BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00029599
         (753 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020330878.1| splicing factor 3A subunit 2-like [Oncorhync...    58   4e-06

>ref|XP_020330878.1| splicing factor 3A subunit 2-like [Oncorhynchus kisutch]
          Length = 361

 Score = 58.2 bits (139), Expect = 4e-06
 Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 16/150 (10%)
 Frame = -1

Query: 570 LQQATVLYLSSLLVRTSNQQGAHNTTPSSPTKP---HSQPSPHGWHSHNLTEPANHQQLT 400
           L + ++L     ++ T+     H T PS  T P   H    PH   + +LT    H   T
Sbjct: 206 LSEPSILTTPPPMLTTTYPFITHRTPPSISTTPPLTHLTTHPHLHATLHLTSATLHLHKT 265

Query: 399 PPIRTATII--HHSLSSNQAQHTHLSSST-----------SYTPMQAILLHFTSQHQVIT 259
           PPI T T +  HH+ SS    H HL+ +T            + P     LH T    ++T
Sbjct: 266 PPISTMTTLHPHHATSSISRNHLHLTMATLHLTTPPSISPCHPPFSPCTLHLTMATPILT 325

Query: 258 HSPHSTQAHRTPRPLPHSRLWLGNPPTPAT 169
             P S  A+    P+P S L    PP+  T
Sbjct: 326 CHPSSHHANPPISPIPPSMLTNKQPPSHLT 355