BLASTX nr result
ID: Ophiopogon23_contig00006777
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon23_contig00006777
(4228 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar... 303 e-130
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar... 303 e-130
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo... 299 e-122
gb|KYP53356.1| Retrovirus-related Pol polyprotein from transposo... 299 e-122
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 304 e-122
gb|PHT40240.1| Retrovirus-related Pol polyprotein from transposo... 305 e-122
gb|PRQ16639.1| putative RNA-directed DNA polymerase [Rosa chinen... 315 e-121
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 299 e-119
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711... 276 e-118
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 316 e-118
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 294 e-116
emb|CAN79684.1| hypothetical protein VITISV_003855 [Vitis vinifera] 282 e-115
gb|KYP31853.1| Retrovirus-related Pol polyprotein from transposo... 295 e-115
gb|KYP68590.1| Retrovirus-related Pol polyprotein from transposo... 275 e-114
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 279 e-114
gb|KYP40337.1| Retrovirus-related Pol polyprotein from transposo... 276 e-114
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 307 e-114
dbj|GAU37926.1| hypothetical protein TSUD_269410 [Trifolium subt... 280 e-114
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa] 307 e-114
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t... 263 e-113
>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
Length = 1841
Score = 303 bits (777), Expect(3) = e-130
Identities = 154/263 (58%), Positives = 202/263 (76%), Gaps = 3/263 (1%)
Frame = -1
Query: 4228 VVKHTSIRLLLVVVTQFDLELEQMDVKTTFLHGELEEKIYMKQSEGYIDVGNEQNVCLLK 4049
VVKH+SIR+LL +V + DLELEQ+DVKT FLHGELEE IYM+Q EG+ G E +VCLLK
Sbjct: 1410 VVKHSSIRVLLAMVAKSDLELEQLDVKTAFLHGELEETIYMRQPEGFTVPGKEDHVCLLK 1469
Query: 4048 NALYGLKQSPRQWYKRFDTFMEQANFIRCEYESCVYIKQ--EAEPTYLLLYVDDILIAAR 3875
+LYGLKQSPRQWYKRFD+FM Q + RC+Y++CVY ++ + YLLLYVDD+LIA++
Sbjct: 1470 KSLYGLKQSPRQWYKRFDSFMIQHGYTRCDYDACVYHRKLSDGSHIYLLLYVDDMLIASK 1529
Query: 3874 DMLHIREIKSLLPKEFDMKDLGAARKILGIEITRDRILGKLWLS*ENYILKVLKRFNMEE 3695
+M I ++KS L EF+MKDLGAA+KILG++I RDR GKL +S +NYI KVL+RF M++
Sbjct: 1530 NMSEINKLKSQLSGEFEMKDLGAAKKILGMDIHRDRKAGKLRVSQKNYIEKVLQRFGMDK 1589
Query: 3694 ARPVSAPMTGHFKLFSKQCPQS-PDKDEMSRVPYAYVVGSLMYAMACARSDLAYALSVVS 3518
A+ VS P+ HFKL ++ PQS +K +MS +PY+ VGS+MYAM C R D+++A+SVVS
Sbjct: 1590 AKTVSTPLAPHFKLSAELSPQSDEEKQQMSHIPYSSAVGSVMYAMVCTRPDISHAVSVVS 1649
Query: 3517 RFMSNF*KQH*EAVKWFLDTCEG 3449
R+MS K+H +AVKW L G
Sbjct: 1650 RYMSCPGKEHWQAVKWILRYLRG 1672
Score = 156 bits (395), Expect(3) = e-130
Identities = 78/124 (62%), Positives = 94/124 (75%)
Frame = -2
Query: 3312 GAISWKAELQETVALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSAIH 3133
GAISWKA LQ TVALSTTEAEY+A EA KEALW+KGLV G+ QD V CDSQSAIH
Sbjct: 1717 GAISWKAVLQSTVALSTTEAEYMALAEAVKEALWMKGLVSSLGLQQDFTVVFCDSQSAIH 1776
Query: 3132 LAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADMMTKAIPVEKFKSALD 2953
L K+Q +H+RTKHIDVRYH +R+ V + ++ + K+ T+KNPADM+TK IP KFK LD
Sbjct: 1777 LTKNQMFHERTKHIDVRYHFVREHVTQGDIV-ISKVATEKNPADMLTKVIPAYKFKHCLD 1835
Query: 2952 FIHV 2941
I +
Sbjct: 1836 LIGI 1839
Score = 59.3 bits (142), Expect(3) = e-130
Identities = 31/54 (57%), Positives = 39/54 (72%)
Frame = -3
Query: 3470 VLRYLRGIADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTVVKG 3309
+LRYLRG AD+ L++ + + + V GYVD+DYAGDLD RRS TGYVFT G
Sbjct: 1666 ILRYLRGSADLCLVYDQSDCTSSVT--GYVDSDYAGDLDKRRSLTGYVFTYSGG 1717
>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
Length = 2351
Score = 303 bits (777), Expect(3) = e-130
Identities = 154/263 (58%), Positives = 202/263 (76%), Gaps = 3/263 (1%)
Frame = -1
Query: 4228 VVKHTSIRLLLVVVTQFDLELEQMDVKTTFLHGELEEKIYMKQSEGYIDVGNEQNVCLLK 4049
VVKH+SIR+LL +V + DLELEQ+DVKT FLHGELEE IYM+Q EG+ G E +VCLLK
Sbjct: 1389 VVKHSSIRVLLAMVAKSDLELEQLDVKTAFLHGELEETIYMRQPEGFTVPGKEDHVCLLK 1448
Query: 4048 NALYGLKQSPRQWYKRFDTFMEQANFIRCEYESCVYIKQ--EAEPTYLLLYVDDILIAAR 3875
+LYGLKQSPRQWYKRFD+FM Q + RC+Y++CVY ++ + YLLLYVDD+LIA++
Sbjct: 1449 KSLYGLKQSPRQWYKRFDSFMIQHGYTRCDYDACVYHRKLSDGSHIYLLLYVDDMLIASK 1508
Query: 3874 DMLHIREIKSLLPKEFDMKDLGAARKILGIEITRDRILGKLWLS*ENYILKVLKRFNMEE 3695
+M I ++KS L EF+MKDLGAA+KILG++I RDR GKL +S +NYI KVL+RF M++
Sbjct: 1509 NMSEINKLKSQLSGEFEMKDLGAAKKILGMDIHRDRKAGKLRVSQKNYIEKVLQRFGMDK 1568
Query: 3694 ARPVSAPMTGHFKLFSKQCPQS-PDKDEMSRVPYAYVVGSLMYAMACARSDLAYALSVVS 3518
A+ VS P+ HFKL ++ PQS +K +MS +PY+ VGS+MYAM C R D+++A+SVVS
Sbjct: 1569 AKTVSTPLAPHFKLSAELSPQSDEEKQQMSHIPYSSAVGSVMYAMVCTRPDISHAVSVVS 1628
Query: 3517 RFMSNF*KQH*EAVKWFLDTCEG 3449
R+MS K+H +AVKW L G
Sbjct: 1629 RYMSCPGKEHWQAVKWILRYLRG 1651
Score = 156 bits (394), Expect(3) = e-130
Identities = 78/122 (63%), Positives = 93/122 (76%)
Frame = -2
Query: 3312 GAISWKAELQETVALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSAIH 3133
GAISWKA LQ TVALSTTEAEY+A EA KEALW+KGLV G+ QD V CDSQSAIH
Sbjct: 1696 GAISWKAVLQSTVALSTTEAEYMALAEAVKEALWMKGLVSSLGLQQDFTVVFCDSQSAIH 1755
Query: 3132 LAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADMMTKAIPVEKFKSALD 2953
L K+Q +H+RTKHIDVRYH +R+ V + ++ + K+ T+KNPADM+TK IP KFK LD
Sbjct: 1756 LTKNQMFHERTKHIDVRYHFVREHVTQGDIV-ISKVATEKNPADMLTKVIPAYKFKHCLD 1814
Query: 2952 FI 2947
I
Sbjct: 1815 LI 1816
Score = 59.3 bits (142), Expect(3) = e-130
Identities = 31/54 (57%), Positives = 39/54 (72%)
Frame = -3
Query: 3470 VLRYLRGIADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTVVKG 3309
+LRYLRG AD+ L++ + + + V GYVD+DYAGDLD RRS TGYVFT G
Sbjct: 1645 ILRYLRGSADLCLVYDQSDCTSSVT--GYVDSDYAGDLDKRRSLTGYVFTYSGG 1696
>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1032
Score = 299 bits (766), Expect(3) = e-122
Identities = 153/263 (58%), Positives = 193/263 (73%), Gaps = 3/263 (1%)
Frame = -1
Query: 4228 VVKHTSIRLLLVVVTQFDLELEQMDVKTTFLHGELEEKIYMKQSEGYIDVGNEQNVCLLK 4049
VV+HTSIR+LL V FDLELEQ+DVKT FLHGELEE+IYM Q EG++ E VC LK
Sbjct: 599 VVRHTSIRILLAFVALFDLELEQLDVKTAFLHGELEEEIYMDQPEGFVVPSKEHLVCQLK 658
Query: 4048 NALYGLKQSPRQWYKRFDTFMEQANFIRCEYESCVYIKQEAEPT--YLLLYVDDILIAAR 3875
+LYGLKQ+PRQWYK+FD+FM + R +Y+ C+Y +Q + T YLLLYVDD+LIA+R
Sbjct: 659 KSLYGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLYVDDMLIASR 718
Query: 3874 DMLHIREIKSLLPKEFDMKDLGAARKILGIEITRDRILGKLWLS*ENYILKVLKRFNMEE 3695
D I ++K+ L EF+MK+LGAA+KILG+EI RDR +GKL+LS + YI ++L RFNM
Sbjct: 719 DKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIERLLDRFNMNN 778
Query: 3694 ARPVSAPMTGHFKLFSKQCPQSPDK-DEMSRVPYAYVVGSLMYAMACARSDLAYALSVVS 3518
+PVS P+ HFKL S CPQ+ ++ + MS VPYA VGSLMYAM C R DLAYA+S+VS
Sbjct: 779 CKPVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLAYAVSMVS 838
Query: 3517 RFMSNF*KQH*EAVKWFLDTCEG 3449
R+M N K H AVKW +G
Sbjct: 839 RYMHNPGKDHWSAVKWIFRYLKG 861
Score = 139 bits (351), Expect(3) = e-122
Identities = 68/121 (56%), Positives = 88/121 (72%)
Frame = -2
Query: 3309 AISWKAELQETVALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSAIHL 3130
AISWKA LQ ALSTTEAEY++A E KEALW++GLVK G+ QD + V CDSQSAIHL
Sbjct: 908 AISWKASLQSIAALSTTEAEYVSATEGVKEALWIRGLVKELGLTQDVLTVFCDSQSAIHL 967
Query: 3129 AKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADMMTKAIPVEKFKSALDF 2950
K+ RYH +TKHIDV++H +R V +V+ + K+ T +NPADM+TK +P KF+ L
Sbjct: 968 TKNSRYHDKTKHIDVKHHFIRDIVTIGEVL-LQKVHTSENPADMLTKPLPNAKFQHCLGL 1026
Query: 2949 I 2947
+
Sbjct: 1027 V 1027
Score = 55.8 bits (133), Expect(3) = e-122
Identities = 24/51 (47%), Positives = 37/51 (72%)
Frame = -3
Query: 3470 VLRYLRGIADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 3318
+ RYL+G +++GL+F R + + G+VD+DY GDLD RRS +GY+FT+
Sbjct: 855 IFRYLKGTSNIGLVFDR-NKATTNNVAGFVDSDYGGDLDRRRSLSGYIFTL 904
>gb|KYP53356.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 503
Score = 299 bits (766), Expect(3) = e-122
Identities = 153/263 (58%), Positives = 193/263 (73%), Gaps = 3/263 (1%)
Frame = -1
Query: 4228 VVKHTSIRLLLVVVTQFDLELEQMDVKTTFLHGELEEKIYMKQSEGYIDVGNEQNVCLLK 4049
VV+HTSIR+LL V FDLELEQ+DVKT FLHGELEE+IYM Q EG++ E VC LK
Sbjct: 70 VVRHTSIRILLAFVALFDLELEQLDVKTAFLHGELEEEIYMDQPEGFVVPSKEHLVCQLK 129
Query: 4048 NALYGLKQSPRQWYKRFDTFMEQANFIRCEYESCVYIKQEAEPT--YLLLYVDDILIAAR 3875
+LYGLKQ+PRQWYK+FD+FM + R +Y+ C+Y +Q + T YLLLYVDD+LIA+R
Sbjct: 130 KSLYGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLYVDDMLIASR 189
Query: 3874 DMLHIREIKSLLPKEFDMKDLGAARKILGIEITRDRILGKLWLS*ENYILKVLKRFNMEE 3695
D I ++K+ L EF+MK+LGAA+KILG+EI RDR +GKL+LS + YI ++L RFNM
Sbjct: 190 DKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIERLLDRFNMNN 249
Query: 3694 ARPVSAPMTGHFKLFSKQCPQSPDK-DEMSRVPYAYVVGSLMYAMACARSDLAYALSVVS 3518
+PVS P+ HFKL S CPQ+ ++ + MS VPYA VGSLMYAM C R DLAYA+S+VS
Sbjct: 250 CKPVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLAYAVSMVS 309
Query: 3517 RFMSNF*KQH*EAVKWFLDTCEG 3449
R+M N K H AVKW +G
Sbjct: 310 RYMHNPGKDHWSAVKWIFRYLKG 332
Score = 139 bits (351), Expect(3) = e-122
Identities = 68/121 (56%), Positives = 88/121 (72%)
Frame = -2
Query: 3309 AISWKAELQETVALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSAIHL 3130
AISWKA LQ ALSTTEAEY++A E KEALW++GLVK G+ QD + V CDSQSAIHL
Sbjct: 379 AISWKASLQSIAALSTTEAEYVSATEGVKEALWIRGLVKELGLTQDVLTVFCDSQSAIHL 438
Query: 3129 AKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADMMTKAIPVEKFKSALDF 2950
K+ RYH +TKHIDV++H +R V +V+ + K+ T +NPADM+TK +P KF+ L
Sbjct: 439 TKNSRYHDKTKHIDVKHHFIRDIVTIGEVL-LQKVHTSENPADMLTKPLPNAKFQHCLGL 497
Query: 2949 I 2947
+
Sbjct: 498 V 498
Score = 55.8 bits (133), Expect(3) = e-122
Identities = 24/51 (47%), Positives = 37/51 (72%)
Frame = -3
Query: 3470 VLRYLRGIADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 3318
+ RYL+G +++GL+F R + + G+VD+DY GDLD RRS +GY+FT+
Sbjct: 326 IFRYLKGTSNIGLVFDR-NKATTNNVAGFVDSDYGGDLDRRRSLSGYIFTL 375
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gb|AAU89150.1| integrase core domain containing protein [Oryza sativa Japonica
Group]
gb|ABF98081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1322
Score = 304 bits (779), Expect(3) = e-122
Identities = 159/262 (60%), Positives = 194/262 (74%), Gaps = 2/262 (0%)
Frame = -1
Query: 4228 VVKHTSIRLLLVVVTQFDLELEQMDVKTTFLHGELEEKIYMKQSEGYIDVGNEQNVCLLK 4049
VVKH+SIR +VT DLELEQ+DVKTTFLHGELEE+IYM Q EG+I G E VC LK
Sbjct: 894 VVKHSSIRTFFSIVTMHDLELEQLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLK 953
Query: 4048 NALYGLKQSPRQWYKRFDTFMEQANFIRCEYESCVYIK-QEAEPTYLLLYVDDILIAARD 3872
+LYGLKQSPRQWYKRFD+FM F R E++SCVYIK P YLLLYVDD+LIAA+
Sbjct: 954 RSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFVNGSPIYLLLYVDDMLIAAKS 1013
Query: 3871 MLHIREIKSLLPKEFDMKDLGAARKILGIEITRDRILGKLWLS*ENYILKVLKRFNMEEA 3692
I +K L EFDMKDLGAA+KILG+EITRDR G L+LS ++YI KVL+RFNM +A
Sbjct: 1014 KEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNMHDA 1073
Query: 3691 RPVSAPMTGHFKLFSKQCPQS-PDKDEMSRVPYAYVVGSLMYAMACARSDLAYALSVVSR 3515
+PVS P+ HFKL + QC + D + MSRVPY+ VGSLMYAM C+ DL++A+S+VSR
Sbjct: 1074 KPVSTPIAPHFKLSALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSWPDLSHAMSLVSR 1133
Query: 3514 FMSNF*KQH*EAVKWFLDTCEG 3449
+M+N K+H +AV+W G
Sbjct: 1134 YMANPGKEHWKAVQWIFRYLRG 1155
Score = 127 bits (320), Expect(3) = e-122
Identities = 65/127 (51%), Positives = 84/127 (66%)
Frame = -2
Query: 3318 GEGAISWKAELQETVALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSA 3139
G A+SWKA LQ VA STTEAEY+A EA KE++WLKGL + + + CDSQSA
Sbjct: 1196 GSCAVSWKATLQPVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVDSCINLFCDSQSA 1255
Query: 3138 IHLAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADMMTKAIPVEKFKSA 2959
I L KDQ +H+RTKHID++YH +R V + K + + KI NPADMMTK IPV KF+
Sbjct: 1256 ICLTKDQMFHERTKHIDIKYHYVRDIVAQGK-LKVCKISIHDNPADMMTKPIPVAKFELC 1314
Query: 2958 LDFIHVL 2938
+ ++
Sbjct: 1315 SSLVGIV 1321
Score = 60.5 bits (145), Expect(3) = e-122
Identities = 30/51 (58%), Positives = 37/51 (72%)
Frame = -3
Query: 3470 VLRYLRGIADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 3318
+ RYLRG AD L F R+++G L GYVD+D+A DLD RRS TGYVFT+
Sbjct: 1149 IFRYLRGTADACLKFGRIDKG----LVGYVDSDFAADLDKRRSLTGYVFTI 1195
>gb|PHT40240.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Capsicum
baccatum]
Length = 1526
Score = 305 bits (780), Expect(3) = e-122
Identities = 154/263 (58%), Positives = 195/263 (74%), Gaps = 3/263 (1%)
Frame = -1
Query: 4228 VVKHTSIRLLLVVVTQFDLELEQMDVKTTFLHGELEEKIYMKQSEGYIDVGNEQNVCLLK 4049
VV+H+SIR+LL +V +DLELEQ+DVKT FLHG LEE+IY++Q EG++ G E +VC LK
Sbjct: 559 VVRHSSIRVLLALVALYDLELEQLDVKTAFLHGNLEEEIYIQQPEGFVVPGKENHVCRLK 618
Query: 4048 NALYGLKQSPRQWYKRFDTFMEQANFIRCEYESCVYIKQ--EAEPTYLLLYVDDILIAAR 3875
+LYGLKQSPRQWYKRFD+FM + R Y++CVY ++ + YLLLYVDD+LIAAR
Sbjct: 619 KSLYGLKQSPRQWYKRFDSFMTGHGYSRSSYDNCVYFQKLSDGSLVYLLLYVDDMLIAAR 678
Query: 3874 DMLHIREIKSLLPKEFDMKDLGAARKILGIEITRDRILGKLWLS*ENYILKVLKRFNMEE 3695
D + ++K L EFDMKDLG A+KILG+EI RDR GKL+LS + Y++K+L RF M +
Sbjct: 679 DKTLVDKLKVQLNSEFDMKDLGPAKKILGMEINRDRQAGKLFLSQKKYVMKMLDRFGMRD 738
Query: 3694 ARPVSAPMTGHFKLFSKQCPQSPDKD-EMSRVPYAYVVGSLMYAMACARSDLAYALSVVS 3518
+ V+ P+ HFKL S QCPQS ++ MS VPY+ VGSLMYAM C R DLAYA+SVVS
Sbjct: 739 CKAVNTPLAAHFKLSSDQCPQSEEEQRRMSHVPYSNAVGSLMYAMVCTRPDLAYAVSVVS 798
Query: 3517 RFMSNF*KQH*EAVKWFLDTCEG 3449
RFM N KQH E+VKW L +G
Sbjct: 799 RFMHNPGKQHWESVKWILRYLKG 821
Score = 128 bits (322), Expect(3) = e-122
Identities = 64/124 (51%), Positives = 86/124 (69%)
Frame = -2
Query: 3309 AISWKAELQETVALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSAIHL 3130
AISW + LQ ALSTTEAEYIAA E KEA+WL+GLV G+ Q + + CDSQ+A+HL
Sbjct: 868 AISWYSSLQAIAALSTTEAEYIAATEGVKEAIWLRGLVAELGLQQHILVMFCDSQTAVHL 927
Query: 3129 AKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADMMTKAIPVEKFKSALDF 2950
A+++++H +TKHID++ H +R VD + I + KI T +NPADM+TK +P KF LD
Sbjct: 928 ARNRKHHSKTKHIDIKCHFIRDIVDAGE-ITVEKIHTTENPADMLTKPLPAAKFDHCLDL 986
Query: 2949 IHVL 2938
L
Sbjct: 987 ADYL 990
Score = 58.5 bits (140), Expect(3) = e-122
Identities = 30/53 (56%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Frame = -3
Query: 3470 VLRYLRGIADVGLLF--QRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 3318
+LRYL+G D+GL+F QR + G V GYVDADY GDLD RRS + Y+FT+
Sbjct: 815 ILRYLKGSPDIGLVFDRQRSDPGGVV---GYVDADYGGDLDRRRSLSAYIFTL 864
>gb|PRQ16639.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 502
Score = 315 bits (807), Expect(2) = e-121
Identities = 163/271 (60%), Positives = 197/271 (72%), Gaps = 3/271 (1%)
Frame = -1
Query: 4228 VVKHTSIRLLLVVVTQFDLELEQMDVKTTFLHGELEEKIYMKQSEGYIDVGNEQNVCLLK 4049
VVKHTSIRLLL + Q+D+E+EQMDVKT FLHG+LEE IYM Q EG+++ G E VC L+
Sbjct: 70 VVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKEDLVCRLR 129
Query: 4048 NALYGLKQSPRQWYKRFDTFMEQANFIRCEYESCVY--IKQEAEPTYLLLYVDDILIAAR 3875
+LYGLKQSPRQWYKRFDT+M + + RC Y+ CVY + ++ E LLLYVDD+LIA +
Sbjct: 130 KSLYGLKQSPRQWYKRFDTYMLKIGYTRCLYDCCVYYHVFEDGEIILLLLYVDDMLIACK 189
Query: 3874 DMLHIREIKSLLPKEFDMKDLGAARKILGIEITRDRILGKLWLS*ENYILKVLKRFNMEE 3695
DM I E+K L EFDMKDLGAA+ ILGIEI RDR GK+WLS E YIL+VL+RFNM+
Sbjct: 190 DMSKIEELKKKLGAEFDMKDLGAAQNILGIEIRRDRKAGKIWLSQEKYILRVLERFNMDG 249
Query: 3694 ARPVSAPMTGHFKLFSKQCPQSPDK-DEMSRVPYAYVVGSLMYAMACARSDLAYALSVVS 3518
A+ VS P+ H++L +KQ P S + D M VPYA VG LMYAM C R DLA ALSVVS
Sbjct: 250 AKVVSIPLAAHYQLSAKQRPSSQKEIDAMKDVPYASAVGCLMYAMICTRPDLAQALSVVS 309
Query: 3517 RFMSNF*KQH*EAVKWFLDTCEGLRMLVCSF 3425
++MSN K H EAVKW L +G R L F
Sbjct: 310 KYMSNPGKPHWEAVKWILRYLKGTRQLGIMF 340
Score = 151 bits (382), Expect(2) = e-121
Identities = 75/132 (56%), Positives = 92/132 (69%)
Frame = -2
Query: 3336 GLCLHSGEGAISWKAELQETVALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVH 3157
G G G +SWK+ LQ ALSTTEAEY+A EASKEA+WL GL FGI Q+ V V
Sbjct: 369 GYVFTCGGGPVSWKSTLQAVTALSTTEAEYMALTEASKEAIWLNGLASEFGIHQEGVVVK 428
Query: 3156 CDSQSAIHLAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADMMTKAIPV 2977
CDSQSAIHLAK+Q +H RTKHIDVRYH++R WV+ +I + K+ T N AD +TK + V
Sbjct: 429 CDSQSAIHLAKNQVFHARTKHIDVRYHRIRDWVESGNII-VEKVHTNDNAADCLTKPVAV 487
Query: 2976 EKFKSALDFIHV 2941
EKFK L+ + V
Sbjct: 488 EKFKHCLNLLSV 499
Score = 63.2 bits (152), Expect = 3e-06
Identities = 31/50 (62%), Positives = 39/50 (78%)
Frame = -3
Query: 3470 VLRYLRGIADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFT 3321
+LRYL+G +G++F+R +E V G+VDADYAGDLD RRSTTGYVFT
Sbjct: 326 ILRYLKGTRQLGIMFERKQEVACVA--GFVDADYAGDLDKRRSTTGYVFT 373
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 299 bits (766), Expect(3) = e-119
Identities = 158/262 (60%), Positives = 193/262 (73%), Gaps = 2/262 (0%)
Frame = -1
Query: 4228 VVKHTSIRLLLVVVTQFDLELEQMDVKTTFLHGELEEKIYMKQSEGYIDVGNEQNVCLLK 4049
VVKH+SIR LL +V D ELEQMDVKT FLHGELEE IYM+Q EG++ G E VC LK
Sbjct: 813 VVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLK 872
Query: 4048 NALYGLKQSPRQWYKRFDTFMEQANFIRCEYESCVYIK-QEAEPTYLLLYVDDILIAARD 3872
+LYGLKQSPRQWYKRFD+FM F R Y+SCVY+K + YLLLYVDD+LIAA+D
Sbjct: 873 KSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVDGSAIYLLLYVDDMLIAAKD 932
Query: 3871 MLHIREIKSLLPKEFDMKDLGAARKILGIEITRDRILGKLWLS*ENYILKVLKRFNMEEA 3692
I ++K+ L EF+MKDLGAA+KILG+EITR+R GKL+LS + YI KVL RFNM +A
Sbjct: 933 KSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKCYIEKVLHRFNMHDA 992
Query: 3691 RPVSAPMTGHFKLFSKQCPQSP-DKDEMSRVPYAYVVGSLMYAMACARSDLAYALSVVSR 3515
+ VS + HF+L S CPQS D + MSRVPY+ V SLMYAM C+R DL++ALSVVSR
Sbjct: 993 KLVSTLLAAHFRLSSDLCPQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHALSVVSR 1052
Query: 3514 FMSNF*KQH*EAVKWFLDTCEG 3449
+M+N K+H +AV+W G
Sbjct: 1053 YMANPGKEHWKAVQWIFRYLRG 1074
Score = 126 bits (316), Expect(3) = e-119
Identities = 65/126 (51%), Positives = 82/126 (65%)
Frame = -2
Query: 3318 GEGAISWKAELQETVALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSA 3139
G A+SWKA LQ TVALSTTEAEY+A EA KE +WL+GL + + + CDSQSA
Sbjct: 1115 GGCAVSWKASLQATVALSTTEAEYMAISEACKEVIWLRGLYTELCGVTSCINIFCDSQSA 1174
Query: 3138 IHLAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADMMTKAIPVEKFKSA 2959
I L KDQ +H+RTKHID+RYH +R V + + + KI T NP DMMTK +P KF+
Sbjct: 1175 ICLTKDQMFHERTKHIDLRYHFIR-GVIAEGDVKVCKISTHDNPVDMMTKPVPATKFELC 1233
Query: 2958 LDFIHV 2941
+ V
Sbjct: 1234 SSLVGV 1239
Score = 57.8 bits (138), Expect(3) = e-119
Identities = 30/51 (58%), Positives = 35/51 (68%)
Frame = -3
Query: 3470 VLRYLRGIADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 3318
+ RYLRG + L F R +G L GYVD+D+AGDLD RRS TGYVFTV
Sbjct: 1068 IFRYLRGTSSACLQFGRSSDG----LVGYVDSDFAGDLDRRRSLTGYVFTV 1114
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 276 bits (707), Expect(3) = e-118
Identities = 145/255 (56%), Positives = 185/255 (72%), Gaps = 3/255 (1%)
Frame = -1
Query: 4228 VVKHTSIRLLLVVVTQFDLELEQMDVKTTFLHGELEEKIYMKQSEGYIDVGNEQNVCLLK 4049
VV+HTSIR+LL +V +LELEQ+DVKT FLHGELEE+IYM Q +G+ G E +VC LK
Sbjct: 879 VVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLK 938
Query: 4048 NALYGLKQSPRQWYKRFDTFMEQANFIRCEYESCVYIKQEAEPT--YLLLYVDDILIAAR 3875
+LYGLKQSPRQWYKRFD++M + + R Y+ CVY + + + YL+LYVDD+LIAA+
Sbjct: 939 KSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAK 998
Query: 3874 DMLHIREIKSLLPKEFDMKDLGAARKILGIEITRDRILGKLWLS*ENYILKVLKRFNMEE 3695
I+++K LL EF+MKDLGAARKILG+EI RDR KL+LS +YI KVL RF M
Sbjct: 999 KKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSS 1058
Query: 3694 ARPVSAPMTGHFKLFSKQCPQS-PDKDEMSRVPYAYVVGSLMYAMACARSDLAYALSVVS 3518
++P+ P + L + PQS +K+ MSRVPYA VGSLMYAM C R DLA+A+SVVS
Sbjct: 1059 SKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVS 1118
Query: 3517 RFMSNF*KQH*EAVK 3473
RFM ++H +AVK
Sbjct: 1119 RFMGQPGREHWQAVK 1133
Score = 144 bits (362), Expect(3) = e-118
Identities = 72/126 (57%), Positives = 88/126 (69%)
Frame = -2
Query: 3318 GEGAISWKAELQETVALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSA 3139
G +SWKA LQ TV LSTTEAEY+A EA+KE +WLKGLV G+ D V+CDS SA
Sbjct: 1183 GGSVVSWKATLQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLHHDQATVYCDSLSA 1242
Query: 3138 IHLAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADMMTKAIPVEKFKSA 2959
I LAKDQ +H+RTKHIDVRYH LR +K I + K+GT NPADM TK +P KF+
Sbjct: 1243 ICLAKDQVHHERTKHIDVRYHFLRS----EKRIKVKKVGTADNPADMFTKPVPQSKFQHC 1298
Query: 2958 LDFIHV 2941
LD +++
Sbjct: 1299 LDLLNI 1304
Score = 57.8 bits (138), Expect(3) = e-118
Identities = 28/51 (54%), Positives = 36/51 (70%)
Frame = -3
Query: 3470 VLRYLRGIADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 3318
+ RYLRG +DVGL++ Q + GY D+DYAGD+D RRS TGYVFT+
Sbjct: 1135 IFRYLRGTSDVGLIYGG---DTQCLVTGYSDSDYAGDVDTRRSMTGYVFTL 1182
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 316 bits (809), Expect(2) = e-118
Identities = 160/271 (59%), Positives = 198/271 (73%), Gaps = 3/271 (1%)
Frame = -1
Query: 4228 VVKHTSIRLLLVVVTQFDLELEQMDVKTTFLHGELEEKIYMKQSEGYIDVGNEQNVCLLK 4049
VVKHTSIRLLL + Q+D+E+EQMDVKT FLHG+LEE IYM Q EG+++ G E VC LK
Sbjct: 870 VVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKENLVCRLK 929
Query: 4048 NALYGLKQSPRQWYKRFDTFMEQANFIRCEYESCVY--IKQEAEPTYLLLYVDDILIAAR 3875
+LYGLKQSPRQWYK FDT+M + + RC+Y+ CVY + ++ + LLLYVDD+LIA R
Sbjct: 930 KSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYDCCVYYHVFEDGKVILLLLYVDDMLIACR 989
Query: 3874 DMLHIREIKSLLPKEFDMKDLGAARKILGIEITRDRILGKLWLS*ENYILKVLKRFNMEE 3695
DML I+++K L EFDMKDLGAA+KILGIEI RDR GK+WLS E YI+K+L+RFNM E
Sbjct: 990 DMLQIQKLKKKLGAEFDMKDLGAAQKILGIEIRRDRNAGKIWLSQEKYIMKILERFNMAE 1049
Query: 3694 ARPVSAPMTGHFKLFSKQCPQSPDK-DEMSRVPYAYVVGSLMYAMACARSDLAYALSVVS 3518
A+ VS P+ HF+L ++Q P + D M VPYA VG LMYAM C R DLA A+SVVS
Sbjct: 1050 AKVVSIPLAAHFRLSAEQRPSDQKEIDMMKNVPYASAVGCLMYAMICTRPDLAQAMSVVS 1109
Query: 3517 RFMSNF*KQH*EAVKWFLDTCEGLRMLVCSF 3425
++MSN K+H EAVKW + R L F
Sbjct: 1110 KYMSNPGKRHWEAVKWIFKYLKNTRQLGIMF 1140
Score = 140 bits (353), Expect(2) = e-118
Identities = 70/123 (56%), Positives = 85/123 (69%)
Frame = -2
Query: 3336 GLCLHSGEGAISWKAELQETVALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVH 3157
G G G +SWKA LQ ALSTTEAEY+A EASKEA+WL GL G+ Q+ V V
Sbjct: 1169 GYVFTCGGGPVSWKATLQAVTALSTTEAEYMALTEASKEAIWLNGLAGQLGVHQEGVVVK 1228
Query: 3156 CDSQSAIHLAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADMMTKAIPV 2977
CDSQSAIHLAK+Q +H RTKHID RYH++R WV+ VI + K+ T N AD +TK + V
Sbjct: 1229 CDSQSAIHLAKNQVFHARTKHIDARYHRIRDWVEAG-VIIVEKVHTDDNAADFLTKPVSV 1287
Query: 2976 EKF 2968
EK+
Sbjct: 1288 EKY 1290
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gb|AAT44170.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1175
Score = 294 bits (753), Expect(3) = e-116
Identities = 153/254 (60%), Positives = 189/254 (74%), Gaps = 2/254 (0%)
Frame = -1
Query: 4225 VKHTSIRLLLVVVTQFDLELEQMDVKTTFLHGELEEKIYMKQSEGYIDVGNEQNVCLLKN 4046
VKH+SIR +V DLELEQ+DVKT FLHGELEE+IYM Q EG+I G E VC LK
Sbjct: 748 VKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKR 807
Query: 4045 ALYGLKQSPRQWYKRFDTFMEQANFIRCEYESCVYIK-QEAEPTYLLLYVDDILIAARDM 3869
+LYGLKQSPRQWYKRFD+FM F R E++SCVYIK P YLLLYVDD+LIAA+
Sbjct: 808 SLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFVNVSPIYLLLYVDDMLIAAKSK 867
Query: 3868 LHIREIKSLLPKEFDMKDLGAARKILGIEITRDRILGKLWLS*ENYILKVLKRFNMEEAR 3689
I +K L EFDMKDL AA+KILG+EITRDR G L+LS ++YI KVL+RFNM + +
Sbjct: 868 EQITTLKKQLSSEFDMKDLDAAKKILGMEITRDRNSGWLFLSQQSYIKKVLQRFNMHDTK 927
Query: 3688 PVSAPMTGHFKLFSKQCPQS-PDKDEMSRVPYAYVVGSLMYAMACARSDLAYALSVVSRF 3512
PVS + HFKL + QC + D + MSRVPY+ VVGSLMYAM C+R DL++A+S+VSR+
Sbjct: 928 PVSTHIAPHFKLSALQCASTDEDVEYMSRVPYSSVVGSLMYAMVCSRLDLSHAMSLVSRY 987
Query: 3511 MSNF*KQH*EAVKW 3470
M+N K+H +A++W
Sbjct: 988 MANPGKEHWKAIQW 1001
Score = 126 bits (316), Expect(3) = e-116
Identities = 63/127 (49%), Positives = 84/127 (66%)
Frame = -2
Query: 3318 GEGAISWKAELQETVALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSA 3139
G A+SWKA L+ VA STTEAEY+A EA KE++WLKGL + + + CDSQSA
Sbjct: 1049 GSCAVSWKATLRHVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVYSCINLFCDSQSA 1108
Query: 3138 IHLAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADMMTKAIPVEKFKSA 2959
I L KDQ +H+RTKHID++YH +R V + K + + KI T NP DMMTK +PV KF+
Sbjct: 1109 ICLTKDQMFHERTKHIDIKYHYVRDVVAQGK-LKVCKISTHDNPVDMMTKHVPVAKFELC 1167
Query: 2958 LDFIHVL 2938
+ ++
Sbjct: 1168 SSLVGIV 1174
Score = 53.5 bits (127), Expect(3) = e-116
Identities = 28/51 (54%), Positives = 34/51 (66%)
Frame = -3
Query: 3470 VLRYLRGIADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 3318
+ RYLR A+ L F R +G L GYVD+D+A DLD RRS TGYVFT+
Sbjct: 1002 IFRYLRDTANACLKFGRTNKG----LIGYVDSDFAADLDKRRSLTGYVFTI 1048
>emb|CAN79684.1| hypothetical protein VITISV_003855 [Vitis vinifera]
Length = 406
Score = 282 bits (721), Expect(3) = e-115
Identities = 136/241 (56%), Positives = 182/241 (75%), Gaps = 4/241 (1%)
Frame = -1
Query: 4159 MDVKTTFLHGELEEKIYMKQSEGYIDVGNEQNVCLLKNALYGLKQSPRQWYKRFDTFMEQ 3980
MDVKTTFLHG+LEE +YM Q EG+I +G E V LK +LYGLKQSPRQWYKRFD++M +
Sbjct: 1 MDVKTTFLHGDLEELVYMVQLEGFIQLGQEHLVYKLKKSLYGLKQSPRQWYKRFDSYMIK 60
Query: 3979 ANFIRCEYESCVYIKQ---EAEPTYLLLYVDDILIAARDMLHIREIKSLLPKEFDMKDLG 3809
++ RCEY+ CVY+K ++ +LLLYVDD+LI + M+ + ++KSLL KEFDMKDLG
Sbjct: 61 TSYKRCEYDCCVYVKSLDDDSSFIFLLLYVDDMLIVVKSMVEVNKLKSLLSKEFDMKDLG 120
Query: 3808 AARKILGIEITRDRILGKLWLS*ENYILKVLKRFNMEEARPVSAPMTGHFKLFSKQCPQS 3629
+KI+GIEI RDR LG+LWLS NY+ ++L+RFNM+ A+PVS P+ HF+L + QCP++
Sbjct: 121 VTKKIIGIEIHRDRALGRLWLSQHNYVKRMLERFNMDNAKPVSTPLANHFRLSTSQCPKT 180
Query: 3628 P-DKDEMSRVPYAYVVGSLMYAMACARSDLAYALSVVSRFMSNF*KQH*EAVKWFLDTCE 3452
+ ++MS+VPYA VG LMYAM C R DLA+A+SVVS+F+SN + + +AVKW
Sbjct: 181 DGEVNDMSKVPYASAVGCLMYAMVCTRLDLAHAVSVVSKFLSNPGRMNWDAVKWIFRYLR 240
Query: 3451 G 3449
G
Sbjct: 241 G 241
Score = 127 bits (318), Expect(3) = e-115
Identities = 63/121 (52%), Positives = 86/121 (71%)
Frame = -2
Query: 3318 GEGAISWKAELQETVALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSA 3139
G G I WK+ +Q VAL TT++EY+A E +KE+LWL GLVK GI Q VQ++ D+QSA
Sbjct: 284 GGGPICWKSMIQSLVALYTTKSEYMAIAETTKESLWLTGLVKELGIQQGGVQLYFDNQSA 343
Query: 3138 IHLAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADMMTKAIPVEKFKSA 2959
I+L K+Q YH RTKHIDVR+HK+ + V +++ + K+ T +N ADM+TK + EKFK
Sbjct: 344 IYLEKNQVYHARTKHIDVRFHKISELVSSGELL-LKKVHTSENAADMLTKPVTTEKFKHC 402
Query: 2958 L 2956
L
Sbjct: 403 L 403
Score = 62.0 bits (149), Expect(3) = e-115
Identities = 31/54 (57%), Positives = 37/54 (68%)
Frame = -3
Query: 3470 VLRYLRGIADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTVVKG 3309
+ RYLRG D G+ F + + V+ GYVDADYAGDLD RRST GYVFT+ G
Sbjct: 235 IFRYLRGTTDYGITFSKQQSDPSVK--GYVDADYAGDLDERRSTIGYVFTLGGG 286
>gb|KYP31853.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1314
Score = 295 bits (755), Expect(3) = e-115
Identities = 147/262 (56%), Positives = 187/262 (71%), Gaps = 2/262 (0%)
Frame = -1
Query: 4228 VVKHTSIRLLLVVVTQFDLELEQMDVKTTFLHGELEEKIYMKQSEGYIDVGNEQNVCLLK 4049
VVK TSIR +L + + DLE+EQ+DVKT FLHG+LEE+IYM+Q EG+ + G E VC LK
Sbjct: 883 VVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFAEPGKEHLVCRLK 942
Query: 4048 NALYGLKQSPRQWYKRFDTFMEQANFIRCEYESCVYIK--QEAEPTYLLLYVDDILIAAR 3875
+LYGLKQ+PRQWYK+FD FM Q NF + + CV++K + E LLLYVDD+LI +
Sbjct: 943 KSLYGLKQAPRQWYKKFDLFMAQHNFKKTSADQCVFVKNYENGESIILLLYVDDMLIVGK 1002
Query: 3874 DMLHIREIKSLLPKEFDMKDLGAARKILGIEITRDRILGKLWLS*ENYILKVLKRFNMEE 3695
D I +K L K F MKDLG+ +KILG++I RDR LW+S E+YI KVL+RFNM
Sbjct: 1003 DKTKIAALKKALSKSFAMKDLGSVKKILGMKIIRDRSKRMLWMSQEDYIKKVLERFNMHN 1062
Query: 3694 ARPVSAPMTGHFKLFSKQCPQSPDKDEMSRVPYAYVVGSLMYAMACARSDLAYALSVVSR 3515
A+ V P+ GH KL KQCP + +K+EMS+VPY+ VGSLMYAM C R D+AYA+ VVSR
Sbjct: 1063 AKSVHVPLPGHLKLSKKQCPVNEEKEEMSKVPYSSAVGSLMYAMVCTRPDIAYAVGVVSR 1122
Query: 3514 FMSNF*KQH*EAVKWFLDTCEG 3449
F+SN K+H AVKW L +G
Sbjct: 1123 FLSNPGKEHWNAVKWILRYLKG 1144
Score = 127 bits (318), Expect(3) = e-115
Identities = 63/116 (54%), Positives = 85/116 (73%)
Frame = -2
Query: 3312 GAISWKAELQETVALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSAIH 3133
GAISW++ LQ+ +ALSTTEAE+IA E KE LW+K ++ G Q+S ++CDSQSAIH
Sbjct: 1187 GAISWQSRLQKCIALSTTEAEFIAITEGCKEILWMKKFLQELGQDQESYVLYCDSQSAIH 1246
Query: 3132 LAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADMMTKAIPVEKFK 2965
L+K+ +H R+KHIDVRYH +R V K++ + KI TK N ADMMTK++P EK +
Sbjct: 1247 LSKNSTFHSRSKHIDVRYHWIRD-VLESKMLKIEKIHTKDNGADMMTKSLPREKIE 1301
Score = 47.4 bits (111), Expect(3) = e-115
Identities = 27/54 (50%), Positives = 34/54 (62%)
Frame = -3
Query: 3470 VLRYLRGIADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTVVKG 3309
+LRYL+G A L F GN + L GY DAD AGD+D R+ST+GY+ T G
Sbjct: 1138 ILRYLKGTAKSCLCFGN---GN-LMLTGYSDADMAGDVDSRKSTSGYLITFAGG 1187
>gb|KYP68590.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 523
Score = 275 bits (702), Expect(3) = e-114
Identities = 142/262 (54%), Positives = 184/262 (70%), Gaps = 2/262 (0%)
Frame = -1
Query: 4228 VVKHTSIRLLLVVVTQFDLELEQMDVKTTFLHGELEEKIYMKQSEGYIDVGNEQNVCLLK 4049
VVK +IR +L +V +L LEQ+DVKT FLHG+L+E+IYM Q EG+ + G E VC LK
Sbjct: 95 VVKLNTIRTVLSIVASEELYLEQLDVKTAFLHGDLDEEIYMHQPEGFSEKGKENMVCRLK 154
Query: 4048 NALYGLKQSPRQWYKRFDTFMEQANFIRCEYESCVYIKQ-EAEPTYLLLYVDDILIAARD 3872
+LYGLKQ+PRQWYK+FD FM + F +C + C Y K+ ++ LLLYVDD+L+A D
Sbjct: 155 KSLYGLKQAPRQWYKKFDGFMHKEGFHKCNADHCCYFKRYKSSYIILLLYVDDMLVAGLD 214
Query: 3871 MLHIREIKSLLPKEFDMKDLGAARKILGIEITRDRILGKLWLS*ENYILKVLKRFNMEEA 3692
M IR +K L +EFDMKDLG A+KILG++ITRD+ G L LS YI +VL+RFNM +A
Sbjct: 215 MDEIRSLKQRLSREFDMKDLGPAKKILGMQITRDKQRGILQLSQAEYINRVLQRFNMGDA 274
Query: 3691 RPVSAPMTGHFKLFSKQCPQSPDKDE-MSRVPYAYVVGSLMYAMACARSDLAYALSVVSR 3515
+PVS P+ HF+L Q PQ+ ++ M++VPYA +GSLMYAM C R D+ +A+ VVSR
Sbjct: 275 KPVSTPLASHFRLSKDQSPQTEEERYFMAKVPYASAIGSLMYAMVCTRPDIGHAVGVVSR 334
Query: 3514 FMSNF*KQH*EAVKWFLDTCEG 3449
FMSN K H EAVKW L G
Sbjct: 335 FMSNPGKAHWEAVKWILRYLRG 356
Score = 135 bits (339), Expect(3) = e-114
Identities = 63/118 (53%), Positives = 88/118 (74%)
Frame = -2
Query: 3318 GEGAISWKAELQETVALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSA 3139
G A+SW +++Q+ VALSTTEAEY+A EASKE +WL+GL+ G IQ+ +H DSQSA
Sbjct: 397 GTTAVSWMSQVQKIVALSTTEAEYVAVTEASKELIWLQGLLTELGFIQEKSVLHSDSQSA 456
Query: 3138 IHLAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADMMTKAIPVEKFK 2965
IHLAK+ +H RTKHID+RYH +R ++ D+V+ + KI +NPADM+TK + ++K K
Sbjct: 457 IHLAKNSAFHSRTKHIDIRYHFIRSLLE-DEVLTLKKILGSRNPADMLTKVVTIDKLK 513
Score = 58.2 bits (139), Expect(3) = e-114
Identities = 28/51 (54%), Positives = 38/51 (74%)
Frame = -3
Query: 3470 VLRYLRGIADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 3318
+LRYLRG + L F + ++++QGYVDADY G++D RRSTTGY+FTV
Sbjct: 350 ILRYLRGTTERCLHFGK----GKIKVQGYVDADYGGEVDHRRSTTGYIFTV 396
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease
emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
Length = 1328
Score = 279 bits (713), Expect(3) = e-114
Identities = 141/263 (53%), Positives = 186/263 (70%), Gaps = 3/263 (1%)
Frame = -1
Query: 4228 VVKHTSIRLLLVVVTQFDLELEQMDVKTTFLHGELEEKIYMKQSEGYIDVGNEQNVCLLK 4049
VVK TSIR +L + DLE+EQ+DVKT FLHG+LEE+IYM+Q EG+ G + VC L
Sbjct: 898 VVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLN 957
Query: 4048 NALYGLKQSPRQWYKRFDTFMEQANFIRCEYESCVYIKQEAEPTY--LLLYVDDILIAAR 3875
+LYGLKQ+PRQWY +FD+FM+ +++ + CVY K+ +E + LLLYVDD+LI +
Sbjct: 958 KSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGK 1017
Query: 3874 DMLHIREIKSLLPKEFDMKDLGAARKILGIEITRDRILGKLWLS*ENYILKVLKRFNMEE 3695
D I ++K L K FDMKDLG A++ILG++I R+R KLWLS E YI +VL+RFNM+
Sbjct: 1018 DKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKN 1077
Query: 3694 ARPVSAPMTGHFKLFSKQCPQS-PDKDEMSRVPYAYVVGSLMYAMACARSDLAYALSVVS 3518
A+PVS P+ GH KL K CP + +K M++VPY+ VGSLMYAM C R D+A+A+ VVS
Sbjct: 1078 AKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVS 1137
Query: 3517 RFMSNF*KQH*EAVKWFLDTCEG 3449
RF+ N K+H EAVKW L G
Sbjct: 1138 RFLENPGKEHWEAVKWILRYLRG 1160
Score = 139 bits (349), Expect(3) = e-114
Identities = 67/122 (54%), Positives = 90/122 (73%)
Frame = -2
Query: 3312 GAISWKAELQETVALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSAIH 3133
GAISW+++LQ+ VALSTTEAEYIAA E KE +WLK ++ G+ Q V+CDSQSAI
Sbjct: 1203 GAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAID 1262
Query: 3132 LAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADMMTKAIPVEKFKSALD 2953
L+K+ YH RTKHIDVRYH +R+ VD D+ + ++KI T +NPADM+TK +P KF+ +
Sbjct: 1263 LSKNSMYHARTKHIDVRYHWIREMVD-DESLKVLKISTNENPADMLTKVVPRNKFELCKE 1321
Query: 2952 FI 2947
+
Sbjct: 1322 LV 1323
Score = 49.7 bits (117), Expect(3) = e-114
Identities = 27/54 (50%), Positives = 34/54 (62%)
Frame = -3
Query: 3470 VLRYLRGIADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTVVKG 3309
+LRYLRG L F G+ L+GY DAD AGD+D R+S+TGY+FT G
Sbjct: 1154 ILRYLRGTTGDCLCFG----GSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGG 1203
>gb|KYP40337.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1269
Score = 276 bits (705), Expect(3) = e-114
Identities = 138/257 (53%), Positives = 184/257 (71%), Gaps = 2/257 (0%)
Frame = -1
Query: 4228 VVKHTSIRLLLVVVTQFDLELEQMDVKTTFLHGELEEKIYMKQSEGYIDVGNEQNVCLLK 4049
VVK +IR +L +V +L LEQ+DVKT FLHG+L+E+IYM Q EG+ + G E VC LK
Sbjct: 841 VVKLNTIRTVLSIVASEELYLEQLDVKTAFLHGDLDEEIYMHQPEGFSEKGKENMVCRLK 900
Query: 4048 NALYGLKQSPRQWYKRFDTFMEQANFIRCEYESCVYIKQ-EAEPTYLLLYVDDILIAARD 3872
+LYGLKQ+PRQWY++F++FM + F +C + C + K+ + LLLYVDD+L+A +
Sbjct: 901 KSLYGLKQAPRQWYRKFESFMHKEGFKKCNADHCCFFKRYNSSYIILLLYVDDMLVAGSN 960
Query: 3871 MLHIREIKSLLPKEFDMKDLGAARKILGIEITRDRILGKLWLS*ENYILKVLKRFNMEEA 3692
M+ IR +K L KEFDMKDLG A+KILG++ITRD+ G L LS YI +VL+RFNM A
Sbjct: 961 MIEIRNLKKQLSKEFDMKDLGPAKKILGMQITRDKQKGTLQLSQAEYINRVLQRFNMSNA 1020
Query: 3691 RPVSAPMTGHFKLFSKQCPQSPDKDE-MSRVPYAYVVGSLMYAMACARSDLAYALSVVSR 3515
+PVS P+ HF+L + Q P++ ++ E M++ PYA +GSLMYAM C R D+ YA+ VVSR
Sbjct: 1021 KPVSTPLASHFRLSTDQSPKTEEEKELMAKTPYASAIGSLMYAMVCTRPDIGYAVGVVSR 1080
Query: 3514 FMSNF*KQH*EAVKWFL 3464
FMSN K H EAVKW L
Sbjct: 1081 FMSNPGKAHWEAVKWIL 1097
Score = 134 bits (336), Expect(3) = e-114
Identities = 64/118 (54%), Positives = 87/118 (73%)
Frame = -2
Query: 3318 GEGAISWKAELQETVALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSA 3139
G A+SW +++Q+ VALSTTEAEY+A EASKE +WL+GL+ G IQ+ +H DSQSA
Sbjct: 1143 GTTAVSWMSQIQKIVALSTTEAEYVAVTEASKELIWLQGLLTELGFIQERSVLHSDSQSA 1202
Query: 3138 IHLAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADMMTKAIPVEKFK 2965
IHLAK+ +H RTKHID+RYH +R ++ D+V+ + KI KNPADM+TK + EK +
Sbjct: 1203 IHLAKNSTFHSRTKHIDLRYHFIRSLLE-DEVLTLRKILGSKNPADMLTKVVTTEKLR 1259
Score = 57.4 bits (137), Expect(3) = e-114
Identities = 27/51 (52%), Positives = 38/51 (74%)
Frame = -3
Query: 3470 VLRYLRGIADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 3318
+LRYLR + L F + ++++QGYVDAD+AG++D RRSTTGY+FTV
Sbjct: 1096 ILRYLRATKEKCLCFSK----GELKVQGYVDADFAGEIDHRRSTTGYIFTV 1142
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 307 bits (786), Expect(2) = e-114
Identities = 161/277 (58%), Positives = 198/277 (71%), Gaps = 2/277 (0%)
Frame = -1
Query: 4228 VVKHTSIRLLLVVVTQFDLELEQMDVKTTFLHGELEEKIYMKQSEGYIDVGNEQNVCLLK 4049
VVKH+SIR L +V DLELEQ+DVKT FLHGELEE IYM Q EG+I G E+ VC LK
Sbjct: 905 VVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLK 964
Query: 4048 NALYGLKQSPRQWYKRFDTFMEQANFIRCEYESCVYIKQ-EAEPTYLLLYVDDILIAARD 3872
+LYGLKQSPRQW KRFD+FM +F R +Y+SCVYIK P YLLLYVDD+LIAA+
Sbjct: 965 RSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSPIYLLLYVDDMLIAAKS 1024
Query: 3871 MLHIREIKSLLPKEFDMKDLGAARKILGIEITRDRILGKLWLS*ENYILKVLKRFNMEEA 3692
+ I ++K LL EFDMKDLG+A+KILG+EI+RDR G L+LS NYI KVL+RFNM+ A
Sbjct: 1025 KIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNA 1084
Query: 3691 RPVSAPMTGHFKLFSKQCPQ-SPDKDEMSRVPYAYVVGSLMYAMACARSDLAYALSVVSR 3515
+ VS P+ HFKL + QCP + + MSRVPY+ VGSLMYAM C+R DL+YA+S+VSR
Sbjct: 1085 KAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSR 1144
Query: 3514 FMSNF*KQH*EAVKWFLDTCEGLRMLVCSFRDWRRGI 3404
+MSN K+H AV+W G F +G+
Sbjct: 1145 YMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDKGL 1181
Score = 138 bits (347), Expect(2) = e-114
Identities = 66/118 (55%), Positives = 85/118 (72%)
Frame = -2
Query: 3318 GEGAISWKAELQETVALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSA 3139
G A+SW+A LQ VALSTTEAEY+A EA KE +WLKGL ++ + +HCDSQSA
Sbjct: 1207 GSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSA 1266
Query: 3138 IHLAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADMMTKAIPVEKFK 2965
I+L KDQ +H+RTKHID++YH +R ++ K + + KI T NPADMMTK IPV KF+
Sbjct: 1267 IYLTKDQMFHERTKHIDIKYHFVRDVIEEGK-LKVCKISTHDNPADMMTKPIPVAKFE 1323
>dbj|GAU37926.1| hypothetical protein TSUD_269410 [Trifolium subterraneum]
Length = 1333
Score = 280 bits (717), Expect(3) = e-114
Identities = 145/263 (55%), Positives = 191/263 (72%), Gaps = 3/263 (1%)
Frame = -1
Query: 4228 VVKHTSIRLLLVVVTQFDLELEQMDVKTTFLHGELEEKIYMKQSEGYIDVGNEQNVCLLK 4049
VVKH SIR+L+ +V Q+DLEL+QMDVKT FLHGELEE IYMKQ EG+++ + VCLLK
Sbjct: 903 VVKHCSIRVLMAIVNQYDLELKQMDVKTAFLHGELEETIYMKQPEGFME--DNSKVCLLK 960
Query: 4048 NALYGLKQSPRQWYKRFDTFMEQANFIRCEYESCVYIKQEAEPT--YLLLYVDDILIAAR 3875
+LYGLK+ PRQWY+RFD F+ +A F+R Y+SCVY+ + E YLLLYVDDILIA
Sbjct: 961 KSLYGLKKIPRQWYRRFDDFLLKAGFVRSNYDSCVYMMKRNETIILYLLLYVDDILIAGS 1020
Query: 3874 DMLHIREIKSLLPKEFDMKDLGAARKILGIEITRDRILGKLWLS*ENYILKVLKRFNMEE 3695
+ I ++K L EF+MKDLG A++ILG++I RDR G+L+LS Y+ KV++RF M +
Sbjct: 1021 EKQEILKLKEKLNGEFEMKDLGNAKRILGMDIVRDRSKGELFLSQHGYLKKVVERFRMTD 1080
Query: 3694 ARPVSAPMTGHFKLFSKQCPQSPD-KDEMSRVPYAYVVGSLMYAMACARSDLAYALSVVS 3518
++ V+ P+ H KL KQCPQS D + +M PYA VGS+MY M C+R DL+YA+SVVS
Sbjct: 1081 SKVVNIPLGHHSKLSIKQCPQSEDERKKMETNPYASGVGSIMYGMVCSRPDLSYAISVVS 1140
Query: 3517 RFMSNF*KQH*EAVKWFLDTCEG 3449
RFM+N + H +A+KW L G
Sbjct: 1141 RFMANPGQVHWQALKWVLRYLNG 1163
Score = 134 bits (336), Expect(3) = e-114
Identities = 65/122 (53%), Positives = 89/122 (72%)
Frame = -2
Query: 3309 AISWKAELQETVALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSAIHL 3130
A++ KA Q VALSTT+AEYIA VE KEA+WLKG++ GI Q V++HC+SQSAIHL
Sbjct: 1210 AVTLKANQQSVVALSTTQAEYIALVEGVKEAIWLKGMIGEMGISQGCVRIHCNSQSAIHL 1269
Query: 3129 AKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADMMTKAIPVEKFKSALDF 2950
A Q YH+RTKHID+R H +R ++ ++I K+ +++NPADM K++P KFK +LD
Sbjct: 1270 ANHQVYHERTKHIDIRLHFVRDMIETKEII-AEKVASEENPADMFPKSLPRVKFKHSLDL 1328
Query: 2949 IH 2944
I+
Sbjct: 1329 IN 1330
Score = 51.6 bits (122), Expect(3) = e-114
Identities = 25/51 (49%), Positives = 36/51 (70%)
Frame = -3
Query: 3470 VLRYLRGIADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 3318
VLRYL G GL ++R + G L+GYV+ADYAG++D R+S + +VFT+
Sbjct: 1157 VLRYLNGSLKGGLKYRRTDPGRDA-LEGYVNADYAGNVDTRKSLSSFVFTL 1206
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa]
Length = 1335
Score = 307 bits (786), Expect(2) = e-114
Identities = 161/277 (58%), Positives = 199/277 (71%), Gaps = 2/277 (0%)
Frame = -1
Query: 4228 VVKHTSIRLLLVVVTQFDLELEQMDVKTTFLHGELEEKIYMKQSEGYIDVGNEQNVCLLK 4049
VVKH+SIR L +V DLELEQ+DVKT FLHGELEE IYM Q EG+I G E+ VC LK
Sbjct: 907 VVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLK 966
Query: 4048 NALYGLKQSPRQWYKRFDTFMEQANFIRCEYESCVYIKQ-EAEPTYLLLYVDDILIAARD 3872
+LYGLKQSPRQW KRFD+FM +F R +Y+SCVYIK P YLLLYVDD+LIAA+
Sbjct: 967 RSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSPIYLLLYVDDMLIAAKS 1026
Query: 3871 MLHIREIKSLLPKEFDMKDLGAARKILGIEITRDRILGKLWLS*ENYILKVLKRFNMEEA 3692
+ I ++K LL EFDMKDLG+A+KILG+EI+RDR G L+LS NYI KVL+RFNM+ A
Sbjct: 1027 KIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNA 1086
Query: 3691 RPVSAPMTGHFKLFSKQCPQSPDKDE-MSRVPYAYVVGSLMYAMACARSDLAYALSVVSR 3515
+ VS P+ HFKL + QCP + + E MSRVPY+ VGSLMYAM C+R DL+YA+S+VSR
Sbjct: 1087 KAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSR 1146
Query: 3514 FMSNF*KQH*EAVKWFLDTCEGLRMLVCSFRDWRRGI 3404
+MSN K+H A++W G F +G+
Sbjct: 1147 YMSNPGKEHWRALQWIFRYLRGTTYSCLKFGRTDKGL 1183
Score = 137 bits (344), Expect(2) = e-114
Identities = 66/118 (55%), Positives = 85/118 (72%)
Frame = -2
Query: 3318 GEGAISWKAELQETVALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSA 3139
G A+SW+A LQ VALSTTEAEY+A EA KE +WLKGL ++ + +HCDSQSA
Sbjct: 1209 GSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSA 1268
Query: 3138 IHLAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADMMTKAIPVEKFK 2965
I+L KDQ +H+RTKHID++YH +R ++ K + + KI T NPADMMTK IPV KF+
Sbjct: 1269 IYLTKDQMFHERTKHIDIKYHFVRDVIEEGK-LKVCKICTHDNPADMMTKPIPVAKFE 1325
>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
retrotransposon Ta1 (fragment)
emb|CAA37917.1| reverse transcriptase, partial [Arabidopsis thaliana]
Length = 587
Score = 263 bits (672), Expect(3) = e-113
Identities = 145/265 (54%), Positives = 181/265 (68%), Gaps = 5/265 (1%)
Frame = -1
Query: 4228 VVKHTSIRLLLVVVTQFDLELEQMDVKTTFLHGELEEKIYMKQSEGYIDVGNEQNVCLLK 4049
VVKHT IR+L+ VV DLELEQMDVKT FLHGELEE++YM+Q EG+I + VCLLK
Sbjct: 158 VVKHTFIRILMSVVVDQDLELEQMDVKTAFLHGELEEELYMEQPEGFISEDGKNKVCLLK 217
Query: 4048 NALYGLKQSPRQWYKRFDTFMEQANFIRCEYESCVYIKQ--EAEPTYLLLYVDDILIAAR 3875
LYGLKQSPRQW KRF+ FM NFIR E+++CVY+KQ E E YLLLYVDD+LIA +
Sbjct: 218 KLLYGLKQSPRQWNKRFNRFMIDQNFIRSEHDACVYVKQVTEQEHLYLLLYVDDMLIAGK 277
Query: 3874 DMLHIREIKSLLPKEFDMKDLGAARKILGIEITRDRILGKLWLS*ENYILKVLKRFNMEE 3695
+ I ++K L EF+MKD+G A +ILGI+I RDR G L +S +YI V++RFNM E
Sbjct: 278 NKSEINKVKEQLSMEFEMKDMGPASRILGIDIIRDRKNGVLRMSQASYIHNVVQRFNMAE 337
Query: 3694 ARPVSAPMTGHFKLFSKQCPQSPDKDEM---SRVPYAYVVGSLMYAMACARSDLAYALSV 3524
A+ +P+ HFKL + + D DE + VPYA VGS+MYAM R DLAY + +
Sbjct: 338 AKVTRSPIGAHFKLAAVR-----DDDECIDNNVVPYASAVGSIMYAMIGTRPDLAYDICL 392
Query: 3523 VSRFMSNF*KQH*EAVKWFLDTCEG 3449
VSR+M+ H EAVKW L G
Sbjct: 393 VSRYMARPGSIHWEAVKWILRYMRG 417
Score = 145 bits (365), Expect(3) = e-113
Identities = 71/128 (55%), Positives = 97/128 (75%)
Frame = -2
Query: 3318 GEGAISWKAELQETVALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSA 3139
G +SWKA LQ ALSTTEAE++A EA+KEALW+KGL+K G+ QD V + CDSQSA
Sbjct: 459 GGNTVSWKANLQSVTALSTTEAEFMALTEAAKEALWIKGLMKDLGLEQDKVTLWCDSQSA 518
Query: 3138 IHLAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADMMTKAIPVEKFKSA 2959
I L+K+ +H+RTKHIDVRY+ +R V+ V D++KI T +NPAD +TK+IPV KF+SA
Sbjct: 519 ICLSKNSTHHERTKHIDVRYNFIRDVVEAGDV-DVLKIHTSRNPADALTKSIPVNKFQSA 577
Query: 2958 LDFIHVLR 2935
L+ + +++
Sbjct: 578 LELLKLVK 585
Score = 56.2 bits (134), Expect(3) = e-113
Identities = 27/51 (52%), Positives = 37/51 (72%)
Frame = -3
Query: 3470 VLRYLRGIADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 3318
+LRY+RG D+ L+F + +E ++ GY D+DYA DLD RRS +GYVFTV
Sbjct: 411 ILRYMRGSQDLNLVFTKEKE---FRVTGYCDSDYAADLDRRRSVSGYVFTV 458