BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00009703
         (673 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PKA49631.1| E3 ubiquitin-protein ligase RFWD2 [Apostasia shen...    57   3e-06

>gb|PKA49631.1| E3 ubiquitin-protein ligase RFWD2 [Apostasia shenzhenica]
          Length = 206

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 46/104 (44%), Positives = 59/104 (56%), Gaps = 13/104 (12%)
 Frame = -1

Query: 484 MEAPAI-RRRMTLSDQLSVLQPTSNLRDLLKF---XXXXXXXXXRTGPAVTLATVLEAEK 317
           ME   I R RMTL DQ+SV++P SNLRDLLK               G AVTLA++LE+EK
Sbjct: 1   MEGDGIGRSRMTLLDQISVMEP-SNLRDLLKVGQDDDASVAGVPSVGRAVTLASILESEK 59

Query: 316 NAXXXXXXXGRTLLDVIREE---------ESRDAGGGSSSRWRD 212
           ++       GRTLLD+I+EE         ES D+ GG +   R+
Sbjct: 60  HS-------GRTLLDIIQEEDESLGDALPESSDSTGGGTPPERE 96