BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00004196
         (1559 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020254230.1| RNA polymerase sigma factor sigD, chloroplas...   462   e-157
ref|XP_008806591.1| PREDICTED: RNA polymerase sigma factor sigD,...   339   e-108
ref|XP_010922212.1| PREDICTED: RNA polymerase sigma factor sigD,...   339   e-108
ref|XP_020100505.1| RNA polymerase sigma factor sigD, chloroplas...   324   e-102
ref|XP_009397071.1| PREDICTED: RNA polymerase sigma factor sigD,...   308   6e-96
ref|XP_009397069.1| PREDICTED: RNA polymerase sigma factor sigD,...   303   7e-94
ref|XP_020692146.1| RNA polymerase sigma factor sigD, chloroplas...   296   9e-92
ref|XP_009397070.1| PREDICTED: RNA polymerase sigma factor sigD,...   291   3e-89
ref|XP_006851106.1| RNA polymerase sigma factor sigD, chloroplas...   260   1e-77
ref|XP_010269782.1| PREDICTED: RNA polymerase sigma factor sigD,...   256   5e-76
gb|PIA48462.1| hypothetical protein AQUCO_01400805v1 [Aquilegia ...   253   5e-75
ref|XP_018817139.1| PREDICTED: RNA polymerase sigma factor sigD,...   249   9e-74
emb|CBI24961.3| unnamed protein product, partial [Vitis vinifera]     244   5e-73
ref|XP_018442843.1| PREDICTED: RNA polymerase sigma factor sigD,...   246   2e-72
ref|XP_009121736.1| PREDICTED: RNA polymerase sigma factor sigD,...   244   4e-72
ref|XP_018465575.1| PREDICTED: RNA polymerase sigma factor sigD,...   244   5e-72
gb|KFK25599.1| hypothetical protein AALP_AA8G135300 [Arabis alpina]   244   8e-72
dbj|GAY36935.1| hypothetical protein CUMW_025480 [Citrus unshiu]      244   1e-71
ref|XP_002272444.2| PREDICTED: RNA polymerase sigma factor sigD,...   244   2e-71
ref|XP_006438958.1| RNA polymerase sigma factor sigD, chloroplas...   242   6e-71

>ref|XP_020254230.1| RNA polymerase sigma factor sigD, chloroplastic-like [Asparagus
            officinalis]
          Length = 388

 Score =  462 bits (1190), Expect = e-157
 Identities = 242/310 (78%), Positives = 259/310 (83%), Gaps = 5/310 (1%)
 Frame = -1

Query: 1130 DDDVDPARRLIKGRLSRSERSRYLTRRQEAEFSIYLKVGAMLEDTDS-QCTTTAGRTERR 954
            +DD      ++KG LS+SERSRYLTRRQEAEFS+ LKVGAMLEDTDS    TTA   ERR
Sbjct: 79   EDDEGLGGNVVKGSLSKSERSRYLTRRQEAEFSVSLKVGAMLEDTDSISNNTTAEAIERR 138

Query: 953  GKTDKACLRARECRERITLSYKRLVVSIATPYQGKGLSLQ----EGCIGLLQGAQRFDHK 786
            GK DKACLRARECRERITLSYKRLVVSIATPYQGKGLSLQ    EGCIGLLQGAQRFDH+
Sbjct: 139  GKADKACLRARECRERITLSYKRLVVSIATPYQGKGLSLQDLIQEGCIGLLQGAQRFDHR 198

Query: 785  KGYKLSTYVYWWXXXXXXXXXXXKSGIMRLPGGLRGVMAKVIDAKGLLQRKLGRPPSYEE 606
            KGYKLSTYVYWW           KSGIMRLPG LRG MAKVIDAK LLQRK GR PSYEE
Sbjct: 199  KGYKLSTYVYWWIKQAIIKAVATKSGIMRLPGSLRGTMAKVIDAKALLQRKSGRSPSYEE 258

Query: 605  IAESLNVNVSTVQLVCEKSGQPVSVDRSLNKEGLTLKDILPGSDGARPDVIITRKLMLKN 426
            IAE LN++VSTVQLVCEKSGQPVSVDR LNKEGLTLKDI+PGSD  RP+VII R+LML N
Sbjct: 259  IAEFLNLSVSTVQLVCEKSGQPVSVDRCLNKEGLTLKDIIPGSDEVRPEVIINRQLMLNN 318

Query: 425  LDQLLTKLSERERRIIELHYGLSSERRRSCEEIGRLLKLSRERVRQIHWIALTKLQEERS 246
            L +LL  L  RERR+IELHYGL+ ER RSCEEIGR+L LSRER+RQIHWIALTKLQEE+S
Sbjct: 319  LGKLLATLDARERRVIELHYGLNGERARSCEEIGRILNLSRERIRQIHWIALTKLQEEKS 378

Query: 245  MIECFASSVV 216
            MIECFAS VV
Sbjct: 379  MIECFASDVV 388


>ref|XP_008806591.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Phoenix
            dactylifera]
          Length = 449

 Score =  339 bits (869), Expect = e-108
 Identities = 182/322 (56%), Positives = 232/322 (72%), Gaps = 16/322 (4%)
 Frame = -1

Query: 1136 NSDDDVDP--ARRLIKGRLSRSERSRYLTRRQEAEFSIYLKVGAMLEDT----------D 993
            N DD+ D   +R L++G  SRSERSRYLT R+EAEFS YLK  AMLE            D
Sbjct: 128  NDDDEADEYSSRYLMEGCSSRSERSRYLTPREEAEFSHYLKQEAMLETAGKQIRDCSPLD 187

Query: 992  SQCTTTAGRTERRGKTDKACLRARECRERITLSYKRLVVSIATPYQGKGLSLQ----EGC 825
            S C   +   +RR  +++  L+ARECRERITLSYKRLVVSIATPYQGKGL LQ    EGC
Sbjct: 188  SGCAAISASMKRRN-SERTLLKARECRERITLSYKRLVVSIATPYQGKGLGLQDLIQEGC 246

Query: 824  IGLLQGAQRFDHKKGYKLSTYVYWWXXXXXXXXXXXKSGIMRLPGGLRGVMAKVIDAKGL 645
            IGLL+GA+RFD KKGYKLSTY YWW           KS ++R+PG L   M K++++K L
Sbjct: 247  IGLLRGARRFDSKKGYKLSTYAYWWIRQAILKAIANKSRMVRMPGNLCEAMNKIMESKSL 306

Query: 644  LQRKLGRPPSYEEIAESLNVNVSTVQLVCEKSGQPVSVDRSLNKEGLTLKDILPGSDGAR 465
            L+R+LGR P+Y+EIA+   + VS+V+++ E+S  P+SVD+ +NK+GLTLKDI+PG D  R
Sbjct: 307  LRRQLGRNPTYDEIADFAGIGVSSVRIISERSRHPISVDQPVNKQGLTLKDIIPGPDEIR 366

Query: 464  PDVIITRKLMLKNLDQLLTKLSERERRIIELHYGLSSERRRSCEEIGRLLKLSRERVRQI 285
            P+VI+ R+ ML+N+ +LL  L+ RE+ II LHYGL+ E  RSC+EIGRLL LSRER+RQI
Sbjct: 367  PEVIVNRQEMLQNMGKLLKILNGREQYIIRLHYGLNGETARSCDEIGRLLNLSRERIRQI 426

Query: 284  HWIALTKLQEERSMIECFASSV 219
            H  AL +L+EERS+IEC   SV
Sbjct: 427  HCSALRRLREERSLIECLRQSV 448


>ref|XP_010922212.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Elaeis
            guineensis]
          Length = 455

 Score =  339 bits (869), Expect = e-108
 Identities = 181/321 (56%), Positives = 230/321 (71%), Gaps = 14/321 (4%)
 Frame = -1

Query: 1139 DNSDDDVDPARRLIKGRLSRSERSRYLTRRQEAEFSIYLKVGAMLEDT----------DS 990
            D++ DD D    LI+G  SRSERSRYLT R+EAEFS YLK  AMLE            DS
Sbjct: 135  DDNKDDEDSNSYLIEGCSSRSERSRYLTTREEAEFSRYLKQEAMLETAGKQIRECSPLDS 194

Query: 989  QCTTTAGRTERRGKTDKACLRARECRERITLSYKRLVVSIATPYQGKGLSLQ----EGCI 822
             C   A R +RR  +++  L+ARECRERITLSYKRLVVSIATPYQGKGLSLQ    EGCI
Sbjct: 195  GCAAIAARMKRR-HSERTLLKARECRERITLSYKRLVVSIATPYQGKGLSLQDLIQEGCI 253

Query: 821  GLLQGAQRFDHKKGYKLSTYVYWWXXXXXXXXXXXKSGIMRLPGGLRGVMAKVIDAKGLL 642
            GLL+GA RFD+KKGYKLSTY YWW           KS ++RLPG L     K++ +  LL
Sbjct: 254  GLLRGAWRFDYKKGYKLSTYAYWWIRQAILKAIANKSRMVRLPGNLCEAANKIMKSNSLL 313

Query: 641  QRKLGRPPSYEEIAESLNVNVSTVQLVCEKSGQPVSVDRSLNKEGLTLKDILPGSDGARP 462
            +++LGR P+Y+EIA+   +  S+V+++ E+S  P+SVD+ +NK+GLTLKDI+PG D  RP
Sbjct: 314  RKQLGRNPTYDEIADFTGIGASSVRIISERSRHPISVDQPVNKQGLTLKDIIPGPDEIRP 373

Query: 461  DVIITRKLMLKNLDQLLTKLSERERRIIELHYGLSSERRRSCEEIGRLLKLSRERVRQIH 282
            +V++ R+ ML+N+++LL  LS RE+ II LHYGL+ E  RSC+EIGRLL LSRER+RQIH
Sbjct: 374  EVLVNRQEMLQNMEKLLKTLSGREQYIITLHYGLNGETARSCDEIGRLLNLSRERIRQIH 433

Query: 281  WIALTKLQEERSMIECFASSV 219
              AL +L+EE+S+IEC   SV
Sbjct: 434  CSALRRLREEKSLIECLRQSV 454


>ref|XP_020100505.1| RNA polymerase sigma factor sigD, chloroplastic [Ananas comosus]
          Length = 430

 Score =  324 bits (830), Expect = e-102
 Identities = 170/309 (55%), Positives = 225/309 (72%), Gaps = 8/309 (2%)
 Frame = -1

Query: 1139 DNSDDDVDPARRLIKGRLSRSERSRYLTRRQEAEFSIYLKVGAMLEDTDSQC----TTTA 972
            D+ ++D    R + + R S+ E+SRYLTRRQEA+FS+YLK  AMLE  ++Q     +TT+
Sbjct: 115  DDEEEDGRMFRAVEQRRFSKVEKSRYLTRRQEAQFSLYLKEEAMLEKENNQMGEFTSTTS 174

Query: 971  GRTERRGKTDKACLRARECRERITLSYKRLVVSIATPYQGKGLSLQ----EGCIGLLQGA 804
                RR   DKA LRARE RERI LSYKRLVVSIA+ YQG+GL LQ    EGCIGLL+GA
Sbjct: 175  AELIRRSSRDKALLRARESRERIILSYKRLVVSIASTYQGRGLGLQDLIQEGCIGLLRGA 234

Query: 803  QRFDHKKGYKLSTYVYWWXXXXXXXXXXXKSGIMRLPGGLRGVMAKVIDAKGLLQRKLGR 624
            QRFDHKKGYKLSTYVYWW           KS I+RLPG L     +V +A  +L+R+LGR
Sbjct: 235  QRFDHKKGYKLSTYVYWWIKQAIVRAIVNKSRIVRLPGSLCEAANRVAEANSILRRRLGR 294

Query: 623  PPSYEEIAESLNVNVSTVQLVCEKSGQPVSVDRSLNKEGLTLKDILPGSDGARPDVIITR 444
             P+YEEIA+ ++V VS+V+++ E+   P+S+D+ +NKEGL+LK+I+ G D  RP+ I+TR
Sbjct: 295  WPTYEEIADFVHVGVSSVRIISERIRHPISIDQPVNKEGLSLKEIILGPDEIRPETIVTR 354

Query: 443  KLMLKNLDQLLTKLSERERRIIELHYGLSSERRRSCEEIGRLLKLSRERVRQIHWIALTK 264
            +++L+ L++LL  LS RE  I+ LHYGL+ E  RSCEEIG+L+ LSRER+RQIH  AL +
Sbjct: 355  QIILRTLEELLKTLSAREEHIMRLHYGLNGETARSCEEIGKLMNLSRERIRQIHGNALAR 414

Query: 263  LQEERSMIE 237
            L+EE+ +IE
Sbjct: 415  LKEEKGLIE 423


>ref|XP_009397071.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X3
            [Musa acuminata subsp. malaccensis]
          Length = 468

 Score =  308 bits (789), Expect = 6e-96
 Identities = 171/316 (54%), Positives = 224/316 (70%), Gaps = 15/316 (4%)
 Frame = -1

Query: 1139 DNSDDDVDPARRLI-KGRLSRSERSRYLTRRQEAEFSIYLKVGAMLE----------DTD 993
            D+S++D   +R L+ K   SRSERS+YLT RQEAEFS YLK  AM++            D
Sbjct: 149  DDSEEDGIASRFLLGKTCSSRSERSKYLTSRQEAEFSRYLKEEAMMDAEAQLLRGCSSLD 208

Query: 992  SQCTTTAGRTERRGKTDKACLRARECRERITLSYKRLVVSIATPYQGKGLSLQ----EGC 825
            S+     GR +RR  ++KA LRARE RERITLSYKRLVVSIA  YQGKGL++Q    EGC
Sbjct: 209  SENVAQYGRMKRR--SEKAFLRARESRERITLSYKRLVVSIAATYQGKGLTIQDLIQEGC 266

Query: 824  IGLLQGAQRFDHKKGYKLSTYVYWWXXXXXXXXXXXKSGIMRLPGGLRGVMAKVIDAKGL 645
            IGLL+GAQRFDH KGYKLSTYVYWW           KS ++RLPG L   M KV +A   
Sbjct: 267  IGLLRGAQRFDHMKGYKLSTYVYWWIKQGIVRAIANKSRLIRLPGNLCEAMNKVAEANSS 326

Query: 644  LQRKLGRPPSYEEIAESLNVNVSTVQLVCEKSGQPVSVDRSLNKEGLTLKDILPGSDGAR 465
            L+R+LGR P+Y+E+A+ ++++VS V+LV E+S  P+S+D+ + KEGL L DI+P  D  R
Sbjct: 327  LRRRLGRSPTYKEVADLIDMDVSNVRLVSERSRPPISIDQ-VGKEGLRLMDIIPAQDDRR 385

Query: 464  PDVIITRKLMLKNLDQLLTKLSERERRIIELHYGLSSERRRSCEEIGRLLKLSRERVRQI 285
            P+ ++ R+L+L+NL++ L  LS+RE  I+ LHYGL+ E  RSC+EIGRL+ LSRERVRQI
Sbjct: 386  PETVVDRQLLLQNLEKALKTLSDREEYIVRLHYGLNGETVRSCDEIGRLMNLSRERVRQI 445

Query: 284  HWIALTKLQEERSMIE 237
            H  AL +L+E++S +E
Sbjct: 446  HCGALKRLREDKSFVE 461


>ref|XP_009397069.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1
            [Musa acuminata subsp. malaccensis]
          Length = 481

 Score =  303 bits (776), Expect = 7e-94
 Identities = 171/329 (51%), Positives = 224/329 (68%), Gaps = 28/329 (8%)
 Frame = -1

Query: 1139 DNSDDDVDPARRLI-KGRLSRSERSRYLTRRQEAEFSIYLKVGAMLE----------DTD 993
            D+S++D   +R L+ K   SRSERS+YLT RQEAEFS YLK  AM++            D
Sbjct: 149  DDSEEDGIASRFLLGKTCSSRSERSKYLTSRQEAEFSRYLKEEAMMDAEAQLLRGCSSLD 208

Query: 992  SQCTTTAGRTERRGKTDKACLRARECRERITLSYKRLVVSIATPYQGKGLSLQ------- 834
            S+     GR +RR  ++KA LRARE RERITLSYKRLVVSIA  YQGKGL++Q       
Sbjct: 209  SENVAQYGRMKRR--SEKAFLRARESRERITLSYKRLVVSIAATYQGKGLTIQDLIQKIS 266

Query: 833  ----------EGCIGLLQGAQRFDHKKGYKLSTYVYWWXXXXXXXXXXXKSGIMRLPGGL 684
                      EGCIGLL+GAQRFDH KGYKLSTYVYWW           KS ++RLPG L
Sbjct: 267  QVIDHTALFQEGCIGLLRGAQRFDHMKGYKLSTYVYWWIKQGIVRAIANKSRLIRLPGNL 326

Query: 683  RGVMAKVIDAKGLLQRKLGRPPSYEEIAESLNVNVSTVQLVCEKSGQPVSVDRSLNKEGL 504
               M KV +A   L+R+LGR P+Y+E+A+ ++++VS V+LV E+S  P+S+D+ + KEGL
Sbjct: 327  CEAMNKVAEANSSLRRRLGRSPTYKEVADLIDMDVSNVRLVSERSRPPISIDQ-VGKEGL 385

Query: 503  TLKDILPGSDGARPDVIITRKLMLKNLDQLLTKLSERERRIIELHYGLSSERRRSCEEIG 324
             L DI+P  D  RP+ ++ R+L+L+NL++ L  LS+RE  I+ LHYGL+ E  RSC+EIG
Sbjct: 386  RLMDIIPAQDDRRPETVVDRQLLLQNLEKALKTLSDREEYIVRLHYGLNGETVRSCDEIG 445

Query: 323  RLLKLSRERVRQIHWIALTKLQEERSMIE 237
            RL+ LSRERVRQIH  AL +L+E++S +E
Sbjct: 446  RLMNLSRERVRQIHCGALKRLREDKSFVE 474


>ref|XP_020692146.1| RNA polymerase sigma factor sigD, chloroplastic [Dendrobium
            catenatum]
          Length = 425

 Score =  296 bits (757), Expect = 9e-92
 Identities = 158/312 (50%), Positives = 218/312 (69%), Gaps = 5/312 (1%)
 Frame = -1

Query: 1139 DNSDDDVDPARRLIKGRLSRSERSRYLTRRQEAEFSIYLKVGAMLEDTDSQCTTT-AGRT 963
            D S  D      L +  LS++ERSRYLT  QEAEFS  LKV AM+E    + T++ A R 
Sbjct: 113  DLSGKDNAEGSGLAESCLSKTERSRYLTWDQEAEFSSCLKVVAMMEVPSGRKTSSGAARM 172

Query: 962  ERRGKTDKACLRARECRERITLSYKRLVVSIATPYQGKGLSLQ----EGCIGLLQGAQRF 795
             RR + D+A L+ARECRERIT SYKRLVVS+A  YQGKGLSLQ    EG IGLL+GAQRF
Sbjct: 173  RRRRRNDRALLKARECRERITKSYKRLVVSVAAAYQGKGLSLQDLIQEGSIGLLRGAQRF 232

Query: 794  DHKKGYKLSTYVYWWXXXXXXXXXXXKSGIMRLPGGLRGVMAKVIDAKGLLQRKLGRPPS 615
            D+KKG ++STYVYWW            S I+RLPG L  + A++++ K LL+ KL R P+
Sbjct: 233  DYKKGNRMSTYVYWWIRQAIMKALAKNSNIVRLPGYLCTMSARIVETKLLLREKLKRSPT 292

Query: 614  YEEIAESLNVNVSTVQLVCEKSGQPVSVDRSLNKEGLTLKDILPGSDGARPDVIITRKLM 435
            YEEIAE++ ++ S+VQ++CE+S +P+S+D+ +N E + LKDI+ G D  RP+VI+ RKL+
Sbjct: 293  YEEIAETVGISTSSVQIICERSHRPISIDQPINGEKIALKDIIQGPDERRPEVIVNRKLL 352

Query: 434  LKNLDQLLTKLSERERRIIELHYGLSSERRRSCEEIGRLLKLSRERVRQIHWIALTKLQE 255
            L+N++ LL  L ERE  II  +YG++ E   + +EIGR + LSRERVRQI++ AL +++E
Sbjct: 353  LQNMEMLLKALGEREEHIIRSYYGINGETSLTFDEIGRSINLSRERVRQIYYNALARMKE 412

Query: 254  ERSMIECFASSV 219
            ++ ++  F + V
Sbjct: 413  DKIVLGGFKNFV 424


>ref|XP_009397070.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X2
            [Musa acuminata subsp. malaccensis]
          Length = 472

 Score =  291 bits (744), Expect = 3e-89
 Identities = 166/329 (50%), Positives = 218/329 (66%), Gaps = 28/329 (8%)
 Frame = -1

Query: 1139 DNSDDDVDPARRLI-KGRLSRSERSRYLTRRQEAEFSIYLKVGAMLE----------DTD 993
            D+S++D   +R L+ K   SRSERS+YLT RQEAEFS YLK  AM++            D
Sbjct: 149  DDSEEDGIASRFLLGKTCSSRSERSKYLTSRQEAEFSRYLKEEAMMDAEAQLLRGCSSLD 208

Query: 992  SQCTTTAGRTERRGKTDKACLRARECRERITLSYKRLVVSIATPYQGKGLSLQ------- 834
            S+     GR +RR  ++KA LRARE RERITLSYKRLVVSIA  YQGKGL++Q       
Sbjct: 209  SENVAQYGRMKRR--SEKAFLRARESRERITLSYKRLVVSIAATYQGKGLTIQDLIQKIS 266

Query: 833  ----------EGCIGLLQGAQRFDHKKGYKLSTYVYWWXXXXXXXXXXXKSGIMRLPGGL 684
                      EGCIGLL+GAQRFDH KGYKLSTYVYWW           KS ++RLPG L
Sbjct: 267  QVIDHTALFQEGCIGLLRGAQRFDHMKGYKLSTYVYWWIKQGIVRAIANKSRLIRLPGNL 326

Query: 683  RGVMAKVIDAKGLLQRKLGRPPSYEEIAESLNVNVSTVQLVCEKSGQPVSVDRSLNKEGL 504
               M KV +A   L+R+LGR P+Y+E+A+ ++++VS V+LV E+S  P+S+D        
Sbjct: 327  CEAMNKVAEANSSLRRRLGRSPTYKEVADLIDMDVSNVRLVSERSRPPISID-------- 378

Query: 503  TLKDILPGSDGARPDVIITRKLMLKNLDQLLTKLSERERRIIELHYGLSSERRRSCEEIG 324
              +DI+P  D  RP+ ++ R+L+L+NL++ L  LS+RE  I+ LHYGL+ E  RSC+EIG
Sbjct: 379  --QDIIPAQDDRRPETVVDRQLLLQNLEKALKTLSDREEYIVRLHYGLNGETVRSCDEIG 436

Query: 323  RLLKLSRERVRQIHWIALTKLQEERSMIE 237
            RL+ LSRERVRQIH  AL +L+E++S +E
Sbjct: 437  RLMNLSRERVRQIHCGALKRLREDKSFVE 465


>ref|XP_006851106.1| RNA polymerase sigma factor sigD, chloroplastic [Amborella
            trichopoda]
 gb|ERN12687.1| hypothetical protein AMTR_s00025p00248060 [Amborella trichopoda]
          Length = 449

 Score =  260 bits (664), Expect = 1e-77
 Identities = 145/294 (49%), Positives = 194/294 (65%), Gaps = 16/294 (5%)
 Frame = -1

Query: 1079 SERSRYLTRRQEAEFSIYLKVGAMLEDTDSQCTTTAGRTERRGKTDKAC-LR-------- 927
            S    YLTRR+EAEFS+ L+ GA LE    +     GR   RG+  +A  +R        
Sbjct: 145  SSSEDYLTRREEAEFSLCLREGARLEGIRRKLREKRGREPSRGQWAEAVGMRESSMERRL 204

Query: 926  --ARECRERITLSYKRLVVSIATPYQGKGLSL----QEGCIGLLQGAQRFDHKKGYKLST 765
              ARECR RIT SY+RLVVSIAT Y GKG+SL    QEG +GLL+GA+RFDH++GYKLST
Sbjct: 205  GIARECRNRITNSYRRLVVSIATSYPGKGMSLSDLIQEGSLGLLRGAERFDHRRGYKLST 264

Query: 764  YVYWWXXXXXXXXXXXKSGIMRLPGGLRGVMAKVIDAKGLLQRKLGRPPSYEEIAESLNV 585
            YVYWW           KS I+RLPG +   +AKV +A G+L  +LGR PS EEIAE   +
Sbjct: 265  YVYWWIKQAIIKAIATKSRIVRLPGSMCATVAKVSEASGVLMSRLGRRPSQEEIAEKTGI 324

Query: 584  NVSTVQLVCEKSGQPVSVDRSLNKEG-LTLKDILPGSDGARPDVIITRKLMLKNLDQLLT 408
             +S V+LV E+   P+S+D+ L + G ++LKDI+ G +  RP+ ++ R+ M   ++ LL 
Sbjct: 325  ALSRVRLVTERCRLPLSIDQPLGRHGDISLKDIIAGPEETRPEEMVKREWMKGTMEMLLQ 384

Query: 407  KLSERERRIIELHYGLSSERRRSCEEIGRLLKLSRERVRQIHWIALTKLQEERS 246
             LSERE  I+ L +G++ E  +SC+EIGRLL LSRERVRQIH+IAL KL+++ +
Sbjct: 385  TLSEREECIVRLQFGMNGETPKSCDEIGRLLNLSRERVRQIHYIALAKLRQQHA 438


>ref|XP_010269782.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Nelumbo
            nucifera]
          Length = 455

 Score =  256 bits (654), Expect = 5e-76
 Identities = 149/312 (47%), Positives = 201/312 (64%), Gaps = 19/312 (6%)
 Frame = -1

Query: 1121 VDPARRLIKGRLSRSERSRYLTRRQEAEFSIYLKVGAMLE-------------DTDSQCT 981
            VD +   ++    R  RS YLT ++EAEFS+YLK  A LE              T SQ  
Sbjct: 139  VDLSNNCMESCSFRPSRSMYLTPKEEAEFSLYLKEEARLEAARTRLRETNEHEPTSSQWA 198

Query: 980  TTAGRTERRGKT-DKACLRARECRERITLSYKRLVVSIATPYQGKGLSLQ----EGCIGL 816
              AG    RG T DK   +ARE RERI  SY+RL+ SIA+ YQGKGLSLQ    EG IGL
Sbjct: 199  EAAGM---RGATLDKMLCQARESRERIVFSYRRLIFSIASGYQGKGLSLQDLIQEGSIGL 255

Query: 815  LQGAQRFDHKKGYKLSTYVYWWXXXXXXXXXXXKSGIMRLPGGLRGVMAKVIDAKGLLQR 636
            L+G +RFD +KGYKLSTYVYWW           KS ++RLPG +  +MAK+ +A  +L  
Sbjct: 256  LRGXERFDPRKGYKLSTYVYWWIKQAIIRAIASKSRMVRLPGSVSEMMAKIAEANTVLST 315

Query: 635  KLGRPPSYEEIAESLNVNVSTVQLVCEKSGQPVSVDRSLNKEG-LTLKDILPGSDGARPD 459
            +LGR P+Y+EIA+ L + VSTV L+CE+S  P+SVDR+ +  G + L++I+ G +   P+
Sbjct: 316  RLGRVPTYDEIADMLGICVSTVSLLCERSRPPMSVDRTYSDHGCMKLQEIISGPEETTPE 375

Query: 458  VIITRKLMLKNLDQLLTKLSERERRIIELHYGLSSERRRSCEEIGRLLKLSRERVRQIHW 279
             ++ R+LM + +++LL  L ERE  I+ L++GL+ E   S EEIGRLL LSRERVRQI++
Sbjct: 376  TMVNRQLMKQEVERLLKILGEREANILRLYFGLNGETPCSFEEIGRLLNLSRERVRQIYY 435

Query: 278  IALTKLQEERSM 243
            IAL KLQ+  ++
Sbjct: 436  IALAKLQQSNTI 447


>gb|PIA48462.1| hypothetical protein AQUCO_01400805v1 [Aquilegia coerulea]
          Length = 440

 Score =  253 bits (646), Expect = 5e-75
 Identities = 138/293 (47%), Positives = 195/293 (66%), Gaps = 16/293 (5%)
 Frame = -1

Query: 1088 LSRSERSRYLTRRQEAEFSIYLKVGAMLEDT--------DSQCTTTAGRTE---RRGKTD 942
            L R   S  LT ++EAEF++YLK GA LE          +S  TT+        +R   +
Sbjct: 134  LFRKSSSARLTPKEEAEFTLYLKEGARLEAARTRALQVRESDFTTSKWAKSLGMKRSSLE 193

Query: 941  KACLRARECRERITLSYKRLVVSIATPYQGKGLSLQ----EGCIGLLQGAQRFDHKKGYK 774
            +   +AR+ +E I +SY+RLVVSIAT YQGKGLSLQ    EG IGLL GA++FD KKGYK
Sbjct: 194  RTLCKARKSKEHIIISYRRLVVSIATGYQGKGLSLQDLIQEGSIGLLLGAEKFDPKKGYK 253

Query: 773  LSTYVYWWXXXXXXXXXXXKSGIMRLPGGLRGVMAKVIDAKGLLQRKLGRPPSYEEIAES 594
            LSTY YWW           KS ++RLPG +  ++ K+ +A   L R+L R P+Y EI++ 
Sbjct: 254  LSTYAYWWIKQAIIRAIANKSRLIRLPGSMCDMVPKIAEANNELSRRLQRQPTYNEISDM 313

Query: 593  LNVNVSTVQLVCEKSGQPVSVDRSLNKEG-LTLKDILPGSDGARPDVIITRKLMLKNLDQ 417
            + ++VS+++LVC ++  P+S+D++L   G +TL+DI+ G +  RP++++ +++M K + +
Sbjct: 314  IAIHVSSIRLVCTRNRPPISLDQTLTDTGCMTLQDIISGPEHLRPEIMVNKQVMKKEIHR 373

Query: 416  LLTKLSERERRIIELHYGLSSERRRSCEEIGRLLKLSRERVRQIHWIALTKLQ 258
             LTKL+ERE  I+ L+YGL+ E  RSCEEI RLL LSRERVRQIH IALTKL+
Sbjct: 374  FLTKLTEREEFIVRLYYGLNGETARSCEEIARLLSLSRERVRQIHSIALTKLR 426


>ref|XP_018817139.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1
            [Juglans regia]
          Length = 426

 Score =  249 bits (636), Expect = 9e-74
 Identities = 137/298 (45%), Positives = 201/298 (67%), Gaps = 16/298 (5%)
 Frame = -1

Query: 1100 IKGRLSR-SERSRYLTRRQEAEFSIYLKVGAMLEDTDSQCTTTAGRTERRGK-------- 948
            +  R SR S +SR L+ R+EAE  + +K GA LE   ++ T   GR     +        
Sbjct: 117  VGSRSSRGSVKSRNLSSREEAELCLCVKEGARLEVASTRITKAQGRQPTSKQLAKAIGME 176

Query: 947  --TDKACLRARECRERITLSYKRLVVSIATPYQGKGLS----LQEGCIGLLQGAQRFDHK 786
               DK     R+ RERI+ SY+RLVVSIA  YQGKGLS    +QEG IGLL+G ++F+ +
Sbjct: 177  RSVDKILCDGRDSRERISRSYRRLVVSIAKGYQGKGLSFRDLIQEGSIGLLRGVEKFEPE 236

Query: 785  KGYKLSTYVYWWXXXXXXXXXXXKSGIMRLPGGLRGVMAKVIDAKGLLQRKLGRPPSYEE 606
            +GY+LSTYVYWW           +S I+RLPG +  ++A+  +A+ LL +KLGR P+++E
Sbjct: 237  RGYRLSTYVYWWIKQAIIKAIANESRIVRLPGHMCRMVARTAEARNLLSKKLGRLPTHDE 296

Query: 605  IAESLNVNVSTVQLVCEKSGQPVSVDRSLNKEG-LTLKDILPGSDGARPDVIITRKLMLK 429
            IAE LNV++S V+LV E++  P+S+DR++  +G +TL++I+ G D   P+ ++ ++LM +
Sbjct: 297  IAEVLNVHISIVRLVSERNRPPISLDRAITDQGSITLQEIISGPDETTPEKMVKKQLMKQ 356

Query: 428  NLDQLLTKLSERERRIIELHYGLSSERRRSCEEIGRLLKLSRERVRQIHWIALTKLQE 255
             L++LLT L +RE  I+ LH+GL+ E  RSCEEIGR+LKLSRER+RQI+ IAL+KL++
Sbjct: 357  ELEKLLTSLDKREEHILRLHFGLNGEPPRSCEEIGRMLKLSRERIRQINGIALSKLRQ 414


>emb|CBI24961.3| unnamed protein product, partial [Vitis vinifera]
          Length = 319

 Score =  244 bits (622), Expect = 5e-73
 Identities = 142/291 (48%), Positives = 191/291 (65%), Gaps = 18/291 (6%)
 Frame = -1

Query: 1073 RSRYLTRRQEAEFSIYLKVGAMLE-------------DTDSQCTTTAGRTERRGKTDKAC 933
            RS  LT R+EAEF + LK  A LE              T +Q     G   +R   DK  
Sbjct: 19   RSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGI--KRSSLDKML 76

Query: 932  LRARECRERITLSYKRLVVSIATPYQGKGLSLQ----EGCIGLLQGAQRFDHKKGYKLST 765
               RE RERI  SY+RLVVSIA  YQGKGLSLQ    EG IGLL+GA+RFD  +GYKLST
Sbjct: 77   CNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLST 136

Query: 764  YVYWWXXXXXXXXXXXKSGIMRLPGGLRGVMAKVIDAKGLLQRKLGRPPSYEEIAESLNV 585
            YVYWW           KS I+RLPG +  ++AK+ +A+ +L R+L R P+Y+EIAE ++V
Sbjct: 137  YVYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDV 196

Query: 584  NVSTVQLVCEKSGQPVSVDRSLNKEG-LTLKDILPGSDGARPDVIITRKLMLKNLDQLLT 408
            NVSTV+LV E+S  P+SVD+++  +G +TL++I+PG D   P  ++ R+LM + +++ L 
Sbjct: 197  NVSTVRLVSERSRTPISVDQAVTSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALN 256

Query: 407  KLSERERRIIELHYGLSSERRRSCEEIGRLLKLSRERVRQIHWIALTKLQE 255
             L ERE  I+ L++G++ E   S EEIGRL+KLSRERVRQI+ IAL+KL++
Sbjct: 257  TLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLRQ 307


>ref|XP_018442843.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
            [Raphanus sativus]
          Length = 422

 Score =  246 bits (627), Expect = 2e-72
 Identities = 142/308 (46%), Positives = 200/308 (64%), Gaps = 14/308 (4%)
 Frame = -1

Query: 1139 DNSDDDVDPARRLIKGRLSRSERSRYLTRRQEAEFSIYLKVGAMLEDTD---------SQ 987
            +N D +V+P    +   +  S RS +L+R +E +  +YLK GA+LE+           S 
Sbjct: 100  ENIDQEVEPVAEPVSVPVGTS-RSGFLSRSEEVQLCLYLKEGAILENLGASVEENEMVSV 158

Query: 986  CTTTAGRTERRGKTDKACLRARECRERITLSYKRLVVSIATPYQGKGLSLQ----EGCIG 819
              ++ G+ +++   ++   R RE RE+IT  Y+RLVVSIAT YQGKGL+LQ    EG IG
Sbjct: 159  LLSSTGKGKKKRSANEILCRRREAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIG 218

Query: 818  LLQGAQRFDHKKGYKLSTYVYWWXXXXXXXXXXXKSGIMRLPGGLRGVMAKVIDAKGLLQ 639
            LL+GA+RFD ++GYKLSTYVYWW           KS +++LPG +  + AKV +A  +L 
Sbjct: 219  LLRGAERFDPERGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLT 278

Query: 638  RKLGRPPSYEEIAESLNVNVSTVQLVCEKSGQPVSVDRSLNKEG-LTLKDILPGSDGARP 462
            RKL R PS EEIAE LN+NVS V+L  E+S  PVS+DR  +  G +TL++I+ G D  RP
Sbjct: 279  RKLRRAPSSEEIAEHLNINVSAVRLAVERSRSPVSLDRVASHYGRMTLQEIVKGPDETRP 338

Query: 461  DVIITRKLMLKNLDQLLTKLSERERRIIELHYGLSSERRRSCEEIGRLLKLSRERVRQIH 282
            + ++ R+ M + + QLL  L+ RE R++ L++GL+ E   S EEIG+ LKLSRERVRQI+
Sbjct: 339  EEMVKREHMKEGIKQLLGTLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQIN 398

Query: 281  WIALTKLQ 258
             IAL KL+
Sbjct: 399  GIALGKLR 406


>ref|XP_009121736.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
            [Brassica rapa]
          Length = 417

 Score =  244 bits (624), Expect = 4e-72
 Identities = 145/313 (46%), Positives = 199/313 (63%), Gaps = 17/313 (5%)
 Frame = -1

Query: 1145 LYDNSDDDVDPARRLIKGRLS---RSERSRYLTRRQEAEFSIYLKVGAMLEDTD------ 993
            L    DDDVD     +   +S    + RS +L+R  E +  +YLK GA+LE+        
Sbjct: 89   LEPEEDDDVDQVVEPVAEPVSIPVGASRSGFLSRSDEVQLCLYLKEGAILENLGTSGEEN 148

Query: 992  ---SQCTTTAGRTERRGKTDKACLRARECRERITLSYKRLVVSIATPYQGKGLSLQ---- 834
               S   ++ G+ +++   ++   R RE RE+IT  Y+RLVVSIAT YQGKGL+LQ    
Sbjct: 149  GMVSVLLSSTGKGKKKRSANEILCRRREAREKITRCYRRLVVSIATGYQGKGLNLQDLIQ 208

Query: 833  EGCIGLLQGAQRFDHKKGYKLSTYVYWWXXXXXXXXXXXKSGIMRLPGGLRGVMAKVIDA 654
            EG IGLL+GA+RFD ++GYKLSTYVYWW           KS +++LPG +  + AKV +A
Sbjct: 209  EGSIGLLRGAERFDPERGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEA 268

Query: 653  KGLLQRKLGRPPSYEEIAESLNVNVSTVQLVCEKSGQPVSVDRSLNKEG-LTLKDILPGS 477
              +L RKL R PS EEIAE LNVNVS V+L  E+S  PVS+DR  +  G +TL++I+ G 
Sbjct: 269  SNVLTRKLRRAPSSEEIAEHLNVNVSAVRLAVERSRSPVSLDRVASHYGRMTLQEIVRGP 328

Query: 476  DGARPDVIITRKLMLKNLDQLLTKLSERERRIIELHYGLSSERRRSCEEIGRLLKLSRER 297
            D  RP+ ++ R+ M + + QLL  L+ RE R++ L++GL+ E   S EEIG+ LKLSRER
Sbjct: 329  DETRPEEMVKREHMKEGIKQLLGTLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRER 388

Query: 296  VRQIHWIALTKLQ 258
            VRQI+ IAL KL+
Sbjct: 389  VRQINGIALAKLR 401


>ref|XP_018465575.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
            [Raphanus sativus]
          Length = 423

 Score =  244 bits (624), Expect = 5e-72
 Identities = 142/309 (45%), Positives = 199/309 (64%), Gaps = 15/309 (4%)
 Frame = -1

Query: 1139 DNSDDDVDPARRLIKGRLSRSERSRYLTRRQEAEFSIYLKVGAMLEDTDSQC-------- 984
            +N D +V+P    +   +  S RS +L+R +E +  +YLK GA+LE+  +          
Sbjct: 100  ENIDQEVEPVAEPVSIPVGAS-RSGFLSRSEEVQLCLYLKEGAILENLGTSVEEKEMVSV 158

Query: 983  --TTTAGRTERRGKTDKACLRARECRERITLSYKRLVVSIATPYQGKGLSLQ----EGCI 822
              ++T    ++R   ++   R RE RE+IT  Y+RLVVSIAT YQGKGL+LQ    EG I
Sbjct: 159  LLSSTGKGKKKRSSANEILCRRREAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSI 218

Query: 821  GLLQGAQRFDHKKGYKLSTYVYWWXXXXXXXXXXXKSGIMRLPGGLRGVMAKVIDAKGLL 642
            GLL+GA+RFD ++GYKLSTYVYWW           KS +++LPG +  + AKV +A  +L
Sbjct: 219  GLLRGAERFDPERGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVL 278

Query: 641  QRKLGRPPSYEEIAESLNVNVSTVQLVCEKSGQPVSVDRSLNKEG-LTLKDILPGSDGAR 465
             RKL R PS EEIAE LN+NVS V+L  E+S  PVS+DR  +  G +TL++I+ G D  R
Sbjct: 279  TRKLRRAPSSEEIAEHLNINVSAVRLAVERSRSPVSLDRVASHYGRMTLQEIVKGPDETR 338

Query: 464  PDVIITRKLMLKNLDQLLTKLSERERRIIELHYGLSSERRRSCEEIGRLLKLSRERVRQI 285
            P+ ++ R+ M + + QLL  L+ RE R++ L++GL+ E   S EEIG+ LKLSRERVRQI
Sbjct: 339  PEEMVKREHMKEGIKQLLGTLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQI 398

Query: 284  HWIALTKLQ 258
            + IAL KL+
Sbjct: 399  NGIALGKLR 407


>gb|KFK25599.1| hypothetical protein AALP_AA8G135300 [Arabis alpina]
          Length = 413

 Score =  244 bits (622), Expect = 8e-72
 Identities = 135/286 (47%), Positives = 192/286 (67%), Gaps = 12/286 (4%)
 Frame = -1

Query: 1079 SERSRYLTRRQEAEFSIYLKVGAMLE-------DTDSQCTTTAGRTERRGKTDKACLRAR 921
            S RS +L+R +E +  +YLK GA LE       D +      + + +++   ++   R R
Sbjct: 112  SSRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEDKEMVSVLMSSKGKKKRSVNEILCRRR 171

Query: 920  ECRERITLSYKRLVVSIATPYQGKGLSLQ----EGCIGLLQGAQRFDHKKGYKLSTYVYW 753
            E RE+IT  Y+RLVVSIAT YQGKGL+LQ    EG IGLL+GA+RFD ++GYKLSTYVYW
Sbjct: 172  EAREKITRCYRRLVVSIATSYQGKGLNLQDLIQEGSIGLLRGAERFDPERGYKLSTYVYW 231

Query: 752  WXXXXXXXXXXXKSGIMRLPGGLRGVMAKVIDAKGLLQRKLGRPPSYEEIAESLNVNVST 573
            W           KS +++LPG +  + AKV +A  +L RKL RPPS EEIAE LN++VS 
Sbjct: 232  WIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRPPSCEEIAEHLNLHVSA 291

Query: 572  VQLVCEKSGQPVSVDRSLNKEG-LTLKDILPGSDGARPDVIITRKLMLKNLDQLLTKLSE 396
            V+L  E+   P+S+DR  ++ G +TL++I+ G +  RP+ ++ R+ M + ++QLL  L+ 
Sbjct: 292  VRLAVERGRSPISLDRVASQNGRMTLQEIVRGPEETRPEEMVKREHMKQEIEQLLGTLTA 351

Query: 395  RERRIIELHYGLSSERRRSCEEIGRLLKLSRERVRQIHWIALTKLQ 258
            RE R++ L++GL+ E   S EEIG+LLKLSRERVRQI+ +ALTKL+
Sbjct: 352  RESRVLGLYFGLNGETPMSFEEIGKLLKLSRERVRQINGLALTKLR 397


>dbj|GAY36935.1| hypothetical protein CUMW_025480 [Citrus unshiu]
          Length = 436

 Score =  244 bits (622), Expect = 1e-71
 Identities = 140/288 (48%), Positives = 184/288 (63%), Gaps = 18/288 (6%)
 Frame = -1

Query: 1064 YLTRRQEAEFSIYLKVGAMLEDT-------------DSQCTTTAGRTERRGKTDKACLRA 924
            YLT  +EAE    LK GA LE+                Q     G   +R K DK   + 
Sbjct: 139  YLTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAKATGM--KRSKVDKILCKE 196

Query: 923  RECRERITLSYKRLVVSIATPYQGKGLSL----QEGCIGLLQGAQRFDHKKGYKLSTYVY 756
            RE +ERI  SY+ LVVSIAT YQGKGLSL    QEG IGLL+GA+RF+ ++GYKLSTYVY
Sbjct: 197  RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 256

Query: 755  WWXXXXXXXXXXXKSGIMRLPGGLRGVMAKVIDAKGLLQRKLGRPPSYEEIAESLNVNVS 576
            WW           KS  +RLPG + G++AK+ +A  +L R+L R P+  EIAE LN++VS
Sbjct: 257  WWIKQAIIRTIANKSRTIRLPGSMSGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 316

Query: 575  TVQLVCEKSGQPVSVDRSLNKEG-LTLKDILPGSDGARPDVIITRKLMLKNLDQLLTKLS 399
            TV+L  E++  P+S+D ++   G +TL+DI+PG D   P+ ++ ++LM + L +LL  LS
Sbjct: 317  TVRLAIERTRHPISLDGAITDTGCMTLQDIIPGPDETMPEKMVQKQLMKQELKELLQTLS 376

Query: 398  ERERRIIELHYGLSSERRRSCEEIGRLLKLSRERVRQIHWIALTKLQE 255
            ERE  I+ LH+GL  +   SC+EIGRLL LSRERVRQI  IALTKLQ+
Sbjct: 377  EREADILRLHFGLDGQTPVSCKEIGRLLTLSRERVRQIRGIALTKLQQ 424


>ref|XP_002272444.2| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1
            [Vitis vinifera]
          Length = 442

 Score =  244 bits (622), Expect = 2e-71
 Identities = 142/291 (48%), Positives = 191/291 (65%), Gaps = 18/291 (6%)
 Frame = -1

Query: 1073 RSRYLTRRQEAEFSIYLKVGAMLE-------------DTDSQCTTTAGRTERRGKTDKAC 933
            RS  LT R+EAEF + LK  A LE              T +Q     G   +R   DK  
Sbjct: 142  RSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGI--KRSSLDKML 199

Query: 932  LRARECRERITLSYKRLVVSIATPYQGKGLSLQ----EGCIGLLQGAQRFDHKKGYKLST 765
               RE RERI  SY+RLVVSIA  YQGKGLSLQ    EG IGLL+GA+RFD  +GYKLST
Sbjct: 200  CNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLST 259

Query: 764  YVYWWXXXXXXXXXXXKSGIMRLPGGLRGVMAKVIDAKGLLQRKLGRPPSYEEIAESLNV 585
            YVYWW           KS I+RLPG +  ++AK+ +A+ +L R+L R P+Y+EIAE ++V
Sbjct: 260  YVYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDV 319

Query: 584  NVSTVQLVCEKSGQPVSVDRSLNKEG-LTLKDILPGSDGARPDVIITRKLMLKNLDQLLT 408
            NVSTV+LV E+S  P+SVD+++  +G +TL++I+PG D   P  ++ R+LM + +++ L 
Sbjct: 320  NVSTVRLVSERSRTPISVDQAVTSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALN 379

Query: 407  KLSERERRIIELHYGLSSERRRSCEEIGRLLKLSRERVRQIHWIALTKLQE 255
             L ERE  I+ L++G++ E   S EEIGRL+KLSRERVRQI+ IAL+KL++
Sbjct: 380  TLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLRQ 430


>ref|XP_006438958.1| RNA polymerase sigma factor sigD, chloroplastic [Citrus clementina]
 gb|ESR52198.1| hypothetical protein CICLE_v10033747mg [Citrus clementina]
          Length = 436

 Score =  242 bits (618), Expect = 6e-71
 Identities = 139/288 (48%), Positives = 184/288 (63%), Gaps = 18/288 (6%)
 Frame = -1

Query: 1064 YLTRRQEAEFSIYLKVGAMLEDT-------------DSQCTTTAGRTERRGKTDKACLRA 924
            YLT  +EAE    LK GA LE+                Q     G   ++ K DK   + 
Sbjct: 139  YLTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAKATGM--KQSKVDKILCKE 196

Query: 923  RECRERITLSYKRLVVSIATPYQGKGLSL----QEGCIGLLQGAQRFDHKKGYKLSTYVY 756
            RE +ERI  SY+ LVVSIAT YQGKGLSL    QEG IGLL+GA+RF+ ++GYKLSTYVY
Sbjct: 197  RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 256

Query: 755  WWXXXXXXXXXXXKSGIMRLPGGLRGVMAKVIDAKGLLQRKLGRPPSYEEIAESLNVNVS 576
            WW           KS  +RLPG + G++AK+ +A  +L R+L R P+  EIAE LN++VS
Sbjct: 257  WWIKQAIIRTIANKSRTIRLPGSMSGMVAKIAEANNVLSRRLRRMPTDNEIAEMLNIHVS 316

Query: 575  TVQLVCEKSGQPVSVDRSLNKEG-LTLKDILPGSDGARPDVIITRKLMLKNLDQLLTKLS 399
            TV+L  E++  P+S+D ++   G +TL+DI+PG D   P+ ++ ++LM + L +LL  LS
Sbjct: 317  TVRLAIERTRHPISLDGAITDTGCMTLQDIIPGPDETMPEKMVQKQLMKQELKELLQTLS 376

Query: 398  ERERRIIELHYGLSSERRRSCEEIGRLLKLSRERVRQIHWIALTKLQE 255
            ERE  I+ LH+GL  +   SC+EIGRLL LSRERVRQI  IALTKLQ+
Sbjct: 377  EREADILRLHFGLDGQTPVSCKEIGRLLTLSRERVRQIRGIALTKLQQ 424