARKKMKSSEAA 725
            LKDG+LYK+VSI S++ W VQPS  ELLKF+ +SK  +ED++W+SSVY  R KM+ SEAA
Sbjct: 340  LKDGFLYKRVSIGSVICWAVQPSDMELLKFSNVSKVGDEDLTWVSSVYRGRNKMRLSEAA 399

Query: 726  DVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKILKGDTAGQEVMTIKFEDIKSRC 905
            D K  +++GNGFNLHD VLFG K FGVII + KDG +ILKG   G EV+T+K +DIKS C
Sbjct: 400  DQKVLAKKGNGFNLHDFVLFGHKAFGVIIAVEKDGFRILKGGMEGPEVVTVKVQDIKSAC 459

Query: 906  VDKMFTASDRHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTLFIYDENQEENSGLFCAK 1085
            VDKMFTASDR+ KTI IND+VKV +GPL+ R+G VRHMYKGTLFIYDEN+ ENSG FCAK
Sbjct: 460  VDKMFTASDRYMKTISINDTVKVLEGPLQDRQGIVRHMYKGTLFIYDENETENSGFFCAK 519

Query: 1086 SDLCENITPPKDSSFRKGGNKSSSSFNQSPVRSCEQEDSSHTFR-NRRSESNQPFSIGQT 1262
            S  CEN+   K       G KSS SF Q P+RS E++D SH F  +R+S+ +Q FSIGQT
Sbjct: 520  SASCENLKELK-------GEKSSHSFFQPPMRSSEEQDRSHGFNWHRQSDRDQIFSIGQT 572

Query: 1263 LRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKRESAAEMPSDIFG 1442
            LRIRKGPLKGYLCRVV +YRSDVTVKLDSLVKVITVE ++LS+PN+KR+ +A   S+ FG
Sbjct: 573  LRIRKGPLKGYLCRVVGVYRSDVTVKLDSLVKVITVEAEYLSVPNVKRDDSAATTSNTFG 632

Query: 1443 TQERLIGGLSGNGEQTVGAGLWDGA-----SSSWQVL-STSTLFANNNVQKIEQEQGADP 1604
            TQE L  G      Q V  G WD +       SWQ    +++   +NN  K ++   ADP
Sbjct: 633  TQEGLSIG------QHVDNGQWDASVPSFGRGSWQAFPGSNSSDVDNNDHKSDEGHDADP 686

Query: 1605 WGSKVSLAAGDHKPEADPWGSKSSV-----AAGDLGGSD-PW-----GSKLVPAARDHKQ 1751
            WGSKV   A      AD W S  ++     AAG  G  D  W     G K+   AR+  +
Sbjct: 687  WGSKVLSGA-----RADAWHSSKAMDGWGKAAGSSGEQDSQWNMTAAGDKVTDQARNCIE 741

Query: 1752 GADPWGSN-----------------NSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSK 1880
             AD W                     S  AG   +G    G+N   +    G  D     
Sbjct: 742  DADGWNGKALAKTSTEIDESKKPKPQSSDAGGWGRGDFGSGNNLDPTENVSGNWDKQRDD 801

Query: 1881 LLPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHS---------DKAFDS 2033
             L  +R    G   W R    A+T K++      GK    D S++         DKA   
Sbjct: 802  DLGDSRKNSDGVSGWDR----AATSKDK------GKDLSWDQSNNWTHPEVVSIDKASCW 851

Query: 2034 WVKVSG-TSGEMNSWNKSEGGGFEKDGDGWNR 2126
             VK  G  S E +SW K+     +   + W +
Sbjct: 852  DVKGKGIISNEDDSWGKAARFREKNTNEDWGK 883


>ref|XP_010933199.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X2 [Elaeis
            guineensis]
          Length = 2068

 Score =  691 bits (1782), Expect = 0.0
 Identities = 385/752 (51%), Positives = 485/752 (64%), Gaps = 45/752 (5%)
 Frame = +3

Query: 6    GREQQMVLCLMHKYADLQRLGTKMEIISAFALEHVKGYVYIEADKACDVVEACKGFFNIY 185
            GRE+Q+  C M KY DL   G+KM+IISAFAL+HVKGYV+IEADK CD++EACKGF+++Y
Sbjct: 162  GRERQIAFCFMQKYIDLNNYGSKMQIISAFALDHVKGYVFIEADKECDIIEACKGFYSVY 221

Query: 186  ATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYDDARKRATIKLV 365
            ++++  VP  E+P L S+R+K C +S+G+WVRMK+G YKGDL QVV  DD +K+  +KL+
Sbjct: 222  SSKINRVPGSEVPQLFSSRSKSCEVSEGSWVRMKSGKYKGDLAQVVAVDDGQKKVMVKLI 281

Query: 366  PRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIRRDRHTGEYFEILDGLM 545
            PR+DLQAI+KK+GGG+SLK+A VP PRLISS ELE FR HIE+RRDR TGE F+ILDGLM
Sbjct: 282  PRVDLQAISKKFGGGISLKQAAVPAPRLISSHELEMFRPHIEVRRDRQTGEIFDILDGLM 341

Query: 546  LKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWLSSVYNARKKMKSSEAA 725
            LKDG+LYK+VSI S++ W VQPS  ELLKF+ +SK  +ED++W+SSVY  R KM+ SEAA
Sbjct: 342  LKDGFLYKRVSIGSVICWAVQPSDMELLKFSNVSKVGDEDLTWVSSVYRGRNKMRLSEAA 401

Query: 726  DVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKILKGDTAGQEVMTIKFEDIKSRC 905
            D K  +++GNGFNLHD VLFG K FGVII + KDG +ILKG   G EV+T+K +DIKS C
Sbjct: 402  DQKVLAKKGNGFNLHDFVLFGHKAFGVIIAVEKDGFRILKGGMEGPEVVTVKVQDIKSAC 461

Query: 906  VDKMFTASDRHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTLFIYDENQEENSGLFCAK 1085
            VDKMFTASDR+ KTI IND+VKV +GPL+ R+G VRHMYKGTLFIYDEN+ ENSG FCAK
Sbjct: 462  VDKMFTASDRYMKTISINDTVKVLEGPLQDRQGIVRHMYKGTLFIYDENETENSGFFCAK 521

Query: 1086 SDLCENITPPKDSSFRKGGNKSSSSFNQSPVRSCEQEDSSHTFR-NRRSESNQPFSIGQT 1262
            S  CEN+   K       G KSS SF Q P+RS E++D SH F  +R+S+ +Q FSIGQT
Sbjct: 522  SASCENLKELK-------GEKSSHSFFQPPMRSSEEQDRSHGFNWHRQSDRDQIFSIGQT 574

Query: 1263 LRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKRESAAEMPSDIFG 1442
            LRIRKGPLKGYLCRVV +YRSDVTVKLDSLVKVITVE ++LS+PN+KR+ +A   S+ FG
Sbjct: 575  LRIRKGPLKGYLCRVVGVYRSDVTVKLDSLVKVITVEAEYLSVPNVKRDDSAATTSNTFG 634

Query: 1443 TQERLIGGLSGNGEQTVGAGLWDGA-----SSSWQVL-STSTLFANNNVQKIEQEQGADP 1604
            TQE L  G      Q V  G WD +       SWQ    +++   +NN  K ++   ADP
Sbjct: 635  TQEGLSIG------QHVDNGQWDASVPSFGRGSWQAFPGSNSSDVDNNDHKSDEGHDADP 688

Query: 1605 WGSKVSLAAGDHKPEADPWGSKSSV-----AAGDLGGSD-PW-----GSKLVPAARDHKQ 1751
            WGSKV   A      AD W S  ++     AAG  G  D  W     G K+   AR+  +
Sbjct: 689  WGSKVLSGA-----RADAWHSSKAMDGWGKAAGSSGEQDSQWNMTAAGDKVTDQARNCIE 743

Query: 1752 GADPWGSN-----------------NSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSK 1880
             AD W                     S  AG   +G    G+N   +    G  D     
Sbjct: 744  DADGWNGKALAKTSTEIDESKKPKPQSSDAGGWGRGDFGSGNNLDPTENVSGNWDKQRDD 803

Query: 1881 LLPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHS---------DKAFDS 2033
             L  +R    G   W R    A+T K++      GK    D S++         DKA   
Sbjct: 804  DLGDSRKNSDGVSGWDR----AATSKDK------GKDLSWDQSNNWTHPEVVSIDKASCW 853

Query: 2034 WVKVSG-TSGEMNSWNKSEGGGFEKDGDGWNR 2126
             VK  G  S E +SW K+     +   + W +
Sbjct: 854  DVKGKGIISNEDDSWGKAARFREKNTNEDWGK 885


>ref|XP_008794002.1| PREDICTED: protein RNA-directed DNA methylation 3 [Phoenix
            dactylifera]
          Length = 2039

 Score =  686 bits (1770), Expect = 0.0
 Identities = 373/717 (52%), Positives = 481/717 (67%), Gaps = 6/717 (0%)
 Frame = +3

Query: 3    VGREQQMVLCLMHKYADLQRLGTKMEIISAFALEHVKGYVYIEADKACDVVEACKGFFNI 182
            VGRE+Q+  C M KY DL   G K++IISAFAL+HVKGYV+IEADK  DV EACKGF+++
Sbjct: 157  VGRERQIAFCFMQKYIDLNNFGNKIQIISAFALDHVKGYVFIEADKEYDVTEACKGFYSV 216

Query: 183  YATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYDDARKRATIKL 362
            Y++++  V   E+P L S+R+K C +S+G+WVRMK+G YKGDL QVV  DD +K+  +KL
Sbjct: 217  YSSKINRVHGSEVPQLFSSRSKSCEVSEGSWVRMKSGKYKGDLAQVVAVDDGQKKVMVKL 276

Query: 363  VPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIRRDRHTGEYFEILDGL 542
            VPR+DLQAI+KK+GGGVSLK+A VP PRLISS ELE FR HIE+RRDR TGE FEILDGL
Sbjct: 277  VPRVDLQAISKKFGGGVSLKQAAVPAPRLISSHELEMFRPHIEVRRDRQTGEIFEILDGL 336

Query: 543  MLKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWLSSVYNARKKMKSSEA 722
            MLKDG+LYK+VSI S++ WGVQPS  ELLKF+ + K  +E ++W+SSVY+ R KM+ +EA
Sbjct: 337  MLKDGFLYKRVSIGSVICWGVQPSDMELLKFSSVGKDGDEHLNWVSSVYHGRNKMRPTEA 396

Query: 723  ADVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKILKGDTAGQEVMTIKFEDIKSR 902
            AD +  +++GNGFNLHD VLFG K FGVII + KDG +ILKG   G EV+T+K +DIKS 
Sbjct: 397  ADQQVLAKKGNGFNLHDFVLFGHKAFGVIIAVEKDGFRILKGGVEGPEVVTVKIQDIKSA 456

Query: 903  CVDKMFTASDRHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTLFIYDENQEENSGLFCA 1082
            CVDKMFTASDR+ KTI IND+VKV +GPL+ ++G V+HMYKGTLFIYDEN+ ENSG FCA
Sbjct: 457  CVDKMFTASDRYMKTISINDTVKVLEGPLQDKQGIVKHMYKGTLFIYDENETENSGFFCA 516

Query: 1083 KSDLCENITPPKDSSFRKGGNKSSSSFNQSPVRSCEQEDSSHTFR-NRRSESNQPFSIGQ 1259
            KS  CEN+   K       G KSS SF+Q+P+ S E++D SH F   R++E +Q FSIGQ
Sbjct: 517  KSASCENMKESK-------GEKSSHSFSQAPMGSYEEQDRSHGFNWRRQTERDQVFSIGQ 569

Query: 1260 TLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKRESAAEMPSDIF 1439
            TLRIRKGPLKGYLCRVV +YRSDVTVK+DSLVK+ITVE ++LS+PN+KR+ +A   S+ F
Sbjct: 570  TLRIRKGPLKGYLCRVVGVYRSDVTVKVDSLVKIITVEAEYLSVPNVKRDDSAATTSNPF 629

Query: 1440 GTQERL-IGGLSGNGEQTVGAGLWDGASSSWQVLSTSTLF-ANNNVQKIEQEQGADPWGS 1613
            GTQERL IG  + NG+  VG   +     SWQ    S     +NN  K ++   ADPWGS
Sbjct: 630  GTQERLSIGQHAENGQWDVGVPSF--GRDSWQAFPASNFSDVDNNGHKADEGHDADPWGS 687

Query: 1614 KVSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAA-RDHKQGADPWGSNNSISA 1790
            KV   A      AD W S  ++        D WG     +  +D +      G   +  A
Sbjct: 688  KVISGA-----RADAWHSSKAM--------DGWGKAASSSGEQDSQWNMTAAGEKVTDQA 734

Query: 1791 GDCEQGADPWGSNKSISAGDQGGTDPWGSKLLPVARDKEQGADAWGRNISGASTDKEERA 1970
             +C + AD W + K+++   +  T+  GSK    ++ +  G   WGR   G+  +     
Sbjct: 735  RNCIEDADGW-NGKALA---KTSTEIDGSK---KSKPQSGGDGGWGRGNFGSGNN----L 783

Query: 1971 DPWGGKTALGDSSHSDKAFDSWVKVSGTSG-EMNSWNKSEGGGFEKD-GDGWNRPFV 2135
            DP    T   D   +D   DS     G SG +  + +K +G     D  + W RP V
Sbjct: 784  DPSENVTGNWDKQRADNLGDSLKNSDGVSGWDRAATSKDKGKDLSWDRSNNWTRPEV 840



 Score = 68.2 bits (165), Expect = 7e-08
 Identities = 68/243 (27%), Positives = 97/243 (39%), Gaps = 34/243 (13%)
 Frame = +3

Query: 1506 WDGA-----SSSWQVLSTSTLFANNNVQKIEQE-QGADPWGSKVSLAAGDHKPEADPWGS 1667
            WDGA     SS W    T     +    +IE+  +  D  G      + D    +  WG 
Sbjct: 1226 WDGAFQKNPSSGWAGNKTPGSGKSEGFSEIEESTENVDHQGGLNGRKSFDTGCSSG-WGG 1284

Query: 1668 KSSVAAGDLGGSDPWGS-----KLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGS-N 1829
            +SS    D  G++   S     K   + +D   G D W  +N   +G  + G D W S N
Sbjct: 1285 QSSDWKKDEAGNNSRSSPNSNWKKEASVKDAAGGGDNWNMSNR--SGRNQSGWDKWSSGN 1342

Query: 1830 KSISAGDQGGTDPWGSKLLPVARDKEQGADAWGRNISGAST-------DKEERADPWGGK 1988
            + +     G  + W S       DK+Q      + ++G           +E  ADPWG K
Sbjct: 1343 EQVGKAGAGSMEGWNSSR---PSDKKQYCVGADKTLAGNEEACRKTVGGQEHEADPWGSK 1399

Query: 1989 TALG---DSSHSDKAFDSWVKVSG------------TSGEMNSWNKSEGGGFEKDGDGWN 2123
             A G   D+ +S KA D+W K +G            T GE  + +  + G   KD DGWN
Sbjct: 1400 VAYGARGDAWNSRKAADNWGKATGLCIEEISPLSKATVGE-RAIDVGQDGDCPKDADGWN 1458

Query: 2124 RPF 2132
            R F
Sbjct: 1459 RTF 1461


>ref|XP_020091605.1| protein RNA-directed DNA methylation 3 isoform X3 [Ananas comosus]
          Length = 1714

 Score =  658 bits (1698), Expect = 0.0
 Identities = 370/743 (49%), Positives = 481/743 (64%), Gaps = 35/743 (4%)
 Frame = +3

Query: 3    VGREQQMVLCLMHKYADLQRLGTKMEIISAFALEHVKGYVYIEADKACDVVEACKGFFNI 182
            +GRE+QM  C M K+ DL  LG K++I+SAFAL+HVKG+V++EADKA DV EACKGF NI
Sbjct: 156  IGRERQMAFCFMQKFVDLDCLGNKLQIVSAFALDHVKGFVFVEADKANDVSEACKGFCNI 215

Query: 183  YATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYDDARKRATIKL 362
            Y  R+ LVP  E+ HLLS+RNK C IS+G+WVRMK+G YKGDL QVV+ DD RKR  IKL
Sbjct: 216  YPGRINLVPPSEVSHLLSSRNKSCGISQGSWVRMKSGKYKGDLAQVVNLDDGRKRVMIKL 275

Query: 363  VPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIRRDRHTGEYFEILDGL 542
            +PRIDLQAI+KK+GGG+SLK A VP PRLISS EL+ FR  IE RRDR +GE FE+LDG+
Sbjct: 276  IPRIDLQAISKKFGGGLSLKHAAVPAPRLISSHELDEFRPLIETRRDRQSGEVFEVLDGM 335

Query: 543  MLKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWLSSVYNARKKMKSSEA 722
            MLKDGY+YK VS  S+VFWGVQPS+ ELLKF+ ++K + ED+ W+SSVY+ RKK++ ++ 
Sbjct: 336  MLKDGYMYKWVSNGSVVFWGVQPSESELLKFSNVNKDDSEDLDWVSSVYSGRKKVRLTDD 395

Query: 723  ADVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKILKGDTAGQEVMTIKFEDIKSR 902
            +D    + + N + LHDLVLFG+K FGVI+ + KDG++ILKG T G  V+T++ +DIKS 
Sbjct: 396  SDNVATTSRKNEYKLHDLVLFGQKDFGVIVTVEKDGVRILKGGTEGSAVVTLRKQDIKSG 455

Query: 903  CVDKMFTASDRHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTLFIYDENQEENSGLFCA 1082
            CVDKMFTA DRH KTI +ND VKV +G LEGR+G V+H+Y+G++FIYDEN+ ENSG FCA
Sbjct: 456  CVDKMFTALDRHSKTISVNDIVKVLEGSLEGRQGIVKHLYRGSIFIYDENETENSGFFCA 515

Query: 1083 KSDLCENITPPKDS--SFRKG-GNKSSSSFNQSPVRSCEQEDSSH-TFRNRRSESNQPFS 1250
            KS+ CE I   ++S  SF    G+ S+S F++ P  S E +DSS    R R+ + +  FS
Sbjct: 516  KSESCEKIKKSRESVNSFDDNLGDGSASLFSEPPTISFENQDSSSGAGRRRQYDRDSLFS 575

Query: 1251 IGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKRESAAEMPS 1430
            IGQTLRI KGPLKGYLCRVVRI+RS+VTVKLDSLVK+ITV+ +FLS+P  KR+ +    S
Sbjct: 576  IGQTLRICKGPLKGYLCRVVRIFRSEVTVKLDSLVKIITVDAKFLSVPTRKRDDSTGAAS 635

Query: 1431 DIFGTQER-LIGGLSGNG-EQTVGAGLWDG-----ASSSWQVLSTSTLFANNNVQKIEQE 1589
            D+FGTQE   IG  S +G E   G   WD       S  WQ  S S L A  N     + 
Sbjct: 636  DLFGTQEMPSIGPFSADGTESQPGRSSWDSPLPSFGSDGWQPFSASKLSAAGNTD--NKT 693

Query: 1590 QGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWG 1769
               DPWGSKV          AD W + ++  +GD   S  W      AA      AD W 
Sbjct: 694  DDVDPWGSKVK-----SDQSADTW-ANAAAPSGDQNSS--WDKSTTNAASGQ---ADTWQ 742

Query: 1770 SNNSISAGDCEQ----GADPWGSNKSISAGDQGGTDPWGSKLLPVARDKEQGADAWGRNI 1937
            +N++  +    Q     A  W   K++ A D GG+   G+K+  +   K  G +AW +  
Sbjct: 743  NNSNDWSNKGSQKSTSDAGGWEKEKTL-ASDSGGSWGTGNKISNLDNSKTGGDNAWDK-- 799

Query: 1938 SGASTDKEE-------RADPWGGKTALGDSSHS----DKAF-----DSWVKVSGTS---G 2060
              AS DK++         + W    A+   + S     KA      D+W K  G      
Sbjct: 800  --ASNDKDKGKGSSWNEPNNWTKSEAVTSKTDSWDVKGKAIAMDDGDTWGKAKGKGIVIN 857

Query: 2061 EMNSWNKSEGGGFE-KDGDGWNR 2126
            E +SW+K++G G   K+ D W +
Sbjct: 858  EDDSWDKAKGKGIVIKEDDSWGK 880


>ref|XP_020091606.1| protein RNA-directed DNA methylation 3 isoform X4 [Ananas comosus]
          Length = 1705

 Score =  658 bits (1697), Expect = 0.0
 Identities = 370/744 (49%), Positives = 481/744 (64%), Gaps = 36/744 (4%)
 Frame = +3

Query: 3    VGREQQMVLCLMHKYADLQRLGTKMEIISAFALEHVKGYVYIEADKACDVVEACKGFFNI 182
            +GRE+QM  C M K+ DL  LG K++I+SAFAL+HVKG+V++EADKA DV EACKGF NI
Sbjct: 156  IGRERQMAFCFMQKFVDLDCLGNKLQIVSAFALDHVKGFVFVEADKANDVSEACKGFCNI 215

Query: 183  YATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYDDARKRATIKL 362
            Y  R+ LVP  E+ HLLS+RNK C IS+G+WVRMK+G YKGDL QVV+ DD RKR  IKL
Sbjct: 216  YPGRINLVPPSEVSHLLSSRNKSCGISQGSWVRMKSGKYKGDLAQVVNLDDGRKRVMIKL 275

Query: 363  VPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIRRDRHTGEYFEILDGL 542
            +PRIDLQAI+KK+GGG+SLK A VP PRLISS EL+ FR  IE RRDR +GE FE+LDG+
Sbjct: 276  IPRIDLQAISKKFGGGLSLKHAAVPAPRLISSHELDEFRPLIETRRDRQSGEVFEVLDGM 335

Query: 543  MLKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWLSSVYNARKKMKSSEA 722
            MLKDGY+YK VS  S+VFWGVQPS+ ELLKF+ ++K + ED+ W+SSVY+ RKK++ ++ 
Sbjct: 336  MLKDGYMYKWVSNGSVVFWGVQPSESELLKFSNVNKDDSEDLDWVSSVYSGRKKVRLTDD 395

Query: 723  ADVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKILKGDTAGQEVMTIKFEDIKSR 902
            +D    + + N + LHDLVLFG+K FGVI+ + KDG++ILKG T G  V+T++ +DIKS 
Sbjct: 396  SDNVATTSRKNEYKLHDLVLFGQKDFGVIVTVEKDGVRILKGGTEGSAVVTLRKQDIKSG 455

Query: 903  CVDKMFTASDRHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTLFIYDENQEENSGLFCA 1082
            CVDKMFTA DRH KTI +ND VKV +G LEGR+G V+H+Y+G++FIYDEN+ ENSG FCA
Sbjct: 456  CVDKMFTALDRHSKTISVNDIVKVLEGSLEGRQGIVKHLYRGSIFIYDENETENSGFFCA 515

Query: 1083 KSDLCENITPPKDS--SFRKG--GNKSSSSFNQSPVRSCEQEDSSH-TFRNRRSESNQPF 1247
            KS+ CE I   ++S  SF     G+ S+S F++ P  S E +DSS    R R+ + +  F
Sbjct: 516  KSESCEKIKKSRESVNSFDDNLQGDGSASLFSEPPTISFENQDSSSGAGRRRQYDRDSLF 575

Query: 1248 SIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKRESAAEMP 1427
            SIGQTLRI KGPLKGYLCRVVRI+RS+VTVKLDSLVK+ITV+ +FLS+P  KR+ +    
Sbjct: 576  SIGQTLRICKGPLKGYLCRVVRIFRSEVTVKLDSLVKIITVDAKFLSVPTRKRDDSTGAA 635

Query: 1428 SDIFGTQER-LIGGLSGNG-EQTVGAGLWDG-----ASSSWQVLSTSTLFANNNVQKIEQ 1586
            SD+FGTQE   IG  S +G E   G   WD       S  WQ  S S L A  N     +
Sbjct: 636  SDLFGTQEMPSIGPFSADGTESQPGRSSWDSPLPSFGSDGWQPFSASKLSAAGNTD--NK 693

Query: 1587 EQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPW 1766
                DPWGSKV          AD W + ++  +GD   S  W      AA      AD W
Sbjct: 694  TDDVDPWGSKVK-----SDQSADTW-ANAAAPSGDQNSS--WDKSTTNAASGQ---ADTW 742

Query: 1767 GSNNSISAGDCEQ----GADPWGSNKSISAGDQGGTDPWGSKLLPVARDKEQGADAWGRN 1934
             +N++  +    Q     A  W   K++ A D GG+   G+K+  +   K  G +AW + 
Sbjct: 743  QNNSNDWSNKGSQKSTSDAGGWEKEKTL-ASDSGGSWGTGNKISNLDNSKTGGDNAWDK- 800

Query: 1935 ISGASTDKEE-------RADPWGGKTALGDSSHS----DKAF-----DSWVKVSGTS--- 2057
               AS DK++         + W    A+   + S     KA      D+W K  G     
Sbjct: 801  ---ASNDKDKGKGSSWNEPNNWTKSEAVTSKTDSWDVKGKAIAMDDGDTWGKAKGKGIVI 857

Query: 2058 GEMNSWNKSEGGGFE-KDGDGWNR 2126
             E +SW+K++G G   K+ D W +
Sbjct: 858  NEDDSWDKAKGKGIVIKEDDSWGK 881


>ref|XP_020091604.1| protein RNA-directed DNA methylation 3 isoform X2 [Ananas comosus]
          Length = 1714

 Score =  658 bits (1697), Expect = 0.0
 Identities = 370/744 (49%), Positives = 481/744 (64%), Gaps = 36/744 (4%)
 Frame = +3

Query: 3    VGREQQMVLCLMHKYADLQRLGTKMEIISAFALEHVKGYVYIEADKACDVVEACKGFFNI 182
            +GRE+QM  C M K+ DL  LG K++I+SAFAL+HVKG+V++EADKA DV EACKGF NI
Sbjct: 156  IGRERQMAFCFMQKFVDLDCLGNKLQIVSAFALDHVKGFVFVEADKANDVSEACKGFCNI 215

Query: 183  YATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYDDARKRATIKL 362
            Y  R+ LVP  E+ HLLS+RNK C IS+G+WVRMK+G YKGDL QVV+ DD RKR  IKL
Sbjct: 216  YPGRINLVPPSEVSHLLSSRNKSCGISQGSWVRMKSGKYKGDLAQVVNLDDGRKRVMIKL 275

Query: 363  VPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIRRDRHTGEYFEILDGL 542
            +PRIDLQAI+KK+GGG+SLK A VP PRLISS EL+ FR  IE RRDR +GE FE+LDG+
Sbjct: 276  IPRIDLQAISKKFGGGLSLKHAAVPAPRLISSHELDEFRPLIETRRDRQSGEVFEVLDGM 335

Query: 543  MLKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWLSSVYNARKKMKSSEA 722
            MLKDGY+YK VS  S+VFWGVQPS+ ELLKF+ ++K + ED+ W+SSVY+ RKK++ ++ 
Sbjct: 336  MLKDGYMYKWVSNGSVVFWGVQPSESELLKFSNVNKDDSEDLDWVSSVYSGRKKVRLTDD 395

Query: 723  ADVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKILKGDTAGQEVMTIKFEDIKSR 902
            +D    + + N + LHDLVLFG+K FGVI+ + KDG++ILKG T G  V+T++ +DIKS 
Sbjct: 396  SDNVATTSRKNEYKLHDLVLFGQKDFGVIVTVEKDGVRILKGGTEGSAVVTLRKQDIKSG 455

Query: 903  CVDKMFTASDRHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTLFIYDENQEENSGLFCA 1082
            CVDKMFTA DRH KTI +ND VKV +G LEGR+G V+H+Y+G++FIYDEN+ ENSG FCA
Sbjct: 456  CVDKMFTALDRHSKTISVNDIVKVLEGSLEGRQGIVKHLYRGSIFIYDENETENSGFFCA 515

Query: 1083 KSDLCENITPPKDS--SFRKG--GNKSSSSFNQSPVRSCEQEDSSH-TFRNRRSESNQPF 1247
            KS+ CE I   ++S  SF     G+ S+S F++ P  S E +DSS    R R+ + +  F
Sbjct: 516  KSESCEKIKKSRESVNSFDDNLQGDGSASLFSEPPTISFENQDSSSGAGRRRQYDRDSLF 575

Query: 1248 SIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKRESAAEMP 1427
            SIGQTLRI KGPLKGYLCRVVRI+RS+VTVKLDSLVK+ITV+ +FLS+P  KR+ +    
Sbjct: 576  SIGQTLRICKGPLKGYLCRVVRIFRSEVTVKLDSLVKIITVDAKFLSVPTRKRDDSTGAA 635

Query: 1428 SDIFGTQER-LIGGLSGNG-EQTVGAGLWDG-----ASSSWQVLSTSTLFANNNVQKIEQ 1586
            SD+FGTQE   IG  S +G E   G   WD       S  WQ  S S L A  N     +
Sbjct: 636  SDLFGTQEMPSIGPFSADGTESQPGRSSWDSPLPSFGSDGWQPFSASKLSAAGNTD--NK 693

Query: 1587 EQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPW 1766
                DPWGSKV          AD W + ++  +GD   S  W      AA      AD W
Sbjct: 694  TDDVDPWGSKVK-----SDQSADTW-ANAAAPSGDQNSS--WDKSTTNAASGQ---ADTW 742

Query: 1767 GSNNSISAGDCEQ----GADPWGSNKSISAGDQGGTDPWGSKLLPVARDKEQGADAWGRN 1934
             +N++  +    Q     A  W   K++ A D GG+   G+K+  +   K  G +AW + 
Sbjct: 743  QNNSNDWSNKGSQKSTSDAGGWEKEKTL-ASDSGGSWGTGNKISNLDNSKTGGDNAWDK- 800

Query: 1935 ISGASTDKEE-------RADPWGGKTALGDSSHS----DKAF-----DSWVKVSGTS--- 2057
               AS DK++         + W    A+   + S     KA      D+W K  G     
Sbjct: 801  ---ASNDKDKGKGSSWNEPNNWTKSEAVTSKTDSWDVKGKAIAMDDGDTWGKAKGKGIVI 857

Query: 2058 GEMNSWNKSEGGGFE-KDGDGWNR 2126
             E +SW+K++G G   K+ D W +
Sbjct: 858  NEDDSWDKAKGKGIVIKEDDSWGK 881


>ref|XP_020091602.1| protein RNA-directed DNA methylation 3 isoform X1 [Ananas comosus]
          Length = 1715

 Score =  658 bits (1697), Expect = 0.0
 Identities = 370/744 (49%), Positives = 481/744 (64%), Gaps = 36/744 (4%)
 Frame = +3

Query: 3    VGREQQMVLCLMHKYADLQRLGTKMEIISAFALEHVKGYVYIEADKACDVVEACKGFFNI 182
            +GRE+QM  C M K+ DL  LG K++I+SAFAL+HVKG+V++EADKA DV EACKGF NI
Sbjct: 156  IGRERQMAFCFMQKFVDLDCLGNKLQIVSAFALDHVKGFVFVEADKANDVSEACKGFCNI 215

Query: 183  YATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYDDARKRATIKL 362
            Y  R+ LVP  E+ HLLS+RNK C IS+G+WVRMK+G YKGDL QVV+ DD RKR  IKL
Sbjct: 216  YPGRINLVPPSEVSHLLSSRNKSCGISQGSWVRMKSGKYKGDLAQVVNLDDGRKRVMIKL 275

Query: 363  VPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIRRDRHTGEYFEILDGL 542
            +PRIDLQAI+KK+GGG+SLK A VP PRLISS EL+ FR  IE RRDR +GE FE+LDG+
Sbjct: 276  IPRIDLQAISKKFGGGLSLKHAAVPAPRLISSHELDEFRPLIETRRDRQSGEVFEVLDGM 335

Query: 543  MLKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWLSSVYNARKKMKSSEA 722
            MLKDGY+YK VS  S+VFWGVQPS+ ELLKF+ ++K + ED+ W+SSVY+ RKK++ ++ 
Sbjct: 336  MLKDGYMYKWVSNGSVVFWGVQPSESELLKFSNVNKDDSEDLDWVSSVYSGRKKVRLTDD 395

Query: 723  ADVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKILKGDTAGQEVMTIKFEDIKSR 902
            +D    + + N + LHDLVLFG+K FGVI+ + KDG++ILKG T G  V+T++ +DIKS 
Sbjct: 396  SDNVATTSRKNEYKLHDLVLFGQKDFGVIVTVEKDGVRILKGGTEGSAVVTLRKQDIKSG 455

Query: 903  CVDKMFTASDRHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTLFIYDENQEENSGLFCA 1082
            CVDKMFTA DRH KTI +ND VKV +G LEGR+G V+H+Y+G++FIYDEN+ ENSG FCA
Sbjct: 456  CVDKMFTALDRHSKTISVNDIVKVLEGSLEGRQGIVKHLYRGSIFIYDENETENSGFFCA 515

Query: 1083 KSDLCENITPPKDS--SFRKG--GNKSSSSFNQSPVRSCEQEDSSH-TFRNRRSESNQPF 1247
            KS+ CE I   ++S  SF     G+ S+S F++ P  S E +DSS    R R+ + +  F
Sbjct: 516  KSESCEKIKKSRESVNSFDDNLQGDGSASLFSEPPTISFENQDSSSGAGRRRQYDRDSLF 575

Query: 1248 SIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKRESAAEMP 1427
            SIGQTLRI KGPLKGYLCRVVRI+RS+VTVKLDSLVK+ITV+ +FLS+P  KR+ +    
Sbjct: 576  SIGQTLRICKGPLKGYLCRVVRIFRSEVTVKLDSLVKIITVDAKFLSVPTRKRDDSTGAA 635

Query: 1428 SDIFGTQER-LIGGLSGNG-EQTVGAGLWDG-----ASSSWQVLSTSTLFANNNVQKIEQ 1586
            SD+FGTQE   IG  S +G E   G   WD       S  WQ  S S L A  N     +
Sbjct: 636  SDLFGTQEMPSIGPFSADGTESQPGRSSWDSPLPSFGSDGWQPFSASKLSAAGNTD--NK 693

Query: 1587 EQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPW 1766
                DPWGSKV          AD W + ++  +GD   S  W      AA      AD W
Sbjct: 694  TDDVDPWGSKVK-----SDQSADTW-ANAAAPSGDQNSS--WDKSTTNAASGQ---ADTW 742

Query: 1767 GSNNSISAGDCEQ----GADPWGSNKSISAGDQGGTDPWGSKLLPVARDKEQGADAWGRN 1934
             +N++  +    Q     A  W   K++ A D GG+   G+K+  +   K  G +AW + 
Sbjct: 743  QNNSNDWSNKGSQKSTSDAGGWEKEKTL-ASDSGGSWGTGNKISNLDNSKTGGDNAWDK- 800

Query: 1935 ISGASTDKEE-------RADPWGGKTALGDSSHS----DKAF-----DSWVKVSGTS--- 2057
               AS DK++         + W    A+   + S     KA      D+W K  G     
Sbjct: 801  ---ASNDKDKGKGSSWNEPNNWTKSEAVTSKTDSWDVKGKAIAMDDGDTWGKAKGKGIVI 857

Query: 2058 GEMNSWNKSEGGGFE-KDGDGWNR 2126
             E +SW+K++G G   K+ D W +
Sbjct: 858  NEDDSWDKAKGKGIVIKEDDSWGK 881


>gb|AQK94717.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 925

 Score =  633 bits (1633), Expect = 0.0
 Identities = 346/736 (47%), Positives = 474/736 (64%), Gaps = 30/736 (4%)
 Frame = +3

Query: 3    VGREQQMVLCLMHKYADLQRLGTKMEIISAFALEHVKGYVYIEADKACDVVEACKGFFNI 182
            VGRE+QM  C M K+ DL+++GTK+ II+AFAL+H++G+V++EA+KACDV EACKGF ++
Sbjct: 17   VGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFVFVEAEKACDVTEACKGFCSV 76

Query: 183  YATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYDDARKRATIKL 362
            Y +R+  VP+ E+P LLS+R KP  IS+GTW+RMKNGNYKGDL QVV  DD RK+  IK+
Sbjct: 77   YTSRITSVPAAEVPSLLSSRTKPFEISRGTWIRMKNGNYKGDLAQVVSVDDGRKKVMIKI 136

Query: 363  VPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIRRDRHTGEYFEILDGL 542
            VPR+DL AI+KK+GG VSLK A VP PRLISSQELE FR HIEI+RDR TGE FE+LDGL
Sbjct: 137  VPRVDLHAISKKFGGAVSLKGAAVPAPRLISSQELEFFRPHIEIKRDRQTGEVFEVLDGL 196

Query: 543  MLKDGYLYKKVSIASIVFWGVQPSKDELLKFTE--MSKAEEEDVSWLSSVYNARK----- 701
            M KDG+LYKKV+++S+++WG+QP++ ELLKF+    ++A  +D+ WLS +Y ++K     
Sbjct: 197  MFKDGFLYKKVALSSLIYWGIQPTETELLKFSSSPSNRASADDLDWLSGMYGSKKRNLPE 256

Query: 702  ---------KMKSSEAADVKGAS-----EQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKI 839
                     K++SS+A+D+K ++     ++ + FNLHDLVL+GRK FGVI+ + KDG +I
Sbjct: 257  KRDMESSSSKIRSSKASDLKASTSTENYDENDEFNLHDLVLYGRKDFGVIVAVEKDGFRI 316

Query: 840  LKGDTAGQEVMTIKFEDIKSRCVDKMFTASDRHRKTIYINDSVKVSDGPLEGREGTVRHM 1019
            LKG   G  V  ++ +DIK  CVDKMFTA D  +KTI IND+V V +GP +G++G V+H+
Sbjct: 317  LKGGPEGSAV-KVRKQDIKKGCVDKMFTAVDHQKKTISINDTVNVVEGPFQGKQGVVKHL 375

Query: 1020 YKGTLFIYDENQEENSGLFCAKSDLCENITPPKDSSFRKGGNKSSSSFNQSPVRSCEQED 1199
            Y G LFIY+E++ EN G FCA+S  CE I     SS  +  + ++  F   P  + EQ  
Sbjct: 376  YLGILFIYNESESENCGFFCAQSGSCEKIRKGLGSSTTESSDFTTPMF---PEPAYEQNG 432

Query: 1200 SSHTFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQ 1379
               T R  RS   Q FSIGQ LRIRKGPLKGYLCRVVRI+R+DVTVKLDSL+K++TV+  
Sbjct: 433  HRDTERPYRSTREQLFSIGQMLRIRKGPLKGYLCRVVRIFRNDVTVKLDSLLKIVTVQAD 492

Query: 1380 FLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASSSWQVLSTSTLFA 1559
             LS+P  + ++ +  P+  FG+Q+    G S  G+ +   GL    S SWQ  S+STL  
Sbjct: 493  LLSVPANRGDNLSGAPASKFGSQDTSFFG-SEAGKTSWDNGLPSFGSDSWQPFSSSTL-- 549

Query: 1560 NNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAAR 1739
              +VQ    E  ADPW  K S      K ++DPWG K+       G SD WG K      
Sbjct: 550  --SVQNAGGESEADPWSKKTSA-----KDDSDPWGKKTD------GDSDRWGKKT----- 591

Query: 1740 DHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKLLPVARDKEQGAD 1919
                 +DPWG   ++SA D +  ++PWG     SA   G +DPWG K++  A   +  +D
Sbjct: 592  --DGDSDPWG-KEAVSAADGD--SNPWGKETVPSAA--GDSDPWGKKVVSSA---DGDSD 641

Query: 1920 AWGRNISGASTDKEERAD---PWGGKTALGDSSHSDKAFDSWVK-VSGTSGEMNSWNKS- 2084
            +WG+  + ++ D E+       W  +  +G    SD A  SW + V   S + ++W ++ 
Sbjct: 642  SWGKKATSSAVDTEKEGSGGTAWDKQAGVGG---SDAAGSSWDRAVVNESEKSDNWGEAC 698

Query: 2085 ----EGGGFEKDGDGW 2120
                 G G E D D W
Sbjct: 699  RVMDMGTGAEADTDPW 714


>ref|XP_004961584.1| protein RNA-directed DNA methylation 3 [Setaria italica]
          Length = 1702

 Score =  650 bits (1676), Expect = 0.0
 Identities = 362/753 (48%), Positives = 489/753 (64%), Gaps = 42/753 (5%)
 Frame = +3

Query: 3    VGREQQMVLCLMHKYADLQRLGTKMEIISAFALEHVKGYVYIEADKACDVVEACKGFFNI 182
            VGRE+QM  C M K+ DLQ++GTK+ II+AFAL+HV+G+V++EA+KACDV EACKGF ++
Sbjct: 170  VGRERQMAFCFMQKFVDLQKIGTKVPIITAFALDHVRGFVFVEAEKACDVTEACKGFCSV 229

Query: 183  YATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYDDARKRATIKL 362
            YA+R+  VP+ E+P LLS+R KP  IS+GTWVRMKNGNYKGDL QVV  DD RKR  IK+
Sbjct: 230  YASRIISVPAAEVPSLLSSRTKPFEISRGTWVRMKNGNYKGDLAQVVSEDDGRKRVLIKI 289

Query: 363  VPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIRRDRHTGEYFEILDGL 542
            +PR+DL AI++KYGG +SLKEA VP PRLISSQELE FR HIE++RDR TGE FE+LDGL
Sbjct: 290  IPRVDLHAISRKYGGAISLKEAVVPAPRLISSQELEFFRPHIEMKRDRQTGEVFEVLDGL 349

Query: 543  MLKDGYLYKKVSIASIVFWGVQPSKDELLKFTE--MSKAEEEDVSWLSSVYNARK----- 701
            M KDG+LYK+V+++S+++WG+QP++ ELLKF+   +++A  +D+ W+SS+Y  +K     
Sbjct: 350  MFKDGFLYKRVALSSLIYWGIQPTETELLKFSSSPINRASADDLDWVSSIYGPKKRNLPA 409

Query: 702  ---------KMKSSEAADVKGASE---QGNGFNLHDLVLFGRKGFGVIIDLGKDGIKILK 845
                     K KSS+A+    ++E     + FNLHDLVLFGRK FGVII + KDG++ILK
Sbjct: 410  ERGIKSPSSKTKSSKASKASTSTENYDDNDEFNLHDLVLFGRKDFGVIIAIEKDGLRILK 469

Query: 846  GDTAGQEVMTIKFEDIKSRCVDKMFTASDRHRKTIYINDSVKVSDGPLEGREGTVRHMYK 1025
            G   G  V T+K +DIK  CVDKMFTA DR +K I IND+V V +GP +G++G V+H+Y 
Sbjct: 470  GGPEGSAV-TVKKQDIKKGCVDKMFTAVDRQKKIISINDTVNVLEGPFQGKQGVVKHLYM 528

Query: 1026 GTLFIYDENQEENSGLFCAKSDLCENITPPKDSSFRKGGNKSSSSFNQSPVRSCEQEDSS 1205
            GTLFIY+E++ EN G FCA+   CEN+   K+SS  +  +     F++      EQ +  
Sbjct: 529  GTLFIYNESESENCGFFCAQCGSCENVKKRKESSTTENLDNPIPMFSE----PYEQNEHR 584

Query: 1206 HTFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFL 1385
             T R  RS   Q FSIGQ LRIRKGPLKGYLCRVV+I+R+DVTVKLDSL+K++TV+ +FL
Sbjct: 585  DTERPYRSTREQLFSIGQMLRIRKGPLKGYLCRVVKIFRNDVTVKLDSLLKIVTVQAEFL 644

Query: 1386 SIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASSSWQVLSTSTLFANN 1565
            S+P  + ++++  P+  FG+Q+    G S   + +   GL    S SWQ  S+STL A N
Sbjct: 645  SVPANRGDNSSGAPAGNFGSQDTSFFG-SEADKASWDNGLPSFGSDSWQPFSSSTLPAQN 703

Query: 1566 NVQKIEQEQGADPWGSKVSLAAGDHKP-------EADPWGSKSSVAAGDLGGSDPWGSKL 1724
                   E  +DPW  K S A G+  P       ++DPWG+K  V +GD G SDPWG K+
Sbjct: 704  ----AGGESESDPW-CKKSSAGGESDPWGKKTDSDSDPWGNK-VVPSGD-GDSDPWGKKV 756

Query: 1725 V-PAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKLLPVARD 1901
            V PA  D    +DPWG    + A   +  +DPWG  K + A   G +DPWG K   V   
Sbjct: 757  VAPADGD----SDPWGKKVVVPA---DGDSDPWG--KKVVAPADGDSDPWGKK---VMAP 804

Query: 1902 KEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVK----------VSG 2051
             +  +D WG+ +   +   +  +DPWG K      + +D   D W K           +G
Sbjct: 805  SDGDSDPWGKKVVAPA---DGDSDPWGKKVV----APADGDSDPWAKNTTSSAFRVLNTG 857

Query: 2052 TSGEMNS----WNKSEG-GGFEKDGDGWNRPFV 2135
            T+ + +S    W+K  G GG +  G  W+R  V
Sbjct: 858  TTQKESSSGKVWDKQAGVGGSDAAGSSWDRTSV 890



 Score = 73.9 bits (180), Expect = 1e-09
 Identities = 60/229 (26%), Positives = 95/229 (41%), Gaps = 6/229 (2%)
 Frame = +3

Query: 1461 GGLSGNGEQTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGS----KVSLA 1628
            GG S   + T   G W G + +     ++  ++++   K   E     W S    K S+ 
Sbjct: 1195 GGSSDWNKDTSNKGSWGGDNWNATNPPSNQPWSSSGGTKSYGENKPSTWNSSEDNKTSVG 1254

Query: 1629 AGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQG 1808
              D     DPW SK +   G    +D W SK+  A  +   G     + +S S G  E  
Sbjct: 1255 EQD-----DPWASKVASTEGKEQRNDTWASKMTSAGAEDSSGGWNTKTKDSCSDGGEESQ 1309

Query: 1809 ADPWGSNKSISAGDQGGTDPWGSKL-LPVARDKEQGADAWGRNISGASTDKEERA-DPWG 1982
             D W +    + G +  TDPW SK+   V  D   G+    R+ +   T  EE+A DPW 
Sbjct: 1310 NDSWANKIGSNKGKEQETDPWASKVPSTVGSDDNNGS----RSTTAKGTPSEEKADDPWS 1365

Query: 1983 GKTALGDSSHSDKAFDSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRP 2129
             K       + +   DSW   S    + +SW+K      +++ + W++P
Sbjct: 1366 SK-----GGNDNIKIDSWGAGSSDGNQESSWSKPNFSLGDQE-NTWSKP 1408


>gb|OAY66311.1| Protein RNA-directed DNA methylation 3 [Ananas comosus]
          Length = 1701

 Score =  649 bits (1675), Expect = 0.0
 Identities = 369/743 (49%), Positives = 478/743 (64%), Gaps = 35/743 (4%)
 Frame = +3

Query: 3    VGREQQMVLCLMHKYADLQRLGTKMEIISAFALEHVKGYVYIEADKACDVVEACKGFFNI 182
            +GRE+QM  C M K+ DL  LG K++I+SAFAL+HVKG+V++EADKA DV EACKGF NI
Sbjct: 156  IGRERQMAFCFMQKFVDLDCLGNKLQIVSAFALDHVKGFVFVEADKANDVSEACKGFCNI 215

Query: 183  YATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYDDARKRATIKL 362
            Y  R+ LVP  E+ HLLS+RNK C IS+G+WVRMK+G YKGDL QVV+ DD RKR  IKL
Sbjct: 216  YPGRINLVPPSEVSHLLSSRNKSCGISQGSWVRMKSGKYKGDLAQVVNLDDGRKRVMIKL 275

Query: 363  VPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIRRDRHTGEYFEILDGL 542
            +PRIDLQAI+KK+GGG+SLK A VP PRLISS ELE     IE RRDR +GE FE+LDG+
Sbjct: 276  IPRIDLQAISKKFGGGLSLKHAAVPAPRLISSHELEPL---IETRRDRQSGEVFEVLDGM 332

Query: 543  MLKDGYLYKKVSIASIVFWGVQPSKDELLKFTEMSKAEEEDVSWLSSVYNARKKMKSSEA 722
            MLKDGY+YK VS  S+VFWGVQPS+ ELLKF+ ++K + ED+ W+SSVY+ RKK++ ++ 
Sbjct: 333  MLKDGYMYKWVSNGSVVFWGVQPSESELLKFSNVNKDDSEDLDWVSSVYSGRKKVRLTDD 392

Query: 723  ADVKGASEQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKILKGDTAGQEVMTIKFEDIKSR 902
            +D    + + N + LHDLVLFG+K FGVI+ + KDG++ILKG T G  V+T++ +DIKS 
Sbjct: 393  SDNVATTSRKNEYKLHDLVLFGQKDFGVIVTVEKDGVRILKGGTEGSAVVTLRKQDIKSG 452

Query: 903  CVDKMFTASDRHRKTIYINDSVKVSDGPLEGREGTVRHMYKGTLFIYDENQEENSGLFCA 1082
            CVDKMFTA DRH KTI +ND VKV +G LEGR+G V+H+Y+G++FIYDEN+ ENSG FCA
Sbjct: 453  CVDKMFTALDRHSKTISVNDIVKVLEGSLEGRQGIVKHLYRGSIFIYDENETENSGFFCA 512

Query: 1083 KSDLCENITPPKDS--SFRKG-GNKSSSSFNQSPVRSCEQEDSSH-TFRNRRSESNQPFS 1250
            KS+ CE I   ++S  SF    G+ S+S F++ P  S E +DSS    R R+ + +  FS
Sbjct: 513  KSESCEKIKKSRESVNSFDDNLGDGSASLFSEPPTISFENQDSSSGAGRRRQYDRDSLFS 572

Query: 1251 IGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKRESAAEMPS 1430
            IGQTLRI KGPLKGYLCRVVRI+RS+VTVKLDSLVK+ITV+ +FLS+P  KR+ +    S
Sbjct: 573  IGQTLRICKGPLKGYLCRVVRIFRSEVTVKLDSLVKIITVDAKFLSVPTRKRDDSTGAAS 632

Query: 1431 DIFGTQER-LIGGLSGNG-EQTVGAGLWDG-----ASSSWQVLSTSTLFANNNVQKIEQE 1589
            D+FGTQE   IG  S +G E   G   WD       S  WQ  S S L A  N     + 
Sbjct: 633  DLFGTQEMPSIGPFSADGTESQPGRSSWDSPLPSFGSDGWQPFSASKLSAAGNTD--NKT 690

Query: 1590 QGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWG 1769
               DPWGSKV          AD W + ++  +GD   S  W      AA      AD W 
Sbjct: 691  DDVDPWGSKVK-----SDQSADTW-ANAAAPSGDQNSS--WDKSTTNAASGQ---ADTWQ 739

Query: 1770 SNNSISAGDCEQ----GADPWGSNKSISAGDQGGTDPWGSKLLPVARDKEQGADAWGRNI 1937
            +N++  +    Q     A  W   K++ A D GG+   G+K   +   K  G +AW +  
Sbjct: 740  NNSNDWSNKGSQKSTSDAGGWEKEKTL-ASDSGGSWGTGNKTSNLDNSKTGGDNAWDK-- 796

Query: 1938 SGASTDKEE-------RADPWGGKTALGDSSHS----DKAF-----DSWVKVSGTS---G 2060
              AS DK++         + W    A+   + S     KA      D+W K  G      
Sbjct: 797  --ASNDKDKGKGSSWNEPNNWTKSEAVTSKTDSWDVKGKAIAMDDGDTWGKAKGKGIVIN 854

Query: 2061 EMNSWNKSEGGGFE-KDGDGWNR 2126
            E +SW+K++G G   K+ D W +
Sbjct: 855  EDDSWDKAKGKGIVIKEDDSWGK 877


>gb|AQK94722.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 967

 Score =  627 bits (1616), Expect = 0.0
 Identities = 354/752 (47%), Positives = 478/752 (63%), Gaps = 43/752 (5%)
 Frame = +3

Query: 3    VGREQQMVLCLMHKYADLQRLGTKMEIISAFALEHVKGYVYIEADKACDVVEACKGFFNI 182
            VGRE+QM  C M K+ DL+++GTK+ II+AFAL+H++G+V++EA+KACDV EACKGF ++
Sbjct: 17   VGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFVFVEAEKACDVTEACKGFCSV 76

Query: 183  YATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYDDARKRATIKL 362
            Y +R+  VP+ E+P LLS+R KP  IS+GTW+RMKNGNYKGDL QVV  DD RK+  IK+
Sbjct: 77   YTSRITSVPAAEVPSLLSSRTKPFEISRGTWIRMKNGNYKGDLAQVVSVDDGRKKVMIKI 136

Query: 363  VPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIRRDRHTGEYFEILDGL 542
            VPR+DL AI+KK+GG VSLK A VP PRLISSQELE FR HIEI+RDR TGE FE+LDGL
Sbjct: 137  VPRVDLHAISKKFGGAVSLKGAAVPAPRLISSQELEFFRPHIEIKRDRQTGEVFEVLDGL 196

Query: 543  MLKDGYLYKKVSIASIVFWGVQPSKDELLKFTE--MSKAEEEDVSWLSSVYNARK----- 701
            M KDG+LYKKV+++S+++WG+QP++ ELLKF+    ++A  +D+ WLS +Y ++K     
Sbjct: 197  MFKDGFLYKKVALSSLIYWGIQPTETELLKFSSSPSNRASADDLDWLSGMYGSKKRNLPE 256

Query: 702  ---------KMKSSEAADVKGAS-----EQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKI 839
                     K++SS+A+D+K ++     ++ + FNLHDLVL+GRK FGVI+ + KDG +I
Sbjct: 257  KRDMESSSSKIRSSKASDLKASTSTENYDENDEFNLHDLVLYGRKDFGVIVAVEKDGFRI 316

Query: 840  LKGDTAGQEVMTIKFEDIKSRCVDKMFTASDRHRKTIYINDSVKVSDGPLEGREGTVRHM 1019
            LKG   G  V  ++ +DIK  CVDKMFTA D  +KTI IND+V V +GP +G++G V+H+
Sbjct: 317  LKGGPEGSAV-KVRKQDIKKGCVDKMFTAVDHQKKTISINDTVNVVEGPFQGKQGVVKHL 375

Query: 1020 YKGTLFIYDENQEENSGLFCAKSDLCENITPPKDSSFRKGGNKSSSSFNQSPVRSCEQED 1199
            Y G LFIY+E++ EN G FCA+S  CE I     SS  +  + ++  F   P  + EQ  
Sbjct: 376  YLGILFIYNESESENCGFFCAQSGSCEKIRKGLGSSTTESSDFTTPMF---PEPAYEQNG 432

Query: 1200 SSHTFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQ 1379
               T R  RS   Q FSIGQ LRIRKGPLKGYLCRVVRI+R+DVTVKLDSL+K++TV+  
Sbjct: 433  HRDTERPYRSTREQLFSIGQMLRIRKGPLKGYLCRVVRIFRNDVTVKLDSLLKIVTVQAD 492

Query: 1380 FLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASSSWQVLSTSTLFA 1559
             LS+P  + ++ +  P+  FG+Q+    G S  G+ +   GL    S SWQ  S+STL  
Sbjct: 493  LLSVPANRGDNLSGAPASKFGSQDTSFFG-SEAGKTSWDNGLPSFGSDSWQPFSSSTL-- 549

Query: 1560 NNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDL--------GGSDPWG 1715
              +VQ    E  ADPW  K S      K ++DPWG K+    GD         G SDPWG
Sbjct: 550  --SVQNAGGESEADPWSKKTSA-----KDDSDPWGKKTD---GDSDRWGKKTDGDSDPWG 599

Query: 1716 SKLVPAARDHKQGADPWGSNNSIS-AGDCEQGADPWGSNKSISAGDQGGTDPWGSKLL-- 1886
             + V AA      ++PWG     S AGD    +DPWG  K +S+ D G +D W ++    
Sbjct: 600  KEAVSAA---DGDSNPWGKETVPSAAGD----SDPWG-KKVVSSAD-GDSDSWDTEKEGS 650

Query: 1887 -PVARDKEQ---GADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKA-FDSW---VK 2042
               A DK+    G+DA G +   A  ++ E++D WG    + D     +A  D W   VK
Sbjct: 651  GGTAWDKQAGVGGSDAAGSSWDRAVVNESEKSDNWGEACRVMDMGTGAEADTDPWGSKVK 710

Query: 2043 VSGTSGEMNSWNKS---EGGGFEKDGDGWNRP 2129
                 G  N+W K+        E    GW +P
Sbjct: 711  AVDMEGP-NNWEKATVPPNNKLEDVSQGWGQP 741



 Score = 67.0 bits (162), Expect = 1e-07
 Identities = 67/268 (25%), Positives = 103/268 (38%), Gaps = 28/268 (10%)
 Frame = +3

Query: 1410 SAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQE 1589
            S+A+  SD + T++   GG + + +  VG    D A SSW            +   + + 
Sbjct: 634  SSADGDSDSWDTEKEGSGGTAWDKQAGVGGS--DAAGSSW------------DRAVVNES 679

Query: 1590 QGADPWGS--KVSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADP 1763
            + +D WG   +V       + + DPWGSK  V A D+ G + W    VP     +  +  
Sbjct: 680  EKSDNWGEACRVMDMGTGAEADTDPWGSK--VKAVDMEGPNNWEKATVPPNNKLEDVSQG 737

Query: 1764 WGSNNSISAGD---------------CEQGA-----DPWGSNKSISAGDQGGTDPWG--- 1874
            WG     S  D               C+          WG +K  S G  GG   W    
Sbjct: 738  WGQPKGNSTEDQAIDNVSKDVDNNRACDSSLPVTEDGTWGKSKDNSCGGAGGAGGWDVSV 797

Query: 1875 ---SKLLPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVKV 2045
               +K   VA  +++G   WG+  + +S + EE  +  G     G S  +   +++W K 
Sbjct: 798  GNWNKSSVVADAQDEG---WGKG-NWSSAESEETNNQSGNWNKTGASDQA--GYNNWDKP 851

Query: 2046 SGTSGEMNSWNKSEGGGFEKDGDGWNRP 2129
                G  N WNK      +     WNRP
Sbjct: 852  KSFGG--NGWNKG-----DDQNSSWNRP 872


>gb|AQK94721.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 1116

 Score =  627 bits (1616), Expect = 0.0
 Identities = 354/752 (47%), Positives = 478/752 (63%), Gaps = 43/752 (5%)
 Frame = +3

Query: 3    VGREQQMVLCLMHKYADLQRLGTKMEIISAFALEHVKGYVYIEADKACDVVEACKGFFNI 182
            VGRE+QM  C M K+ DL+++GTK+ II+AFAL+H++G+V++EA+KACDV EACKGF ++
Sbjct: 166  VGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFVFVEAEKACDVTEACKGFCSV 225

Query: 183  YATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYDDARKRATIKL 362
            Y +R+  VP+ E+P LLS+R KP  IS+GTW+RMKNGNYKGDL QVV  DD RK+  IK+
Sbjct: 226  YTSRITSVPAAEVPSLLSSRTKPFEISRGTWIRMKNGNYKGDLAQVVSVDDGRKKVMIKI 285

Query: 363  VPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIRRDRHTGEYFEILDGL 542
            VPR+DL AI+KK+GG VSLK A VP PRLISSQELE FR HIEI+RDR TGE FE+LDGL
Sbjct: 286  VPRVDLHAISKKFGGAVSLKGAAVPAPRLISSQELEFFRPHIEIKRDRQTGEVFEVLDGL 345

Query: 543  MLKDGYLYKKVSIASIVFWGVQPSKDELLKFTE--MSKAEEEDVSWLSSVYNARK----- 701
            M KDG+LYKKV+++S+++WG+QP++ ELLKF+    ++A  +D+ WLS +Y ++K     
Sbjct: 346  MFKDGFLYKKVALSSLIYWGIQPTETELLKFSSSPSNRASADDLDWLSGMYGSKKRNLPE 405

Query: 702  ---------KMKSSEAADVKGAS-----EQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKI 839
                     K++SS+A+D+K ++     ++ + FNLHDLVL+GRK FGVI+ + KDG +I
Sbjct: 406  KRDMESSSSKIRSSKASDLKASTSTENYDENDEFNLHDLVLYGRKDFGVIVAVEKDGFRI 465

Query: 840  LKGDTAGQEVMTIKFEDIKSRCVDKMFTASDRHRKTIYINDSVKVSDGPLEGREGTVRHM 1019
            LKG   G  V  ++ +DIK  CVDKMFTA D  +KTI IND+V V +GP +G++G V+H+
Sbjct: 466  LKGGPEGSAV-KVRKQDIKKGCVDKMFTAVDHQKKTISINDTVNVVEGPFQGKQGVVKHL 524

Query: 1020 YKGTLFIYDENQEENSGLFCAKSDLCENITPPKDSSFRKGGNKSSSSFNQSPVRSCEQED 1199
            Y G LFIY+E++ EN G FCA+S  CE I     SS  +  + ++  F   P  + EQ  
Sbjct: 525  YLGILFIYNESESENCGFFCAQSGSCEKIRKGLGSSTTESSDFTTPMF---PEPAYEQNG 581

Query: 1200 SSHTFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQ 1379
               T R  RS   Q FSIGQ LRIRKGPLKGYLCRVVRI+R+DVTVKLDSL+K++TV+  
Sbjct: 582  HRDTERPYRSTREQLFSIGQMLRIRKGPLKGYLCRVVRIFRNDVTVKLDSLLKIVTVQAD 641

Query: 1380 FLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASSSWQVLSTSTLFA 1559
             LS+P  + ++ +  P+  FG+Q+    G S  G+ +   GL    S SWQ  S+STL  
Sbjct: 642  LLSVPANRGDNLSGAPASKFGSQDTSFFG-SEAGKTSWDNGLPSFGSDSWQPFSSSTL-- 698

Query: 1560 NNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDL--------GGSDPWG 1715
              +VQ    E  ADPW  K S      K ++DPWG K+    GD         G SDPWG
Sbjct: 699  --SVQNAGGESEADPWSKKTSA-----KDDSDPWGKKTD---GDSDRWGKKTDGDSDPWG 748

Query: 1716 SKLVPAARDHKQGADPWGSNNSIS-AGDCEQGADPWGSNKSISAGDQGGTDPWGSKLL-- 1886
             + V AA      ++PWG     S AGD    +DPWG  K +S+ D G +D W ++    
Sbjct: 749  KEAVSAA---DGDSNPWGKETVPSAAGD----SDPWG-KKVVSSAD-GDSDSWDTEKEGS 799

Query: 1887 -PVARDKEQ---GADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKA-FDSW---VK 2042
               A DK+    G+DA G +   A  ++ E++D WG    + D     +A  D W   VK
Sbjct: 800  GGTAWDKQAGVGGSDAAGSSWDRAVVNESEKSDNWGEACRVMDMGTGAEADTDPWGSKVK 859

Query: 2043 VSGTSGEMNSWNKS---EGGGFEKDGDGWNRP 2129
                 G  N+W K+        E    GW +P
Sbjct: 860  AVDMEGP-NNWEKATVPPNNKLEDVSQGWGQP 890



 Score = 67.0 bits (162), Expect = 1e-07
 Identities = 67/268 (25%), Positives = 103/268 (38%), Gaps = 28/268 (10%)
 Frame = +3

Query: 1410 SAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQE 1589
            S+A+  SD + T++   GG + + +  VG    D A SSW            +   + + 
Sbjct: 783  SSADGDSDSWDTEKEGSGGTAWDKQAGVGGS--DAAGSSW------------DRAVVNES 828

Query: 1590 QGADPWGS--KVSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADP 1763
            + +D WG   +V       + + DPWGSK  V A D+ G + W    VP     +  +  
Sbjct: 829  EKSDNWGEACRVMDMGTGAEADTDPWGSK--VKAVDMEGPNNWEKATVPPNNKLEDVSQG 886

Query: 1764 WGSNNSISAGD---------------CEQGA-----DPWGSNKSISAGDQGGTDPWG--- 1874
            WG     S  D               C+          WG +K  S G  GG   W    
Sbjct: 887  WGQPKGNSTEDQAIDNVSKDVDNNRACDSSLPVTEDGTWGKSKDNSCGGAGGAGGWDVSV 946

Query: 1875 ---SKLLPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVKV 2045
               +K   VA  +++G   WG+  + +S + EE  +  G     G S  +   +++W K 
Sbjct: 947  GNWNKSSVVADAQDEG---WGKG-NWSSAESEETNNQSGNWNKTGASDQA--GYNNWDKP 1000

Query: 2046 SGTSGEMNSWNKSEGGGFEKDGDGWNRP 2129
                G  N WNK      +     WNRP
Sbjct: 1001 KSFGG--NGWNKG-----DDQNSSWNRP 1021


>gb|PAN18741.1| hypothetical protein PAHAL_C02415 [Panicum hallii]
          Length = 1664

 Score =  638 bits (1646), Expect = 0.0
 Identities = 368/772 (47%), Positives = 485/772 (62%), Gaps = 59/772 (7%)
 Frame = +3

Query: 3    VGREQQMVLCLMHKYADLQRLGTKMEIISAFALEHVKGYVYIEADKACDVVEACKGFFNI 182
            VGRE+QM  C M K+ DLQ++GTK+ II+AFAL+HV+G+V++EA+KACDV EACKGF ++
Sbjct: 162  VGRERQMAFCFMQKFVDLQKIGTKVPIITAFALDHVRGFVFVEAEKACDVTEACKGFCSV 221

Query: 183  YATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYDDARKRATIKL 362
            YA+R+  VP+ E+P LLS+R KP  IS+GTWVRMKNGNYKGDL QVV  D+ RKR  IK+
Sbjct: 222  YASRITSVPAAEVPSLLSSRTKPFEISRGTWVRMKNGNYKGDLAQVVSVDNGRKRVMIKI 281

Query: 363  VPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIRRDRHTGEYFEILDGL 542
            +PR+DL AI+KKYGG +SLK A VP PRLISSQELE FR HIE++RDR TGE FE+LDGL
Sbjct: 282  IPRVDLHAISKKYGGAISLKGAAVPAPRLISSQELEFFRPHIEMKRDRQTGEVFEVLDGL 341

Query: 543  MLKDGYLYKKVSIASIVFWGVQPSKDELLKFTE--MSKAEEEDVSWLSSVYNARK----- 701
            M KDG+LYK+V+++S+++WG+QP++ ELLKF+   +++A  +D+ W+SS+Y  +K     
Sbjct: 342  MFKDGFLYKRVALSSLIYWGIQPTETELLKFSSSPINRASADDLDWVSSIYGPKKRNIPA 401

Query: 702  ----------KMKSSEAADVKGASE---QGNGFNLHDLVLFGRKGFGVIIDLGKDGIKIL 842
                      KMKSS+ +    ++E     + FNLHDLVLFGRK FGVII + KDG +IL
Sbjct: 402  KPDIKSSSSSKMKSSKTSKASISTEDFDDNDEFNLHDLVLFGRKDFGVIIAIEKDGFRIL 461

Query: 843  KGDTAGQEVMTIKFEDIKSRCVDKMFTASDRHRKTIYINDSVKVSDGPLEGREGTVRHMY 1022
            KG   G  V T+K  DIK  CVDKMFTA DR  K + IND+V V +GP +G++G V+H+Y
Sbjct: 462  KGGPEGSAV-TVKKNDIKKSCVDKMFTAVDRQNKIVSINDTVNVLEGPFQGKQGVVKHLY 520

Query: 1023 KGTLFIYDENQEENSGLFCAKSDLCENITPPKDSSFRKGGNKSSSSFNQSPV---RSCEQ 1193
             G LFIY+E++ EN G FCA+   CEN+   KD     GG+ + +  N  P+    S EQ
Sbjct: 521  MGILFIYNESESENCGFFCAQCGSCENVKKRKD----LGGSTTENLDNPFPMFAEPSYEQ 576

Query: 1194 EDSSHTFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVE 1373
             +   T R  RS   Q FSIGQ LRIRKGPLKGYLCRVVRI+R+DVTVKLDSL+K++TV+
Sbjct: 577  NEHRGTERPYRSTREQLFSIGQMLRIRKGPLKGYLCRVVRIFRNDVTVKLDSLLKIVTVQ 636

Query: 1374 EQFLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASSSWQVLSTSTL 1553
             +FLS+P  + ++ +  P+  FG+Q+    G S   + +   GL    S SWQ  S+STL
Sbjct: 637  AEFLSVPANRGDNLSGAPAGNFGSQDTSFFG-SEAEKTSWDNGLPSFGSDSWQPFSSSTL 695

Query: 1554 FANNNVQKIEQEQGADPWGSKVSLAAGDHKP-------EADPWGSKSSVAAGDLGGSDPW 1712
                 VQ    E   DPW SK S A G+  P       + DPWG+K  VA    G SDPW
Sbjct: 696  ----PVQNTGGESENDPW-SKKSSAEGESDPWGKKTDGDPDPWGNK--VAHSADGDSDPW 748

Query: 1713 GSKLVPAARDHKQGADPWGSNNSISA-GDCEQGADPWGSNKSISAGDQGGTDPWGSKLLP 1889
            G+K+ P+A      +DPWG+  + SA GD    +DPWG  K +     G +D WG K   
Sbjct: 749  GNKVAPSA---DGDSDPWGNKVAPSAYGD----SDPWG--KKVVTPAHGDSDAWGKKTTS 799

Query: 1890 V--------ARDKEQGAD-AWGR-------NISGASTD------KEERADPWGGKTALGD 2003
                     A  KE  +D AWG+       + +G+S D      + E++D WG    + D
Sbjct: 800  SAVGVWNAGAAQKESSSDNAWGKQAGVGRSDAAGSSWDGTVVNKESEKSDNWGEACRVVD 859

Query: 2004 SSHSDKAFDSW---VKVSGTSGEMNSWNKS---EGGGFEKDGDGWNRPFVKT 2141
                  A D W   VK   T G  +SW K+        E    GW RP  K+
Sbjct: 860  MGTGADA-DPWGSKVKAIDTEG-TDSWEKATMPPDNKLEGVSQGWGRPLGKS 909



 Score = 72.4 bits (176), Expect = 3e-09
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 2/178 (1%)
 Frame = +3

Query: 1602 PWGSK-VSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGSNN 1778
            PW S  V+ + G++KP        +  + G    +D W SK+  A  +   G     + +
Sbjct: 1178 PWSSSGVTKSFGENKPSTWNSSKDNKPSVGKEQQNDTWASKMTSAGAEDNSGGWNTRAKD 1237

Query: 1779 SISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKLLPVARDKEQGADAWGRNISGASTDK 1958
            S + G  E+  DPW +    +   +  TDPW SK +P +   +    +W  N +   T  
Sbjct: 1238 SCTDGGEERQNDPWANKAGTNKDKEQETDPWTSK-VPSSVGSDDNNSSW--NTTAKDTPS 1294

Query: 1959 EERA-DPWGGKTALGDSSHSDKAFDSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRP 2129
            EE+A DPW  K     S+ + K  DSW   S    + +SW+K     F      W++P
Sbjct: 1295 EEKAGDPWSSK----GSNDNIKKTDSWGAGSSGGNQESSWSKP---NFSLGDQAWSKP 1345


>gb|PAN18742.1| hypothetical protein PAHAL_C02415 [Panicum hallii]
          Length = 1679

 Score =  638 bits (1646), Expect = 0.0
 Identities = 368/772 (47%), Positives = 485/772 (62%), Gaps = 59/772 (7%)
 Frame = +3

Query: 3    VGREQQMVLCLMHKYADLQRLGTKMEIISAFALEHVKGYVYIEADKACDVVEACKGFFNI 182
            VGRE+QM  C M K+ DLQ++GTK+ II+AFAL+HV+G+V++EA+KACDV EACKGF ++
Sbjct: 162  VGRERQMAFCFMQKFVDLQKIGTKVPIITAFALDHVRGFVFVEAEKACDVTEACKGFCSV 221

Query: 183  YATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYDDARKRATIKL 362
            YA+R+  VP+ E+P LLS+R KP  IS+GTWVRMKNGNYKGDL QVV  D+ RKR  IK+
Sbjct: 222  YASRITSVPAAEVPSLLSSRTKPFEISRGTWVRMKNGNYKGDLAQVVSVDNGRKRVMIKI 281

Query: 363  VPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIRRDRHTGEYFEILDGL 542
            +PR+DL AI+KKYGG +SLK A VP PRLISSQELE FR HIE++RDR TGE FE+LDGL
Sbjct: 282  IPRVDLHAISKKYGGAISLKGAAVPAPRLISSQELEFFRPHIEMKRDRQTGEVFEVLDGL 341

Query: 543  MLKDGYLYKKVSIASIVFWGVQPSKDELLKFTE--MSKAEEEDVSWLSSVYNARK----- 701
            M KDG+LYK+V+++S+++WG+QP++ ELLKF+   +++A  +D+ W+SS+Y  +K     
Sbjct: 342  MFKDGFLYKRVALSSLIYWGIQPTETELLKFSSSPINRASADDLDWVSSIYGPKKRNIPA 401

Query: 702  ----------KMKSSEAADVKGASE---QGNGFNLHDLVLFGRKGFGVIIDLGKDGIKIL 842
                      KMKSS+ +    ++E     + FNLHDLVLFGRK FGVII + KDG +IL
Sbjct: 402  KPDIKSSSSSKMKSSKTSKASISTEDFDDNDEFNLHDLVLFGRKDFGVIIAIEKDGFRIL 461

Query: 843  KGDTAGQEVMTIKFEDIKSRCVDKMFTASDRHRKTIYINDSVKVSDGPLEGREGTVRHMY 1022
            KG   G  V T+K  DIK  CVDKMFTA DR  K + IND+V V +GP +G++G V+H+Y
Sbjct: 462  KGGPEGSAV-TVKKNDIKKSCVDKMFTAVDRQNKIVSINDTVNVLEGPFQGKQGVVKHLY 520

Query: 1023 KGTLFIYDENQEENSGLFCAKSDLCENITPPKDSSFRKGGNKSSSSFNQSPV---RSCEQ 1193
             G LFIY+E++ EN G FCA+   CEN+   KD     GG+ + +  N  P+    S EQ
Sbjct: 521  MGILFIYNESESENCGFFCAQCGSCENVKKRKD----LGGSTTENLDNPFPMFAEPSYEQ 576

Query: 1194 EDSSHTFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVE 1373
             +   T R  RS   Q FSIGQ LRIRKGPLKGYLCRVVRI+R+DVTVKLDSL+K++TV+
Sbjct: 577  NEHRGTERPYRSTREQLFSIGQMLRIRKGPLKGYLCRVVRIFRNDVTVKLDSLLKIVTVQ 636

Query: 1374 EQFLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASSSWQVLSTSTL 1553
             +FLS+P  + ++ +  P+  FG+Q+    G S   + +   GL    S SWQ  S+STL
Sbjct: 637  AEFLSVPANRGDNLSGAPAGNFGSQDTSFFG-SEAEKTSWDNGLPSFGSDSWQPFSSSTL 695

Query: 1554 FANNNVQKIEQEQGADPWGSKVSLAAGDHKP-------EADPWGSKSSVAAGDLGGSDPW 1712
                 VQ    E   DPW SK S A G+  P       + DPWG+K  VA    G SDPW
Sbjct: 696  ----PVQNTGGESENDPW-SKKSSAEGESDPWGKKTDGDPDPWGNK--VAHSADGDSDPW 748

Query: 1713 GSKLVPAARDHKQGADPWGSNNSISA-GDCEQGADPWGSNKSISAGDQGGTDPWGSKLLP 1889
            G+K+ P+A      +DPWG+  + SA GD    +DPWG  K +     G +D WG K   
Sbjct: 749  GNKVAPSA---DGDSDPWGNKVAPSAYGD----SDPWG--KKVVTPAHGDSDAWGKKTTS 799

Query: 1890 V--------ARDKEQGAD-AWGR-------NISGASTD------KEERADPWGGKTALGD 2003
                     A  KE  +D AWG+       + +G+S D      + E++D WG    + D
Sbjct: 800  SAVGVWNAGAAQKESSSDNAWGKQAGVGRSDAAGSSWDGTVVNKESEKSDNWGEACRVVD 859

Query: 2004 SSHSDKAFDSW---VKVSGTSGEMNSWNKS---EGGGFEKDGDGWNRPFVKT 2141
                  A D W   VK   T G  +SW K+        E    GW RP  K+
Sbjct: 860  MGTGADA-DPWGSKVKAIDTEG-TDSWEKATMPPDNKLEGVSQGWGRPLGKS 909



 Score = 79.7 bits (195), Expect = 2e-11
 Identities = 59/217 (27%), Positives = 93/217 (42%), Gaps = 7/217 (3%)
 Frame = +3

Query: 1500 GLWDGASSSWQVLS--TSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEA----DPW 1661
            G W G   +W   +  ++  ++++ V K   E     W S     + D+KP      DPW
Sbjct: 1160 GSW-GGGDNWNATNPPSNQPWSSSGVTKSFGENKPSTWNS-----SKDNKPSVGEQDDPW 1213

Query: 1662 GSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSIS 1841
             SK +   G    +D W SK+  A  +   G     + +S + G  E+  DPW +    +
Sbjct: 1214 ASKVASIEGKEQQNDTWASKMTSAGAEDNSGGWNTRAKDSCTDGGEERQNDPWANKAGTN 1273

Query: 1842 AGDQGGTDPWGSKLLPVARDKEQGADAWGRNISGASTDKEERA-DPWGGKTALGDSSHSD 2018
               +  TDPW SK +P +   +    +W  N +   T  EE+A DPW  K     S+ + 
Sbjct: 1274 KDKEQETDPWTSK-VPSSVGSDDNNSSW--NTTAKDTPSEEKAGDPWSSK----GSNDNI 1326

Query: 2019 KAFDSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRP 2129
            K  DSW   S    + +SW+K     F      W++P
Sbjct: 1327 KKTDSWGAGSSGGNQESSWSKP---NFSLGDQAWSKP 1360


>ref|XP_008656431.1| protein RNA-directed DNA methylation 3 isoform X1 [Zea mays]
 gb|AQK94714.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 1592

 Score =  633 bits (1633), Expect = 0.0
 Identities = 346/736 (47%), Positives = 474/736 (64%), Gaps = 30/736 (4%)
 Frame = +3

Query: 3    VGREQQMVLCLMHKYADLQRLGTKMEIISAFALEHVKGYVYIEADKACDVVEACKGFFNI 182
            VGRE+QM  C M K+ DL+++GTK+ II+AFAL+H++G+V++EA+KACDV EACKGF ++
Sbjct: 166  VGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFVFVEAEKACDVTEACKGFCSV 225

Query: 183  YATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYDDARKRATIKL 362
            Y +R+  VP+ E+P LLS+R KP  IS+GTW+RMKNGNYKGDL QVV  DD RK+  IK+
Sbjct: 226  YTSRITSVPAAEVPSLLSSRTKPFEISRGTWIRMKNGNYKGDLAQVVSVDDGRKKVMIKI 285

Query: 363  VPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIRRDRHTGEYFEILDGL 542
            VPR+DL AI+KK+GG VSLK A VP PRLISSQELE FR HIEI+RDR TGE FE+LDGL
Sbjct: 286  VPRVDLHAISKKFGGAVSLKGAAVPAPRLISSQELEFFRPHIEIKRDRQTGEVFEVLDGL 345

Query: 543  MLKDGYLYKKVSIASIVFWGVQPSKDELLKFTE--MSKAEEEDVSWLSSVYNARK----- 701
            M KDG+LYKKV+++S+++WG+QP++ ELLKF+    ++A  +D+ WLS +Y ++K     
Sbjct: 346  MFKDGFLYKKVALSSLIYWGIQPTETELLKFSSSPSNRASADDLDWLSGMYGSKKRNLPE 405

Query: 702  ---------KMKSSEAADVKGAS-----EQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKI 839
                     K++SS+A+D+K ++     ++ + FNLHDLVL+GRK FGVI+ + KDG +I
Sbjct: 406  KRDMESSSSKIRSSKASDLKASTSTENYDENDEFNLHDLVLYGRKDFGVIVAVEKDGFRI 465

Query: 840  LKGDTAGQEVMTIKFEDIKSRCVDKMFTASDRHRKTIYINDSVKVSDGPLEGREGTVRHM 1019
            LKG   G  V  ++ +DIK  CVDKMFTA D  +KTI IND+V V +GP +G++G V+H+
Sbjct: 466  LKGGPEGSAV-KVRKQDIKKGCVDKMFTAVDHQKKTISINDTVNVVEGPFQGKQGVVKHL 524

Query: 1020 YKGTLFIYDENQEENSGLFCAKSDLCENITPPKDSSFRKGGNKSSSSFNQSPVRSCEQED 1199
            Y G LFIY+E++ EN G FCA+S  CE I     SS  +  + ++  F   P  + EQ  
Sbjct: 525  YLGILFIYNESESENCGFFCAQSGSCEKIRKGLGSSTTESSDFTTPMF---PEPAYEQNG 581

Query: 1200 SSHTFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQ 1379
               T R  RS   Q FSIGQ LRIRKGPLKGYLCRVVRI+R+DVTVKLDSL+K++TV+  
Sbjct: 582  HRDTERPYRSTREQLFSIGQMLRIRKGPLKGYLCRVVRIFRNDVTVKLDSLLKIVTVQAD 641

Query: 1380 FLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASSSWQVLSTSTLFA 1559
             LS+P  + ++ +  P+  FG+Q+    G S  G+ +   GL    S SWQ  S+STL  
Sbjct: 642  LLSVPANRGDNLSGAPASKFGSQDTSFFG-SEAGKTSWDNGLPSFGSDSWQPFSSSTL-- 698

Query: 1560 NNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAAR 1739
              +VQ    E  ADPW  K S      K ++DPWG K+       G SD WG K      
Sbjct: 699  --SVQNAGGESEADPWSKKTSA-----KDDSDPWGKKTD------GDSDRWGKKT----- 740

Query: 1740 DHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKLLPVARDKEQGAD 1919
                 +DPWG   ++SA D +  ++PWG     SA   G +DPWG K++  A   +  +D
Sbjct: 741  --DGDSDPWG-KEAVSAADGD--SNPWGKETVPSAA--GDSDPWGKKVVSSA---DGDSD 790

Query: 1920 AWGRNISGASTDKEERAD---PWGGKTALGDSSHSDKAFDSWVK-VSGTSGEMNSWNKS- 2084
            +WG+  + ++ D E+       W  +  +G    SD A  SW + V   S + ++W ++ 
Sbjct: 791  SWGKKATSSAVDTEKEGSGGTAWDKQAGVGG---SDAAGSSWDRAVVNESEKSDNWGEAC 847

Query: 2085 ----EGGGFEKDGDGW 2120
                 G G E D D W
Sbjct: 848  RVMDMGTGAEADTDPW 863



 Score = 72.0 bits (175), Expect = 4e-09
 Identities = 59/230 (25%), Positives = 90/230 (39%), Gaps = 10/230 (4%)
 Frame = +3

Query: 1470 SGNGEQTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKP- 1646
            SG+G +  G G W+  +     + T +   N              W +     + D+KP 
Sbjct: 1129 SGDGPKWGGGGNWNATNPPSSSVGTKSYGQNQPFT----------WNN-----SEDNKPS 1173

Query: 1647 ---EADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGA-- 1811
               + DPW SK S        +D W SK++    +   G    G +  +    C  G   
Sbjct: 1174 VGEQGDPWASKVSSTEDTEQQNDSWSSKMISGGAEDTSG----GWDTKVKDSSCNDGGEG 1229

Query: 1812 ---DPWGSNKSISAGDQGGTDPWGSKL-LPVARDKEQGADAWGRNISGASTDKEERADPW 1979
               DPW +    + G +  TDPW SK+   V  D ++G  +W     G  + KE+  DPW
Sbjct: 1230 LQNDPWANKIGSNEGKEQETDPWASKMSSTVCADDKKG--SWNTTAKGIPS-KEKADDPW 1286

Query: 1980 GGKTALGDSSHSDKAFDSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRP 2129
              K    DS    K  D+W   S    +  SW+K      +++   WN P
Sbjct: 1287 NSKGGNDDS----KKTDTWGAGSSGGDQELSWSKPNFSLGDQEST-WNNP 1331



 Score = 62.0 bits (149), Expect = 5e-06
 Identities = 68/277 (24%), Positives = 104/277 (37%), Gaps = 37/277 (13%)
 Frame = +3

Query: 1410 SAAEMPSDIFG---------TQERLIGGLSGNGEQTVGAGLWDGASSSWQVLSTSTLFAN 1562
            S+A+  SD +G         T++   GG + + +  VG    D A SSW           
Sbjct: 783  SSADGDSDSWGKKATSSAVDTEKEGSGGTAWDKQAGVGGS--DAAGSSW----------- 829

Query: 1563 NNVQKIEQEQGADPWGS--KVSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAA 1736
             +   + + + +D WG   +V       + + DPWGSK  V A D+ G + W    VP  
Sbjct: 830  -DRAVVNESEKSDNWGEACRVMDMGTGAEADTDPWGSK--VKAVDMEGPNNWEKATVPPN 886

Query: 1737 RDHKQGADPWGSNNSISAGD---------------CEQGA-----DPWGSNKSISAGDQG 1856
               +  +  WG     S  D               C+          WG +K  S G  G
Sbjct: 887  NKLEDVSQGWGQPKGNSTEDQAIDNVSKDVDNNRACDSSLPVTEDGTWGKSKDNSCGGAG 946

Query: 1857 GTDPWG------SKLLPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSD 2018
            G   W       +K   VA  +++G   WG+  + +S + EE  +  G     G S  + 
Sbjct: 947  GAGGWDVSVGNWNKSSVVADAQDEG---WGKG-NWSSAESEETNNQSGNWNKTGASDQA- 1001

Query: 2019 KAFDSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRP 2129
              +++W K     G  N WNK      +     WNRP
Sbjct: 1002 -GYNNWDKPKSFGG--NGWNKG-----DDQNSSWNRP 1030


>gb|AQK87074.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 1450

 Score =  620 bits (1600), Expect = 0.0
 Identities = 350/757 (46%), Positives = 476/757 (62%), Gaps = 49/757 (6%)
 Frame = +3

Query: 3    VGREQQMVLCLMHKYADLQRLGTKMEIISAFALEHVKGYVYIEADKACDVVEACKGFFNI 182
            VGRE+QM  C M K+ DL+++GTK+ II+AFAL+H++G+V++EA+KA  V EACKGF ++
Sbjct: 17   VGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFVFVEAEKAGYVTEACKGFCSV 76

Query: 183  YATRMGLVPSIEIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYDDARKRATIKL 362
            Y +R+  VP+ E+P LLS+R KP  IS+GTW+RMKNGNYKGDL QVV+ D  RK+  IK+
Sbjct: 77   YTSRITSVPATEVPSLLSSRTKPFEISRGTWIRMKNGNYKGDLAQVVNMDSGRKKVMIKI 136

Query: 363  VPRIDLQAIAKKYGGGVSLKEAGVPVPRLISSQELEHFRSHIEIRRDRHTGEYFEILDGL 542
            +PR+DL AI+KK+GG VSLKEA VP PRLISSQELE FR HIEI+RDR TGE FE+LDGL
Sbjct: 137  IPRVDLHAISKKFGGAVSLKEAAVPAPRLISSQELEFFRPHIEIKRDRQTGEVFEVLDGL 196

Query: 543  MLKDGYLYKKVSIASIVFWGVQPSKDELLKFTE--MSKAEEEDVSWLSSVYNARK----- 701
            M KDG+LYKKV+++S+++WG+QP++ ELLKF+    ++A  +D+ WLS +Y ++K     
Sbjct: 197  MFKDGFLYKKVALSSLIYWGIQPTETELLKFSSSPSNRASADDLDWLSGMYGSKKRNLPA 256

Query: 702  ---------KMKSSEAADVKGAS-----EQGNGFNLHDLVLFGRKGFGVIIDLGKDGIKI 839
                     K+KSS+A D+KG++     +  + FNLHDLVL+GRK FGVII + KDG +I
Sbjct: 257  ERDMKSSSSKIKSSKAPDLKGSTSTENYDDNDEFNLHDLVLYGRKDFGVIIAVEKDGFRI 316

Query: 840  LKGDTAGQEVMTIKFEDIKSRCVDKMFTASDRHRKTIYINDSVKVSDGPLEGREGTVRHM 1019
            LKG   G  V T++ +DIK  CVDKMFTA D H+KTI IND+V V +GP +G++G V+H+
Sbjct: 317  LKGGPEGSAV-TVRKQDIKKGCVDKMFTAVDHHKKTISINDTVNVVEGPFQGKQGLVKHL 375

Query: 1020 YKGTLFIYDENQEENSGLFCAKSDLCENITPPKDSSFRKGGNKSSSSFNQSPVRSCEQED 1199
            Y G LFI++E++ EN G FCA+S  CE I     SS  +  +  +  F++    + EQ +
Sbjct: 376  YLGILFIFNESESENCGFFCAQSGSCEKIRKGLGSSTTENSDFPTPMFSEP---AYEQNE 432

Query: 1200 SSHTFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQ 1379
              +T    RS   Q FSIGQ LRIRKGPLKGYLCRVVRI+R+DVTVKLDSL+K++TV+  
Sbjct: 433  HRNTEGPYRSTREQLFSIGQMLRIRKGPLKGYLCRVVRIFRNDVTVKLDSLLKIVTVQAD 492

Query: 1380 FLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASSSWQVLSTSTLFA 1559
             LS+P  + ++ +  P+  FG+Q+    G S  G+ +   GL    S SWQ  S+STL  
Sbjct: 493  LLSVPANRGDNLSGAPASKFGSQDTPFFG-SEAGKTSWDRGLPSFGSDSWQPFSSSTL-- 549

Query: 1560 NNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAAR 1739
               VQ    E  ADPW  K S      + ++DPWG K+       G SDPWG + V AA 
Sbjct: 550  --PVQNAGAESEADPWCKKTSA-----EDDSDPWGKKTD------GDSDPWGKEAVSAA- 595

Query: 1740 DHKQGADPWGSNNSIS-AGDCEQGADPWGSNKSISAGDQGGTDPWGSKLLPVA------- 1895
                  +PWG     S AGD    +DPWG  K + + D G +DPWG K +  A       
Sbjct: 596  --DGDCNPWGKETVPSAAGD----SDPWG--KKVFSAD-GDSDPWGKKAISSAVEVWNTS 646

Query: 1896 --RDKEQGADAW-------GRNISGASTDK------EERADPWGGKTALGD--SSHSDKA 2024
              + +    +AW       G + +G+S D+       E++D WG    + D  +      
Sbjct: 647  ATQKEGSSGNAWDKQAGVGGSDAAGSSWDRAVVNKESEKSDNWGEACRVMDMGTGADTDP 706

Query: 2025 FDSWVKVSGTSGEMNSWNKS---EGGGFEKDGDGWNR 2126
            + S VK     G  NSW K+        E    GWN+
Sbjct: 707  WGSKVKAVDMEGP-NSWEKATMPPDNKLEDVSQGWNQ 742



 Score = 67.8 bits (164), Expect = 8e-08
 Identities = 48/155 (30%), Positives = 65/155 (41%), Gaps = 6/155 (3%)
 Frame = +3

Query: 1635 DHKP----EADPWGSKSSVAAGDLGGSDPWGSKLVP-AARDHKQGADPWGSNNSISAGDC 1799
            D+KP    + DPW SK S   G    +D W SK+    A D   G D     +S + G  
Sbjct: 1000 DNKPSVGEQGDPWASKVSSTEGKGQQNDSWSSKMTSRGAEDTSGGWDSKEKGSSCNGGGE 1059

Query: 1800 EQGADPWGSNKSISAGDQGGTDPWGSKL-LPVARDKEQGADAWGRNISGASTDKEERADP 1976
                DPW +    + G +   DPW SK+   V  D + G   W     G +   E+  DP
Sbjct: 1060 GLQNDPWANKIGSNEGKEQEADPWASKMSSAVGADDKNG--TWDTTTKG-TLSNEKADDP 1116

Query: 1977 WGGKTALGDSSHSDKAFDSWVKVSGTSGEMNSWNK 2081
            W  K    D S   K  D+W   S    + +SW+K
Sbjct: 1117 WNSKRGNDDDS---KKTDAWGAGSSGGNQESSWSK 1148