BLASTX nr result
ID: Ophiopogon22_contig00037387
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon22_contig00037387
(542 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_020264489.1| LOW QUALITY PROTEIN: probable RNA-dependent ... 202 5e-57
gb|PKA52670.1| putative RNA-dependent RNA polymerase 2 [Apostasi... 148 7e-38
ref|XP_009381640.1| PREDICTED: probable RNA-dependent RNA polyme... 137 4e-34
ref|XP_020110295.1| probable RNA-dependent RNA polymerase 2 [Ana... 135 1e-33
ref|XP_020701436.1| probable RNA-dependent RNA polymerase 2 [Den... 133 1e-32
ref|XP_008780950.1| PREDICTED: probable RNA-dependent RNA polyme... 127 2e-30
ref|XP_020589018.1| probable RNA-dependent RNA polymerase 2 [Pha... 120 2e-28
ref|XP_019703492.1| PREDICTED: probable RNA-dependent RNA polyme... 119 1e-27
gb|PAN38580.1| hypothetical protein PAHAL_G00532 [Panicum hallii] 114 6e-26
ref|XP_003560510.1| PREDICTED: probable RNA-dependent RNA polyme... 113 1e-25
ref|XP_004978058.1| probable RNA-dependent RNA polymerase 2 [Set... 109 2e-24
gb|KQJ83037.1| hypothetical protein BRADI_5g12757v3 [Brachypodiu... 108 5e-24
ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polyme... 108 5e-24
ref|XP_002446635.1| probable RNA-dependent RNA polymerase 2 [Sor... 106 3e-23
gb|KVI06345.1| Nucleotide-binding, alpha-beta plait [Cynara card... 105 4e-23
gb|OEL28200.1| putative RNA-dependent RNA polymerase 2 [Dichanth... 105 8e-23
ref|XP_015636884.1| PREDICTED: probable RNA-dependent RNA polyme... 103 2e-22
gb|PNX90320.1| RNA-dependent RNA polymerase 2-like protein, part... 98 2e-22
gb|EAZ31020.1| hypothetical protein OsJ_15103 [Oryza sativa Japo... 101 2e-22
ref|XP_008668575.1| RNA-dependent DNA polymerase isoform X1 [Zea... 103 3e-22
>ref|XP_020264489.1| LOW QUALITY PROTEIN: probable RNA-dependent RNA polymerase 2
[Asparagus officinalis]
Length = 1120
Score = 202 bits (515), Expect = 5e-57
Identities = 104/163 (63%), Positives = 124/163 (76%)
Frame = +3
Query: 54 TSPAPKRATVHVNKIPRSATAGELVSFFESAAGPVFACKIASVHTNWKSLGFGQLQFDSL 233
++P P+RAT++VN IPRSATA ELV+FF SA GPVFACKI+SVHTNWKSLGFG++QFDS+
Sbjct: 6 STPKPQRATINVNNIPRSATAXELVAFFSSAIGPVFACKISSVHTNWKSLGFGRVQFDSI 65
Query: 234 ASAQKALDLSSRGLLSFQRVPLSLSESPTDIVPXXXXXXXXXXXXVTIRFGNLAGERELE 413
+SAQKA+ S+ L FQR PLS++ES DIVP V IRFGN+ ER +E
Sbjct: 66 SSAQKAIAFSNTNPLLFQRSPLSIAESHADIVP--RGTGDRRFDDVVIRFGNVRDERSME 123
Query: 414 VLGEWKGARVEVVDERGRKMLLIFVEDGGETYKLEVLFADVVN 542
VLGEW+G RVEVVD RG M+ I +EDGGE YKLEV F DVVN
Sbjct: 124 VLGEWRGVRVEVVDFRGGMMMAISLEDGGEVYKLEVPFGDVVN 166
>gb|PKA52670.1| putative RNA-dependent RNA polymerase 2 [Apostasia shenzhenica]
Length = 1120
Score = 148 bits (373), Expect = 7e-38
Identities = 81/158 (51%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Frame = +3
Query: 72 RATVHVNKIPRSATAGELVSFFESAAGPVFACKIASVHTNWKSLGFGQLQFDSLASAQKA 251
R+TV ++ IPR+A A EL+ FFESA GPV+AC+IAS H NW SLGFG++QF+SLASA+KA
Sbjct: 5 RSTVRISNIPRTAIAEELLRFFESAVGPVYACEIASAHRNWMSLGFGRVQFESLASAEKA 64
Query: 252 LDLSSRGLLS-FQRVPLSLSESPTDIVPXXXXXXXXXXXXVTIRFGNLAGERELEVLGEW 428
L+S G L FQR L++S S D++ V +R G LA E +EVL W
Sbjct: 65 CSLASAGRLPLFQRFHLAVSRSVEDVIVRASEAGNRVRGGV-LRAGVLADEGRMEVLDSW 123
Query: 429 KGARVEVVDERGRKMLLIFVEDGGETYKLEVLFADVVN 542
+G VE++ E RK + +F+EDGGE YKLEV+F DV++
Sbjct: 124 EGVGVEIMPE--RKKMEVFLEDGGECYKLEVMFEDVMS 159
>ref|XP_009381640.1| PREDICTED: probable RNA-dependent RNA polymerase 2 [Musa acuminata
subsp. malaccensis]
Length = 1106
Score = 137 bits (345), Expect = 4e-34
Identities = 75/156 (48%), Positives = 101/156 (64%), Gaps = 1/156 (0%)
Frame = +3
Query: 75 ATVHVNKIPRSATAGELVSFFESAAGPVFACKIASVHTNWKSLGFGQLQFDSLASAQKAL 254
ATVHV+ IP +A AGE +FE+A G VFAC+IA+ NWKS GFG++QFDSLA+A++A
Sbjct: 6 ATVHVSNIPLAAVAGEFFEYFEAAVGSVFACEIATARRNWKSRGFGRVQFDSLAAAERAC 65
Query: 255 DLSSRGLL-SFQRVPLSLSESPTDIVPXXXXXXXXXXXXVTIRFGNLAGERELEVLGEWK 431
L++ G L +FQ L+++ S DIV V +R G L GE +EV G W+
Sbjct: 66 LLAAEGRLPNFQCARLTITRSRDDIVARAAEGRNRVEGAV-LRAGVLVGENRMEVFGVWE 124
Query: 432 GARVEVVDERGRKMLLIFVEDGGETYKLEVLFADVV 539
G R E++ E RK L +FVE GE YKLEV+F D++
Sbjct: 125 GVRAEIMPE--RKKLELFVEQSGEKYKLEVMFGDII 158
>ref|XP_020110295.1| probable RNA-dependent RNA polymerase 2 [Ananas comosus]
Length = 1125
Score = 135 bits (341), Expect = 1e-33
Identities = 77/168 (45%), Positives = 103/168 (61%), Gaps = 1/168 (0%)
Frame = +3
Query: 36 MGEAAPTSPAPKRATVHVNKIPRSATAGELVSFFESAAGPVFACKIASVHTNWKSLGFGQ 215
MG AAPT TV V+ IP SA A EL++FF++A G FAC+I + W+ LGFG+
Sbjct: 1 MGGAAPT-------TVRVSNIPASAVAAELLAFFDAAVGSAFACEIVTARRQWRPLGFGR 53
Query: 216 LQFDSLASAQKALDLSSRGLL-SFQRVPLSLSESPTDIVPXXXXXXXXXXXXVTIRFGNL 392
+QFDS A+A++A L+ G L FQR L+L+ S DIV + G+L
Sbjct: 54 VQFDSAAAAERARALAGDGRLPPFQRASLALAPSGDDIVARAADARNRLEGAALLA-GDL 112
Query: 393 AGERELEVLGEWKGARVEVVDERGRKMLLIFVEDGGETYKLEVLFADV 536
G RE+EV+G W G R E++ E RK L +FVEDGGE YKLE++F D+
Sbjct: 113 VGAREMEVVGSWDGVRAEIMPE--RKKLELFVEDGGEYYKLEIMFGDI 158
>ref|XP_020701436.1| probable RNA-dependent RNA polymerase 2 [Dendrobium catenatum]
gb|PKU68673.1| RNA-dependent RNA polymerase 2 [Dendrobium catenatum]
Length = 1117
Score = 133 bits (334), Expect = 1e-32
Identities = 76/156 (48%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Frame = +3
Query: 72 RATVHVNKIPRSATAGELVSFFESAAGPVFACKIASVHTNWKSLGFGQLQFDSLASAQKA 251
R TV V+ IPR+A A EL+SFFES GPVFAC+IAS H NW SLGFG++QF LA+A+ A
Sbjct: 5 RLTVRVSNIPRTAIAEELLSFFESVVGPVFACEIASAHRNWMSLGFGRVQFKCLAAAENA 64
Query: 252 LDLSSRGLLS-FQRVPLSLSESPTDIVPXXXXXXXXXXXXVTIRFGNLAGERELEVLGEW 428
L S+GLL FQR L++ SP DI+P I + GE ++EV W
Sbjct: 65 CFLYSKGLLPVFQRSNLAVFPSPEDILPRAVDASNRISGG--ILHAGILGEGQMEVFTSW 122
Query: 429 KGARVEVVDERGRKMLLIFVEDGGETYKLEVLFADV 536
+G +E + E RK + IF+EDG E+YKL V+F D+
Sbjct: 123 EGVVLEFMPE--RKKMEIFLEDGRESYKLVVMFEDI 156
>ref|XP_008780950.1| PREDICTED: probable RNA-dependent RNA polymerase 2 [Phoenix
dactylifera]
Length = 1117
Score = 127 bits (318), Expect = 2e-30
Identities = 72/157 (45%), Positives = 95/157 (60%), Gaps = 1/157 (0%)
Frame = +3
Query: 72 RATVHVNKIPRSATAGELVSFFESAAGPVFACKIASVHTNWKSLGFGQLQFDSLASAQKA 251
RATV V+ IP +A A EL FF+SA G VFAC+IA+ H NWKS GFG++QFDSL +A +A
Sbjct: 5 RATVQVSNIPLTAVAQELFEFFDSAVGSVFACEIATAHRNWKSRGFGRVQFDSLTAADRA 64
Query: 252 LDLSSRG-LLSFQRVPLSLSESPTDIVPXXXXXXXXXXXXVTIRFGNLAGERELEVLGEW 428
L+ RG L FQR L++ S DI+ + G L ER +E+ G W
Sbjct: 65 CLLADRGHLPDFQRARLAVRRSNEDII-VRAAEARNRVEGAALHAGVLVSERCMEMFGSW 123
Query: 429 KGARVEVVDERGRKMLLIFVEDGGETYKLEVLFADVV 539
R E++ E R+ L IF+EDGG YKLE+ F D++
Sbjct: 124 DRVRAEIMPE--REKLDIFMEDGGVRYKLEITFGDIL 158
>ref|XP_020589018.1| probable RNA-dependent RNA polymerase 2 [Phalaenopsis equestris]
Length = 1118
Score = 120 bits (302), Expect = 2e-28
Identities = 71/156 (45%), Positives = 96/156 (61%), Gaps = 1/156 (0%)
Frame = +3
Query: 72 RATVHVNKIPRSATAGELVSFFESAAGPVFACKIASVHTNWKSLGFGQLQFDSLASAQKA 251
R+TV V+ IPR+A A EL+ FFESA GPVFAC+I S H NW SLGFG++QFDSLA+A+ A
Sbjct: 5 RSTVRVSNIPRTAIAEELLRFFESAVGPVFACEIVSAHRNWMSLGFGRVQFDSLAAAEIA 64
Query: 252 LDLSSRGLLS-FQRVPLSLSESPTDIVPXXXXXXXXXXXXVTIRFGNLAGERELEVLGEW 428
+SS+G L FQR L++ SP DI P + + G L E +EV W
Sbjct: 65 CLMSSKGRLPIFQRSNLAVFPSPEDIFPRAVDASNRISGGI-LHAGILGDEGRMEVFESW 123
Query: 429 KGARVEVVDERGRKMLLIFVEDGGETYKLEVLFADV 536
+ +E + E RK + IF++ G E++KL V D+
Sbjct: 124 EAVVLEFMPE--RKKMEIFLDYGRESFKLGVNMEDI 157
>ref|XP_019703492.1| PREDICTED: probable RNA-dependent RNA polymerase 2 [Elaeis
guineensis]
Length = 1117
Score = 119 bits (297), Expect = 1e-27
Identities = 69/157 (43%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
Frame = +3
Query: 72 RATVHVNKIPRSATAGELVSFFESAAGPVFACKIASVHTNWKSLGFGQLQFDSLASAQKA 251
RATV V+ IP +A A EL FF++A G VFAC+IA+ NWKS GFG++QFDSL +A++A
Sbjct: 5 RATVQVSNIPLTAVAQELFEFFDAAVGSVFACEIATARRNWKSRGFGRVQFDSLGAAERA 64
Query: 252 LDLSSR-GLLSFQRVPLSLSESPTDIVPXXXXXXXXXXXXVTIRFGNLAGERELEVLGEW 428
L+ R L FQ L++ S DI+ + G L ER +EV G W
Sbjct: 65 CRLADRCDLPDFQGARLAILRSKEDII-VRATEARNRVEGAALHAGILVTERCMEVFGSW 123
Query: 429 KGARVEVVDERGRKMLLIFVEDGGETYKLEVLFADVV 539
R E++ E R+ L +F+EDGG YKLEV F D++
Sbjct: 124 FRVRAEIMPE--REKLELFLEDGGVRYKLEVTFGDIL 158
>gb|PAN38580.1| hypothetical protein PAHAL_G00532 [Panicum hallii]
Length = 1133
Score = 114 bits (284), Expect = 6e-26
Identities = 71/168 (42%), Positives = 99/168 (58%), Gaps = 4/168 (2%)
Frame = +3
Query: 45 AAPTSPAP-KRATVHVNKIPRSATAGELVSFFESAA--GPVFACKIASVHTNWKSLGFGQ 215
AA +PAP ATV V+ IP SA A EL++FF+SA G FAC+IA+ H W S G G
Sbjct: 6 AAAAAPAPGATATVRVSNIPPSAIAAELLAFFDSAVATGAAFACEIAAAHRGWLSRGHGS 65
Query: 216 LQFDSLASAQKALDL-SSRGLLSFQRVPLSLSESPTDIVPXXXXXXXXXXXXVTIRFGNL 392
+QF+S A+A +A+DL SS GL F LS+S + D++P ++ GN
Sbjct: 66 VQFESAAAATRAIDLASSGGLPPFLGSHLSVSPAHVDLLPRAPDFALRALGS-SLVIGNR 124
Query: 393 AGERELEVLGEWKGARVEVVDERGRKMLLIFVEDGGETYKLEVLFADV 536
ERELEV W G R EV+ G++ + ++++ +YKLEVLF D+
Sbjct: 125 VAERELEVAYTWDGVRAEVIP--GKRRVDLYLKHDSRSYKLEVLFEDI 170
>ref|XP_003560510.1| PREDICTED: probable RNA-dependent RNA polymerase 2 [Brachypodium
distachyon]
gb|KQK17355.1| hypothetical protein BRADI_1g33920v3 [Brachypodium distachyon]
Length = 1138
Score = 113 bits (282), Expect = 1e-25
Identities = 67/165 (40%), Positives = 94/165 (56%), Gaps = 2/165 (1%)
Frame = +3
Query: 48 APTSPAP-KRATVHVNKIPRSATAGELVSFFESAAGPVFACKIASVHTNWKSLGFGQLQF 224
A P P ATV V+ IPR A A E+++FF+SA G FAC+I + H W+S G G +QF
Sbjct: 2 AAAVPEPISTATVRVSNIPRLAVAAEILAFFDSAVGATFACEIVAAHRGWQSRGHGTVQF 61
Query: 225 DSLASAQKALDLSSRGLL-SFQRVPLSLSESPTDIVPXXXXXXXXXXXXVTIRFGNLAGE 401
DS A+A A +L+S G L F PLS+S +P D++P + GN E
Sbjct: 62 DSAATATLAAELASSGRLPRFLGSPLSVSPAPADLLP-RAPEPSLRASGARLLVGNRVAE 120
Query: 402 RELEVLGEWKGARVEVVDERGRKMLLIFVEDGGETYKLEVLFADV 536
RELE+ G RVEV+ G++ + +++ + YKLEVLF D+
Sbjct: 121 RELEIAETLAGVRVEVIP--GKRRVDLYLTHDSQRYKLEVLFEDI 163
>ref|XP_004978058.1| probable RNA-dependent RNA polymerase 2 [Setaria italica]
gb|KQK97623.1| hypothetical protein SETIT_009219mg [Setaria italica]
Length = 1130
Score = 109 bits (273), Expect = 2e-24
Identities = 69/168 (41%), Positives = 97/168 (57%), Gaps = 4/168 (2%)
Frame = +3
Query: 45 AAPTSPAP-KRATVHVNKIPRSATAGELVSFFESAAGP--VFACKIASVHTNWKSLGFGQ 215
AA +PAP ATV V+ IP SA A EL++FF+SA FAC+IA+ H W S G G
Sbjct: 3 AAAAAPAPGATATVRVSNIPPSAIAAELLAFFDSAVATDAAFACEIAAAHRGWLSRGHGS 62
Query: 216 LQFDSLASAQKALDLSSRGLL-SFQRVPLSLSESPTDIVPXXXXXXXXXXXXVTIRFGNL 392
+QFDS A+A +A+DL+S G L F LS+S + D++P ++ GN
Sbjct: 63 VQFDSAAAATRAVDLASSGRLPPFLGSRLSVSPAHVDLLPRAPDFALRALGS-SLVVGNR 121
Query: 393 AGERELEVLGEWKGARVEVVDERGRKMLLIFVEDGGETYKLEVLFADV 536
ERELEV W G R E++ + R + ++++ +YKLEVLF D+
Sbjct: 122 VAERELEVAYAWDGVRAEIIPAKRR--VDLYLKHDSRSYKLEVLFEDI 167
>gb|KQJ83037.1| hypothetical protein BRADI_5g12757v3 [Brachypodium distachyon]
Length = 1098
Score = 108 bits (270), Expect = 5e-24
Identities = 69/170 (40%), Positives = 94/170 (55%), Gaps = 5/170 (2%)
Frame = +3
Query: 48 APTSPAP-KRATVHVNKIPRSATAGELVSFFESAA---GPVFACKIASVHTNWKSLGFGQ 215
A P P ATV V+ IPR A A EL++FF+SA G FAC+I + H W+S G G
Sbjct: 2 AAAVPEPISTATVRVSNIPRLAVAAELLAFFDSAVAAVGTTFACEIVAAHRGWQSRGHGT 61
Query: 216 LQFDSLASAQKALDLSSRGLL-SFQRVPLSLSESPTDIVPXXXXXXXXXXXXVTIRFGNL 392
+QFDS A+A A +L+S G L F PLS+S +P D++P + GN
Sbjct: 62 VQFDSAATASLAAELASSGRLPRFLGSPLSVSPAPADLLP-RAPAPSLRASGARLLVGNR 120
Query: 393 AGERELEVLGEWKGARVEVVDERGRKMLLIFVEDGGETYKLEVLFADVVN 542
ERELE+ G RVEV+ G++ + +++ YKLEVLF D+ N
Sbjct: 121 VAERELEMAETLDGVRVEVIP--GKRRVDLYLTHDSHRYKLEVLFEDIRN 168
>ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polymerase 2 [Brachypodium
distachyon]
gb|KQJ83036.1| hypothetical protein BRADI_5g12757v3 [Brachypodium distachyon]
Length = 1140
Score = 108 bits (270), Expect = 5e-24
Identities = 69/170 (40%), Positives = 94/170 (55%), Gaps = 5/170 (2%)
Frame = +3
Query: 48 APTSPAP-KRATVHVNKIPRSATAGELVSFFESAA---GPVFACKIASVHTNWKSLGFGQ 215
A P P ATV V+ IPR A A EL++FF+SA G FAC+I + H W+S G G
Sbjct: 2 AAAVPEPISTATVRVSNIPRLAVAAELLAFFDSAVAAVGTTFACEIVAAHRGWQSRGHGT 61
Query: 216 LQFDSLASAQKALDLSSRGLL-SFQRVPLSLSESPTDIVPXXXXXXXXXXXXVTIRFGNL 392
+QFDS A+A A +L+S G L F PLS+S +P D++P + GN
Sbjct: 62 VQFDSAATASLAAELASSGRLPRFLGSPLSVSPAPADLLP-RAPAPSLRASGARLLVGNR 120
Query: 393 AGERELEVLGEWKGARVEVVDERGRKMLLIFVEDGGETYKLEVLFADVVN 542
ERELE+ G RVEV+ G++ + +++ YKLEVLF D+ N
Sbjct: 121 VAERELEMAETLDGVRVEVIP--GKRRVDLYLTHDSHRYKLEVLFEDIRN 168
>ref|XP_002446635.1| probable RNA-dependent RNA polymerase 2 [Sorghum bicolor]
gb|EES10963.1| hypothetical protein SORBI_3006G111200 [Sorghum bicolor]
Length = 1128
Score = 106 bits (264), Expect = 3e-23
Identities = 69/165 (41%), Positives = 92/165 (55%), Gaps = 5/165 (3%)
Frame = +3
Query: 57 SPAP-KRATVHVNKIPRSATAGELVSFFESAA---GPVFACKIASVHTNWKSLGFGQLQF 224
+PAP ATV V IP SA A EL++FF+SA G FAC+IA+ H W S G G +QF
Sbjct: 5 APAPGATATVRVANIPASAIAAELLAFFDSAVTTTGAAFACEIAAAHRGWLSRGHGSVQF 64
Query: 225 DSLASAQKALDLSSRGLL-SFQRVPLSLSESPTDIVPXXXXXXXXXXXXVTIRFGNLAGE 401
DS A+A A+DL+S G L F LS+S + D++P I GN E
Sbjct: 65 DSSAAAIHAIDLASSGRLPPFLGSCLSVSPAHADLLPRAPDLSLRAADAGLI-LGNRVAE 123
Query: 402 RELEVLGEWKGARVEVVDERGRKMLLIFVEDGGETYKLEVLFADV 536
RELE W G R EV+ + R + ++++ +YKLEVLF D+
Sbjct: 124 RELEAAYSWDGVRAEVIPRKRR--VDLYLKQDSRSYKLEVLFEDI 166
>gb|KVI06345.1| Nucleotide-binding, alpha-beta plait [Cynara cardunculus var.
scolymus]
Length = 1063
Score = 105 bits (263), Expect = 4e-23
Identities = 66/157 (42%), Positives = 92/157 (58%), Gaps = 2/157 (1%)
Frame = +3
Query: 75 ATVHVNKIPRSATAGELVSFFESAAGP--VFACKIASVHTNWKSLGFGQLQFDSLASAQK 248
ATV V+ IPRS TA +L+ F ES G VFAC+I+S H NWKS GFG++QF++L S K
Sbjct: 9 ATVRVSNIPRSVTAQDLLDFLESHTGKSTVFACEISSDHKNWKSRGFGRIQFETLESKSK 68
Query: 249 ALDLSSRGLLSFQRVPLSLSESPTDIVPXXXXXXXXXXXXVTIRFGNLAGERELEVLGEW 428
A+ LS +GLL F+ LSLS S D++ +R G L + VL W
Sbjct: 69 AISLSRQGLLCFKGFNLSLSHSLDDVI-FRPVQPHNRVEHGFLRTGLLLKRDCMSVLESW 127
Query: 429 KGARVEVVDERGRKMLLIFVEDGGETYKLEVLFADVV 539
+ + V+ E RK L +V+ G+ Y+LE+ F+DV+
Sbjct: 128 EDVKAWVLPE--RKSLEFWVKHFGDCYRLELQFSDVL 162
>gb|OEL28200.1| putative RNA-dependent RNA polymerase 2 [Dichanthelium
oligosanthes]
Length = 1165
Score = 105 bits (261), Expect = 8e-23
Identities = 68/168 (40%), Positives = 96/168 (57%), Gaps = 5/168 (2%)
Frame = +3
Query: 48 APTSPAPKR-ATVHVNKIPRSATAGELVSFFESAAGPV---FACKIASVHTNWKSLGFGQ 215
A +PAP ATV V+ IP SA A EL++FF+S A FAC+IA+ H W S G G
Sbjct: 4 AVAAPAPAATATVQVSNIPPSAIAAELLAFFDSLAATADAAFACEIAAAHRGWLSRGRGS 63
Query: 216 LQFDSLASAQKALDLSSRGLL-SFQRVPLSLSESPTDIVPXXXXXXXXXXXXVTIRFGNL 392
+QF S A+A +AL L+S G L F LS+S + D++P ++ GN
Sbjct: 64 VQFYSAAAATRALHLASSGRLPPFLGSRLSVSPAHVDLLPRAPDFALRAVGS-SLAVGNR 122
Query: 393 AGERELEVLGEWKGARVEVVDERGRKMLLIFVEDGGETYKLEVLFADV 536
ERELEV W G R EV+ G++ + ++++ ++YKLEVLF D+
Sbjct: 123 VAERELEVAYAWDGVRAEVIP--GKRRVDLYLKHDSQSYKLEVLFEDI 168
>ref|XP_015636884.1| PREDICTED: probable RNA-dependent RNA polymerase 2 [Oryza sativa
Japonica Group]
sp|Q7XM31.1|RDR2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 2; Short=OsRDR2
emb|CAE04828.1| OSJNBb0048E02.13 [Oryza sativa Japonica Group]
Length = 1136
Score = 103 bits (258), Expect = 2e-22
Identities = 65/166 (39%), Positives = 91/166 (54%), Gaps = 4/166 (2%)
Frame = +3
Query: 51 PTSPAPKRATVHVNKIPRSATAGELVSFFESA---AGPVFACKIASVHTNWKSLGFGQLQ 221
PT+ A A++ V+ IP SA A EL++FF+SA AG FAC+IA+ H W S G G +Q
Sbjct: 2 PTAAAAATASLRVSNIPPSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQ 61
Query: 222 FDSLASAQKALDLSSRGLL-SFQRVPLSLSESPTDIVPXXXXXXXXXXXXVTIRFGNLAG 398
F S A+A A L+S G L F LS+S SP D++P + G+
Sbjct: 62 FGSAAAAAAAAGLASSGRLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLV-VGDRVA 120
Query: 399 ERELEVLGEWKGARVEVVDERGRKMLLIFVEDGGETYKLEVLFADV 536
ER E W G R EV+ G++ + +++E + YKLEVLF D+
Sbjct: 121 ERVFEAADAWDGVRAEVIP--GKRRVDLYLEHDSQRYKLEVLFEDM 164
>gb|PNX90320.1| RNA-dependent RNA polymerase 2-like protein, partial [Trifolium
pratense]
Length = 184
Score = 98.2 bits (243), Expect = 2e-22
Identities = 66/168 (39%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = +3
Query: 42 EAAPTSPAPKRATVHVNKIPRSATAGELVSFFESAAG--PVFACKIASVHTNWKSLGFGQ 215
E PT+P TVHVN IP++ TA +L+ + ESA G +FA +I S H NWKS G G+
Sbjct: 7 EETPTTP-----TVHVNNIPQTVTAKDLLIYLESAIGRSSIFALEIFSEHHNWKSRGTGR 61
Query: 216 LQFDSLASAQKALDLSSRGLLSFQRVPLSLSESPTDIVPXXXXXXXXXXXXVTIRFGNLA 395
+QF++ + KAL LS+ L F+ L LS+S DIV T+ G
Sbjct: 62 VQFETFEAKSKALTLSNNEKLLFKSHFLRLSDSKDDIV-ARPYLARNRLNNCTLHAGFPI 120
Query: 396 GERELEVLGEWKGARVEVVDERGRKMLLIFVEDGGETYKLEVLFADVV 539
G + VL W+G + V+ ER R L +V GGE YKLE+ F +++
Sbjct: 121 GPDCMSVLETWEGVKGWVLPERSR--LEFWVTHGGECYKLEIQFENIL 166
>gb|EAZ31020.1| hypothetical protein OsJ_15103 [Oryza sativa Japonica Group]
Length = 352
Score = 101 bits (252), Expect = 2e-22
Identities = 64/166 (38%), Positives = 90/166 (54%), Gaps = 4/166 (2%)
Frame = +3
Query: 51 PTSPAPKRATVHVNKIPRSATAGELVSFFESA---AGPVFACKIASVHTNWKSLGFGQLQ 221
PT+ A A++ V+ IP SA A EL++FF+SA AG FAC+IA+ H W S G G +Q
Sbjct: 2 PTAAAAATASLRVSNIPPSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQ 61
Query: 222 FDSLASAQKALDLSSRGLL-SFQRVPLSLSESPTDIVPXXXXXXXXXXXXVTIRFGNLAG 398
S A+A A L+S G L F LS+S SP D++P + G+
Sbjct: 62 LGSAAAAAAAAGLASSGRLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLV-VGDRVA 120
Query: 399 ERELEVLGEWKGARVEVVDERGRKMLLIFVEDGGETYKLEVLFADV 536
ER E W G R EV+ G++ + +++E + YKLEVLF D+
Sbjct: 121 ERVFEAADAWDGVRAEVIP--GKRRVDLYLEHDSQRYKLEVLFEDM 164
>ref|XP_008668575.1| RNA-dependent DNA polymerase isoform X1 [Zea mays]
gb|ONM16853.1| mediator of paramutation1 [Zea mays]
Length = 1091
Score = 103 bits (257), Expect = 3e-22
Identities = 68/165 (41%), Positives = 94/165 (56%), Gaps = 5/165 (3%)
Frame = +3
Query: 57 SPAP-KRATVHVNKIPRSATAGELVSFFESA---AGPVFACKIASVHTNWKSLGFGQLQF 224
+PAP ATV V+ IP SA A EL++FF+SA AG FAC+I + H W S G G +QF
Sbjct: 5 APAPGSTATVRVSNIPASAIAAELLAFFDSAVTIAGATFACEIVAAHRGWLSRGHGFVQF 64
Query: 225 DSLASAQKALDLSSRGLL-SFQRVPLSLSESPTDIVPXXXXXXXXXXXXVTIRFGNLAGE 401
DS A+A A+DL+S G L F LS+S + D++P ++ GN E
Sbjct: 65 DSSAAATHAIDLASSGRLPPFLGSCLSVSPARADLLP-RAPDLSLRAASASLILGNRVAE 123
Query: 402 RELEVLGEWKGARVEVVDERGRKMLLIFVEDGGETYKLEVLFADV 536
RELEV G R EV+ R + ++++ ++YKLEVLF D+
Sbjct: 124 RELEVAYSCDGVRAEVIPRMRR--VDLYLKHDSQSYKLEVLFEDI 166