BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00008729
         (1162 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020253401.1| DNA-directed RNA polymerases II and IV subun...   296   1e-96
ref|XP_020100932.1| DNA-directed RNA polymerases II and IV subun...   272   3e-87
ref|XP_020254663.1| DNA-directed RNA polymerases II and IV subun...   271   5e-87
gb|PKA55370.1| hypothetical protein AXF42_Ash004009 [Apostasia s...   267   2e-85
ref|XP_008801856.1| PREDICTED: DNA-directed RNA polymerases II a...   266   3e-85
ref|XP_020532058.1| DNA-directed RNA polymerases II and IV subun...   266   9e-85
ref|XP_010928511.1| PREDICTED: DNA-directed RNA polymerases II a...   265   9e-85
ref|XP_018815016.1| PREDICTED: DNA-directed RNA polymerases II a...   265   2e-84
ref|XP_006858910.1| DNA-directed RNA polymerases II and IV subun...   265   2e-84
ref|XP_010930084.1| PREDICTED: DNA-directed RNA polymerases II a...   264   3e-84
ref|XP_018829461.1| PREDICTED: DNA-directed RNA polymerases II a...   264   4e-84
gb|AFK41303.1| unknown [Medicago truncatula]                          263   8e-84
gb|OAY80387.1| DNA-directed RNA polymerases II and IV subunit 5A...   263   8e-84
ref|XP_022959553.1| DNA-directed RNA polymerases II and IV subun...   261   3e-83
ref|XP_003610652.2| DNA-directed RNA polymerase II [Medicago tru...   261   3e-83
ref|XP_004511874.1| PREDICTED: DNA-directed RNA polymerases II a...   261   3e-83
ref|XP_020101892.1| DNA-directed RNA polymerases II and IV subun...   261   5e-83
ref|XP_020214903.1| DNA-directed RNA polymerases II and IV subun...   261   5e-83
dbj|GAV91188.1| RNA_pol_Rpb5_C domain-containing protein/RNA_pol...   261   6e-83
gb|OVA00057.1| RNA polymerase [Macleaya cordata]                      260   9e-83

>ref|XP_020253401.1| DNA-directed RNA polymerases II and IV subunit 5A-like [Asparagus
            officinalis]
 gb|ONK77730.1| uncharacterized protein A4U43_C02F9950 [Asparagus officinalis]
          Length = 206

 Score =  296 bits (757), Expect = 1e-96
 Identities = 145/207 (70%), Positives = 174/207 (84%)
 Frame = -3

Query: 1052 MAASEESMRLFRIRKNVMEMLKDRGYLVLDVELSMDYKQFKDKFGDSIRRDDLTINKAKK 873
            MAASEE ++LFRIRKN++EML DRGY+V D ELSMD+KQF+DKFG+S +R+DL INK K+
Sbjct: 1    MAASEEEVKLFRIRKNILEMLSDRGYVVADEELSMDFKQFRDKFGESFKREDLLINKYKR 60

Query: 872  DNPLDQIYVIFTNDERIGAKHIKVYLERMMQEKVFRTILVLQHKLTPFANRAIHDQEVTR 693
            DNP DQIYV F ND ++GA HIK Y ERM Q+ VF+ I+V+Q +++ FA + I DQ   +
Sbjct: 61   DNPSDQIYVFFPNDPKVGASHIKRYAERMKQDSVFKAIVVVQ-QISSFAKKGIQDQSFAQ 119

Query: 692  RFHVEAFLEAELLVNINRHMLVPEHQVLSDEEKKALLEWYHLKDTQLPRIQLTDPVARYH 513
            +F VE F EAEL+VNI++HMLVP HQVLSD EKKALLE YHLK+TQLPRIQL DPVARYH
Sbjct: 120  KFRVEIFQEAELVVNISKHMLVPPHQVLSDNEKKALLERYHLKETQLPRIQLDDPVARYH 179

Query: 512  GLRRGQVVKIIRPSETAGRYITYRLVV 432
            GL+RGQVVKIIRPS+TAGRYITYR VV
Sbjct: 180  GLQRGQVVKIIRPSDTAGRYITYRYVV 206


>ref|XP_020100932.1| DNA-directed RNA polymerases II and IV subunit 5A [Ananas comosus]
 gb|OAY71099.1| DNA-directed RNA polymerases II and IV subunit 5A [Ananas comosus]
          Length = 205

 Score =  272 bits (695), Expect = 3e-87
 Identities = 133/207 (64%), Positives = 169/207 (81%)
 Frame = -3

Query: 1052 MAASEESMRLFRIRKNVMEMLKDRGYLVLDVELSMDYKQFKDKFGDSIRRDDLTINKAKK 873
            MA+ +E  RLFRIR+ VM++L+DRGYLVLDVE+ M+ +QF DKFG+++RR+DL INKAKK
Sbjct: 1    MASDDEISRLFRIRRTVMQILRDRGYLVLDVEIEMNKRQFLDKFGEAVRREDLVINKAKK 60

Query: 872  DNPLDQIYVIFTNDERIGAKHIKVYLERMMQEKVFRTILVLQHKLTPFANRAIHDQEVTR 693
            ++P DQIYV F  + ++G K IK Y+ERM  E V R ILV Q  LTPFA  ++   EV++
Sbjct: 61   NDPSDQIYVFFPEEPKVGVKQIKQYIERMKAENVMRGILVAQQNLTPFARSSL--LEVSQ 118

Query: 692  RFHVEAFLEAELLVNINRHMLVPEHQVLSDEEKKALLEWYHLKDTQLPRIQLTDPVARYH 513
            ++H+E F EAELLVNI  H+LVPEHQ+L+ EEKK LLE Y +K+TQLPRIQ+TDP+ARY+
Sbjct: 119  KYHLEVFQEAELLVNIKEHVLVPEHQLLTPEEKKTLLERYTVKETQLPRIQVTDPIARYY 178

Query: 512  GLRRGQVVKIIRPSETAGRYITYRLVV 432
            GL+RGQVVKIIRPSETAGRY+TYR VV
Sbjct: 179  GLKRGQVVKIIRPSETAGRYVTYRYVV 205


>ref|XP_020254663.1| DNA-directed RNA polymerases II and IV subunit 5A [Asparagus
            officinalis]
 gb|ONK78506.1| uncharacterized protein A4U43_C02F19500 [Asparagus officinalis]
          Length = 205

 Score =  271 bits (693), Expect = 5e-87
 Identities = 134/207 (64%), Positives = 167/207 (80%)
 Frame = -3

Query: 1052 MAASEESMRLFRIRKNVMEMLKDRGYLVLDVELSMDYKQFKDKFGDSIRRDDLTINKAKK 873
            MA  + + RLFRIR+ VMEML+DRGYLV+D E+ M   +F +KFG+ ++R+DL I+K+KK
Sbjct: 1    MAEDQTASRLFRIRRTVMEMLRDRGYLVVDYEVKMSKNEFLNKFGEGVKREDLMISKSKK 60

Query: 872  DNPLDQIYVIFTNDERIGAKHIKVYLERMMQEKVFRTILVLQHKLTPFANRAIHDQEVTR 693
            ++P DQIYV F ND+++G KHIK Y+E M  + V R ILV+Q  LTPFA    H QE++ 
Sbjct: 61   NDPTDQIYVFFPNDDKVGMKHIKKYVELMKSDNVPRAILVVQQNLTPFAKA--HLQELSP 118

Query: 692  RFHVEAFLEAELLVNINRHMLVPEHQVLSDEEKKALLEWYHLKDTQLPRIQLTDPVARYH 513
            +FH+E FLEAELLVNI  H+LVPEHQVL+ EEKK LLE Y LK+TQLPRIQ+TDPVARY+
Sbjct: 119  KFHLEVFLEAELLVNIKEHVLVPEHQVLTAEEKKTLLERYTLKETQLPRIQITDPVARYY 178

Query: 512  GLRRGQVVKIIRPSETAGRYITYRLVV 432
            GL+RGQVVKIIRPSETAGRY+TYR VV
Sbjct: 179  GLKRGQVVKIIRPSETAGRYVTYRYVV 205


>gb|PKA55370.1| hypothetical protein AXF42_Ash004009 [Apostasia shenzhenica]
          Length = 204

 Score =  267 bits (683), Expect = 2e-85
 Identities = 132/203 (65%), Positives = 163/203 (80%)
 Frame = -3

Query: 1040 EESMRLFRIRKNVMEMLKDRGYLVLDVELSMDYKQFKDKFGDSIRRDDLTINKAKKDNPL 861
            E++ RL+RIR+ VMEML+DRGYLV+D E+ M   +F  KFG+S++R+DL INKAKK+NP 
Sbjct: 4    EQTSRLYRIRRTVMEMLRDRGYLVVDFEIRMSKMEFIHKFGESVKREDLIINKAKKNNPS 63

Query: 860  DQIYVIFTNDERIGAKHIKVYLERMMQEKVFRTILVLQHKLTPFANRAIHDQEVTRRFHV 681
            DQIYV F NDE++G KHIK Y+E M  E V R +LV+Q  LTPFA   +  QE+  ++H+
Sbjct: 64   DQIYVFFPNDEKVGMKHIKKYVELMKSENVPRALLVVQQNLTPFARSYL--QELVPKYHL 121

Query: 680  EAFLEAELLVNINRHMLVPEHQVLSDEEKKALLEWYHLKDTQLPRIQLTDPVARYHGLRR 501
            E F EAELLVNI  H+LVPEHQVL+ EEKK LLE Y LK+TQLPRIQ+ DP+ARY+GL+R
Sbjct: 122  EVFQEAELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQVIDPIARYYGLKR 181

Query: 500  GQVVKIIRPSETAGRYITYRLVV 432
            GQVVKIIRPSETAGRY+TYR VV
Sbjct: 182  GQVVKIIRPSETAGRYVTYRYVV 204


>ref|XP_008801856.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
            [Phoenix dactylifera]
 ref|XP_008801857.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
            [Phoenix dactylifera]
          Length = 204

 Score =  266 bits (681), Expect = 3e-85
 Identities = 132/199 (66%), Positives = 164/199 (82%)
 Frame = -3

Query: 1028 RLFRIRKNVMEMLKDRGYLVLDVELSMDYKQFKDKFGDSIRRDDLTINKAKKDNPLDQIY 849
            RLFRIR+ VM+ML+DRGYLVLD+E++M+  QF +KFG+ ++RDDL INKAKK++P DQIY
Sbjct: 8    RLFRIRRTVMQMLRDRGYLVLDLEINMNKNQFLEKFGEGVKRDDLVINKAKKNDPADQIY 67

Query: 848  VIFTNDERIGAKHIKVYLERMMQEKVFRTILVLQHKLTPFANRAIHDQEVTRRFHVEAFL 669
            V F ND ++G K IK Y+ERM  E V R ILV+Q  LTPFA +++   EV +++ +E F 
Sbjct: 68   VFFPNDAKVGVKQIKQYVERMKAENVVRGILVVQQALTPFAKQSL--TEVAQKYLLEVFQ 125

Query: 668  EAELLVNINRHMLVPEHQVLSDEEKKALLEWYHLKDTQLPRIQLTDPVARYHGLRRGQVV 489
            +AELLVNI  H+LVPEHQVL+ EEKK LLE Y LK+TQLPRIQ+TDPVARY+GL+RGQVV
Sbjct: 126  DAELLVNIKDHVLVPEHQVLTSEEKKTLLERYTLKETQLPRIQVTDPVARYYGLKRGQVV 185

Query: 488  KIIRPSETAGRYITYRLVV 432
            KIIRPSETAGRY+TYR VV
Sbjct: 186  KIIRPSETAGRYVTYRYVV 204


>ref|XP_020532058.1| DNA-directed RNA polymerases II and IV subunit 5A isoform X1
            [Amborella trichopoda]
          Length = 223

 Score =  266 bits (680), Expect = 9e-85
 Identities = 129/214 (60%), Positives = 168/214 (78%), Gaps = 1/214 (0%)
 Frame = -3

Query: 1070 RPRAGSMAA-SEESMRLFRIRKNVMEMLKDRGYLVLDVELSMDYKQFKDKFGDSIRRDDL 894
            R + G M+   +++ +LFRIR+ +M+ML+DRGYLV D E++M   QF +KFGD +++DDL
Sbjct: 12   RRKEGEMSGMDDQTSKLFRIRRTLMQMLRDRGYLVGDFEINMTKAQFIEKFGDEVKKDDL 71

Query: 893  TINKAKKDNPLDQIYVIFTNDERIGAKHIKVYLERMMQEKVFRTILVLQHKLTPFANRAI 714
             INK  ++NP +QIYV F  ++++G K +K Y ERM  E VFR ILVLQ  LTPFA + +
Sbjct: 72   VINKTMRNNPSEQIYVFFPEEQKVGVKTVKTYTERMKSENVFRAILVLQQNLTPFARQCV 131

Query: 713  HDQEVTRRFHVEAFLEAELLVNINRHMLVPEHQVLSDEEKKALLEWYHLKDTQLPRIQLT 534
              QE++ +FH+E F E+ELLVNI  H+LVPEHQVL+ EEKK LLE Y LK+TQLPRIQ+T
Sbjct: 132  --QEISAKFHLEIFQESELLVNIKEHVLVPEHQVLTSEEKKTLLERYTLKETQLPRIQIT 189

Query: 533  DPVARYHGLRRGQVVKIIRPSETAGRYITYRLVV 432
            DP+ARY+GL+RGQVVKIIRPSETAGRY+TYR VV
Sbjct: 190  DPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 223


>ref|XP_010928511.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Elaeis
            guineensis]
 ref|XP_010928512.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Elaeis
            guineensis]
          Length = 204

 Score =  265 bits (678), Expect = 9e-85
 Identities = 129/205 (62%), Positives = 168/205 (81%)
 Frame = -3

Query: 1046 ASEESMRLFRIRKNVMEMLKDRGYLVLDVELSMDYKQFKDKFGDSIRRDDLTINKAKKDN 867
            + ++  RLFRIR+ VM+ML+DRGYLVLD+E++M+ +QF +KFG+ ++R+DL INKAKK++
Sbjct: 2    SEDDISRLFRIRRTVMQMLRDRGYLVLDLEINMNKRQFLEKFGEGVKREDLVINKAKKND 61

Query: 866  PLDQIYVIFTNDERIGAKHIKVYLERMMQEKVFRTILVLQHKLTPFANRAIHDQEVTRRF 687
            P DQIYV F ND ++G K IK Y+ERM  E V R ILV+Q  LTPFA +++   EV+ ++
Sbjct: 62   PADQIYVFFPNDAKVGVKQIKQYVERMKAENVVRGILVVQQALTPFARQSL--AEVSHKY 119

Query: 686  HVEAFLEAELLVNINRHMLVPEHQVLSDEEKKALLEWYHLKDTQLPRIQLTDPVARYHGL 507
             +E F ++ELLVNI  H+LVPEHQVL+ EEKK LLE Y LK+TQLPRIQ+TDP+ARY+GL
Sbjct: 120  MLEVFQDSELLVNIKEHVLVPEHQVLTAEEKKTLLERYTLKETQLPRIQVTDPIARYYGL 179

Query: 506  RRGQVVKIIRPSETAGRYITYRLVV 432
            +RGQVVKIIRPSETAGRY+TYR VV
Sbjct: 180  KRGQVVKIIRPSETAGRYVTYRYVV 204


>ref|XP_018815016.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
            [Juglans regia]
 ref|XP_018815026.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
            [Juglans regia]
 ref|XP_018815034.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
            [Juglans regia]
          Length = 206

 Score =  265 bits (676), Expect = 2e-84
 Identities = 129/207 (62%), Positives = 166/207 (80%)
 Frame = -3

Query: 1052 MAASEESMRLFRIRKNVMEMLKDRGYLVLDVELSMDYKQFKDKFGDSIRRDDLTINKAKK 873
            M + EE  RLFRIR+ VM+MLKDRGY V D E+ M  +QFKDK+G+S++R+DL INKAK+
Sbjct: 2    MLSEEEITRLFRIRRTVMQMLKDRGYFVGDFEIDMTKEQFKDKYGESMKREDLVINKAKR 61

Query: 872  DNPLDQIYVIFTNDERIGAKHIKVYLERMMQEKVFRTILVLQHKLTPFANRAIHDQEVTR 693
            ++  DQIY+ F ++ ++G K +K Y +RM  E VFR ILV+Q  LTPFA  +I   E++ 
Sbjct: 62   NDSSDQIYIFFPDEPKVGVKTMKTYSQRMKSENVFRAILVVQQNLTPFARSSI--SEIST 119

Query: 692  RFHVEAFLEAELLVNINRHMLVPEHQVLSDEEKKALLEWYHLKDTQLPRIQLTDPVARYH 513
            +FH+E F EAELL+NI  H+LVPEHQVL++EEKK LLE Y +K+TQLPR+Q+TDPVARY+
Sbjct: 120  KFHLEVFQEAELLINIKDHVLVPEHQVLTNEEKKTLLERYTVKETQLPRMQVTDPVARYY 179

Query: 512  GLRRGQVVKIIRPSETAGRYITYRLVV 432
            GL+RGQVVKIIRPSETAGRY+TYR VV
Sbjct: 180  GLKRGQVVKIIRPSETAGRYVTYRYVV 206


>ref|XP_006858910.1| DNA-directed RNA polymerases II and IV subunit 5A isoform X2
            [Amborella trichopoda]
 ref|XP_020532059.1| DNA-directed RNA polymerases II and IV subunit 5A isoform X2
            [Amborella trichopoda]
 gb|ERN20377.1| hypothetical protein AMTR_s00068p00034280 [Amborella trichopoda]
          Length = 206

 Score =  265 bits (676), Expect = 2e-84
 Identities = 126/203 (62%), Positives = 163/203 (80%)
 Frame = -3

Query: 1040 EESMRLFRIRKNVMEMLKDRGYLVLDVELSMDYKQFKDKFGDSIRRDDLTINKAKKDNPL 861
            +++ +LFRIR+ +M+ML+DRGYLV D E++M   QF +KFGD +++DDL INK  ++NP 
Sbjct: 6    DQTSKLFRIRRTLMQMLRDRGYLVGDFEINMTKAQFIEKFGDEVKKDDLVINKTMRNNPS 65

Query: 860  DQIYVIFTNDERIGAKHIKVYLERMMQEKVFRTILVLQHKLTPFANRAIHDQEVTRRFHV 681
            +QIYV F  ++++G K +K Y ERM  E VFR ILVLQ  LTPFA + +  QE++ +FH+
Sbjct: 66   EQIYVFFPEEQKVGVKTVKTYTERMKSENVFRAILVLQQNLTPFARQCV--QEISAKFHL 123

Query: 680  EAFLEAELLVNINRHMLVPEHQVLSDEEKKALLEWYHLKDTQLPRIQLTDPVARYHGLRR 501
            E F E+ELLVNI  H+LVPEHQVL+ EEKK LLE Y LK+TQLPRIQ+TDP+ARY+GL+R
Sbjct: 124  EIFQESELLVNIKEHVLVPEHQVLTSEEKKTLLERYTLKETQLPRIQITDPIARYYGLKR 183

Query: 500  GQVVKIIRPSETAGRYITYRLVV 432
            GQVVKIIRPSETAGRY+TYR VV
Sbjct: 184  GQVVKIIRPSETAGRYVTYRYVV 206


>ref|XP_010930084.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Elaeis
            guineensis]
 ref|XP_010930085.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Elaeis
            guineensis]
 ref|XP_010930086.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Elaeis
            guineensis]
          Length = 204

 Score =  264 bits (675), Expect = 3e-84
 Identities = 129/205 (62%), Positives = 167/205 (81%)
 Frame = -3

Query: 1046 ASEESMRLFRIRKNVMEMLKDRGYLVLDVELSMDYKQFKDKFGDSIRRDDLTINKAKKDN 867
            + ++  RLFRIR+ VM+ML+DRGYLVLD+E++M+  QF +KFG+ ++R+DL INKAKK++
Sbjct: 2    SEDDISRLFRIRRTVMQMLRDRGYLVLDLEINMNKLQFLEKFGEGVKREDLVINKAKKND 61

Query: 866  PLDQIYVIFTNDERIGAKHIKVYLERMMQEKVFRTILVLQHKLTPFANRAIHDQEVTRRF 687
            P DQIYV F ND ++G K IK Y+ERM  E V R ILV+Q  LTPFA +++   EV++++
Sbjct: 62   PADQIYVFFPNDAKVGVKQIKQYVERMKAENVTRGILVVQQALTPFARQSL--AEVSQKY 119

Query: 686  HVEAFLEAELLVNINRHMLVPEHQVLSDEEKKALLEWYHLKDTQLPRIQLTDPVARYHGL 507
             +E F + ELLVNI  H+LVPEHQVL+ EEKK LLE Y LK+TQLPRIQ+TDP+ARY+GL
Sbjct: 120  MLEVFQDTELLVNIKEHVLVPEHQVLTSEEKKTLLERYTLKETQLPRIQVTDPIARYYGL 179

Query: 506  RRGQVVKIIRPSETAGRYITYRLVV 432
            +RGQVVKIIRPSETAGRY+TYR VV
Sbjct: 180  KRGQVVKIIRPSETAGRYVTYRYVV 204


>ref|XP_018829461.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
            [Juglans regia]
 ref|XP_018829463.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
            [Juglans regia]
 ref|XP_018829464.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
            [Juglans regia]
          Length = 206

 Score =  264 bits (674), Expect = 4e-84
 Identities = 128/205 (62%), Positives = 165/205 (80%)
 Frame = -3

Query: 1046 ASEESMRLFRIRKNVMEMLKDRGYLVLDVELSMDYKQFKDKFGDSIRRDDLTINKAKKDN 867
            + EE  RLFRIR+ VM+MLKDRGY V D E+ M  +QFK+K+G+S++R+DL INK+K++N
Sbjct: 4    SEEEITRLFRIRRTVMQMLKDRGYFVGDFEIDMTKEQFKNKYGESMKREDLVINKSKRNN 63

Query: 866  PLDQIYVIFTNDERIGAKHIKVYLERMMQEKVFRTILVLQHKLTPFANRAIHDQEVTRRF 687
              DQIY+ F  + ++G K +K Y +RM  E VFR ILV+Q  LTPFA  +I+  E++ +F
Sbjct: 64   SSDQIYIFFPEEPKVGVKTMKTYSQRMKSENVFRAILVVQQNLTPFARSSIN--EISTKF 121

Query: 686  HVEAFLEAELLVNINRHMLVPEHQVLSDEEKKALLEWYHLKDTQLPRIQLTDPVARYHGL 507
            H+E F EAELL+NI  H+LVPEHQVL++EEKK LLE Y +K+TQLPRIQ+TDPVARY+GL
Sbjct: 122  HLEVFQEAELLINIKEHVLVPEHQVLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYGL 181

Query: 506  RRGQVVKIIRPSETAGRYITYRLVV 432
            +RGQVVKIIRPSETAGRY+TYR VV
Sbjct: 182  KRGQVVKIIRPSETAGRYVTYRYVV 206


>gb|AFK41303.1| unknown [Medicago truncatula]
          Length = 206

 Score =  263 bits (672), Expect = 8e-84
 Identities = 130/205 (63%), Positives = 158/205 (77%)
 Frame = -3

Query: 1046 ASEESMRLFRIRKNVMEMLKDRGYLVLDVELSMDYKQFKDKFGDSIRRDDLTINKAKKDN 867
            + EE  RL+RIRK VM+MLKDR YLV D EL+M    FKDK+G++++R+DL INK KKD 
Sbjct: 4    SEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTKKDK 63

Query: 866  PLDQIYVIFTNDERIGAKHIKVYLERMMQEKVFRTILVLQHKLTPFANRAIHDQEVTRRF 687
            P DQIYV F  + ++G K +K Y  RM  E V+R ILV Q  LTPFA   +   E+  +F
Sbjct: 64   PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCV--SEIASKF 121

Query: 686  HVEAFLEAELLVNINRHMLVPEHQVLSDEEKKALLEWYHLKDTQLPRIQLTDPVARYHGL 507
            H+E F EAELLVNI  H+LVPEHQ+L+D EKK LLE Y +K+TQLPRIQ+TDPVARY+GL
Sbjct: 122  HLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYGL 181

Query: 506  RRGQVVKIIRPSETAGRYITYRLVV 432
            +RGQVVKIIRPSETAGRY+TYRLVV
Sbjct: 182  KRGQVVKIIRPSETAGRYVTYRLVV 206


>gb|OAY80387.1| DNA-directed RNA polymerases II and IV subunit 5A [Ananas comosus]
          Length = 206

 Score =  263 bits (672), Expect = 8e-84
 Identities = 135/200 (67%), Positives = 161/200 (80%), Gaps = 1/200 (0%)
 Frame = -3

Query: 1028 RLFRIRKNVMEMLKDRGYLVLDVELSMDYKQFKDKFG-DSIRRDDLTINKAKKDNPLDQI 852
            RLFRIR+ VM+ML+DRGYLVLD E++M   +F  KFG DSIRRDDL INK+KK++P DQI
Sbjct: 9    RLFRIRRTVMQMLRDRGYLVLDFEINMSKAEFLHKFGPDSIRRDDLLINKSKKNDPADQI 68

Query: 851  YVIFTNDERIGAKHIKVYLERMMQEKVFRTILVLQHKLTPFANRAIHDQEVTRRFHVEAF 672
            YV F NDE++G KHIK Y+E M  E V R +LVLQ  LTPFA   +  QE++ +F +E F
Sbjct: 69   YVFFPNDEKVGMKHIKKYVELMKAESVPRAMLVLQLNLTPFAKSYL--QEISPKFFLEVF 126

Query: 671  LEAELLVNINRHMLVPEHQVLSDEEKKALLEWYHLKDTQLPRIQLTDPVARYHGLRRGQV 492
             EAELLVNI  H LVPEHQVL+ +EKK LLE Y LK+TQLPRIQ+TDP+ARY+GL+RGQV
Sbjct: 127  QEAELLVNIKDHALVPEHQVLTSQEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQV 186

Query: 491  VKIIRPSETAGRYITYRLVV 432
            VKIIRPSETAGRY+TYR VV
Sbjct: 187  VKIIRPSETAGRYVTYRFVV 206


>ref|XP_022959553.1| DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita
            moschata]
 ref|XP_022959554.1| DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita
            moschata]
 ref|XP_022959555.1| DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita
            moschata]
 ref|XP_023004795.1| DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita
            maxima]
 ref|XP_023004796.1| DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita
            maxima]
 ref|XP_023004797.1| DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita
            maxima]
 ref|XP_023513561.1| DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita
            pepo subsp. pepo]
 ref|XP_023513563.1| DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita
            pepo subsp. pepo]
          Length = 206

 Score =  261 bits (668), Expect = 3e-83
 Identities = 128/205 (62%), Positives = 162/205 (79%)
 Frame = -3

Query: 1046 ASEESMRLFRIRKNVMEMLKDRGYLVLDVELSMDYKQFKDKFGDSIRRDDLTINKAKKDN 867
            A EE  RLFR+RK V++MLKDRGY V D E+ M  +QFK+K+G+S++R+D+ INKAK+++
Sbjct: 4    AEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAKRND 63

Query: 866  PLDQIYVIFTNDERIGAKHIKVYLERMMQEKVFRTILVLQHKLTPFANRAIHDQEVTRRF 687
              DQIY+ F  + ++G K +K Y  RM  E VFR ILV+Q  LTPFA   I   E++ +F
Sbjct: 64   SSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI--SEISTKF 121

Query: 686  HVEAFLEAELLVNINRHMLVPEHQVLSDEEKKALLEWYHLKDTQLPRIQLTDPVARYHGL 507
            H+E F EAELLVNI  H+LVPEHQ+LS+EEKK LLE Y +K+TQLPRIQ+TDPVARY+GL
Sbjct: 122  HLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYGL 181

Query: 506  RRGQVVKIIRPSETAGRYITYRLVV 432
            +RGQVVKIIRPSETAGRY+TYR VV
Sbjct: 182  KRGQVVKIIRPSETAGRYVTYRYVV 206


>ref|XP_003610652.2| DNA-directed RNA polymerase II [Medicago truncatula]
 gb|AES93610.2| DNA-directed RNA polymerase II [Medicago truncatula]
          Length = 206

 Score =  261 bits (668), Expect = 3e-83
 Identities = 129/205 (62%), Positives = 157/205 (76%)
 Frame = -3

Query: 1046 ASEESMRLFRIRKNVMEMLKDRGYLVLDVELSMDYKQFKDKFGDSIRRDDLTINKAKKDN 867
            + EE  RL+RIRK VM+MLKDR YLV D EL+M    FKDK+G++++R+DL INK KKD 
Sbjct: 4    SEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTKKDK 63

Query: 866  PLDQIYVIFTNDERIGAKHIKVYLERMMQEKVFRTILVLQHKLTPFANRAIHDQEVTRRF 687
            P DQIYV F  + ++G K +K Y  RM  E V+R ILV Q  LTPFA   +   E+  +F
Sbjct: 64   PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCV--SEIASKF 121

Query: 686  HVEAFLEAELLVNINRHMLVPEHQVLSDEEKKALLEWYHLKDTQLPRIQLTDPVARYHGL 507
            H+E F EAELLVNI  H+LVPEHQ+L+D EKK LLE Y +K+TQLPRIQ+TDPVARY+GL
Sbjct: 122  HLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYGL 181

Query: 506  RRGQVVKIIRPSETAGRYITYRLVV 432
            +RGQVVKIIRPSETAGRY+TYR VV
Sbjct: 182  KRGQVVKIIRPSETAGRYVTYRFVV 206


>ref|XP_004511874.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
            [Cicer arietinum]
          Length = 206

 Score =  261 bits (668), Expect = 3e-83
 Identities = 129/203 (63%), Positives = 160/203 (78%)
 Frame = -3

Query: 1040 EESMRLFRIRKNVMEMLKDRGYLVLDVELSMDYKQFKDKFGDSIRRDDLTINKAKKDNPL 861
            EE  RL+RIRK VMEML+DR YLV D E++M   QFK+K+G++++R+DL INK KKD P 
Sbjct: 6    EEITRLYRIRKTVMEMLRDRNYLVGDFEINMSKHQFKEKYGENMKREDLVINKTKKDKPS 65

Query: 860  DQIYVIFTNDERIGAKHIKVYLERMMQEKVFRTILVLQHKLTPFANRAIHDQEVTRRFHV 681
            DQIYV F  + ++G K +K Y+ RM  E V+R ILV Q  LTPFA  ++   E++ +FH+
Sbjct: 66   DQIYVFFPEEVKVGVKTMKTYINRMNSENVYRAILVCQTSLTPFARTSV--AEISSKFHL 123

Query: 680  EAFLEAELLVNINRHMLVPEHQVLSDEEKKALLEWYHLKDTQLPRIQLTDPVARYHGLRR 501
            E F EAELLVNI  H+LVPEHQVL+D EKK LLE Y +K+TQLPRIQ+TDPVARY+GL+R
Sbjct: 124  EVFQEAELLVNIKDHVLVPEHQVLTDTEKKTLLERYTVKETQLPRIQVTDPVARYYGLKR 183

Query: 500  GQVVKIIRPSETAGRYITYRLVV 432
            GQVVKIIRPSETAGRY+TYR VV
Sbjct: 184  GQVVKIIRPSETAGRYVTYRFVV 206


>ref|XP_020101892.1| DNA-directed RNA polymerases II and IV subunit 5A-like [Ananas
            comosus]
          Length = 206

 Score =  261 bits (667), Expect = 5e-83
 Identities = 134/200 (67%), Positives = 160/200 (80%), Gaps = 1/200 (0%)
 Frame = -3

Query: 1028 RLFRIRKNVMEMLKDRGYLVLDVELSMDYKQFKDKFG-DSIRRDDLTINKAKKDNPLDQI 852
            RLFRIR+ VM+ML+DRGYLVLD E++M   +F  KFG D IRRDDL INK+KK++P DQI
Sbjct: 9    RLFRIRRTVMQMLRDRGYLVLDFEINMSKAEFLHKFGPDCIRRDDLLINKSKKNDPADQI 68

Query: 851  YVIFTNDERIGAKHIKVYLERMMQEKVFRTILVLQHKLTPFANRAIHDQEVTRRFHVEAF 672
            YV F NDE++G KHIK Y+E M  E V R +LVLQ  LTPFA   +  QE++ +F +E F
Sbjct: 69   YVFFPNDEKVGMKHIKKYVELMKAESVPRAMLVLQLNLTPFAKSYL--QEISPKFFLEVF 126

Query: 671  LEAELLVNINRHMLVPEHQVLSDEEKKALLEWYHLKDTQLPRIQLTDPVARYHGLRRGQV 492
             EAELLVNI  H LVPEHQVL+ +EKK LLE Y LK+TQLPRIQ+TDP+ARY+GL+RGQV
Sbjct: 127  QEAELLVNIKDHALVPEHQVLTSQEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQV 186

Query: 491  VKIIRPSETAGRYITYRLVV 432
            VKIIRPSETAGRY+TYR VV
Sbjct: 187  VKIIRPSETAGRYVTYRFVV 206


>ref|XP_020214903.1| DNA-directed RNA polymerases II and IV subunit 5A-like [Cajanus
            cajan]
 gb|KYP68466.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Cajanus
            cajan]
          Length = 206

 Score =  261 bits (667), Expect = 5e-83
 Identities = 131/203 (64%), Positives = 159/203 (78%)
 Frame = -3

Query: 1040 EESMRLFRIRKNVMEMLKDRGYLVLDVELSMDYKQFKDKFGDSIRRDDLTINKAKKDNPL 861
            EE  RL+RIRK VM+ML+DRGYLV D E++M    FK K+G++++R+DL INK+KKDN  
Sbjct: 6    EEIGRLYRIRKTVMQMLRDRGYLVGDFEINMSKHDFKSKYGENMKREDLVINKSKKDNSG 65

Query: 860  DQIYVIFTNDERIGAKHIKVYLERMMQEKVFRTILVLQHKLTPFANRAIHDQEVTRRFHV 681
            DQIYV F  + ++G K +K Y  RM  E V+R ILVLQ  LTPFA   I   E++ RFH+
Sbjct: 66   DQIYVFFPEEVKVGVKTMKTYTNRMNSENVYRAILVLQTNLTPFARTCI--SEISSRFHL 123

Query: 680  EAFLEAELLVNINRHMLVPEHQVLSDEEKKALLEWYHLKDTQLPRIQLTDPVARYHGLRR 501
            E F EAELLVNI  H+LVPEHQVL+D EKK LLE Y +K+TQLPRIQ+TDPVARY+GL+R
Sbjct: 124  EVFQEAELLVNIKEHVLVPEHQVLTDAEKKTLLERYTVKETQLPRIQVTDPVARYYGLKR 183

Query: 500  GQVVKIIRPSETAGRYITYRLVV 432
            GQVVKIIRPSETAGRY+TYR VV
Sbjct: 184  GQVVKIIRPSETAGRYVTYRFVV 206


>dbj|GAV91188.1| RNA_pol_Rpb5_C domain-containing protein/RNA_pol_Rpb5_N
            domain-containing protein [Cephalotus follicularis]
          Length = 206

 Score =  261 bits (666), Expect = 6e-83
 Identities = 128/205 (62%), Positives = 164/205 (80%)
 Frame = -3

Query: 1046 ASEESMRLFRIRKNVMEMLKDRGYLVLDVELSMDYKQFKDKFGDSIRRDDLTINKAKKDN 867
            + EE  RL+RIRK VM+MLKDR YLV D E+SM  +QF  KFG++++R+DL INK+K+++
Sbjct: 4    SEEEIRRLYRIRKTVMQMLKDRDYLVGDFEISMTREQFMQKFGENMKREDLLINKSKRND 63

Query: 866  PLDQIYVIFTNDERIGAKHIKVYLERMMQEKVFRTILVLQHKLTPFANRAIHDQEVTRRF 687
              DQI+V+F +++++G K +K Y  RM  E VFR ILV+QH LTPFA   I+  E+  +F
Sbjct: 64   SNDQIFVLFPDEQKVGVKTMKTYTNRMKAENVFRAILVVQHNLTPFARTCIN--EIASKF 121

Query: 686  HVEAFLEAELLVNINRHMLVPEHQVLSDEEKKALLEWYHLKDTQLPRIQLTDPVARYHGL 507
            H+E F EAELLVNI  H+LVPEHQVLS EEKK LLE Y +K+TQLPRIQ++DP+ARY+GL
Sbjct: 122  HLEVFQEAELLVNIKEHVLVPEHQVLSSEEKKTLLERYTVKETQLPRIQVSDPIARYYGL 181

Query: 506  RRGQVVKIIRPSETAGRYITYRLVV 432
            +RGQVVKIIRPSETAGRY+TYR VV
Sbjct: 182  KRGQVVKIIRPSETAGRYVTYRYVV 206


>gb|OVA00057.1| RNA polymerase [Macleaya cordata]
          Length = 205

 Score =  260 bits (665), Expect = 9e-83
 Identities = 128/207 (61%), Positives = 161/207 (77%)
 Frame = -3

Query: 1052 MAASEESMRLFRIRKNVMEMLKDRGYLVLDVELSMDYKQFKDKFGDSIRRDDLTINKAKK 873
            M++ EE  +LFRIRK VM+ML+DRGYLV D E++     F  KFGD+++RDDL INK+K+
Sbjct: 1    MSSDEEVTKLFRIRKTVMQMLRDRGYLVGDFEINETRAGFLSKFGDNVKRDDLVINKSKR 60

Query: 872  DNPLDQIYVIFTNDERIGAKHIKVYLERMMQEKVFRTILVLQHKLTPFANRAIHDQEVTR 693
            ++  DQIYV F  ++++G K +K Y  RM  E VFR ILV+Q  LTPFA   +   E++ 
Sbjct: 61   NDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCV--SEIST 118

Query: 692  RFHVEAFLEAELLVNINRHMLVPEHQVLSDEEKKALLEWYHLKDTQLPRIQLTDPVARYH 513
            +FH+E F EAELLVNI  H+LVPEHQVL+ EEKK LLE Y LK+TQLPRIQ+TDP+ARY+
Sbjct: 119  KFHLEVFQEAELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQITDPIARYY 178

Query: 512  GLRRGQVVKIIRPSETAGRYITYRLVV 432
            GL+RGQVVKIIRPSETAGRY+TYR VV
Sbjct: 179  GLKRGQVVKIIRPSETAGRYVTYRYVV 205