BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon23_contig00004176
         (1161 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]         372   e-151
gb|KYP76811.1| Retrovirus-related Pol polyprotein from transposo...   363   e-148
gb|KYP76810.1| Retrovirus-related Pol polyprotein from transposo...   363   e-148
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]           359   e-145
ref|XP_017609491.1| PREDICTED: retrovirus-related Pol polyprotei...   354   e-145
gb|KYP31853.1| Retrovirus-related Pol polyprotein from transposo...   356   e-144
gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]      353   e-141
gb|PNX95528.1| putative gag/pol polyprotein [Trifolium pratense]      341   e-141
gb|KYP66486.1| Retrovirus-related Pol polyprotein from transposo...   352   e-140
ref|XP_022549646.1| uncharacterized protein LOC111201676, partia...   341   e-140
gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]            363   e-140
ref|XP_013746494.2| uncharacterized protein BNAC09G10640D [Brass...   340   e-139
gb|KYP50580.1| Retrovirus-related Pol polyprotein from transposo...   352   e-138
gb|PRQ60431.1| putative RNA-directed DNA polymerase [Rosa chinen...   362   e-137
dbj|GAU39612.1| hypothetical protein TSUD_276520 [Trifolium subt...   332   e-137
gb|KYP42630.1| Retrovirus-related Pol polyprotein from transposo...   325   e-136
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   353   e-135
gb|OMO51796.1| Reverse transcriptase, RNA-dependent DNA polymera...   331   e-134
gb|KYP63120.1| Retrovirus-related Pol polyprotein from transposo...   361   e-131
gb|PRQ29843.1| putative RNA-directed DNA polymerase [Rosa chinen...   358   e-126

>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score =  372 bits (955), Expect(2) = e-151
 Identities = 176/247 (71%), Positives = 206/247 (83%)
 Frame = +1

Query: 421  EEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVY 600
            EEIYMEQPEGF  KGKE  VCRLKKSLYGLKQAPRQWY+KF S M    Y + +SDHCV+
Sbjct: 932  EEIYMEQPEGFKVKGKEDYVCRLKKSLYGLKQAPRQWYKKFTSVMSKHGYKKTSSDHCVF 991

Query: 601  IKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDR 780
            + RY   DF+ILL+YVDDMLIVG++ S+I++LK+ELS SF MKD+G A+QILGM I RDR
Sbjct: 992  VNRYSDDDFVILLLYVDDMLIVGRNASRIQELKQELSKSFSMKDMGPAKQILGMKIIRDR 1051

Query: 781  KTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYAS 960
            + ++LW+SQE YIEKVLERF M +AKPVS+PL  HFKL  +QCPS+E EKEEM+ VPY+S
Sbjct: 1052 QNKKLWLSQEKYIEKVLERFHMNEAKPVSTPLDMHFKLCKKQCPSSEKEKEEMQRVPYSS 1111

Query: 961  AVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKASLCFGDGSH 1140
            AVGSLMYAMVCTRPDIAHAVGVVSRF+SNPG+EHW AVKWI+RYLRGT+  SLCFG G  
Sbjct: 1112 AVGSLMYAMVCTRPDIAHAVGVVSRFLSNPGREHWDAVKWILRYLRGTSSLSLCFGTGKP 1171

Query: 1141 RLVCYSD 1161
             L  Y+D
Sbjct: 1172 ILTGYTD 1178



 Score =  194 bits (492), Expect(2) = e-151
 Identities = 94/140 (67%), Positives = 115/140 (82%), Gaps = 2/140 (1%)
 Frame = +2

Query: 2    PAATPV--VRRSDRDRQPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEAMQDEMD 175
            P+  PV   RRSDR+R+PSTRYS  +Y+LLTD GEPESY E  +SDQK++W EAMQ+EM+
Sbjct: 774  PSQVPVDLPRRSDRERRPSTRYSPSQYVLLTDGGEPESYEEAMESDQKRQWFEAMQEEMN 833

Query: 176  SLEKNHTYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGVDFQEIF 355
            SL  N T++LVK P  ++ALKNRWV+R+K EE  + PR+KARLVVKGF+Q+KG+DF EIF
Sbjct: 834  SLYVNDTFELVKAPKNRKALKNRWVYRVKHEEGTSVPRFKARLVVKGFSQKKGIDFDEIF 893

Query: 356  SPVVKMSSIRVVLGLAASLD 415
            SPVVK SSIRVVLGLAA LD
Sbjct: 894  SPVVKFSSIRVVLGLAARLD 913


>gb|KYP76811.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  363 bits (932), Expect(2) = e-148
 Identities = 174/247 (70%), Positives = 203/247 (82%)
 Frame = +1

Query: 421  EEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVY 600
            EEIYMEQPEGF   GKE LVCRL KSLYGLKQAPRQWY+KF+SFM    + +  SDHCV+
Sbjct: 909  EEIYMEQPEGFKVPGKENLVCRLTKSLYGLKQAPRQWYKKFESFMAEHEFKKTESDHCVF 968

Query: 601  IKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDR 780
            IKRY SGDF+ILL+YVDDMLI GQD  KI  LKK+LS SF MKDLG A+QILGM I+RDR
Sbjct: 969  IKRYASGDFLILLLYVDDMLIFGQDRIKIAALKKDLSKSFAMKDLGPAKQILGMRITRDR 1028

Query: 781  KTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYAS 960
              R LW+SQE YIEKVLE+F+M K KPV++PLA HF+LSS+Q P++E E EEMK +PY+S
Sbjct: 1029 SKRLLWLSQERYIEKVLEQFNMDKCKPVNTPLAGHFRLSSKQSPTSEREMEEMKKIPYSS 1088

Query: 961  AVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKASLCFGDGSH 1140
             VGSLMYAM+CTRPDIA+AVGVVSRF+++PG EHW AVKWI+RYLRGT+K  LCFG G  
Sbjct: 1089 VVGSLMYAMICTRPDIAYAVGVVSRFLADPGNEHWLAVKWILRYLRGTSKRCLCFGKGKP 1148

Query: 1141 RLVCYSD 1161
             L  Y+D
Sbjct: 1149 VLQGYTD 1155



 Score =  193 bits (490), Expect(2) = e-148
 Identities = 88/134 (65%), Positives = 113/134 (84%)
 Frame = +2

Query: 14   PVVRRSDRDRQPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEAMQDEMDSLEKNH 193
            P  RRS R+R+PST Y+++EY++LTD GEP+SY+E      K+EW +AMQ+EM SL +NH
Sbjct: 757  PEPRRSSRERRPSTWYNTEEYVMLTDEGEPQSYKEAIKDIHKEEWRKAMQEEMQSLHENH 816

Query: 194  TYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGVDFQEIFSPVVKM 373
            TY+LV+LP G+RALKN+WV+R+K E+N  KPRYKARLVVKGF Q KG+DF+EIFSPVVKM
Sbjct: 817  TYELVELPKGRRALKNKWVYRIKTEDNNTKPRYKARLVVKGFGQEKGIDFEEIFSPVVKM 876

Query: 374  SSIRVVLGLAASLD 415
            SSIRV+LG+AA+ D
Sbjct: 877  SSIRVILGIAATQD 890


>gb|KYP76810.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  363 bits (932), Expect(2) = e-148
 Identities = 174/247 (70%), Positives = 203/247 (82%)
 Frame = +1

Query: 421  EEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVY 600
            EEIYMEQPEGF   GKE LVCRL KSLYGLKQAPRQWY+KF+SFM    + +  SDHCV+
Sbjct: 909  EEIYMEQPEGFKVPGKENLVCRLTKSLYGLKQAPRQWYKKFESFMAEHEFKKTESDHCVF 968

Query: 601  IKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDR 780
            IKRY SGDF+ILL+YVDDMLI GQD  KI  LKK+LS SF MKDLG A+QILGM I+RDR
Sbjct: 969  IKRYASGDFLILLLYVDDMLIFGQDRIKIAALKKDLSKSFAMKDLGPAKQILGMRITRDR 1028

Query: 781  KTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYAS 960
              R LW+SQE YIEKVLE+F+M K KPV++PLA HF+LSS+Q P++E E EEMK +PY+S
Sbjct: 1029 SKRLLWLSQERYIEKVLEQFNMDKCKPVNTPLAGHFRLSSKQSPTSEREMEEMKKIPYSS 1088

Query: 961  AVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKASLCFGDGSH 1140
             VGSLMYAM+CTRPDIA+AVGVVSRF+++PG EHW AVKWI+RYLRGT+K  LCFG G  
Sbjct: 1089 VVGSLMYAMICTRPDIAYAVGVVSRFLADPGNEHWLAVKWILRYLRGTSKRCLCFGKGKP 1148

Query: 1141 RLVCYSD 1161
             L  Y+D
Sbjct: 1149 VLQGYTD 1155



 Score =  193 bits (490), Expect(2) = e-148
 Identities = 88/134 (65%), Positives = 113/134 (84%)
 Frame = +2

Query: 14   PVVRRSDRDRQPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEAMQDEMDSLEKNH 193
            P  RRS R+R+PST Y+++EY++LTD GEP+SY+E      K+EW +AMQ+EM SL +NH
Sbjct: 757  PEPRRSSRERRPSTWYNTEEYVMLTDEGEPQSYKEAIKDIHKEEWRKAMQEEMQSLHENH 816

Query: 194  TYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGVDFQEIFSPVVKM 373
            TY+LV+LP G+RALKN+WV+R+K E+N  KPRYKARLVVKGF Q KG+DF+EIFSPVVKM
Sbjct: 817  TYELVELPKGRRALKNKWVYRIKTEDNNTKPRYKARLVVKGFGQEKGIDFEEIFSPVVKM 876

Query: 374  SSIRVVLGLAASLD 415
            SSIRV+LG+AA+ D
Sbjct: 877  SSIRVILGIAATQD 890


>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
          Length = 1338

 Score =  359 bits (922), Expect(2) = e-145
 Identities = 168/247 (68%), Positives = 208/247 (84%)
 Frame = +1

Query: 421  EEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVY 600
            EEIYMEQP+GF +KGKE  VCRL+KSLYGLKQAPRQWY+KF+S M    Y +  SDHCV+
Sbjct: 935  EEIYMEQPDGFQQKGKEDYVCRLRKSLYGLKQAPRQWYKKFESVMGQHGYKKTTSDHCVF 994

Query: 601  IKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDR 780
             +++   DFIILL+YVDDMLIVG+++S+I  LK++LS  F MKDLG A+QILGM I RDR
Sbjct: 995  AQKFSDDDFIILLLYVDDMLIVGRNVSRINSLKEQLSKFFAMKDLGPAKQILGMRIMRDR 1054

Query: 781  KTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYAS 960
            + ++LW+SQE YIEKVL+RF+M+K K VS PLA+HF+LS++Q PST+ E+ +M+ +PYAS
Sbjct: 1055 EAKKLWLSQEKYIEKVLQRFNMEKTKAVSCPLANHFRLSTKQSPSTDDERRKMERIPYAS 1114

Query: 961  AVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKASLCFGDGSH 1140
            AVGSLMYAMVCTRPDIAHAVGVVSRF+SNPGKEHW AVKWI+RYLRGT+K  LCFG+ + 
Sbjct: 1115 AVGSLMYAMVCTRPDIAHAVGVVSRFLSNPGKEHWDAVKWILRYLRGTSKLCLCFGEDNP 1174

Query: 1141 RLVCYSD 1161
             LV Y+D
Sbjct: 1175 VLVGYTD 1181



 Score =  187 bits (474), Expect(2) = e-145
 Identities = 89/134 (66%), Positives = 110/134 (82%)
 Frame = +2

Query: 14   PVVRRSDRDRQPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEAMQDEMDSLEKNH 193
            P   RS R  Q STRYS  EY+LLTD GEP+S+ E  D + K++W+EAMQDE+ SL +N 
Sbjct: 783  PYHTRSGRVVQQSTRYSPHEYVLLTDGGEPDSFEEAIDDEHKEKWIEAMQDEIKSLHENK 842

Query: 194  TYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGVDFQEIFSPVVKM 373
            T++LVKLP GKRALKN+WVF++K +E+ + PR+KARLVVKGFNQRKG+DF EIFSPVVKM
Sbjct: 843  TFELVKLPKGKRALKNKWVFKMKHDEHNSLPRFKARLVVKGFNQRKGIDFDEIFSPVVKM 902

Query: 374  SSIRVVLGLAASLD 415
            +SIR VLGLAASL+
Sbjct: 903  TSIRTVLGLAASLN 916


>ref|XP_017609491.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 [Gossypium arboreum]
          Length = 1184

 Score =  354 bits (909), Expect(2) = e-145
 Identities = 167/247 (67%), Positives = 205/247 (82%)
 Frame = +1

Query: 421  EEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVY 600
            +E+YMEQPEGF  + KE  VCRLKKSLYGLKQAPRQWY+KF+S M  Q+Y +  SDHCV+
Sbjct: 788  DELYMEQPEGFVAQRKEDYVCRLKKSLYGLKQAPRQWYKKFESVMGEQSYKKTTSDHCVF 847

Query: 601  IKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDR 780
            +K++   DFIILL+YVDDMLIVGQ+ S+IEKLK+ELS SF MKDLG A+QILG+ ++RDR
Sbjct: 848  VKKFSGDDFIILLLYVDDMLIVGQNASRIEKLKQELSKSFAMKDLGPAKQILGIRLTRDR 907

Query: 781  KTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYAS 960
            K ++LW+SQE YIEKVL++FSM KAK V++P A HF+LS +  PSTE EKEEM+ +PY+S
Sbjct: 908  KAKKLWLSQERYIEKVLQKFSMDKAKAVNTPFAMHFRLSVKHSPSTEKEKEEMQKIPYSS 967

Query: 961  AVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKASLCFGDGSH 1140
            AVGSLMYAMVCTRPD+A+AVG VSRF+SN G+EHW AVKWIMRYLRGT+   LCFG+   
Sbjct: 968  AVGSLMYAMVCTRPDLAYAVGTVSRFLSNLGREHWNAVKWIMRYLRGTSNMKLCFGNEKP 1027

Query: 1141 RLVCYSD 1161
              V Y+D
Sbjct: 1028 VTVGYTD 1034



 Score =  191 bits (484), Expect(2) = e-145
 Identities = 92/140 (65%), Positives = 111/140 (79%), Gaps = 2/140 (1%)
 Frame = +2

Query: 2    PAATPVV--RRSDRDRQPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEAMQDEMD 175
            P A P V  RRS RDR+ S +YS  EY+LLTD GEP  Y E  +S+ K +W+EAM+D++ 
Sbjct: 630  PIAPPAVPLRRSSRDRRSSVKYSPDEYVLLTDGGEPGCYEEAMESECKDQWVEAMKDKLQ 689

Query: 176  SLEKNHTYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGVDFQEIF 355
            SL +NHT++LVKLP GKRALKNRWV+RLKQEE  + PRYKARLVVKG+ Q+KGVDF+EIF
Sbjct: 690  SLHENHTFELVKLPKGKRALKNRWVYRLKQEEKSSSPRYKARLVVKGYTQKKGVDFEEIF 749

Query: 356  SPVVKMSSIRVVLGLAASLD 415
            SPVVKMSSIR +L LAA  D
Sbjct: 750  SPVVKMSSIRTILSLAACYD 769


>gb|KYP31853.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1314

 Score =  356 bits (914), Expect(2) = e-144
 Identities = 174/247 (70%), Positives = 200/247 (80%)
 Frame = +1

Query: 421  EEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVY 600
            EEIYMEQPEGFAE GKE LVCRLKKSLYGLKQAPRQWY+KFD FM    + + ++D CV+
Sbjct: 919  EEIYMEQPEGFAEPGKEHLVCRLKKSLYGLKQAPRQWYKKFDLFMAQHNFKKTSADQCVF 978

Query: 601  IKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDR 780
            +K Y +G+ IILL+YVDDMLIVG+D +KI  LKK LS SF MKDLGS ++ILGM I RDR
Sbjct: 979  VKNYENGESIILLLYVDDMLIVGKDKTKIAALKKALSKSFAMKDLGSVKKILGMKIIRDR 1038

Query: 781  KTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYAS 960
              R LW+SQE YI+KVLERF+M  AK V  PL  H KLS +QCP  E EKEEM  VPY+S
Sbjct: 1039 SKRMLWMSQEDYIKKVLERFNMHNAKSVHVPLPGHLKLSKKQCPVNE-EKEEMSKVPYSS 1097

Query: 961  AVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKASLCFGDGSH 1140
            AVGSLMYAMVCTRPDIA+AVGVVSRF+SNPGKEHW AVKWI+RYL+GT K+ LCFG+G+ 
Sbjct: 1098 AVGSLMYAMVCTRPDIAYAVGVVSRFLSNPGKEHWNAVKWILRYLKGTAKSCLCFGNGNL 1157

Query: 1141 RLVCYSD 1161
             L  YSD
Sbjct: 1158 MLTGYSD 1164



 Score =  186 bits (471), Expect(2) = e-144
 Identities = 86/134 (64%), Positives = 112/134 (83%)
 Frame = +2

Query: 14   PVVRRSDRDRQPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEAMQDEMDSLEKNH 193
            P VRRS R RQPS RY S +Y+ LTD GEP+S+ E  + + K++WL+AM++E+ SL++N 
Sbjct: 767  PEVRRSMRVRQPSKRYFSDDYVNLTDEGEPQSFIEAIEMNDKEKWLQAMEEELQSLKENE 826

Query: 194  TYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGVDFQEIFSPVVKM 373
            TY+LV+LP G++ALKN+WVF+LK EEN  KPRYKAR+VVKG NQ+KG+DF+EIFSPVVKM
Sbjct: 827  TYELVELPQGRKALKNKWVFKLKTEENNTKPRYKARIVVKGCNQKKGIDFEEIFSPVVKM 886

Query: 374  SSIRVVLGLAASLD 415
            +SIR +LGLAA LD
Sbjct: 887  TSIRAILGLAAKLD 900


>gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]
          Length = 1556

 Score =  353 bits (905), Expect(2) = e-141
 Identities = 164/247 (66%), Positives = 207/247 (83%)
 Frame = +1

Query: 421  EEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVY 600
            EEIYM+QP+GF  +GKE  VCRL+KSLYGLKQAPRQWY+KF+S M  Q Y +  SDHCV+
Sbjct: 878  EEIYMKQPDGFLVEGKEDHVCRLRKSLYGLKQAPRQWYKKFESVMCEQGYKKTTSDHCVF 937

Query: 601  IKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDR 780
            +K++ + DFIILL+YVDD+LIVG+D+S I +LKK+LS SF MKD+G+A+QILG+ I RDR
Sbjct: 938  VKKFANDDFIILLLYVDDILIVGKDISMINRLKKQLSESFAMKDMGAAKQILGIRIMRDR 997

Query: 781  KTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYAS 960
            + ++LW+SQE+Y+++VL+RF M+ AK VS+PLA+HFKLS++Q PS E EK +M+ +PYAS
Sbjct: 998  QEKKLWLSQENYVKRVLQRFQMENAKVVSTPLATHFKLSTKQSPSYEYEKSDMQRIPYAS 1057

Query: 961  AVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKASLCFGDGSH 1140
            AVGSLMYAMVCTRPDIAH VG VSRF+SNPG+EHW AVKWI+RYLRGTT   LCFG    
Sbjct: 1058 AVGSLMYAMVCTRPDIAHVVGTVSRFMSNPGREHWNAVKWILRYLRGTTCLRLCFGGDKP 1117

Query: 1141 RLVCYSD 1161
             LV Y+D
Sbjct: 1118 TLVGYTD 1124



 Score =  179 bits (455), Expect(2) = e-141
 Identities = 83/120 (69%), Positives = 100/120 (83%)
 Frame = +2

Query: 56   RYSSQEYILLTDAGEPESYREVEDSDQKQEWLEAMQDEMDSLEKNHTYDLVKLPNGKRAL 235
            RY S +Y+ LTD GEPE Y E  +S++K++WL+AMQDEM SL  NHT+DLVKLP  K+AL
Sbjct: 740  RYPSDDYVTLTDEGEPECYLEAMESEEKKKWLDAMQDEMKSLHDNHTFDLVKLPKDKKAL 799

Query: 236  KNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGVDFQEIFSPVVKMSSIRVVLGLAASLD 415
            +NRW++R+KQE N   PRYKARLVVKGF QRKG+DF EIFSPVVKMSSIR+VL LAA+LD
Sbjct: 800  ENRWIYRVKQESNSTSPRYKARLVVKGFRQRKGIDFNEIFSPVVKMSSIRIVLSLAATLD 859


>gb|PNX95528.1| putative gag/pol polyprotein [Trifolium pratense]
          Length = 1339

 Score =  341 bits (874), Expect(2) = e-141
 Identities = 165/248 (66%), Positives = 197/248 (79%)
 Frame = +1

Query: 418  HEEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCV 597
            HEEIYMEQP+GF EKGKE  VC+L KSLYGLKQAPRQWY+KF+S M    Y    +DHCV
Sbjct: 942  HEEIYMEQPDGFREKGKEDYVCKLVKSLYGLKQAPRQWYQKFNSVMIEHGYKMTKADHCV 1001

Query: 598  YIKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRD 777
            + +     DFIILL+YVDDMLIVG+++S+I +LK  LS SF MKDLG+AR+ILG+ I RD
Sbjct: 1002 FFRNLSEDDFIILLLYVDDMLIVGKNISRIRELKNTLSESFSMKDLGAARKILGIEIVRD 1061

Query: 778  RKTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYA 957
            R  ++L++SQE Y+EKVL RFSM KAK VS PLASHFKLS + CPST+ EK  MK++PY+
Sbjct: 1062 RNEKKLYLSQEKYVEKVLRRFSMDKAKAVSIPLASHFKLSHKLCPSTDEEKLRMKSIPYS 1121

Query: 958  SAVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKASLCFGDGS 1137
            SAVGSLMYAMVCTRPDIAHAVGVVSR++SNPGK HW AVKW+MRYLRG++   L  G   
Sbjct: 1122 SAVGSLMYAMVCTRPDIAHAVGVVSRYLSNPGKVHWEAVKWVMRYLRGSSNLKLTLGCKK 1181

Query: 1138 HRLVCYSD 1161
              LV Y+D
Sbjct: 1182 PMLVGYTD 1189



 Score =  191 bits (484), Expect(2) = e-141
 Identities = 89/136 (65%), Positives = 116/136 (85%)
 Frame = +2

Query: 8    ATPVVRRSDRDRQPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEAMQDEMDSLEK 187
            A+  +RRS RD++PS RY S EY+ LTD GEPE+++EV + + K+EW++AM+DEM SL +
Sbjct: 789  ASNELRRSTRDKRPSVRYPSNEYVFLTDGGEPENFKEVLEDENKKEWMDAMEDEMQSLRE 848

Query: 188  NHTYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGVDFQEIFSPVV 367
            N+T++LVKLP GKRALKNRWV+R+KQ+E  ++ RYKARLVVKGF QR+G+DF EIF+PVV
Sbjct: 849  NNTFELVKLPKGKRALKNRWVYRIKQDECTSQRRYKARLVVKGFKQREGIDFGEIFAPVV 908

Query: 368  KMSSIRVVLGLAASLD 415
            KM SIR+VLGLAASLD
Sbjct: 909  KMQSIRMVLGLAASLD 924


>gb|KYP66486.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1321

 Score =  352 bits (902), Expect(2) = e-140
 Identities = 168/247 (68%), Positives = 202/247 (81%)
 Frame = +1

Query: 421  EEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVY 600
            EEIYMEQPEGF  KGKE +VC+LKKSLYGLKQAPRQWY+KFDSF+K+Q + R  +D CVY
Sbjct: 931  EEIYMEQPEGFEVKGKEDMVCKLKKSLYGLKQAPRQWYKKFDSFIKSQGFKRTDADPCVY 990

Query: 601  IKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDR 780
            I RYP+G F+ILL+YVDDMLIVGQD+  I+ LK ELS +F+MKD+G+A+ ILGM I RDR
Sbjct: 991  INRYPNGKFLILLLYVDDMLIVGQDVQMIKNLKVELSKAFDMKDMGAAKHILGMDIIRDR 1050

Query: 781  KTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYAS 960
            K  +LW+SQE YIE+VLERF+M+ AKPV +PL  HFKLS + CP+    +E+M  +PY+S
Sbjct: 1051 KAGKLWLSQERYIERVLERFNMKNAKPVITPLVGHFKLSKKSCPTI---REKMSTIPYSS 1107

Query: 961  AVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKASLCFGDGSH 1140
            AVGSLMYAMVCTRPDIAHAVGVVSR++SNPGK HW AVKWI+RYLRGT+K  L FG    
Sbjct: 1108 AVGSLMYAMVCTRPDIAHAVGVVSRYLSNPGKTHWEAVKWILRYLRGTSKLCLRFGGAKP 1167

Query: 1141 RLVCYSD 1161
             L  Y+D
Sbjct: 1168 ILEGYTD 1174



 Score =  178 bits (451), Expect(2) = e-140
 Identities = 84/134 (62%), Positives = 112/134 (83%)
 Frame = +2

Query: 14   PVVRRSDRDRQPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEAMQDEMDSLEKNH 193
            P +RRS R+RQPST+Y S EYIL+ D GEPES++EV+    K  W++AMQ+EMDSL++N+
Sbjct: 780  PQIRRSTRERQPSTKYPSSEYILIADEGEPESFQEVQSHKDKGCWVKAMQEEMDSLKRNN 839

Query: 194  TYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGVDFQEIFSPVVKM 373
            TY+LV+LP G+R LKN+WVF+LK ++     R+KARLVVKGF+Q++G+DF+EIFSPVVKM
Sbjct: 840  TYELVQLPKGRRVLKNKWVFKLK-KDGDKLVRHKARLVVKGFSQKQGIDFEEIFSPVVKM 898

Query: 374  SSIRVVLGLAASLD 415
             SIRV+LGL AS+D
Sbjct: 899  CSIRVILGLVASMD 912


>ref|XP_022549646.1| uncharacterized protein LOC111201676, partial [Brassica napus]
          Length = 2325

 Score =  341 bits (874), Expect(2) = e-140
 Identities = 166/247 (67%), Positives = 197/247 (79%)
 Frame = +1

Query: 421  EEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVY 600
            EEIYMEQPEG+ +KGKE LVCRLKKSLYGLKQAPRQWY KF S M    Y    SDHCV+
Sbjct: 773  EEIYMEQPEGYVQKGKENLVCRLKKSLYGLKQAPRQWYMKFKSVMGEHGYAETDSDHCVF 832

Query: 601  IKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDR 780
            +K +   DFIILL+YVDDMLIVG++M KI++LK++LS SF MKD+G A+QILGM I RDR
Sbjct: 833  VKVFGEDDFIILLLYVDDMLIVGRNMDKIKELKEQLSESFAMKDMGPAKQILGMRIIRDR 892

Query: 781  KTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYAS 960
              + + +SQE YIEKVL+RF M K+K +S+PLA H +LSSQQ P T  EKE+M  VPYAS
Sbjct: 893  GEKLIHLSQEKYIEKVLKRFHMDKSKVLSTPLAPHLRLSSQQSPKTYAEKEDMAKVPYAS 952

Query: 961  AVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKASLCFGDGSH 1140
            AVGSLMYAMVCTRPD+A+AVGVVSRF+SNPG+EHW AVKWI+RYLRGT+   + FG    
Sbjct: 953  AVGSLMYAMVCTRPDLAYAVGVVSRFLSNPGREHWNAVKWILRYLRGTSDLKITFGGKKS 1012

Query: 1141 RLVCYSD 1161
             LV Y+D
Sbjct: 1013 LLVSYTD 1019



 Score =  187 bits (474), Expect(2) = e-140
 Identities = 86/133 (64%), Positives = 110/133 (82%)
 Frame = +2

Query: 17   VVRRSDRDRQPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEAMQDEMDSLEKNHT 196
            +VRRS+R  +PSTRY   EY+LLTD GEPESY E  + + K +W  AM +EMDS E+NHT
Sbjct: 622  IVRRSERGLKPSTRYDPSEYVLLTDGGEPESYDEALEDEHKDKWFGAMDEEMDSFEENHT 681

Query: 197  YDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGVDFQEIFSPVVKMS 376
            ++LV+LP GK+AL N+WV+R+K E++   PR+KARLVVKG++Q+KG+D+ EIFSPVVKMS
Sbjct: 682  FELVELPKGKKALLNKWVYRIKHEDDNLPPRHKARLVVKGYSQKKGIDYDEIFSPVVKMS 741

Query: 377  SIRVVLGLAASLD 415
            SIRVVLGLAASLD
Sbjct: 742  SIRVVLGLAASLD 754



 Score =  340 bits (871), Expect(2) = e-139
 Identities = 166/247 (67%), Positives = 197/247 (79%)
 Frame = +1

Query: 421  EEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVY 600
            EEIYMEQPEG+ +KGKE LVCRLKKSLYGLKQAPRQWY KF S M    Y    SDHCV+
Sbjct: 1929 EEIYMEQPEGYVQKGKENLVCRLKKSLYGLKQAPRQWYMKFKSVMGEHGYAETDSDHCVF 1988

Query: 601  IKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDR 780
            +K +   DFIILL+YVDDMLIVG++M KI++LK++LS SF MKD+G A+QILGM I RDR
Sbjct: 1989 VKVFGEDDFIILLLYVDDMLIVGRNMDKIKELKEQLSESFAMKDMGPAKQILGMRIIRDR 2048

Query: 781  KTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYAS 960
              + + +SQE YIEKVL+RF M K+K +S+PLA H +LSSQQ P T  EKE+M  VPYAS
Sbjct: 2049 GEKLIHLSQEKYIEKVLKRFHMDKSKVLSTPLAPHLRLSSQQSPKTYAEKEDMAKVPYAS 2108

Query: 961  AVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKASLCFGDGSH 1140
            AVGSLMYAMVCTRPD+A+AVGVVSRFISNPG+EHW AVKWI+RYLRGT+   + FG    
Sbjct: 2109 AVGSLMYAMVCTRPDLAYAVGVVSRFISNPGREHWNAVKWILRYLRGTSDLKITFGGKKP 2168

Query: 1141 RLVCYSD 1161
             LV ++D
Sbjct: 2169 LLVSFTD 2175



 Score =  187 bits (474), Expect(2) = e-139
 Identities = 86/133 (64%), Positives = 110/133 (82%)
 Frame = +2

Query: 17   VVRRSDRDRQPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEAMQDEMDSLEKNHT 196
            +VRRS+R  +PSTRY   EY+LLTD GEPESY E  + + K +W  AM +EMDS E+NHT
Sbjct: 1778 IVRRSERGLKPSTRYDPSEYVLLTDGGEPESYDEALEDEHKDKWFGAMDEEMDSFEENHT 1837

Query: 197  YDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGVDFQEIFSPVVKMS 376
            ++LV+LP GK+AL N+WV+R+K E++   PR+KARLVVKG++Q+KG+D+ EIFSPVVKMS
Sbjct: 1838 FELVELPKGKKALLNKWVYRIKHEDDNLPPRHKARLVVKGYSQKKGIDYDEIFSPVVKMS 1897

Query: 377  SIRVVLGLAASLD 415
            SIRVVLGLAASLD
Sbjct: 1898 SIRVVLGLAASLD 1910


>gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]
          Length = 687

 Score =  363 bits (931), Expect(2) = e-140
 Identities = 170/248 (68%), Positives = 205/248 (82%)
 Frame = +1

Query: 418  HEEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCV 597
            HEEIYMEQPEGF  KGKE  VC+LKKSLYGLKQAPRQWY KFDSFM N  Y R  +D CV
Sbjct: 293  HEEIYMEQPEGFEVKGKENFVCKLKKSLYGLKQAPRQWYHKFDSFMSNNEYKRTTADPCV 352

Query: 598  YIKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRD 777
            Y +++  G+FIIL +YVDDMLIVGQD+  I +LK++LS SF+MKDLG A+QILGM I+RD
Sbjct: 353  YFRKFSEGNFIILCLYVDDMLIVGQDVEMICRLKEDLSKSFDMKDLGPAKQILGMEIARD 412

Query: 778  RKTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYA 957
            RK  +LW+SQE+YIE+VLERF+M+ AKPV++PLA+HFKLS + CP+TE EKE M  +PY+
Sbjct: 413  RKAGKLWLSQENYIERVLERFNMKNAKPVNTPLAAHFKLSKRCCPTTEKEKESMSHIPYS 472

Query: 958  SAVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKASLCFGDGS 1137
            S VGSLMYAMVCTRPDIAHAVG+VSR+++NP K HW AVKWI+RYLRGT+  SLCFG G 
Sbjct: 473  SVVGSLMYAMVCTRPDIAHAVGLVSRYLANPSKVHWEAVKWILRYLRGTSNLSLCFGGGE 532

Query: 1138 HRLVCYSD 1161
              L  ++D
Sbjct: 533  PILEGFTD 540



 Score =  164 bits (416), Expect(2) = e-140
 Identities = 82/134 (61%), Positives = 103/134 (76%)
 Frame = +2

Query: 14  PVVRRSDRDRQPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEAMQDEMDSLEKNH 193
           P +R+S R RQPS  Y S EYIL+TD GEPES +EV     K  WL+AMQ++MDSL+KN 
Sbjct: 143 PTLRKSTRVRQPSRLYPSSEYILITDEGEPESLQEVLSHSDKDHWLKAMQEDMDSLKKNE 202

Query: 194 TYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGVDFQEIFSPVVKM 373
           TYDLVK P GK+ LKNRW+F+ K++ N    R KARLVVKG +Q+KG+DF EIF+PVVKM
Sbjct: 203 TYDLVKPPKGKKVLKNRWLFKNKKDGNKLVKR-KARLVVKGCHQKKGIDFDEIFAPVVKM 261

Query: 374 SSIRVVLGLAASLD 415
           +SIR++LGLA  L+
Sbjct: 262 TSIRMILGLATCLN 275


>ref|XP_013746494.2| uncharacterized protein BNAC09G10640D [Brassica napus]
          Length = 1347

 Score =  340 bits (871), Expect(2) = e-139
 Identities = 165/247 (66%), Positives = 197/247 (79%)
 Frame = +1

Query: 421  EEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVY 600
            EEIYMEQPEG+ +KGKE LVCRLKKSLYGLKQAPRQWY KF S M    Y    SDHCV+
Sbjct: 951  EEIYMEQPEGYVQKGKENLVCRLKKSLYGLKQAPRQWYMKFKSVMGEHGYAETDSDHCVF 1010

Query: 601  IKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDR 780
            +K +   DFIILL+YVDDMLIVG++M +I++LK++LS SF MKD+G A+QILGM I RDR
Sbjct: 1011 VKVFGEDDFIILLLYVDDMLIVGRNMDRIKELKEQLSESFAMKDMGPAKQILGMRIIRDR 1070

Query: 781  KTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYAS 960
              + + +SQE YIEKVL+RF M K+K +S+PLA H +LSSQQ P T  EKE+M  VPYAS
Sbjct: 1071 GEKLIHLSQEKYIEKVLKRFHMDKSKVLSTPLAPHLRLSSQQSPKTYAEKEDMAKVPYAS 1130

Query: 961  AVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKASLCFGDGSH 1140
            AVGSLMYAMVCTRPD+A+AVGVVSRF+SNPG+EHW AVKWI+RYLRGT+   + FG    
Sbjct: 1131 AVGSLMYAMVCTRPDLAYAVGVVSRFLSNPGREHWNAVKWILRYLRGTSNLKITFGGKKP 1190

Query: 1141 RLVCYSD 1161
             LV Y+D
Sbjct: 1191 LLVSYTD 1197



 Score =  187 bits (474), Expect(2) = e-139
 Identities = 86/133 (64%), Positives = 110/133 (82%)
 Frame = +2

Query: 17   VVRRSDRDRQPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEAMQDEMDSLEKNHT 196
            +VRRS+R  +PSTRY   EY+LLTD GEPESY E  + + K +W  AM +EMDS E+NHT
Sbjct: 800  IVRRSERGLKPSTRYDPSEYVLLTDGGEPESYDEALEDEHKDKWFGAMDEEMDSFEENHT 859

Query: 197  YDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGVDFQEIFSPVVKMS 376
            ++LV+LP GK+AL N+WV+R+K E++   PR+KARLVVKG++Q+KG+D+ EIFSPVVKMS
Sbjct: 860  FELVELPKGKKALLNKWVYRIKHEDDNLPPRHKARLVVKGYSQKKGIDYDEIFSPVVKMS 919

Query: 377  SIRVVLGLAASLD 415
            SIRVVLGLAASLD
Sbjct: 920  SIRVVLGLAASLD 932


>gb|KYP50580.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 478

 Score =  352 bits (904), Expect(2) = e-138
 Identities = 166/247 (67%), Positives = 203/247 (82%)
 Frame = +1

Query: 421  EEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVY 600
            EEIYM+QP+GF  +GKE  VCRL+KSLYGLKQAPRQWY+KF+S M  Q Y +  SDHCV+
Sbjct: 131  EEIYMKQPDGFLIEGKEDYVCRLRKSLYGLKQAPRQWYKKFESVMCEQDYKKTTSDHCVF 190

Query: 601  IKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDR 780
            ++++   DFIILL+YVDDMLIVG+D+SKI++LKK+L  SF MKD+G+A++ILG+SI RDR
Sbjct: 191  VRKFSDDDFIILLLYVDDMLIVGKDVSKIDRLKKQLGESFSMKDMGAAKKILGISIIRDR 250

Query: 781  KTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYAS 960
            K ++LW+SQE YI+ VL+RF M+  K VS+PLA+HFKLS +QCPS E+EK  M  VPYA 
Sbjct: 251  KDKKLWLSQEHYIQNVLQRFHMENVKAVSTPLAAHFKLSVKQCPSNEVEKINMSRVPYAY 310

Query: 961  AVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKASLCFGDGSH 1140
            AVGSLMYAMVCTRPDIAHAVG VSRF+SNPG+EHW AVKWI+RYLRGT+   L FG    
Sbjct: 311  AVGSLMYAMVCTRPDIAHAVGTVSRFLSNPGREHWNAVKWILRYLRGTSGLKLYFGGDKP 370

Query: 1141 RLVCYSD 1161
             LV YSD
Sbjct: 371  TLVGYSD 377



 Score =  170 bits (430), Expect(2) = e-138
 Identities = 80/112 (71%), Positives = 93/112 (83%)
 Frame = +2

Query: 80  LLTDAGEPESYREVEDSDQKQEWLEAMQDEMDSLEKNHTYDLVKLPNGKRALKNRWVFRL 259
           +LTD GEPE Y E  +S++KQ+WL+AMQDEM SL  NHTYDLVKLP GKRAL+NRW+F++
Sbjct: 1   MLTDEGEPECYEEAIESEEKQKWLDAMQDEMKSLHDNHTYDLVKLPKGKRALENRWIFKV 60

Query: 260 KQEENGAKPRYKARLVVKGFNQRKGVDFQEIFSPVVKMSSIRVVLGLAASLD 415
           KQE N   P YKARLVVKGF QRKGVDF EIFSPVV+MSSIR +L LA +LD
Sbjct: 61  KQESNSTSPIYKARLVVKGFRQRKGVDFNEIFSPVVRMSSIRTMLSLATTLD 112


>gb|PRQ60431.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1340

 Score =  362 bits (928), Expect(2) = e-137
 Identities = 167/247 (67%), Positives = 209/247 (84%)
 Frame = +1

Query: 421  EEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVY 600
            EEIYMEQPEGF  +GK+ +VC+LKKSLYGLKQAPRQWY+KFDSFM    Y R  +D CVY
Sbjct: 944  EEIYMEQPEGFEVEGKQHMVCKLKKSLYGLKQAPRQWYKKFDSFMVGHGYKRTDADPCVY 1003

Query: 601  IKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDR 780
            ++R+  G+FIILL+YVDDMLIVG+D+S I KLK +LS SF+MKDLG A+QILGM I+RDR
Sbjct: 1004 LQRFTGGNFIILLLYVDDMLIVGKDVSMIHKLKADLSKSFDMKDLGPAKQILGMEITRDR 1063

Query: 781  KTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYAS 960
            + ++LW+SQE Y+E+VLERF+M++AK VSSPL +HFKLS   CP+T++EK++M  +PY+S
Sbjct: 1064 QAKKLWLSQERYVERVLERFNMKEAKSVSSPLGNHFKLSRLSCPTTQVEKDKMAGIPYSS 1123

Query: 961  AVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKASLCFGDGSH 1140
            AVGSLMYAMVCTRPDIAHAVGVVSR++SNPG+EHW AVKWI++YLRGT+K  LCFG    
Sbjct: 1124 AVGSLMYAMVCTRPDIAHAVGVVSRYLSNPGREHWEAVKWILKYLRGTSKLCLCFGGSEP 1183

Query: 1141 RLVCYSD 1161
             L  ++D
Sbjct: 1184 ILEGFTD 1190



 Score =  158 bits (400), Expect(2) = e-137
 Identities = 77/146 (52%), Positives = 108/146 (73%), Gaps = 14/146 (9%)
 Frame = +2

Query: 20   VRRSDRDRQPSTRYSSQEYIL--------------LTDAGEPESYREVEDSDQKQEWLEA 157
            VRRS+R+ +P+T+Y S +YIL              LT+ GEPE + E +      +W+ A
Sbjct: 780  VRRSNREPKPNTKYHSSQYILVTSDGDDPYSRYILLTNDGEPECFEEAKTHADCDKWMLA 839

Query: 158  MQDEMDSLEKNHTYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGV 337
            M+ EM+SL KN TY+LV+LP G++ALKN+WVF+LK++EN    ++KARLVVKGF Q++G+
Sbjct: 840  MKSEMESLLKNDTYELVELPKGRKALKNKWVFKLKRDENEQLTKFKARLVVKGFGQKEGI 899

Query: 338  DFQEIFSPVVKMSSIRVVLGLAASLD 415
            DF EIFSPVVKM+SIR++LG+AAS+D
Sbjct: 900  DFDEIFSPVVKMTSIRIILGMAASMD 925


>dbj|GAU39612.1| hypothetical protein TSUD_276520 [Trifolium subterraneum]
          Length = 1403

 Score =  332 bits (851), Expect(2) = e-137
 Identities = 158/247 (63%), Positives = 197/247 (79%)
 Frame = +1

Query: 421  EEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVY 600
            EEIYM+QP+GF  KGKE  VCRL+KSLYGLKQAPRQWY+KF+S M  Q Y +  SD CV+
Sbjct: 694  EEIYMKQPDGFLVKGKEDYVCRLRKSLYGLKQAPRQWYKKFESVMSEQGYKKTTSDCCVF 753

Query: 601  IKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDR 780
            ++++ + DFII+L+YVD MLIVG+++S I+KL K+L  S  MKDLG+A+QILG+ I RDR
Sbjct: 754  VRKFSNDDFIIILLYVDHMLIVGKNISNIDKLMKQLGESIAMKDLGAAKQILGIRIMRDR 813

Query: 781  KTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYAS 960
            K ++LW+SQE YI++VL+RF M+ +K VS+PL +HFKLSSQQ PS+E E  +MK VPY S
Sbjct: 814  KEKKLWMSQEHYIKRVLQRFQMENSKAVSTPLDTHFKLSSQQSPSSEDETFDMKRVPYTS 873

Query: 961  AVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKASLCFGDGSH 1140
             VGSLMYA+VCTR DIAH VG VSRF+SNPG+EHW AVKWI+RYLRGT    LCFG+   
Sbjct: 874  DVGSLMYAIVCTRSDIAHIVGTVSRFLSNPGREHWDAVKWILRYLRGTICMRLCFGEDKP 933

Query: 1141 RLVCYSD 1161
             L  YSD
Sbjct: 934  TLEGYSD 940



 Score =  186 bits (471), Expect(2) = e-137
 Identities = 85/132 (64%), Positives = 109/132 (82%)
 Frame = +2

Query: 20  VRRSDRDRQPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEAMQDEMDSLEKNHTY 199
           +RRS++ RQPSTRY+S EY+ L D GEP+ ++++ +SD+ Q+W++AM +EM SL  NHTY
Sbjct: 544 LRRSNKQRQPSTRYNSDEYVTLNDEGEPKYFQDIMESDENQKWMDAMNNEMKSLHDNHTY 603

Query: 200 DLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGVDFQEIFSPVVKMSS 379
           DLV+LP G++AL+NRW++R+K E N   PR KARLVVKGF QRKGVDF EIFSPVVKMSS
Sbjct: 604 DLVELPKGEKALENRWIYRVKHESNSGSPRCKARLVVKGFRQRKGVDFNEIFSPVVKMSS 663

Query: 380 IRVVLGLAASLD 415
           IR VL LAA+LD
Sbjct: 664 IRTVLALAATLD 675


>gb|KYP42630.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 701

 Score =  325 bits (834), Expect(2) = e-136
 Identities = 155/247 (62%), Positives = 195/247 (78%)
 Frame = +1

Query: 421  EEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVY 600
            EEIYM+QP+GF  +GKE  VCRL+KSLYGLKQAPRQWY+KF+SFM  Q Y +  SDHCV+
Sbjct: 358  EEIYMKQPDGFLVEGKEDHVCRLRKSLYGLKQAPRQWYKKFESFMCEQGYKKTTSDHCVF 417

Query: 601  IKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDR 780
            +K++   DFIILL+YVDDMLIV +D+S+I++LKK+L  +F MKDLG+A++ILG+SI    
Sbjct: 418  VKKFSDDDFIILLLYVDDMLIVEKDVSRIDRLKKQLGEAFAMKDLGAAKKILGISI---- 473

Query: 781  KTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYAS 960
            K ++LW+SQE YI+KVL+RF M+ +K V +PLA+HFKLS +Q PS E EK  M  VPY  
Sbjct: 474  KEKKLWLSQEHYIKKVLQRFQMENSKVVGTPLAAHFKLSVKQSPSNEAEKTYMSKVPYVY 533

Query: 961  AVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKASLCFGDGSH 1140
            AVGSLMY MVCTRPD+A+ VG VSRF+SNP +EHW AVKWI+RYL GT+   LCFG    
Sbjct: 534  AVGSLMYPMVCTRPDVAYVVGTVSRFLSNPSREHWNAVKWILRYLHGTSGLRLCFGGDKP 593

Query: 1141 RLVCYSD 1161
             LV YS+
Sbjct: 594  TLVGYSN 600



 Score =  191 bits (486), Expect(2) = e-136
 Identities = 93/131 (70%), Positives = 106/131 (80%)
 Frame = +2

Query: 23  RRSDRDRQPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEAMQDEMDSLEKNHTYD 202
           RRS++ RQ S+RYSS EY+ LTD GEPE + E  +S++KQ WL+AMQDEM SL  NHTYD
Sbjct: 209 RRSNKLRQFSSRYSSDEYVALTDGGEPECFEEALESEKKQRWLDAMQDEMKSLHDNHTYD 268

Query: 203 LVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGVDFQEIFSPVVKMSSI 382
           LVKLP GKRAL+NRW+FR+KQE N   PRYKARLVVKGF QR  VDF EIFSPVVKMSSI
Sbjct: 269 LVKLPKGKRALENRWIFRVKQESNSTSPRYKARLVVKGFRQRNDVDFNEIFSPVVKMSSI 328

Query: 383 RVVLGLAASLD 415
           R VL L A+LD
Sbjct: 329 RTVLSLVATLD 339


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease
 emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
          Length = 1328

 Score =  353 bits (905), Expect(2) = e-135
 Identities = 172/247 (69%), Positives = 198/247 (80%)
 Frame = +1

Query: 421  EEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVY 600
            EEIYMEQPEGF   GK+ +VC+L KSLYGLKQAPRQWY KFDSFMK+Q Y +  SD CVY
Sbjct: 934  EEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVY 993

Query: 601  IKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDR 780
             KR+   +FIILL+YVDDMLIVG+D   I KLK +LS SF+MKDLG A+QILGM I R+R
Sbjct: 994  FKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRER 1053

Query: 781  KTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYAS 960
             +R+LW+SQE YIE+VLERF+M+ AKPVS+PLA H KLS + CP+T  EK  M  VPY+S
Sbjct: 1054 TSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSS 1113

Query: 961  AVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKASLCFGDGSH 1140
            AVGSLMYAMVCTRPDIAHAVGVVSRF+ NPGKEHW AVKWI+RYLRGTT   LCFG    
Sbjct: 1114 AVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDP 1173

Query: 1141 RLVCYSD 1161
             L  Y+D
Sbjct: 1174 ILKGYTD 1180



 Score =  160 bits (406), Expect(2) = e-135
 Identities = 80/132 (60%), Positives = 103/132 (78%)
 Frame = +2

Query: 20   VRRSDRDRQPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEAMQDEMDSLEKNHTY 199
            +RRS+R R  S RY S EY+L++D  EPES +EV    +K + ++AMQ+EM+SL+KN TY
Sbjct: 784  LRRSERPRVESRRYPSTEYVLISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTY 843

Query: 200  DLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGVDFQEIFSPVVKMSS 379
             LV+LP GKR LK +WVF+LK++ +    RYKARLVVKGF Q+KG+DF EIFSPVVKM+S
Sbjct: 844  KLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTS 903

Query: 380  IRVVLGLAASLD 415
            IR +L LAASLD
Sbjct: 904  IRTILSLAASLD 915


>gb|OMO51796.1| Reverse transcriptase, RNA-dependent DNA polymerase [Corchorus
            capsularis]
          Length = 1500

 Score =  331 bits (849), Expect(2) = e-134
 Identities = 161/247 (65%), Positives = 196/247 (79%)
 Frame = +1

Query: 421  EEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVY 600
            EEIYM+QPEGF  KGKE +VCRLKKSLYGLKQA RQWY+KFDSFM +  + R A+D CVY
Sbjct: 1028 EEIYMDQPEGFKVKGKEHMVCRLKKSLYGLKQALRQWYKKFDSFMVSHLFKRTATDPCVY 1087

Query: 601  IKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDR 780
             + +   +FIILL+YVDDMLIVGQD+  I KLK +LS SF+MKDLG A+QILGM I RDR
Sbjct: 1088 FRSF-GNNFIILLLYVDDMLIVGQDVELISKLKDDLSRSFDMKDLGPAKQILGMDIIRDR 1146

Query: 781  KTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYAS 960
            K  +LW+SQE Y+E++L+RF+MQ AK VS+PLA+HFKL+ + CP +E +K+EM  + Y+S
Sbjct: 1147 KAGKLWLSQEKYVERILKRFNMQDAKSVSTPLANHFKLTKKSCPVSEKKKDEMAVILYSS 1206

Query: 961  AVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKASLCFGDGSH 1140
             VGSLMY MVCTRPDIAHAVGV+SRF+SNPGK HW AVKWI RYLRGT+K  L F     
Sbjct: 1207 VVGSLMYLMVCTRPDIAHAVGVMSRFLSNPGKVHWEAVKWIFRYLRGTSKMCLSFETSQT 1266

Query: 1141 RLVCYSD 1161
             L  ++D
Sbjct: 1267 ILEGFTD 1273



 Score =  176 bits (447), Expect(2) = e-134
 Identities = 89/134 (66%), Positives = 108/134 (80%)
 Frame = +2

Query: 14   PVVRRSDRDRQPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEAMQDEMDSLEKNH 193
            P +RRS R   PST+Y S E++LLTD GEPES+R+V+ +  KQ WLEAMQ+EMDSL+KN 
Sbjct: 877  PQLRRSARGNIPSTKYPSSEFVLLTDDGEPESFRDVQSTSDKQRWLEAMQEEMDSLQKNG 936

Query: 194  TYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGVDFQEIFSPVVKM 373
            TY+LV+LP GKR LKN+WVF+LK++ N    RYK  LVVKGF Q+  +DF EIFSPVVKM
Sbjct: 937  TYELVELPKGKRPLKNKWVFKLKKDGN-KLVRYKTCLVVKGFAQKACIDFDEIFSPVVKM 995

Query: 374  SSIRVVLGLAASLD 415
            SSIRVVLGLAASL+
Sbjct: 996  SSIRVVLGLAASLN 1009


>gb|KYP63120.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 501

 Score =  361 bits (927), Expect(2) = e-131
 Identities = 174/247 (70%), Positives = 202/247 (81%)
 Frame = +1

Query: 421  EEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVY 600
            EEI MEQPEGF   GK+ LVCRL KSLYGLKQAPRQWY+KF+ FM    + R  SDHCV+
Sbjct: 105  EEICMEQPEGFKVPGKQNLVCRLTKSLYGLKQAPRQWYKKFEFFMAEHEFKRTESDHCVF 164

Query: 601  IKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDR 780
            IKRY SGDF+ILL+YVDDMLIVGQD  KI  LKK+LS SF MKDLG A+QILGM I+RDR
Sbjct: 165  IKRYASGDFLILLLYVDDMLIVGQDRIKIAALKKDLSKSFAMKDLGPAKQILGMRITRDR 224

Query: 781  KTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYAS 960
              R LW+SQE YIEKVLE+F+M K KPV++PLA HF+LSS+Q P++E E EEMK +PY+S
Sbjct: 225  SKRLLWLSQERYIEKVLEQFNMDKCKPVNTPLAGHFRLSSKQSPTSEREMEEMKKIPYSS 284

Query: 961  AVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKASLCFGDGSH 1140
             VGSLMYAM+CTRPDIA+AVGVVSRF++NPG EHW AVKWI+RYLRGT+K  LCFG G  
Sbjct: 285  VVGSLMYAMICTRPDIAYAVGVVSRFLANPGNEHWLAVKWILRYLRGTSKRCLCFGKGKP 344

Query: 1141 RLVCYSD 1161
             L  Y+D
Sbjct: 345  VLEGYTD 351



 Score =  137 bits (345), Expect(2) = e-131
 Identities = 62/86 (72%), Positives = 78/86 (90%)
 Frame = +2

Query: 158 MQDEMDSLEKNHTYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGV 337
           MQ+EM SL +NHTY+LV+LP G+RALKN+WV+R+K E+N  KPRYKARLVVKGF+Q KG+
Sbjct: 1   MQEEMQSLHENHTYELVELPKGRRALKNKWVYRIKTEDNNTKPRYKARLVVKGFSQEKGI 60

Query: 338 DFQEIFSPVVKMSSIRVVLGLAASLD 415
           DF++IFSPVVKMSSIRV+LG+AA+ D
Sbjct: 61  DFEKIFSPVVKMSSIRVILGIAATQD 86


>gb|PRQ29843.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 501

 Score =  358 bits (920), Expect(2) = e-126
 Identities = 166/247 (67%), Positives = 208/247 (84%)
 Frame = +1

Query: 421  EEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVY 600
            EEIYMEQPEGF  + K+ +VC+LKKSLYGLKQAPRQWY+KFDSFM    Y R  +D CVY
Sbjct: 105  EEIYMEQPEGFEVERKQHMVCKLKKSLYGLKQAPRQWYKKFDSFMVGHGYKRTDADPCVY 164

Query: 601  IKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDR 780
            ++R+  G+FIILL+YVDDMLIVG+D+S I KLK +LS SF+MKDLG A+QILGM I+RDR
Sbjct: 165  LQRFTGGNFIILLLYVDDMLIVGKDVSMIRKLKADLSKSFDMKDLGPAKQILGMEITRDR 224

Query: 781  KTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYAS 960
            + ++LW+SQE Y+E+VLERF+M++AK VSSPL +HFKLS   CP+T++EK++M  +PY+S
Sbjct: 225  QAKKLWLSQERYVERVLERFNMKEAKSVSSPLGNHFKLSRLSCPTTQVEKDKMAGIPYSS 284

Query: 961  AVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKASLCFGDGSH 1140
            AVGSLMYAMVCTRPDIAHAVGVVSR++SNPG+EHW AVKWI++YLRGT+K  LCFG    
Sbjct: 285  AVGSLMYAMVCTRPDIAHAVGVVSRYLSNPGREHWEAVKWILKYLRGTSKLCLCFGGSEP 344

Query: 1141 RLVCYSD 1161
             L  ++D
Sbjct: 345  ILEGFTD 351



 Score =  124 bits (311), Expect(2) = e-126
 Identities = 56/86 (65%), Positives = 76/86 (88%)
 Frame = +2

Query: 158 MQDEMDSLEKNHTYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGV 337
           M+ EM+SL KN TY+LV+LP G++ALKN+WVF+LK++EN    ++KARLVVKGF Q++G+
Sbjct: 1   MKSEMESLLKNDTYELVELPKGRKALKNKWVFKLKRDENEQLTKFKARLVVKGFGQKEGI 60

Query: 338 DFQEIFSPVVKMSSIRVVLGLAASLD 415
           DF EIFSPVVKM+SIR++LG+AAS+D
Sbjct: 61  DFDEIFSPVVKMTSIRIILGMAASMD 86