BLASTX nr result

ID: Ophiopogon22_contig00032851 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00032851
         (361 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009398713.1| PREDICTED: probable F-box protein At4g22060 ...    57   4e-07

>ref|XP_009398713.1| PREDICTED: probable F-box protein At4g22060 [Musa acuminata subsp.
           malaccensis]
          Length = 367

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 40/109 (36%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
 Frame = -1

Query: 358 DCHVLLLEPGLSVLQYCRPWDSQWRVCRWGGQLRIADMVVY-GGELYALTVAGRLGIIRF 182
           DC V+L     +VLQYCR  DS W +  W     + DM+ +    LYALT   +L ++  
Sbjct: 172 DCIVVLFAKRSTVLQYCRVGDSLWTIRDWSMLRMVDDMIFFRDNRLYALTATMQLVVV-- 229

Query: 181 DAVNVDKPEFVGLDGQDNIGLDMSIKNSRWFLAECGGELLLVCIRYFGG 35
           D     K   +G    D  G        RW LAE GGEL+++C R+ GG
Sbjct: 230 DLAADPKLWLLG----DGGGRAAEGHRERW-LAESGGELMVLCHRFRGG 273


Top