BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00026326
         (1191 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020258675.1| protein RNA-directed DNA methylation 3, part...   362   e-109
gb|ONK75729.1| uncharacterized protein A4U43_C03F19930 [Asparagu...   358   e-108
ref|XP_004961584.1| protein RNA-directed DNA methylation 3 [Seta...   146   2e-34
gb|PAN18741.1| hypothetical protein PAHAL_C02415 [Panicum hallii]     132   1e-29
gb|PAN18742.1| hypothetical protein PAHAL_C02415 [Panicum hallii]     132   1e-29
gb|AQK94717.1| Protein RNA-directed DNA methylation 3 [Zea mays]      128   2e-28
gb|AQK94729.1| Protein RNA-directed DNA methylation 3 [Zea mays]      128   2e-28
gb|AQK94725.1| Protein RNA-directed DNA methylation 3 [Zea mays]      128   2e-28
gb|AQK94713.1| Protein RNA-directed DNA methylation 3 [Zea mays]...   128   3e-28
ref|XP_008656432.1| protein RNA-directed DNA methylation 3 isofo...   128   3e-28
gb|AQK94716.1| Protein RNA-directed DNA methylation 3 [Zea mays]      128   3e-28
ref|XP_008656431.1| protein RNA-directed DNA methylation 3 isofo...   128   3e-28
gb|AQK87063.1| Protein RNA-directed DNA methylation 3 [Zea mays]      123   6e-27
gb|AQK87074.1| Protein RNA-directed DNA methylation 3 [Zea mays]      123   1e-26
gb|AQK87069.1| Protein RNA-directed DNA methylation 3 [Zea mays]      123   1e-26
ref|XP_020395199.1| protein RNA-directed DNA methylation 3 [Zea ...   123   1e-26
ref|XP_006654614.2| PREDICTED: protein RNA-directed DNA methylat...   120   1e-25
gb|AQK94727.1| Protein RNA-directed DNA methylation 3 [Zea mays]      119   2e-25
gb|AQK94723.1| Protein RNA-directed DNA methylation 3, partial [...   119   2e-25
gb|AQK94722.1| Protein RNA-directed DNA methylation 3 [Zea mays]      119   3e-25

>ref|XP_020258675.1| protein RNA-directed DNA methylation 3, partial [Asparagus
            officinalis]
          Length = 1734

 Score =  362 bits (930), Expect = e-109
 Identities = 205/416 (49%), Positives = 242/416 (58%), Gaps = 58/416 (13%)
 Frame = -3

Query: 1189 DSLVKVITVEEQFLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASS 1010
            DSLVKVITV+EQ LS PN+KR++A               GGLSGNGEQT+GA  WDG SS
Sbjct: 568  DSLVKVITVDEQLLSDPNLKRDTAG--------------GGLSGNGEQTLGASSWDGGSS 613

Query: 1009 SWQVLSTSTL-FANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGG 833
            SWQ LSTS   F+ NN QK  QEQGADPW  +VS  AGD + ++DPW SK+S+ AG  GG
Sbjct: 614  SWQDLSTSAFSFSANNDQKSGQEQGADPWAGRVSHVAGDQE-QSDPWVSKASITAGADGG 672

Query: 832  S-DPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAG---------- 686
            S DPWGSK   AARD    ADPWGS  S+ AGD    ADPWGS  S++AG          
Sbjct: 673  SADPWGSKASLAARDDGGSADPWGSKASLPAGD-GGSADPWGSKTSLAAGAEGSSADPWG 731

Query: 685  ------------------------------------------DQGGTDPWGSKLLPVARD 632
                                                      D G  DPWG+KL P AR+
Sbjct: 732  SKASLAAREGGSADPSGNKASLAAGDGGSADPWGSKQTPGTRDGGSADPWGTKLTPGARE 791

Query: 631  KEQGADAWGRNISGAST--DKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGEMNS- 461
            +EQG D WG +I+G +T  + + RADPWGGKT  G SSHSDK FDSW K S  SGE NS 
Sbjct: 792  QEQGVDPWGSSIAGTTTADNNKPRADPWGGKTTHGGSSHSDKTFDSWAKASTASGEENSV 851

Query: 460  WNKSEGGGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPGADPW 281
            WNK+EG G EKDGDGWN+P       ++  S S  ++GAD W SKV    +D   G D W
Sbjct: 852  WNKTEGVGCEKDGDGWNKP-------SASSSFSGRERGADQWESKVPAAAKDHARGVDAW 904

Query: 280  GSKPALSGEDQGGADPWASKRAVGAR-ELEQGDDPWGNKMAATSRDKAQKTDLWGS 116
            GSK +++ +DQGG DPWASK   G R E  QG DPW + +A  +RDK QK D W S
Sbjct: 905  GSKASVANKDQGGEDPWASKVTAGVRAEQGQGTDPWVSNVAVATRDKEQKFDTWSS 960



 Score =  199 bits (505), Expect = 2e-52
 Identities = 119/279 (42%), Positives = 151/279 (54%), Gaps = 8/279 (2%)
 Frame = -3

Query: 928  WGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHK-QGADPWGSNNS 752
            WG      AGD   +           +G  GG   +G +      D++ +    WGS   
Sbjct: 1255 WGRYGGRGAGDGDNQDRQGDYGGGWESGRGGGRGRYGERGGTGNEDNQDRTGGSWGSG-- 1312

Query: 751  ISAGDCEQGADPWGSNKSISAGDQ---GGTDPWGSKLLPVARDKEQGADAWGRNISGAST 581
                   +G   WG + + +  +Q   G    WGS      +++E+GA  WG +++GAST
Sbjct: 1313 -------RGRGQWGGSGTATEENQDKSGEFGGWGSGKSWNQKEQERGAGPWGSSVAGAST 1365

Query: 580  DKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGEMNS-WNKSEGGGFE-KDGDGWNR 407
            DKE+ ADPWG K    +S+HSDKAFDSWVK S TSGE NS W K+ GGG   KDGDGWN+
Sbjct: 1366 DKEQNADPWGSKATPSESNHSDKAFDSWVKASSTSGERNSLWAKTTGGGGSGKDGDGWNK 1425

Query: 406  PFVKTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPGADPWGSKPALSGEDQGGADPWA 227
               KT   T G+ S D  +GA  W S  S   RD   GADPWGSK + + +D+G ADPW 
Sbjct: 1426 SSTKTISSTLGMISPDQGEGAATWASGSS---RDKTQGADPWGSKASPAAKDKGEADPWG 1482

Query: 226  SKRAVGAR-ELEQGDDPWGNKMAATSR-DKAQKTDLWGS 116
             K A  AR +  QG D WG+K AA SR DK QK D WGS
Sbjct: 1483 GKLAASARADPGQGADAWGSKAAAPSRADKEQKADAWGS 1521



 Score =  136 bits (343), Expect = 4e-31
 Identities = 96/320 (30%), Positives = 140/320 (43%), Gaps = 37/320 (11%)
 Frame = -3

Query: 952  EQEQGADPWGSKVS--LAAGDHKPEADPWG------------------SKSSVAAGDLGG 833
            EQEQG DPWGS ++    A ++KP ADPWG                  +K+S A+G+   
Sbjct: 791  EQEQGVDPWGSSIAGTTTADNNKPRADPWGGKTTHGGSSHSDKTFDSWAKASTASGEENS 850

Query: 832  -------------SDPWGSKLVPAA-RDHKQGADPWGSNNSISAGDCEQGADPWGSNKSI 695
                          D W      ++    ++GAD W S    +A D  +G D WGS  S+
Sbjct: 851  VWNKTEGVGCEKDGDGWNKPSASSSFSGRERGADQWESKVPAAAKDHARGVDAWGSKASV 910

Query: 694  SAGDQGGTDPWGSKLLPVARDKE-QGADAWGRNISGASTDKEERADPWGGKTALGDSSHS 518
            +  DQGG DPW SK+    R ++ QG D W  N++ A+ DKE++ D W  K AL  +S  
Sbjct: 911  ANKDQGGEDPWASKVTAGVRAEQGQGTDPWVSNVAVATRDKEQKFDTWSSKAALAPNSVG 970

Query: 517  DKAFDSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADP 338
            D              + +SW+K+ GGG  +DGD W++P  K T      SSS        
Sbjct: 971  D--------------QNSSWDKAAGGGSGEDGDSWSKPSCKGTTVAVNNSSS------SS 1010

Query: 337  WGSKVSVTVRDDKPGADP--WGSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKM 164
            W +    T   +K   +P  W  K  +S + Q G D  A         ++   D W N  
Sbjct: 1011 WETAAIGTKSAEKQEGEPSSW-DKAKVSSDGQSGWDMAAGS------SIKNNTDGWNNP- 1062

Query: 163  AATSRDKAQKTDLWGSNVHW 104
             ++  D+     + G+   W
Sbjct: 1063 KSSGGDQVSNWKMGGNEDAW 1082



 Score =  124 bits (310), Expect = 8e-27
 Identities = 117/366 (31%), Positives = 150/366 (40%), Gaps = 90/366 (24%)
 Frame = -3

Query: 1072 GGLSGNGEQTVGAGLWDGASSSWQVLSTST-----LFANNNVQKIEQEQGADPWGSKVSL 908
            GG  G+G    G G W G+ ++ +     +       +  +  + EQE+GA PWGS V+ 
Sbjct: 1306 GGSWGSGR---GRGQWGGSGTATEENQDKSGEFGGWGSGKSWNQKEQERGAGPWGSSVAG 1362

Query: 907  AAGDHKPEADPWGSKS--------------------------SVAAGDLGGS------DP 824
            A+ D +  ADPWGSK+                          S+ A   GG       D 
Sbjct: 1363 ASTDKEQNADPWGSKATPSESNHSDKAFDSWVKASSTSGERNSLWAKTTGGGGSGKDGDG 1422

Query: 823  WG--------SKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTD 668
            W         S L   + D  +GA  W S +S    D  QGADPWGS  S +A D+G  D
Sbjct: 1423 WNKSSTKTISSTLGMISPDQGEGAATWASGSS---RDKTQGADPWGSKASPAAKDKGEAD 1479

Query: 667  PWGSKLLPVAR-DKEQGADAWGRNISGAS-TDKEERADPWGGKTALGDSSH--------- 521
            PWG KL   AR D  QGADAWG   +  S  DKE++AD WG K A GDSS+         
Sbjct: 1480 PWGGKLAASARADPGQGADAWGSKAAAPSRADKEQKADAWGSKAAPGDSSNNQNSPWNKV 1539

Query: 520  ----SDKAFDSWVKVSGTS-------------------------GEMNSWNKS-----EG 443
                S K  D W K +  S                         G  ++WN S     EG
Sbjct: 1540 AGEGSGKDGDGWSKAATYSTKNGADGWDKPKSFGSNQASNWKKEGNEDAWNSSNKPKVEG 1599

Query: 442  GGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPGADPWGSKPAL 263
             G E     W +P V +T  T G SS   K G + W +  +      KP    WG   + 
Sbjct: 1600 QGSE-PSSSWEKPKV-STGATWGSSS---KNGTNEWNNGGNEDAW-KKPRGSDWGGGDS- 1652

Query: 262  SGEDQG 245
            S E QG
Sbjct: 1653 SREGQG 1658


>gb|ONK75729.1| uncharacterized protein A4U43_C03F19930 [Asparagus officinalis]
          Length = 1710

 Score =  358 bits (920), Expect = e-108
 Identities = 203/413 (49%), Positives = 240/413 (58%), Gaps = 55/413 (13%)
 Frame = -3

Query: 1189 DSLVKVITVEEQFLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASS 1010
            DSLVKVITV+EQ LS PN+KR++A               GGLSGNGEQT+GA  WDG SS
Sbjct: 547  DSLVKVITVDEQLLSDPNLKRDTAG--------------GGLSGNGEQTLGASSWDGGSS 592

Query: 1009 SWQVLSTSTL-FANNNVQKIEQEQGADPW------------------------------- 926
            SWQ LSTS   F+ NN QK  QEQGADPW                               
Sbjct: 593  SWQDLSTSAFSFSANNDQKSGQEQGADPWAGRVSHVAGDQEQSDPWVSKASITAGDGGSA 652

Query: 925  ---GSKVSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGSNN 755
               GSK SLAA D    ADPWGSK+S+ AGD G +DPWGSK   AA +    ADPWGS  
Sbjct: 653  DPWGSKASLAARDDGGSADPWGSKASLPAGDGGSADPWGSKTSLAAGE-GSSADPWGSKA 711

Query: 754  SISA---GDCEQ-------------GADPWGSNKSISAGDQGGTDPWGSKLLPVARDKEQ 623
            S++A   G  +               ADPWGS ++    D G  DPWG+KL P AR++EQ
Sbjct: 712  SLAAREGGSADPSGNKASLAAGDGGSADPWGSKQTPGTRDGGSADPWGTKLTPGAREQEQ 771

Query: 622  GADAWGRNISGAST--DKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGEMNS-WNK 452
            G D WG +I+G +T  + + RADPWGGKT  G SSHSDK FDSW K S  SGE NS WNK
Sbjct: 772  GVDPWGSSIAGTTTADNNKPRADPWGGKTTHGGSSHSDKTFDSWAKASTASGEENSVWNK 831

Query: 451  SEGGGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPGADPWGSK 272
            +EG G EKDGDGWN+       P++  S S  ++GAD W SKV    +D   G D WGSK
Sbjct: 832  TEGVGCEKDGDGWNK-------PSASSSFSGRERGADQWESKVPAAAKDHARGVDAWGSK 884

Query: 271  PALSGEDQGGADPWASKRAVGAR-ELEQGDDPWGNKMAATSRDKAQKTDLWGS 116
             +++ +DQGG DPWASK   G R E  QG DPW + +A  +RDK QK D W S
Sbjct: 885  ASVANKDQGGEDPWASKVTAGVRAEQGQGTDPWVSNVAVATRDKEQKFDTWSS 937



 Score =  203 bits (517), Expect = 5e-54
 Identities = 119/278 (42%), Positives = 151/278 (54%), Gaps = 7/278 (2%)
 Frame = -3

Query: 928  WGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHK-QGADPWGSNNS 752
            WG      AGD   +           +G  GG   +G +      D++ +    WGS   
Sbjct: 1232 WGRYGGRGAGDGDNQDRQGDYGGGWESGRGGGRGRYGERGGTGNEDNQDRTGGSWGSG-- 1289

Query: 751  ISAGDCEQGADPWGSNKSISAGDQ---GGTDPWGSKLLPVARDKEQGADAWGRNISGAST 581
                   +G   WG + + +  +Q   G    WGS      +++E+GA  WG +++GAST
Sbjct: 1290 -------RGRGQWGGSGTATEENQDKSGEFGGWGSGKSWNQKEQERGAGPWGSSVAGAST 1342

Query: 580  DKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGEMNS-WNKSEGGGFE-KDGDGWNR 407
            DKE+ ADPWG K    +S+HSDKAFDSWVK S TSGE NS W K+ GGG   KDGDGWN+
Sbjct: 1343 DKEQNADPWGSKATPSESNHSDKAFDSWVKASSTSGERNSLWAKTTGGGGSGKDGDGWNK 1402

Query: 406  PFVKTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPGADPWGSKPALSGEDQGGADPWA 227
               KT   T G+ S D  +GA  W S  S   RD   GADPWGSK + + +D+G ADPW 
Sbjct: 1403 SSTKTISSTLGMISPDQGEGAATWASGSS---RDKTQGADPWGSKASPAAKDKGEADPWG 1459

Query: 226  SKRAVGARELEQGDDPWGNKMAATSR-DKAQKTDLWGS 116
             K A  AR+  QG D WG+K AA SR DK QK D WGS
Sbjct: 1460 GKLAASARDPGQGADAWGSKAAAPSRADKEQKADAWGS 1497



 Score =  150 bits (378), Expect = 1e-35
 Identities = 118/366 (32%), Positives = 159/366 (43%), Gaps = 46/366 (12%)
 Frame = -3

Query: 1072 GGLSGNGEQTVGAGLWDGASSSWQVLSTST-----LFANNNVQKIEQEQGADPWGSKVSL 908
            GG  G+G    G G W G+ ++ +     +       +  +  + EQE+GA PWGS V+ 
Sbjct: 1283 GGSWGSGR---GRGQWGGSGTATEENQDKSGEFGGWGSGKSWNQKEQERGAGPWGSSVAG 1339

Query: 907  AAGDHKPEADPWGSKS--------------------------SVAAGDLGGS------DP 824
            A+ D +  ADPWGSK+                          S+ A   GG       D 
Sbjct: 1340 ASTDKEQNADPWGSKATPSESNHSDKAFDSWVKASSTSGERNSLWAKTTGGGGSGKDGDG 1399

Query: 823  WG--------SKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTD 668
            W         S L   + D  +GA  W S +S    D  QGADPWGS  S +A D+G  D
Sbjct: 1400 WNKSSTKTISSTLGMISPDQGEGAATWASGSS---RDKTQGADPWGSKASPAAKDKGEAD 1456

Query: 667  PWGSKLLPVARDKEQGADAWGRNISGAS-TDKEERADPWGGKTALGDSSHSDKAFDSWVK 491
            PWG KL   ARD  QGADAWG   +  S  DKE++AD WG K A GDSS++         
Sbjct: 1457 PWGGKLAASARDPGQGADAWGSKAAAPSRADKEQKADAWGSKAAPGDSSNN--------- 1507

Query: 490  VSGTSGEMNSWNKSEGGGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKVSVTV 311
                  + + WNK  G G  KDGDGW++    +T           K GAD W        
Sbjct: 1508 ------QNSPWNKVAGEGSGKDGDGWSKAATYST-----------KNGADGW-------- 1542

Query: 310  RDDKPGADPWGSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKMAATSRDKAQKT 131
              DKP +  +GS  A + + +G  D W S      +   QG +P     ++  + K    
Sbjct: 1543 --DKPKS--FGSNQASNWKKEGNEDAWNSSNK--PKVEGQGSEP----SSSWEKPKVSTG 1592

Query: 130  DLWGSN 113
              WGS+
Sbjct: 1593 ATWGSS 1598



 Score =  115 bits (287), Expect = 7e-24
 Identities = 93/312 (29%), Positives = 130/312 (41%), Gaps = 18/312 (5%)
 Frame = -3

Query: 1048 QTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWG 869
            +T G G  +     W   S S+ F+        +E+GAD W SKV  AA DH    D WG
Sbjct: 831  KTEGVGC-EKDGDGWNKPSASSSFSG-------RERGADQWESKVPAAAKDHARGVDAWG 882

Query: 868  SKSSVAAGDLGGSDPWGSKLVPAAR-DHKQGADPWGSNNSISAGDCEQGADPWGSNKSI- 695
            SK+SVA  D GG DPW SK+    R +  QG DPW SN +++  D EQ  D W S  ++ 
Sbjct: 883  SKASVANKDQGGEDPWASKVTAGVRAEQGQGTDPWVSNVAVATRDKEQKFDTWSSKAALA 942

Query: 694  --SAGDQGGTDPWGSKLLPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSH 521
              S GDQ  +  W            +  D+W +     +T     +     +TA   +  
Sbjct: 943  PNSVGDQNSS--WDK---AAGGGSGEDGDSWSKPSCKGTTVAVNNSSSSSWETAAIGTKS 997

Query: 520  SDKAF---DSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRPFVKTTPPTSGISSSDHKQ 350
            ++K      SW K   +S   + W+ + G   + + DGWN P       + G   S+ K 
Sbjct: 998  AEKQEGEPSSWDKAKVSSDGQSGWDMAAGSSIKNNTDGWNNP-----KSSGGDQVSNWKM 1052

Query: 349  GA--DPWGSKVSVT---------VRDDKPGADPWGSKPALSGEDQGGADPWASKRAVGAR 203
            G   D W S    T          R    G + W +KP  S   QG      S    GA 
Sbjct: 1053 GGNEDAWKSSKRDTWEKSSEFEGGRGFGSGGNSW-NKPVDSDGGQGSGWGKGSGWDDGAG 1111

Query: 202  ELEQGDDPWGNK 167
              + GD+ W  +
Sbjct: 1112 SGQGGDNGWNRQ 1123


>ref|XP_004961584.1| protein RNA-directed DNA methylation 3 [Setaria italica]
          Length = 1702

 Score =  146 bits (368), Expect = 2e-34
 Identities = 124/389 (31%), Positives = 179/389 (46%), Gaps = 27/389 (6%)
 Frame = -3

Query: 1189 DSLVKVITVEEQFLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASS 1010
            DSL+K++TV+ +FLS+P  + ++++  P+  FG+Q+    G S   + +   GL    S 
Sbjct: 631  DSLLKIVTVQAEFLSVPANRGDNSSGAPAGNFGSQDTSFFG-SEADKASWDNGLPSFGSD 689

Query: 1009 SWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKP-------EADPWGSKSSVA 851
            SWQ  S+STL A N       E  +DPW  K S A G+  P       ++DPWG+K  V 
Sbjct: 690  SWQPFSSSTLPAQN----AGGESESDPW-CKKSSAGGESDPWGKKTDSDSDPWGNK-VVP 743

Query: 850  AGDLGGSDPWGSKLV-PAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGG 674
            +GD G SDPWG K+V PA  D    +DPWG    + A   +  +DPWG  K + A   G 
Sbjct: 744  SGD-GDSDPWGKKVVAPADGD----SDPWGKKVVVPA---DGDSDPWG--KKVVAPADGD 793

Query: 673  TDPWGSKLLPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWV 494
            +DPWG K   V    +  +D WG+ +   +   +  +DPWG K      + +D   D W 
Sbjct: 794  SDPWGKK---VMAPSDGDSDPWGKKVVAPA---DGDSDPWGKKVV----APADGDSDPWA 843

Query: 493  K----------VSGTSGEMNS----WNKSEG-GGFEKDGDGWNRPFVKTTPPTSGISSSD 359
            K           +GT+ + +S    W+K  G GG +  G  W+R            S + 
Sbjct: 844  KNTTSSAFRVLNTGTTQKESSSGKVWDKQAGVGGSDAAGSSWDR-----------TSVNK 892

Query: 358  HKQGADPWGSKVSVTVRDDKPGADPWGSKPALSGEDQGGADPWASKRAVGARELE---QG 188
              + +D WG    V        ADPWG+K  +   D  G D W         +LE   QG
Sbjct: 893  ECEKSDNWGEACRVADMGTGGDADPWGNK--VKAVDMEGTDSWDKATMPPDNKLEGVSQG 950

Query: 187  -DDPWGNKMAATSRDKAQKTDLWGSNVHW 104
               P GN      +D   K +  G+N  W
Sbjct: 951  WGQPLGNSNEGQGKDNFSKAE--GNNGGW 977



 Score = 76.3 bits (186), Expect = 5e-11
 Identities = 78/327 (23%), Positives = 127/327 (38%), Gaps = 8/327 (2%)
 Frame = -3

Query: 1072 GGLSGNGEQTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGS----KVSLA 905
            GG S   + T   G W G + +     ++  ++++   K   E     W S    K S+ 
Sbjct: 1195 GGSSDWNKDTSNKGSWGGDNWNATNPPSNQPWSSSGGTKSYGENKPSTWNSSEDNKTSVG 1254

Query: 904  AGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQG 725
              D     DPW SK +   G    +D W SK+  A  +   G     + +S S G  E  
Sbjct: 1255 EQD-----DPWASKVASTEGKEQRNDTWASKMTSAGAEDSSGGWNTKTKDSCSDGGEESQ 1309

Query: 724  ADPWGSNKSISAGDQGGTDPWGSKL-LPVARDKEQGADAWGRNISGASTDKEERA-DPWG 551
             D W +    + G +  TDPW SK+   V  D   G+    R+ +   T  EE+A DPW 
Sbjct: 1310 NDSWANKIGSNKGKEQETDPWASKVPSTVGSDDNNGS----RSTTAKGTPSEEKADDPWS 1365

Query: 550  GKTALGDSSHSDKAFDSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRPFVKTTPPTSGI 371
             K       + +   DSW   S    + +SW+K      +++ + W++       P  G 
Sbjct: 1366 SK-----GGNDNIKIDSWGAGSSDGNQESSWSKPNFSLGDQE-NTWSK-------PRFGD 1412

Query: 370  SSSDHKQGADPWGSKVSVTVRDDKPGADPW--GSKPALSGEDQGGADPWASKRAVGAREL 197
             +  + +G    G +     R+   G   W  G++   SG ++    PW  +     R  
Sbjct: 1413 DNGGNSRGGFGRGYRGRGRGRNFGDGGSSWNGGNRNDESGGER-SEQPWNRRDLDAGRGR 1471

Query: 196  EQGDDPWGNKMAATSRDKAQKTDLWGS 116
             +G    G++    S   +     WGS
Sbjct: 1472 GRGCYGRGDRNQGNSNFGSADGGSWGS 1498



 Score = 67.0 bits (162), Expect = 4e-08
 Identities = 92/367 (25%), Positives = 124/367 (33%), Gaps = 46/367 (12%)
 Frame = -3

Query: 1072 GGLSG--NGEQTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAG 899
            GGL+   + ++  GAG WD ++++W          N +    E ++G   WG      A 
Sbjct: 1001 GGLNEARSSDKNGGAGGWDTSAANW----------NKSSVVAEAQEGG--WGK--GKGAS 1046

Query: 898  DHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGSNNSISAG------- 740
            D     D W    S   G   GS  W       A D       W  + S   G       
Sbjct: 1047 DQAGLGD-WDKPKSFGGG---GSSSWNKGEETRADDQNNS---WSRHGSFGGGRGFVRGR 1099

Query: 739  -------DCEQGADPWGSNKSISAGDQGGTDPWGSKLLPVARDKEQGADAWGRNISGAST 581
                       G    GS KS   GD  G   W S    V  +       WGR   G   
Sbjct: 1100 GRGRGESGDSDGTTDQGSWKSPWGGDNAGRPSWRSDS-NVDNEVGDSGGYWGRGRGGRGQ 1158

Query: 580  ---DKEERADPW--GGKTALGDSSHSDKAF-DSWVKVSGTSGEMNSWNKSEGGGFEKDGD 419
                   R + W  G ++  G    +D A    W      +G  + WNK         GD
Sbjct: 1159 YGGRGRGRDNGWRNGDRSNSGIGRENDGADGQKW-----GNGGSSDWNKDTSNKGSWGGD 1213

Query: 418  GWNRPFVKTTPP--TSGISSSDHKQGADPWGS----KVSVTVRDDKPGADPWGSKPALSG 257
             WN     +  P  +SG + S  +     W S    K SV  +DD     PW SK A + 
Sbjct: 1214 NWNATNPPSNQPWSSSGGTKSYGENKPSTWNSSEDNKTSVGEQDD-----PWASKVASTE 1268

Query: 256  EDQGGADPWASKRAVGARELEQG------------------DDPWGNKMAATSRDKAQKT 131
              +   D WASK      E   G                  +D W NK+  +++ K Q+T
Sbjct: 1269 GKEQRNDTWASKMTSAGAEDSSGGWNTKTKDSCSDGGEESQNDSWANKI-GSNKGKEQET 1327

Query: 130  DLWGSNV 110
            D W S V
Sbjct: 1328 DPWASKV 1334


>gb|PAN18741.1| hypothetical protein PAHAL_C02415 [Panicum hallii]
          Length = 1664

 Score =  132 bits (331), Expect = 1e-29
 Identities = 105/352 (29%), Positives = 155/352 (44%), Gaps = 1/352 (0%)
 Frame = -3

Query: 1189 DSLVKVITVEEQFLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASS 1010
            DSL+K++TV+ +FLS+P  + ++ +  P+  FG+Q+    G S   + +   GL    S 
Sbjct: 627  DSLLKIVTVQAEFLSVPANRGDNLSGAPAGNFGSQDTSFFG-SEAEKTSWDNGLPSFGSD 685

Query: 1009 SWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGS 830
            SWQ  S+STL     VQ    E   DPW SK S A G    E+DPWG K+       G  
Sbjct: 686  SWQPFSSSTL----PVQNTGGESENDPW-SKKSSAEG----ESDPWGKKTD------GDP 730

Query: 829  DPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKL 650
            DPWG+K+  +A      +DPWG+  + SA   +  +DPWG+  + SA   G +DPWG K+
Sbjct: 731  DPWGNKVAHSA---DGDSDPWGNKVAPSA---DGDSDPWGNKVAPSA--YGDSDPWGKKV 782

Query: 649  LPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGE 470
            +  A      +DAWG+  + ++         W    A  +SS                  
Sbjct: 783  VTPAHG---DSDAWGKKTTSSA------VGVWNAGAAQKESSSD---------------- 817

Query: 469  MNSWNKSEG-GGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPG 293
             N+W K  G G  +  G  W+           G   +   + +D WG    V        
Sbjct: 818  -NAWGKQAGVGRSDAAGSSWD-----------GTVVNKESEKSDNWGEACRVVDMGTGAD 865

Query: 292  ADPWGSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKMAATSRDKAQ 137
            ADPWGSK  +   D  G D W         +LE     WG  +  ++ D+ +
Sbjct: 866  ADPWGSK--VKAIDTEGTDSWEKATMPPDNKLEGVSQGWGRPLGKSNEDQGK 915



 Score = 81.3 bits (199), Expect = 1e-12
 Identities = 69/276 (25%), Positives = 115/276 (41%), Gaps = 4/276 (1%)
 Frame = -3

Query: 931  PWGSK-VSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGSNN 755
            PW S  V+ + G++KP        +  + G    +D W SK+  A  +   G     + +
Sbjct: 1178 PWSSSGVTKSFGENKPSTWNSSKDNKPSVGKEQQNDTWASKMTSAGAEDNSGGWNTRAKD 1237

Query: 754  SISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKLLPVARDKEQGADAWGRNISGASTDK 575
            S + G  E+  DPW +    +   +  TDPW SK +P +   +    +W  N +   T  
Sbjct: 1238 SCTDGGEERQNDPWANKAGTNKDKEQETDPWTSK-VPSSVGSDDNNSSW--NTTAKDTPS 1294

Query: 574  EERA-DPWGGKTALGDSSHSDKAFDSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRPFV 398
            EE+A DPW  K     S+ + K  DSW   S    + +SW+K     F      W++P  
Sbjct: 1295 EEKAGDPWSSK----GSNDNIKKTDSWGAGSSGGNQESSWSKP---NFSLGDQAWSKPRF 1347

Query: 397  KTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPGADPW--GSKPALSGEDQGGADPWAS 224
                      +  + +G    G +     R+   G   W  G+K   SG ++   +PW+S
Sbjct: 1348 G--------DNGGNSRGGFGRGYRGRGRGRNFGDGGSSWNGGNKNDESGGER-SEEPWSS 1398

Query: 223  KRAVGARELEQGDDPWGNKMAATSRDKAQKTDLWGS 116
            +   G R   +G    G++   +S   +  +  WGS
Sbjct: 1399 RDLDGGRGRGRGRFGRGDRSQGSSNFGSGDSGSWGS 1434



 Score = 70.1 bits (170), Expect = 4e-09
 Identities = 87/338 (25%), Positives = 129/338 (38%), Gaps = 22/338 (6%)
 Frame = -3

Query: 1057 NGEQTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGD-HKPEA 881
            + ++  GAG WD ++++W   S         V + ++E      G+      GD  KP++
Sbjct: 959  SSDKNGGAGGWDTSAANWNKSSA--------VGEAQEEGWGKGKGASDQAGCGDWEKPKS 1010

Query: 880  ------DPWGSKSSVAAGDLGGSDPWGSK-LVPAARDHKQGADPWGSNNSISAGDCEQGA 722
                    W       A D   S  W         R   +G    G       GD + G 
Sbjct: 1011 FGNDGSSRWNKGEETRADDQNNS--WSKPGNFGGGRGFGRGQ---GRGRGQECGDFD-GR 1064

Query: 721  DPWGSNKSISAGDQGGTDPW--GSKLLPVARDKE--QGADAWGRNISGASTDKEERADPW 554
            +  GS KS   G+  G   W   SK+     D    +G    GR   G      +     
Sbjct: 1065 NDQGSWKSSWGGESAGRTSWRSDSKVDNEVGDSSGYRGRGRGGRGQYGGRGRGRDNGWRN 1124

Query: 553  GGKTALGDSSHSDKAF-DSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRPFVKTTPP-- 383
            G ++  G    +D A   +W     +  + +S NK   GG    GD WN     +  P  
Sbjct: 1125 GDRSDSGFGRENDSADGQNWGNRGSSYWDKDSSNKGSWGG----GDNWNATNPPSNQPWS 1180

Query: 382  TSGISSSDHKQGADPWGSKVSVTVRDDKPGA------DPWGSKPALSG-EDQGGADPWAS 224
            +SG++ S  +     W S      +D+KP        D W SK   +G ED  G     +
Sbjct: 1181 SSGVTKSFGENKPSTWNSS-----KDNKPSVGKEQQNDTWASKMTSAGAEDNSGGWNTRA 1235

Query: 223  KRAVGARELEQGDDPWGNKMAATSRDKAQKTDLWGSNV 110
            K +      E+ +DPW NK A T++DK Q+TD W S V
Sbjct: 1236 KDSCTDGGEERQNDPWANK-AGTNKDKEQETDPWTSKV 1272



 Score = 60.1 bits (144), Expect = 7e-06
 Identities = 81/363 (22%), Positives = 121/363 (33%), Gaps = 74/363 (20%)
 Frame = -3

Query: 979  FANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPA 800
            +AN      ++EQ  DPW SKV  + G     +  W + +     +    DPW SK    
Sbjct: 1251 WANKAGTNKDKEQETDPWTSKVPSSVGSDDNNSS-WNTTAKDTPSEEKAGDPWSSK---G 1306

Query: 799  ARDHKQGADPWGSNNS------------ISAGDCE------------------------- 731
            + D+ +  D WG+ +S             S GD                           
Sbjct: 1307 SNDNIKKTDSWGAGSSGGNQESSWSKPNFSLGDQAWSKPRFGDNGGNSRGGFGRGYRGRG 1366

Query: 730  ------QGADPW-GSNKSISAGDQGGTDPWGSKLLPVARDKEQGADAWGRNISGASTDKE 572
                   G   W G NK+  +G +   +PW S+ L   R + +G    G    G+S    
Sbjct: 1367 RGRNFGDGGSSWNGGNKNDESGGERSEEPWSSRDLDGGRGRGRGRFGRGDRSQGSSNFGS 1426

Query: 571  ERADPWGGKTALGD-SSHSDKAFDSWVKVSGTSGEMNS-WNKSEGGG-----FEKDGDGW 413
              +  WG     GD   + +   ++  +  G  G  +S WN S+G G     F K    W
Sbjct: 1427 GDSGSWGSGRENGDRGGYRNWNGNNEQRSFGQGGGWSSDWNGSKGSGEGGQAFAKSKPSW 1486

Query: 412  NRPFV-------------------KTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPGA 290
                +                   +++P   G  SSD  + +  WG+           G 
Sbjct: 1487 EAQNMSGGDDQAGNSDANKSWSRNRSSPSILGQPSSDANK-SSTWGA-----TSGGAGGG 1540

Query: 289  DPWGSKPALSGEDQGGADPWASKRAVG----ARELEQGDDPWGNKMAATSRDKAQKTDLW 122
              WG     S    GGA   A K + G    A   +  D PWG      S +     D W
Sbjct: 1541 GSWGKSNEDSWNSSGGA---AEKSSWGGGSEAPPKKDDDGPWGKGGEGKSNE-----DSW 1592

Query: 121  GSN 113
             S+
Sbjct: 1593 NSS 1595


>gb|PAN18742.1| hypothetical protein PAHAL_C02415 [Panicum hallii]
          Length = 1679

 Score =  132 bits (331), Expect = 1e-29
 Identities = 105/352 (29%), Positives = 155/352 (44%), Gaps = 1/352 (0%)
 Frame = -3

Query: 1189 DSLVKVITVEEQFLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASS 1010
            DSL+K++TV+ +FLS+P  + ++ +  P+  FG+Q+    G S   + +   GL    S 
Sbjct: 627  DSLLKIVTVQAEFLSVPANRGDNLSGAPAGNFGSQDTSFFG-SEAEKTSWDNGLPSFGSD 685

Query: 1009 SWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGS 830
            SWQ  S+STL     VQ    E   DPW SK S A G    E+DPWG K+       G  
Sbjct: 686  SWQPFSSSTL----PVQNTGGESENDPW-SKKSSAEG----ESDPWGKKTD------GDP 730

Query: 829  DPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKL 650
            DPWG+K+  +A      +DPWG+  + SA   +  +DPWG+  + SA   G +DPWG K+
Sbjct: 731  DPWGNKVAHSA---DGDSDPWGNKVAPSA---DGDSDPWGNKVAPSA--YGDSDPWGKKV 782

Query: 649  LPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGE 470
            +  A      +DAWG+  + ++         W    A  +SS                  
Sbjct: 783  VTPAHG---DSDAWGKKTTSSA------VGVWNAGAAQKESSSD---------------- 817

Query: 469  MNSWNKSEG-GGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPG 293
             N+W K  G G  +  G  W+           G   +   + +D WG    V        
Sbjct: 818  -NAWGKQAGVGRSDAAGSSWD-----------GTVVNKESEKSDNWGEACRVVDMGTGAD 865

Query: 292  ADPWGSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKMAATSRDKAQ 137
            ADPWGSK  +   D  G D W         +LE     WG  +  ++ D+ +
Sbjct: 866  ADPWGSK--VKAIDTEGTDSWEKATMPPDNKLEGVSQGWGRPLGKSNEDQGK 915



 Score = 88.6 bits (218), Expect = 4e-15
 Identities = 79/315 (25%), Positives = 130/315 (41%), Gaps = 9/315 (2%)
 Frame = -3

Query: 1033 GLWDGASSSWQVLS--TSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEA----DPW 872
            G W G   +W   +  ++  ++++ V K   E     W S     + D+KP      DPW
Sbjct: 1160 GSW-GGGDNWNATNPPSNQPWSSSGVTKSFGENKPSTWNS-----SKDNKPSVGEQDDPW 1213

Query: 871  GSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSIS 692
             SK +   G    +D W SK+  A  +   G     + +S + G  E+  DPW +    +
Sbjct: 1214 ASKVASIEGKEQQNDTWASKMTSAGAEDNSGGWNTRAKDSCTDGGEERQNDPWANKAGTN 1273

Query: 691  AGDQGGTDPWGSKLLPVARDKEQGADAWGRNISGASTDKEERA-DPWGGKTALGDSSHSD 515
               +  TDPW SK +P +   +    +W  N +   T  EE+A DPW  K     S+ + 
Sbjct: 1274 KDKEQETDPWTSK-VPSSVGSDDNNSSW--NTTAKDTPSEEKAGDPWSSK----GSNDNI 1326

Query: 514  KAFDSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPW 335
            K  DSW   S    + +SW+K     F      W++P            +  + +G    
Sbjct: 1327 KKTDSWGAGSSGGNQESSWSKP---NFSLGDQAWSKPRFG--------DNGGNSRGGFGR 1375

Query: 334  GSKVSVTVRDDKPGADPW--GSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKMA 161
            G +     R+   G   W  G+K   SG ++   +PW+S+   G R   +G    G++  
Sbjct: 1376 GYRGRGRGRNFGDGGSSWNGGNKNDESGGER-SEEPWSSRDLDGGRGRGRGRFGRGDRSQ 1434

Query: 160  ATSRDKAQKTDLWGS 116
             +S   +  +  WGS
Sbjct: 1435 GSSNFGSGDSGSWGS 1449



 Score = 73.6 bits (179), Expect = 3e-10
 Identities = 92/354 (25%), Positives = 133/354 (37%), Gaps = 38/354 (10%)
 Frame = -3

Query: 1057 NGEQTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGD-HKPEA 881
            + ++  GAG WD ++++W   S         V + ++E      G+      GD  KP++
Sbjct: 959  SSDKNGGAGGWDTSAANWNKSSA--------VGEAQEEGWGKGKGASDQAGCGDWEKPKS 1010

Query: 880  ------DPWGSKSSVAAGDLGGSDPWGSK-LVPAARDHKQGADPWGSNNSISAGDCEQGA 722
                    W       A D   S  W         R   +G    G       GD + G 
Sbjct: 1011 FGNDGSSRWNKGEETRADDQNNS--WSKPGNFGGGRGFGRGQ---GRGRGQECGDFD-GR 1064

Query: 721  DPWGSNKSISAGDQGGTDPW--GSKLLPVARDKE--QGADAWGRNISGASTDKEERADPW 554
            +  GS KS   G+  G   W   SK+     D    +G    GR   G      +     
Sbjct: 1065 NDQGSWKSSWGGESAGRTSWRSDSKVDNEVGDSSGYRGRGRGGRGQYGGRGRGRDNGWRN 1124

Query: 553  GGKTALGDSSHSDKAF-DSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRPFVKTTPP-- 383
            G ++  G    +D A   +W     +  + +S NK   GG    GD WN     +  P  
Sbjct: 1125 GDRSDSGFGRENDSADGQNWGNRGSSYWDKDSSNKGSWGG----GDNWNATNPPSNQPWS 1180

Query: 382  TSGISSSDHKQGADPWGSKVSVTVRDDKPGA----DPWGSKPA-LSGEDQGGADPWASKR 218
            +SG++ S  +     W S      +D+KP      DPW SK A + G++Q   D WASK 
Sbjct: 1181 SSGVTKSFGENKPSTWNSS-----KDNKPSVGEQDDPWASKVASIEGKEQQN-DTWASKM 1234

Query: 217  AVGARELEQG------------------DDPWGNKMAATSRDKAQKTDLWGSNV 110
                 E   G                  +DPW NK A T++DK Q+TD W S V
Sbjct: 1235 TSAGAEDNSGGWNTRAKDSCTDGGEERQNDPWANK-AGTNKDKEQETDPWTSKV 1287



 Score = 60.1 bits (144), Expect = 7e-06
 Identities = 81/363 (22%), Positives = 121/363 (33%), Gaps = 74/363 (20%)
 Frame = -3

Query: 979  FANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPA 800
            +AN      ++EQ  DPW SKV  + G     +  W + +     +    DPW SK    
Sbjct: 1266 WANKAGTNKDKEQETDPWTSKVPSSVGSDDNNSS-WNTTAKDTPSEEKAGDPWSSK---G 1321

Query: 799  ARDHKQGADPWGSNNS------------ISAGDCE------------------------- 731
            + D+ +  D WG+ +S             S GD                           
Sbjct: 1322 SNDNIKKTDSWGAGSSGGNQESSWSKPNFSLGDQAWSKPRFGDNGGNSRGGFGRGYRGRG 1381

Query: 730  ------QGADPW-GSNKSISAGDQGGTDPWGSKLLPVARDKEQGADAWGRNISGASTDKE 572
                   G   W G NK+  +G +   +PW S+ L   R + +G    G    G+S    
Sbjct: 1382 RGRNFGDGGSSWNGGNKNDESGGERSEEPWSSRDLDGGRGRGRGRFGRGDRSQGSSNFGS 1441

Query: 571  ERADPWGGKTALGD-SSHSDKAFDSWVKVSGTSGEMNS-WNKSEGGG-----FEKDGDGW 413
              +  WG     GD   + +   ++  +  G  G  +S WN S+G G     F K    W
Sbjct: 1442 GDSGSWGSGRENGDRGGYRNWNGNNEQRSFGQGGGWSSDWNGSKGSGEGGQAFAKSKPSW 1501

Query: 412  NRPFV-------------------KTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPGA 290
                +                   +++P   G  SSD  + +  WG+           G 
Sbjct: 1502 EAQNMSGGDDQAGNSDANKSWSRNRSSPSILGQPSSDANK-SSTWGA-----TSGGAGGG 1555

Query: 289  DPWGSKPALSGEDQGGADPWASKRAVG----ARELEQGDDPWGNKMAATSRDKAQKTDLW 122
              WG     S    GGA   A K + G    A   +  D PWG      S +     D W
Sbjct: 1556 GSWGKSNEDSWNSSGGA---AEKSSWGGGSEAPPKKDDDGPWGKGGEGKSNE-----DSW 1607

Query: 121  GSN 113
             S+
Sbjct: 1608 NSS 1610


>gb|AQK94717.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 925

 Score =  128 bits (321), Expect = 2e-28
 Identities = 104/355 (29%), Positives = 155/355 (43%), Gaps = 5/355 (1%)
 Frame = -3

Query: 1189 DSLVKVITVEEQFLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASS 1010
            DSL+K++TV+   LS+P  + ++ +  P+  FG+Q+    G S  G+ +   GL    S 
Sbjct: 481  DSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTSFFG-SEAGKTSWDNGLPSFGSD 539

Query: 1009 SWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGS 830
            SWQ  S+STL    +VQ    E  ADPW  K S      K ++DPWG K+       G S
Sbjct: 540  SWQPFSSSTL----SVQNAGGESEADPWSKKTSA-----KDDSDPWGKKTD------GDS 584

Query: 829  DPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKL 650
            D WG K           +DPWG   ++SA D +  ++PWG     SA   G +DPWG K+
Sbjct: 585  DRWGKKT-------DGDSDPWG-KEAVSAADGD--SNPWGKETVPSAA--GDSDPWGKKV 632

Query: 649  LPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGE 470
            +  A   +  +D+WG+  + ++ D E+                            G+ G 
Sbjct: 633  VSSA---DGDSDSWGKKATSSAVDTEK---------------------------EGSGG- 661

Query: 469  MNSWNKSEG-GGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPG 293
              +W+K  G GG +  G  W+R  V            +  + +D WG   +  V D   G
Sbjct: 662  -TAWDKQAGVGGSDAAGSSWDRAVV------------NESEKSDNWGE--ACRVMDMGTG 706

Query: 292  A----DPWGSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKMAATSRDKA 140
            A    DPWGSK  +   D  G + W         +LE     WG     ++ D+A
Sbjct: 707  AEADTDPWGSK--VKAVDMEGPNNWEKATVPPNNKLEDVSQGWGQPKGNSTEDQA 759


>gb|AQK94729.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 1022

 Score =  128 bits (321), Expect = 2e-28
 Identities = 104/355 (29%), Positives = 155/355 (43%), Gaps = 5/355 (1%)
 Frame = -3

Query: 1189 DSLVKVITVEEQFLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASS 1010
            DSL+K++TV+   LS+P  + ++ +  P+  FG+Q+    G S  G+ +   GL    S 
Sbjct: 60   DSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTSFFG-SEAGKTSWDNGLPSFGSD 118

Query: 1009 SWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGS 830
            SWQ  S+STL    +VQ    E  ADPW  K S      K ++DPWG K+       G S
Sbjct: 119  SWQPFSSSTL----SVQNAGGESEADPWSKKTSA-----KDDSDPWGKKTD------GDS 163

Query: 829  DPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKL 650
            D WG K           +DPWG   ++SA D +  ++PWG     SA   G +DPWG K+
Sbjct: 164  DRWGKKT-------DGDSDPWG-KEAVSAADGD--SNPWGKETVPSAA--GDSDPWGKKV 211

Query: 649  LPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGE 470
            +  A   +  +D+WG+  + ++ D E+                            G+ G 
Sbjct: 212  VSSA---DGDSDSWGKKATSSAVDTEK---------------------------EGSGG- 240

Query: 469  MNSWNKSEG-GGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPG 293
              +W+K  G GG +  G  W+R  V            +  + +D WG   +  V D   G
Sbjct: 241  -TAWDKQAGVGGSDAAGSSWDRAVV------------NESEKSDNWGE--ACRVMDMGTG 285

Query: 292  A----DPWGSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKMAATSRDKA 140
            A    DPWGSK  +   D  G + W         +LE     WG     ++ D+A
Sbjct: 286  AEADTDPWGSK--VKAVDMEGPNNWEKATVPPNNKLEDVSQGWGQPKGNSTEDQA 338



 Score = 72.8 bits (177), Expect = 5e-10
 Identities = 71/295 (24%), Positives = 111/295 (37%), Gaps = 22/295 (7%)
 Frame = -3

Query: 1063 SGNGEQTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKP- 887
            SG+G +  G G W+  +     + T +   N              W +     + D+KP 
Sbjct: 559  SGDGPKWGGGGNWNATNPPSSSVGTKSYGQNQPFT----------WNN-----SEDNKPS 603

Query: 886  ---EADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGA-- 722
               + DPW SK S        +D W SK++    +   G    G +  +    C  G   
Sbjct: 604  VGEQGDPWASKVSSTEDTEQQNDSWSSKMISGGAEDTSG----GWDTKVKDSSCNDGGEG 659

Query: 721  ---DPWGSNKSISAGDQGGTDPWGSKL-LPVARDKEQGADAWGRNISGASTDKEERADPW 554
               DPW +    + G +  TDPW SK+   V  D ++G  +W     G  + KE+  DPW
Sbjct: 660  LQNDPWANKIGSNEGKEQETDPWASKMSSTVCADDKKG--SWNTTAKGIPS-KEKADDPW 716

Query: 553  GGKTALGDSSHSDKAFDSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRPFVKTTPPTS- 377
              K    DS    K  D+W   S    +  SW+K      +++   WN P        + 
Sbjct: 717  NSKGGNDDS----KKTDTWGAGSSGGDQELSWSKPNFSLGDQEST-WNNPRFSDDDNANN 771

Query: 376  --GISSSDHKQG-----ADPWGSKVSVTVRDDKPG----ADPWGSKPALSGEDQG 245
              G    +  +G      D  GS  +   R+D+ G     +PW  +    G  +G
Sbjct: 772  RGGFGRGNRGRGRGRNFGDGGGSSWNGGNRNDESGGGRSGEPWNRRDFDGGGGRG 826



 Score = 63.9 bits (154), Expect = 4e-07
 Identities = 86/343 (25%), Positives = 115/343 (33%), Gaps = 99/343 (28%)
 Frame = -3

Query: 886  EADPWGSKSSVAAGDLGGSDPWG--------SKLVPAARDHKQGADPWGSNNSISAGDCE 731
            E   WG     + G  GG+  W         S +V  A+D     + WG  N  SA + E
Sbjct: 360  EDGTWGKSKDNSCGGAGGAGGWDVSVGNWNKSSVVADAQD-----EGWGKGNWSSA-ESE 413

Query: 730  QGADPWGSNKSISAGDQGGTDPWGSKLLPVARDKEQGAD---AWGR--NISGAS------ 584
            +  +  G+     A DQ G + W            +G D   +W R  N  G        
Sbjct: 414  ETNNQSGNWNKTGASDQAGYNNWDKPKSFGGNGWNKGDDQNSSWNRPENFGGGRGFGRGQ 473

Query: 583  --------------TDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGT----------- 479
                           D+      WG   A   S  SD   D+    SG            
Sbjct: 474  GRGRGQQSGYFNGRNDQGSWKKSWGSDNAERPSWRSDNQVDNEAGESGGYRGRGRGGRGQ 533

Query: 478  ---SGEMNSWNKSE--GGGFEKD---GDG--------WNRPFVKTTPPTSGISSSDHKQG 347
                G+ N W   +    GF ++   GDG        WN     T PP+S + +  + Q 
Sbjct: 534  YGGRGKDNGWRNDDRSNSGFGRENNSGDGPKWGGGGNWNA----TNPPSSSVGTKSYGQN 589

Query: 346  ------------------ADPWGSKVSVTVRDDKPGADPWGSKPALSG-EDQGGA----- 239
                               DPW SKVS T  D +   D W SK    G ED  G      
Sbjct: 590  QPFTWNNSEDNKPSVGEQGDPWASKVSST-EDTEQQNDSWSSKMISGGAEDTSGGWDTKV 648

Query: 238  --------------DPWASKRAVGARE-LEQGDDPWGNKMAAT 155
                          DPWA+K  +G+ E  EQ  DPW +KM++T
Sbjct: 649  KDSSCNDGGEGLQNDPWANK--IGSNEGKEQETDPWASKMSST 689


>gb|AQK94725.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 1103

 Score =  128 bits (321), Expect = 2e-28
 Identities = 104/355 (29%), Positives = 155/355 (43%), Gaps = 5/355 (1%)
 Frame = -3

Query: 1189 DSLVKVITVEEQFLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASS 1010
            DSL+K++TV+   LS+P  + ++ +  P+  FG+Q+    G S  G+ +   GL    S 
Sbjct: 141  DSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTSFFG-SEAGKTSWDNGLPSFGSD 199

Query: 1009 SWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGS 830
            SWQ  S+STL    +VQ    E  ADPW  K S      K ++DPWG K+       G S
Sbjct: 200  SWQPFSSSTL----SVQNAGGESEADPWSKKTSA-----KDDSDPWGKKTD------GDS 244

Query: 829  DPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKL 650
            D WG K           +DPWG   ++SA D +  ++PWG     SA   G +DPWG K+
Sbjct: 245  DRWGKKT-------DGDSDPWG-KEAVSAADGD--SNPWGKETVPSAA--GDSDPWGKKV 292

Query: 649  LPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGE 470
            +  A   +  +D+WG+  + ++ D E+                            G+ G 
Sbjct: 293  VSSA---DGDSDSWGKKATSSAVDTEK---------------------------EGSGG- 321

Query: 469  MNSWNKSEG-GGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPG 293
              +W+K  G GG +  G  W+R  V            +  + +D WG   +  V D   G
Sbjct: 322  -TAWDKQAGVGGSDAAGSSWDRAVV------------NESEKSDNWGE--ACRVMDMGTG 366

Query: 292  A----DPWGSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKMAATSRDKA 140
            A    DPWGSK  +   D  G + W         +LE     WG     ++ D+A
Sbjct: 367  AEADTDPWGSK--VKAVDMEGPNNWEKATVPPNNKLEDVSQGWGQPKGNSTEDQA 419



 Score = 72.8 bits (177), Expect = 5e-10
 Identities = 71/295 (24%), Positives = 111/295 (37%), Gaps = 22/295 (7%)
 Frame = -3

Query: 1063 SGNGEQTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKP- 887
            SG+G +  G G W+  +     + T +   N              W +     + D+KP 
Sbjct: 640  SGDGPKWGGGGNWNATNPPSSSVGTKSYGQNQPFT----------WNN-----SEDNKPS 684

Query: 886  ---EADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGA-- 722
               + DPW SK S        +D W SK++    +   G    G +  +    C  G   
Sbjct: 685  VGEQGDPWASKVSSTEDTEQQNDSWSSKMISGGAEDTSG----GWDTKVKDSSCNDGGEG 740

Query: 721  ---DPWGSNKSISAGDQGGTDPWGSKL-LPVARDKEQGADAWGRNISGASTDKEERADPW 554
               DPW +    + G +  TDPW SK+   V  D ++G  +W     G  + KE+  DPW
Sbjct: 741  LQNDPWANKIGSNEGKEQETDPWASKMSSTVCADDKKG--SWNTTAKGIPS-KEKADDPW 797

Query: 553  GGKTALGDSSHSDKAFDSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRPFVKTTPPTS- 377
              K    DS    K  D+W   S    +  SW+K      +++   WN P        + 
Sbjct: 798  NSKGGNDDS----KKTDTWGAGSSGGDQELSWSKPNFSLGDQEST-WNNPRFSDDDNANN 852

Query: 376  --GISSSDHKQG-----ADPWGSKVSVTVRDDKPG----ADPWGSKPALSGEDQG 245
              G    +  +G      D  GS  +   R+D+ G     +PW  +    G  +G
Sbjct: 853  RGGFGRGNRGRGRGRNFGDGGGSSWNGGNRNDESGGGRSGEPWNRRDFDGGGGRG 907



 Score = 63.9 bits (154), Expect = 4e-07
 Identities = 86/343 (25%), Positives = 115/343 (33%), Gaps = 99/343 (28%)
 Frame = -3

Query: 886  EADPWGSKSSVAAGDLGGSDPWG--------SKLVPAARDHKQGADPWGSNNSISAGDCE 731
            E   WG     + G  GG+  W         S +V  A+D     + WG  N  SA + E
Sbjct: 441  EDGTWGKSKDNSCGGAGGAGGWDVSVGNWNKSSVVADAQD-----EGWGKGNWSSA-ESE 494

Query: 730  QGADPWGSNKSISAGDQGGTDPWGSKLLPVARDKEQGAD---AWGR--NISGAS------ 584
            +  +  G+     A DQ G + W            +G D   +W R  N  G        
Sbjct: 495  ETNNQSGNWNKTGASDQAGYNNWDKPKSFGGNGWNKGDDQNSSWNRPENFGGGRGFGRGQ 554

Query: 583  --------------TDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGT----------- 479
                           D+      WG   A   S  SD   D+    SG            
Sbjct: 555  GRGRGQQSGYFNGRNDQGSWKKSWGSDNAERPSWRSDNQVDNEAGESGGYRGRGRGGRGQ 614

Query: 478  ---SGEMNSWNKSE--GGGFEKD---GDG--------WNRPFVKTTPPTSGISSSDHKQG 347
                G+ N W   +    GF ++   GDG        WN     T PP+S + +  + Q 
Sbjct: 615  YGGRGKDNGWRNDDRSNSGFGRENNSGDGPKWGGGGNWNA----TNPPSSSVGTKSYGQN 670

Query: 346  ------------------ADPWGSKVSVTVRDDKPGADPWGSKPALSG-EDQGGA----- 239
                               DPW SKVS T  D +   D W SK    G ED  G      
Sbjct: 671  QPFTWNNSEDNKPSVGEQGDPWASKVSST-EDTEQQNDSWSSKMISGGAEDTSGGWDTKV 729

Query: 238  --------------DPWASKRAVGARE-LEQGDDPWGNKMAAT 155
                          DPWA+K  +G+ E  EQ  DPW +KM++T
Sbjct: 730  KDSSCNDGGEGLQNDPWANK--IGSNEGKEQETDPWASKMSST 770


>gb|AQK94713.1| Protein RNA-directed DNA methylation 3 [Zea mays]
 gb|AQK94728.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 1247

 Score =  128 bits (321), Expect = 3e-28
 Identities = 104/355 (29%), Positives = 155/355 (43%), Gaps = 5/355 (1%)
 Frame = -3

Query: 1189 DSLVKVITVEEQFLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASS 1010
            DSL+K++TV+   LS+P  + ++ +  P+  FG+Q+    G S  G+ +   GL    S 
Sbjct: 285  DSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTSFFG-SEAGKTSWDNGLPSFGSD 343

Query: 1009 SWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGS 830
            SWQ  S+STL    +VQ    E  ADPW  K S      K ++DPWG K+       G S
Sbjct: 344  SWQPFSSSTL----SVQNAGGESEADPWSKKTSA-----KDDSDPWGKKTD------GDS 388

Query: 829  DPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKL 650
            D WG K           +DPWG   ++SA D +  ++PWG     SA   G +DPWG K+
Sbjct: 389  DRWGKKT-------DGDSDPWG-KEAVSAADGD--SNPWGKETVPSAA--GDSDPWGKKV 436

Query: 649  LPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGE 470
            +  A   +  +D+WG+  + ++ D E+                            G+ G 
Sbjct: 437  VSSA---DGDSDSWGKKATSSAVDTEK---------------------------EGSGG- 465

Query: 469  MNSWNKSEG-GGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPG 293
              +W+K  G GG +  G  W+R  V            +  + +D WG   +  V D   G
Sbjct: 466  -TAWDKQAGVGGSDAAGSSWDRAVV------------NESEKSDNWGE--ACRVMDMGTG 510

Query: 292  A----DPWGSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKMAATSRDKA 140
            A    DPWGSK  +   D  G + W         +LE     WG     ++ D+A
Sbjct: 511  AEADTDPWGSK--VKAVDMEGPNNWEKATVPPNNKLEDVSQGWGQPKGNSTEDQA 563



 Score = 72.8 bits (177), Expect = 6e-10
 Identities = 71/295 (24%), Positives = 111/295 (37%), Gaps = 22/295 (7%)
 Frame = -3

Query: 1063 SGNGEQTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKP- 887
            SG+G +  G G W+  +     + T +   N              W +     + D+KP 
Sbjct: 784  SGDGPKWGGGGNWNATNPPSSSVGTKSYGQNQPFT----------WNN-----SEDNKPS 828

Query: 886  ---EADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGA-- 722
               + DPW SK S        +D W SK++    +   G    G +  +    C  G   
Sbjct: 829  VGEQGDPWASKVSSTEDTEQQNDSWSSKMISGGAEDTSG----GWDTKVKDSSCNDGGEG 884

Query: 721  ---DPWGSNKSISAGDQGGTDPWGSKL-LPVARDKEQGADAWGRNISGASTDKEERADPW 554
               DPW +    + G +  TDPW SK+   V  D ++G  +W     G  + KE+  DPW
Sbjct: 885  LQNDPWANKIGSNEGKEQETDPWASKMSSTVCADDKKG--SWNTTAKGIPS-KEKADDPW 941

Query: 553  GGKTALGDSSHSDKAFDSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRPFVKTTPPTS- 377
              K    DS    K  D+W   S    +  SW+K      +++   WN P        + 
Sbjct: 942  NSKGGNDDS----KKTDTWGAGSSGGDQELSWSKPNFSLGDQEST-WNNPRFSDDDNANN 996

Query: 376  --GISSSDHKQG-----ADPWGSKVSVTVRDDKPG----ADPWGSKPALSGEDQG 245
              G    +  +G      D  GS  +   R+D+ G     +PW  +    G  +G
Sbjct: 997  RGGFGRGNRGRGRGRNFGDGGGSSWNGGNRNDESGGGRSGEPWNRRDFDGGGGRG 1051



 Score = 63.9 bits (154), Expect = 4e-07
 Identities = 86/343 (25%), Positives = 115/343 (33%), Gaps = 99/343 (28%)
 Frame = -3

Query: 886  EADPWGSKSSVAAGDLGGSDPWG--------SKLVPAARDHKQGADPWGSNNSISAGDCE 731
            E   WG     + G  GG+  W         S +V  A+D     + WG  N  SA + E
Sbjct: 585  EDGTWGKSKDNSCGGAGGAGGWDVSVGNWNKSSVVADAQD-----EGWGKGNWSSA-ESE 638

Query: 730  QGADPWGSNKSISAGDQGGTDPWGSKLLPVARDKEQGAD---AWGR--NISGAS------ 584
            +  +  G+     A DQ G + W            +G D   +W R  N  G        
Sbjct: 639  ETNNQSGNWNKTGASDQAGYNNWDKPKSFGGNGWNKGDDQNSSWNRPENFGGGRGFGRGQ 698

Query: 583  --------------TDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGT----------- 479
                           D+      WG   A   S  SD   D+    SG            
Sbjct: 699  GRGRGQQSGYFNGRNDQGSWKKSWGSDNAERPSWRSDNQVDNEAGESGGYRGRGRGGRGQ 758

Query: 478  ---SGEMNSWNKSE--GGGFEKD---GDG--------WNRPFVKTTPPTSGISSSDHKQG 347
                G+ N W   +    GF ++   GDG        WN     T PP+S + +  + Q 
Sbjct: 759  YGGRGKDNGWRNDDRSNSGFGRENNSGDGPKWGGGGNWNA----TNPPSSSVGTKSYGQN 814

Query: 346  ------------------ADPWGSKVSVTVRDDKPGADPWGSKPALSG-EDQGGA----- 239
                               DPW SKVS T  D +   D W SK    G ED  G      
Sbjct: 815  QPFTWNNSEDNKPSVGEQGDPWASKVSST-EDTEQQNDSWSSKMISGGAEDTSGGWDTKV 873

Query: 238  --------------DPWASKRAVGARE-LEQGDDPWGNKMAAT 155
                          DPWA+K  +G+ E  EQ  DPW +KM++T
Sbjct: 874  KDSSCNDGGEGLQNDPWANK--IGSNEGKEQETDPWASKMSST 914


>ref|XP_008656432.1| protein RNA-directed DNA methylation 3 isoform X2 [Zea mays]
          Length = 1296

 Score =  128 bits (321), Expect = 3e-28
 Identities = 104/355 (29%), Positives = 155/355 (43%), Gaps = 5/355 (1%)
 Frame = -3

Query: 1189 DSLVKVITVEEQFLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASS 1010
            DSL+K++TV+   LS+P  + ++ +  P+  FG+Q+    G S  G+ +   GL    S 
Sbjct: 334  DSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTSFFG-SEAGKTSWDNGLPSFGSD 392

Query: 1009 SWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGS 830
            SWQ  S+STL    +VQ    E  ADPW  K S      K ++DPWG K+       G S
Sbjct: 393  SWQPFSSSTL----SVQNAGGESEADPWSKKTSA-----KDDSDPWGKKTD------GDS 437

Query: 829  DPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKL 650
            D WG K           +DPWG   ++SA D +  ++PWG     SA   G +DPWG K+
Sbjct: 438  DRWGKKT-------DGDSDPWG-KEAVSAADGD--SNPWGKETVPSAA--GDSDPWGKKV 485

Query: 649  LPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGE 470
            +  A   +  +D+WG+  + ++ D E+                            G+ G 
Sbjct: 486  VSSA---DGDSDSWGKKATSSAVDTEK---------------------------EGSGG- 514

Query: 469  MNSWNKSEG-GGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPG 293
              +W+K  G GG +  G  W+R  V            +  + +D WG   +  V D   G
Sbjct: 515  -TAWDKQAGVGGSDAAGSSWDRAVV------------NESEKSDNWGE--ACRVMDMGTG 559

Query: 292  A----DPWGSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKMAATSRDKA 140
            A    DPWGSK  +   D  G + W         +LE     WG     ++ D+A
Sbjct: 560  AEADTDPWGSK--VKAVDMEGPNNWEKATVPPNNKLEDVSQGWGQPKGNSTEDQA 612



 Score = 72.8 bits (177), Expect = 6e-10
 Identities = 71/295 (24%), Positives = 111/295 (37%), Gaps = 22/295 (7%)
 Frame = -3

Query: 1063 SGNGEQTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKP- 887
            SG+G +  G G W+  +     + T +   N              W +     + D+KP 
Sbjct: 833  SGDGPKWGGGGNWNATNPPSSSVGTKSYGQNQPFT----------WNN-----SEDNKPS 877

Query: 886  ---EADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGA-- 722
               + DPW SK S        +D W SK++    +   G    G +  +    C  G   
Sbjct: 878  VGEQGDPWASKVSSTEDTEQQNDSWSSKMISGGAEDTSG----GWDTKVKDSSCNDGGEG 933

Query: 721  ---DPWGSNKSISAGDQGGTDPWGSKL-LPVARDKEQGADAWGRNISGASTDKEERADPW 554
               DPW +    + G +  TDPW SK+   V  D ++G  +W     G  + KE+  DPW
Sbjct: 934  LQNDPWANKIGSNEGKEQETDPWASKMSSTVCADDKKG--SWNTTAKGIPS-KEKADDPW 990

Query: 553  GGKTALGDSSHSDKAFDSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRPFVKTTPPTS- 377
              K    DS    K  D+W   S    +  SW+K      +++   WN P        + 
Sbjct: 991  NSKGGNDDS----KKTDTWGAGSSGGDQELSWSKPNFSLGDQEST-WNNPRFSDDDNANN 1045

Query: 376  --GISSSDHKQG-----ADPWGSKVSVTVRDDKPG----ADPWGSKPALSGEDQG 245
              G    +  +G      D  GS  +   R+D+ G     +PW  +    G  +G
Sbjct: 1046 RGGFGRGNRGRGRGRNFGDGGGSSWNGGNRNDESGGGRSGEPWNRRDFDGGGGRG 1100



 Score = 63.9 bits (154), Expect = 4e-07
 Identities = 86/343 (25%), Positives = 115/343 (33%), Gaps = 99/343 (28%)
 Frame = -3

Query: 886  EADPWGSKSSVAAGDLGGSDPWG--------SKLVPAARDHKQGADPWGSNNSISAGDCE 731
            E   WG     + G  GG+  W         S +V  A+D     + WG  N  SA + E
Sbjct: 634  EDGTWGKSKDNSCGGAGGAGGWDVSVGNWNKSSVVADAQD-----EGWGKGNWSSA-ESE 687

Query: 730  QGADPWGSNKSISAGDQGGTDPWGSKLLPVARDKEQGAD---AWGR--NISGAS------ 584
            +  +  G+     A DQ G + W            +G D   +W R  N  G        
Sbjct: 688  ETNNQSGNWNKTGASDQAGYNNWDKPKSFGGNGWNKGDDQNSSWNRPENFGGGRGFGRGQ 747

Query: 583  --------------TDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGT----------- 479
                           D+      WG   A   S  SD   D+    SG            
Sbjct: 748  GRGRGQQSGYFNGRNDQGSWKKSWGSDNAERPSWRSDNQVDNEAGESGGYRGRGRGGRGQ 807

Query: 478  ---SGEMNSWNKSE--GGGFEKD---GDG--------WNRPFVKTTPPTSGISSSDHKQG 347
                G+ N W   +    GF ++   GDG        WN     T PP+S + +  + Q 
Sbjct: 808  YGGRGKDNGWRNDDRSNSGFGRENNSGDGPKWGGGGNWNA----TNPPSSSVGTKSYGQN 863

Query: 346  ------------------ADPWGSKVSVTVRDDKPGADPWGSKPALSG-EDQGGA----- 239
                               DPW SKVS T  D +   D W SK    G ED  G      
Sbjct: 864  QPFTWNNSEDNKPSVGEQGDPWASKVSST-EDTEQQNDSWSSKMISGGAEDTSGGWDTKV 922

Query: 238  --------------DPWASKRAVGARE-LEQGDDPWGNKMAAT 155
                          DPWA+K  +G+ E  EQ  DPW +KM++T
Sbjct: 923  KDSSCNDGGEGLQNDPWANK--IGSNEGKEQETDPWASKMSST 963


>gb|AQK94716.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 1564

 Score =  128 bits (321), Expect = 3e-28
 Identities = 104/355 (29%), Positives = 155/355 (43%), Gaps = 5/355 (1%)
 Frame = -3

Query: 1189 DSLVKVITVEEQFLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASS 1010
            DSL+K++TV+   LS+P  + ++ +  P+  FG+Q+    G S  G+ +   GL    S 
Sbjct: 602  DSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTSFFG-SEAGKTSWDNGLPSFGSD 660

Query: 1009 SWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGS 830
            SWQ  S+STL    +VQ    E  ADPW  K S      K ++DPWG K+       G S
Sbjct: 661  SWQPFSSSTL----SVQNAGGESEADPWSKKTSA-----KDDSDPWGKKTD------GDS 705

Query: 829  DPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKL 650
            D WG K           +DPWG   ++SA D +  ++PWG     SA   G +DPWG K+
Sbjct: 706  DRWGKKT-------DGDSDPWG-KEAVSAADGD--SNPWGKETVPSAA--GDSDPWGKKV 753

Query: 649  LPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGE 470
            +  A   +  +D+WG+  + ++ D E+                            G+ G 
Sbjct: 754  VSSA---DGDSDSWGKKATSSAVDTEK---------------------------EGSGG- 782

Query: 469  MNSWNKSEG-GGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPG 293
              +W+K  G GG +  G  W+R  V            +  + +D WG   +  V D   G
Sbjct: 783  -TAWDKQAGVGGSDAAGSSWDRAVV------------NESEKSDNWGE--ACRVMDMGTG 827

Query: 292  A----DPWGSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKMAATSRDKA 140
            A    DPWGSK  +   D  G + W         +LE     WG     ++ D+A
Sbjct: 828  AEADTDPWGSK--VKAVDMEGPNNWEKATVPPNNKLEDVSQGWGQPKGNSTEDQA 880



 Score = 72.8 bits (177), Expect = 6e-10
 Identities = 71/295 (24%), Positives = 111/295 (37%), Gaps = 22/295 (7%)
 Frame = -3

Query: 1063 SGNGEQTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKP- 887
            SG+G +  G G W+  +     + T +   N              W +     + D+KP 
Sbjct: 1101 SGDGPKWGGGGNWNATNPPSSSVGTKSYGQNQPFT----------WNN-----SEDNKPS 1145

Query: 886  ---EADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGA-- 722
               + DPW SK S        +D W SK++    +   G    G +  +    C  G   
Sbjct: 1146 VGEQGDPWASKVSSTEDTEQQNDSWSSKMISGGAEDTSG----GWDTKVKDSSCNDGGEG 1201

Query: 721  ---DPWGSNKSISAGDQGGTDPWGSKL-LPVARDKEQGADAWGRNISGASTDKEERADPW 554
               DPW +    + G +  TDPW SK+   V  D ++G  +W     G  + KE+  DPW
Sbjct: 1202 LQNDPWANKIGSNEGKEQETDPWASKMSSTVCADDKKG--SWNTTAKGIPS-KEKADDPW 1258

Query: 553  GGKTALGDSSHSDKAFDSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRPFVKTTPPTS- 377
              K    DS    K  D+W   S    +  SW+K      +++   WN P        + 
Sbjct: 1259 NSKGGNDDS----KKTDTWGAGSSGGDQELSWSKPNFSLGDQEST-WNNPRFSDDDNANN 1313

Query: 376  --GISSSDHKQG-----ADPWGSKVSVTVRDDKPG----ADPWGSKPALSGEDQG 245
              G    +  +G      D  GS  +   R+D+ G     +PW  +    G  +G
Sbjct: 1314 RGGFGRGNRGRGRGRNFGDGGGSSWNGGNRNDESGGGRSGEPWNRRDFDGGGGRG 1368



 Score = 63.9 bits (154), Expect = 4e-07
 Identities = 86/343 (25%), Positives = 115/343 (33%), Gaps = 99/343 (28%)
 Frame = -3

Query: 886  EADPWGSKSSVAAGDLGGSDPWG--------SKLVPAARDHKQGADPWGSNNSISAGDCE 731
            E   WG     + G  GG+  W         S +V  A+D     + WG  N  SA + E
Sbjct: 902  EDGTWGKSKDNSCGGAGGAGGWDVSVGNWNKSSVVADAQD-----EGWGKGNWSSA-ESE 955

Query: 730  QGADPWGSNKSISAGDQGGTDPWGSKLLPVARDKEQGAD---AWGR--NISGAS------ 584
            +  +  G+     A DQ G + W            +G D   +W R  N  G        
Sbjct: 956  ETNNQSGNWNKTGASDQAGYNNWDKPKSFGGNGWNKGDDQNSSWNRPENFGGGRGFGRGQ 1015

Query: 583  --------------TDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGT----------- 479
                           D+      WG   A   S  SD   D+    SG            
Sbjct: 1016 GRGRGQQSGYFNGRNDQGSWKKSWGSDNAERPSWRSDNQVDNEAGESGGYRGRGRGGRGQ 1075

Query: 478  ---SGEMNSWNKSE--GGGFEKD---GDG--------WNRPFVKTTPPTSGISSSDHKQG 347
                G+ N W   +    GF ++   GDG        WN     T PP+S + +  + Q 
Sbjct: 1076 YGGRGKDNGWRNDDRSNSGFGRENNSGDGPKWGGGGNWNA----TNPPSSSVGTKSYGQN 1131

Query: 346  ------------------ADPWGSKVSVTVRDDKPGADPWGSKPALSG-EDQGGA----- 239
                               DPW SKVS T  D +   D W SK    G ED  G      
Sbjct: 1132 QPFTWNNSEDNKPSVGEQGDPWASKVSST-EDTEQQNDSWSSKMISGGAEDTSGGWDTKV 1190

Query: 238  --------------DPWASKRAVGARE-LEQGDDPWGNKMAAT 155
                          DPWA+K  +G+ E  EQ  DPW +KM++T
Sbjct: 1191 KDSSCNDGGEGLQNDPWANK--IGSNEGKEQETDPWASKMSST 1231


>ref|XP_008656431.1| protein RNA-directed DNA methylation 3 isoform X1 [Zea mays]
 gb|AQK94714.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 1592

 Score =  128 bits (321), Expect = 3e-28
 Identities = 104/355 (29%), Positives = 155/355 (43%), Gaps = 5/355 (1%)
 Frame = -3

Query: 1189 DSLVKVITVEEQFLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASS 1010
            DSL+K++TV+   LS+P  + ++ +  P+  FG+Q+    G S  G+ +   GL    S 
Sbjct: 630  DSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTSFFG-SEAGKTSWDNGLPSFGSD 688

Query: 1009 SWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGS 830
            SWQ  S+STL    +VQ    E  ADPW  K S      K ++DPWG K+       G S
Sbjct: 689  SWQPFSSSTL----SVQNAGGESEADPWSKKTSA-----KDDSDPWGKKTD------GDS 733

Query: 829  DPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKL 650
            D WG K           +DPWG   ++SA D +  ++PWG     SA   G +DPWG K+
Sbjct: 734  DRWGKKT-------DGDSDPWG-KEAVSAADGD--SNPWGKETVPSAA--GDSDPWGKKV 781

Query: 649  LPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGE 470
            +  A   +  +D+WG+  + ++ D E+                            G+ G 
Sbjct: 782  VSSA---DGDSDSWGKKATSSAVDTEK---------------------------EGSGG- 810

Query: 469  MNSWNKSEG-GGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPG 293
              +W+K  G GG +  G  W+R  V            +  + +D WG   +  V D   G
Sbjct: 811  -TAWDKQAGVGGSDAAGSSWDRAVV------------NESEKSDNWGE--ACRVMDMGTG 855

Query: 292  A----DPWGSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKMAATSRDKA 140
            A    DPWGSK  +   D  G + W         +LE     WG     ++ D+A
Sbjct: 856  AEADTDPWGSK--VKAVDMEGPNNWEKATVPPNNKLEDVSQGWGQPKGNSTEDQA 908



 Score = 72.8 bits (177), Expect = 6e-10
 Identities = 71/295 (24%), Positives = 111/295 (37%), Gaps = 22/295 (7%)
 Frame = -3

Query: 1063 SGNGEQTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKP- 887
            SG+G +  G G W+  +     + T +   N              W +     + D+KP 
Sbjct: 1129 SGDGPKWGGGGNWNATNPPSSSVGTKSYGQNQPFT----------WNN-----SEDNKPS 1173

Query: 886  ---EADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGA-- 722
               + DPW SK S        +D W SK++    +   G    G +  +    C  G   
Sbjct: 1174 VGEQGDPWASKVSSTEDTEQQNDSWSSKMISGGAEDTSG----GWDTKVKDSSCNDGGEG 1229

Query: 721  ---DPWGSNKSISAGDQGGTDPWGSKL-LPVARDKEQGADAWGRNISGASTDKEERADPW 554
               DPW +    + G +  TDPW SK+   V  D ++G  +W     G  + KE+  DPW
Sbjct: 1230 LQNDPWANKIGSNEGKEQETDPWASKMSSTVCADDKKG--SWNTTAKGIPS-KEKADDPW 1286

Query: 553  GGKTALGDSSHSDKAFDSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRPFVKTTPPTS- 377
              K    DS    K  D+W   S    +  SW+K      +++   WN P        + 
Sbjct: 1287 NSKGGNDDS----KKTDTWGAGSSGGDQELSWSKPNFSLGDQEST-WNNPRFSDDDNANN 1341

Query: 376  --GISSSDHKQG-----ADPWGSKVSVTVRDDKPG----ADPWGSKPALSGEDQG 245
              G    +  +G      D  GS  +   R+D+ G     +PW  +    G  +G
Sbjct: 1342 RGGFGRGNRGRGRGRNFGDGGGSSWNGGNRNDESGGGRSGEPWNRRDFDGGGGRG 1396



 Score = 63.9 bits (154), Expect = 4e-07
 Identities = 86/343 (25%), Positives = 115/343 (33%), Gaps = 99/343 (28%)
 Frame = -3

Query: 886  EADPWGSKSSVAAGDLGGSDPWG--------SKLVPAARDHKQGADPWGSNNSISAGDCE 731
            E   WG     + G  GG+  W         S +V  A+D     + WG  N  SA + E
Sbjct: 930  EDGTWGKSKDNSCGGAGGAGGWDVSVGNWNKSSVVADAQD-----EGWGKGNWSSA-ESE 983

Query: 730  QGADPWGSNKSISAGDQGGTDPWGSKLLPVARDKEQGAD---AWGR--NISGAS------ 584
            +  +  G+     A DQ G + W            +G D   +W R  N  G        
Sbjct: 984  ETNNQSGNWNKTGASDQAGYNNWDKPKSFGGNGWNKGDDQNSSWNRPENFGGGRGFGRGQ 1043

Query: 583  --------------TDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGT----------- 479
                           D+      WG   A   S  SD   D+    SG            
Sbjct: 1044 GRGRGQQSGYFNGRNDQGSWKKSWGSDNAERPSWRSDNQVDNEAGESGGYRGRGRGGRGQ 1103

Query: 478  ---SGEMNSWNKSE--GGGFEKD---GDG--------WNRPFVKTTPPTSGISSSDHKQG 347
                G+ N W   +    GF ++   GDG        WN     T PP+S + +  + Q 
Sbjct: 1104 YGGRGKDNGWRNDDRSNSGFGRENNSGDGPKWGGGGNWNA----TNPPSSSVGTKSYGQN 1159

Query: 346  ------------------ADPWGSKVSVTVRDDKPGADPWGSKPALSG-EDQGGA----- 239
                               DPW SKVS T  D +   D W SK    G ED  G      
Sbjct: 1160 QPFTWNNSEDNKPSVGEQGDPWASKVSST-EDTEQQNDSWSSKMISGGAEDTSGGWDTKV 1218

Query: 238  --------------DPWASKRAVGARE-LEQGDDPWGNKMAAT 155
                          DPWA+K  +G+ E  EQ  DPW +KM++T
Sbjct: 1219 KDSSCNDGGEGLQNDPWANK--IGSNEGKEQETDPWASKMSST 1259


>gb|AQK87063.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 587

 Score =  123 bits (308), Expect = 6e-27
 Identities = 103/352 (29%), Positives = 144/352 (40%), Gaps = 1/352 (0%)
 Frame = -3

Query: 1189 DSLVKVITVEEQFLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASS 1010
            DSL+K++TV+   LS+P  + ++ +  P+  FG+Q+    G S  G+ +   GL    S 
Sbjct: 141  DSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTPFFG-SEAGKTSWDRGLPSFGSD 199

Query: 1009 SWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGS 830
            SWQ  S+STL     VQ    E  ADPW  K S      + ++DPWG K+       G S
Sbjct: 200  SWQPFSSSTL----PVQNAGAESEADPWCKKTSA-----EDDSDPWGKKTD------GDS 244

Query: 829  DPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKL 650
            DPWG + V AA                  GDC    +PWG     SA   G +DPWG K+
Sbjct: 245  DPWGKEAVSAA-----------------DGDC----NPWGKETVPSAA--GDSDPWGKKV 281

Query: 649  LPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGE 470
                 D                      +DPWG K     SS  +    S  +  G+SG 
Sbjct: 282  FSADGD----------------------SDPWGKKAI---SSAVEVWNTSATQKEGSSG- 315

Query: 469  MNSWNKSEG-GGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPG 293
             N+W+K  G GG +  G  W+R  V           +   + +D WG    V        
Sbjct: 316  -NAWDKQAGVGGSDAAGSSWDRAVV-----------NKESEKSDNWGEACRVMDMGTGAD 363

Query: 292  ADPWGSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKMAATSRDKAQ 137
             DPWGSK  +   D  G + W         +LE     W      ++ D+A+
Sbjct: 364  TDPWGSK--VKAVDMEGPNSWEKATMPPDNKLEDVSQGWNQHKGNSTEDQAK 413



 Score = 71.2 bits (173), Expect = 1e-09
 Identities = 74/249 (29%), Positives = 100/249 (40%), Gaps = 16/249 (6%)
 Frame = -3

Query: 808 VPAAR-DHKQGA--DPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKLLPVA 638
           VPA R D+  GA    +GS ++   G  E G   W  ++ + +       P+ S  LPV 
Sbjct: 156 VPANRGDNLSGAPASKFGSQDTPFFGS-EAGKTSW--DRGLPSFGSDSWQPFSSSTLPVQ 212

Query: 637 R-DKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVK--VSGTSGEM 467
               E  AD W +      T  E+ +DPWG KT  GDS       D W K  VS   G+ 
Sbjct: 213 NAGAESEADPWCKK-----TSAEDDSDPWGKKTD-GDS-------DPWGKEAVSAADGDC 259

Query: 466 NSWNKSEGGGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKV----------SV 317
           N W K        D D W +           + S+D    +DPWG K           S 
Sbjct: 260 NPWGKETVPSAAGDSDPWGKK----------VFSADGD--SDPWGKKAISSAVEVWNTSA 307

Query: 316 TVRDDKPGADPWGSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKMAATSRDKAQ 137
           T ++   G + W  +  + G D  G+  W   RAV  +E E+ D+ WG            
Sbjct: 308 TQKEGSSG-NAWDKQAGVGGSDAAGSS-W--DRAVVNKESEKSDN-WGEACRVMDMGTGA 362

Query: 136 KTDLWGSNV 110
            TD WGS V
Sbjct: 363 DTDPWGSKV 371


>gb|AQK87074.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 1450

 Score =  123 bits (308), Expect = 1e-26
 Identities = 103/352 (29%), Positives = 144/352 (40%), Gaps = 1/352 (0%)
 Frame = -3

Query: 1189 DSLVKVITVEEQFLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASS 1010
            DSL+K++TV+   LS+P  + ++ +  P+  FG+Q+    G S  G+ +   GL    S 
Sbjct: 481  DSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTPFFG-SEAGKTSWDRGLPSFGSD 539

Query: 1009 SWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGS 830
            SWQ  S+STL     VQ    E  ADPW  K S      + ++DPWG K+       G S
Sbjct: 540  SWQPFSSSTL----PVQNAGAESEADPWCKKTSA-----EDDSDPWGKKTD------GDS 584

Query: 829  DPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKL 650
            DPWG + V AA                  GDC    +PWG     SA   G +DPWG K+
Sbjct: 585  DPWGKEAVSAA-----------------DGDC----NPWGKETVPSAA--GDSDPWGKKV 621

Query: 649  LPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGE 470
                 D                      +DPWG K     SS  +    S  +  G+SG 
Sbjct: 622  FSADGD----------------------SDPWGKKAI---SSAVEVWNTSATQKEGSSG- 655

Query: 469  MNSWNKSEG-GGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPG 293
             N+W+K  G GG +  G  W+R  V           +   + +D WG    V        
Sbjct: 656  -NAWDKQAGVGGSDAAGSSWDRAVV-----------NKESEKSDNWGEACRVMDMGTGAD 703

Query: 292  ADPWGSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKMAATSRDKAQ 137
             DPWGSK  +   D  G + W         +LE     W      ++ D+A+
Sbjct: 704  TDPWGSK--VKAVDMEGPNSWEKATMPPDNKLEDVSQGWNQHKGNSTEDQAK 753



 Score = 71.2 bits (173), Expect = 2e-09
 Identities = 74/249 (29%), Positives = 100/249 (40%), Gaps = 16/249 (6%)
 Frame = -3

Query: 808  VPAAR-DHKQGA--DPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKLLPVA 638
            VPA R D+  GA    +GS ++   G  E G   W  ++ + +       P+ S  LPV 
Sbjct: 496  VPANRGDNLSGAPASKFGSQDTPFFGS-EAGKTSW--DRGLPSFGSDSWQPFSSSTLPVQ 552

Query: 637  R-DKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVK--VSGTSGEM 467
                E  AD W +      T  E+ +DPWG KT  GDS       D W K  VS   G+ 
Sbjct: 553  NAGAESEADPWCKK-----TSAEDDSDPWGKKTD-GDS-------DPWGKEAVSAADGDC 599

Query: 466  NSWNKSEGGGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKV----------SV 317
            N W K        D D W +           + S+D    +DPWG K           S 
Sbjct: 600  NPWGKETVPSAAGDSDPWGKK----------VFSADGD--SDPWGKKAISSAVEVWNTSA 647

Query: 316  TVRDDKPGADPWGSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKMAATSRDKAQ 137
            T ++   G + W  +  + G D  G+  W   RAV  +E E+ D+ WG            
Sbjct: 648  TQKEGSSG-NAWDKQAGVGGSDAAGSS-W--DRAVVNKESEKSDN-WGEACRVMDMGTGA 702

Query: 136  KTDLWGSNV 110
             TD WGS V
Sbjct: 703  DTDPWGSKV 711



 Score = 68.9 bits (167), Expect = 1e-08
 Identities = 69/260 (26%), Positives = 102/260 (39%), Gaps = 13/260 (5%)
 Frame = -3

Query: 898  DHKP----EADPWGSKSSVAAGDLGGSDPWGSKLVP-AARDHKQGADPWGSNNSISAGDC 734
            D+KP    + DPW SK S   G    +D W SK+    A D   G D     +S + G  
Sbjct: 1000 DNKPSVGEQGDPWASKVSSTEGKGQQNDSWSSKMTSRGAEDTSGGWDSKEKGSSCNGGGE 1059

Query: 733  EQGADPWGSNKSISAGDQGGTDPWGSKL-LPVARDKEQGADAWGRNISGASTDKEERADP 557
                DPW +    + G +   DPW SK+   V  D + G   W     G +   E+  DP
Sbjct: 1060 GLQNDPWANKIGSNEGKEQEADPWASKMSSAVGADDKNG--TWDTTTKG-TLSNEKADDP 1116

Query: 556  WGGKTALGDSSHSDKAFDSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRPFVKTTPPTS 377
            W  K    D S   K  D+W   S    + +SW+K      +++   WN        P  
Sbjct: 1117 WNSKRGNDDDS---KKTDAWGAGSSGGNQESSWSKPIFSLGDQE-PTWNN-------PRF 1165

Query: 376  GISSSDHKQGADPWGSKVSVTVRD--DKPGADPWGSKPALSGEDQGG--ADPWASKRAVG 209
            G   + + +G    G++     R      G   W ++   +GE  GG   +PW  +   G
Sbjct: 1166 GDDDNVNNRGGFGRGNQGRGRGRSFGGGGGGSSW-NESNKNGESGGGRSGEPWNRRGFDG 1224

Query: 208  AR---ELEQGDDPWGNKMAA 158
             R      +GD   GN + +
Sbjct: 1225 GRGRGRFGRGDRNQGNNLGS 1244


>gb|AQK87069.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 1572

 Score =  123 bits (308), Expect = 1e-26
 Identities = 103/352 (29%), Positives = 144/352 (40%), Gaps = 1/352 (0%)
 Frame = -3

Query: 1189 DSLVKVITVEEQFLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASS 1010
            DSL+K++TV+   LS+P  + ++ +  P+  FG+Q+    G S  G+ +   GL    S 
Sbjct: 603  DSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTPFFG-SEAGKTSWDRGLPSFGSD 661

Query: 1009 SWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGS 830
            SWQ  S+STL     VQ    E  ADPW  K S      + ++DPWG K+       G S
Sbjct: 662  SWQPFSSSTL----PVQNAGAESEADPWCKKTSA-----EDDSDPWGKKTD------GDS 706

Query: 829  DPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKL 650
            DPWG + V AA                  GDC    +PWG     SA   G +DPWG K+
Sbjct: 707  DPWGKEAVSAA-----------------DGDC----NPWGKETVPSAA--GDSDPWGKKV 743

Query: 649  LPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGE 470
                 D                      +DPWG K     SS  +    S  +  G+SG 
Sbjct: 744  FSADGD----------------------SDPWGKKAI---SSAVEVWNTSATQKEGSSG- 777

Query: 469  MNSWNKSEG-GGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPG 293
             N+W+K  G GG +  G  W+R  V           +   + +D WG    V        
Sbjct: 778  -NAWDKQAGVGGSDAAGSSWDRAVV-----------NKESEKSDNWGEACRVMDMGTGAD 825

Query: 292  ADPWGSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKMAATSRDKAQ 137
             DPWGSK  +   D  G + W         +LE     W      ++ D+A+
Sbjct: 826  TDPWGSK--VKAVDMEGPNSWEKATMPPDNKLEDVSQGWNQHKGNSTEDQAK 875



 Score = 71.2 bits (173), Expect = 2e-09
 Identities = 74/249 (29%), Positives = 100/249 (40%), Gaps = 16/249 (6%)
 Frame = -3

Query: 808  VPAAR-DHKQGA--DPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKLLPVA 638
            VPA R D+  GA    +GS ++   G  E G   W  ++ + +       P+ S  LPV 
Sbjct: 618  VPANRGDNLSGAPASKFGSQDTPFFGS-EAGKTSW--DRGLPSFGSDSWQPFSSSTLPVQ 674

Query: 637  R-DKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVK--VSGTSGEM 467
                E  AD W +      T  E+ +DPWG KT  GDS       D W K  VS   G+ 
Sbjct: 675  NAGAESEADPWCKK-----TSAEDDSDPWGKKTD-GDS-------DPWGKEAVSAADGDC 721

Query: 466  NSWNKSEGGGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKV----------SV 317
            N W K        D D W +           + S+D    +DPWG K           S 
Sbjct: 722  NPWGKETVPSAAGDSDPWGKK----------VFSADGD--SDPWGKKAISSAVEVWNTSA 769

Query: 316  TVRDDKPGADPWGSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKMAATSRDKAQ 137
            T ++   G + W  +  + G D  G+  W   RAV  +E E+ D+ WG            
Sbjct: 770  TQKEGSSG-NAWDKQAGVGGSDAAGSS-W--DRAVVNKESEKSDN-WGEACRVMDMGTGA 824

Query: 136  KTDLWGSNV 110
             TD WGS V
Sbjct: 825  DTDPWGSKV 833



 Score = 68.9 bits (167), Expect = 1e-08
 Identities = 69/260 (26%), Positives = 102/260 (39%), Gaps = 13/260 (5%)
 Frame = -3

Query: 898  DHKP----EADPWGSKSSVAAGDLGGSDPWGSKLVP-AARDHKQGADPWGSNNSISAGDC 734
            D+KP    + DPW SK S   G    +D W SK+    A D   G D     +S + G  
Sbjct: 1122 DNKPSVGEQGDPWASKVSSTEGKGQQNDSWSSKMTSRGAEDTSGGWDSKEKGSSCNGGGE 1181

Query: 733  EQGADPWGSNKSISAGDQGGTDPWGSKL-LPVARDKEQGADAWGRNISGASTDKEERADP 557
                DPW +    + G +   DPW SK+   V  D + G   W     G +   E+  DP
Sbjct: 1182 GLQNDPWANKIGSNEGKEQEADPWASKMSSAVGADDKNG--TWDTTTKG-TLSNEKADDP 1238

Query: 556  WGGKTALGDSSHSDKAFDSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRPFVKTTPPTS 377
            W  K    D S   K  D+W   S    + +SW+K      +++   WN        P  
Sbjct: 1239 WNSKRGNDDDS---KKTDAWGAGSSGGNQESSWSKPIFSLGDQE-PTWNN-------PRF 1287

Query: 376  GISSSDHKQGADPWGSKVSVTVRD--DKPGADPWGSKPALSGEDQGG--ADPWASKRAVG 209
            G   + + +G    G++     R      G   W ++   +GE  GG   +PW  +   G
Sbjct: 1288 GDDDNVNNRGGFGRGNQGRGRGRSFGGGGGGSSW-NESNKNGESGGGRSGEPWNRRGFDG 1346

Query: 208  AR---ELEQGDDPWGNKMAA 158
             R      +GD   GN + +
Sbjct: 1347 GRGRGRFGRGDRNQGNNLGS 1366


>ref|XP_020395199.1| protein RNA-directed DNA methylation 3 [Zea mays]
 gb|AQK87066.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 1600

 Score =  123 bits (308), Expect = 1e-26
 Identities = 103/352 (29%), Positives = 144/352 (40%), Gaps = 1/352 (0%)
 Frame = -3

Query: 1189 DSLVKVITVEEQFLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASS 1010
            DSL+K++TV+   LS+P  + ++ +  P+  FG+Q+    G S  G+ +   GL    S 
Sbjct: 631  DSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTPFFG-SEAGKTSWDRGLPSFGSD 689

Query: 1009 SWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGS 830
            SWQ  S+STL     VQ    E  ADPW  K S      + ++DPWG K+       G S
Sbjct: 690  SWQPFSSSTL----PVQNAGAESEADPWCKKTSA-----EDDSDPWGKKTD------GDS 734

Query: 829  DPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKL 650
            DPWG + V AA                  GDC    +PWG     SA   G +DPWG K+
Sbjct: 735  DPWGKEAVSAA-----------------DGDC----NPWGKETVPSAA--GDSDPWGKKV 771

Query: 649  LPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGE 470
                 D                      +DPWG K     SS  +    S  +  G+SG 
Sbjct: 772  FSADGD----------------------SDPWGKKAI---SSAVEVWNTSATQKEGSSG- 805

Query: 469  MNSWNKSEG-GGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPG 293
             N+W+K  G GG +  G  W+R  V           +   + +D WG    V        
Sbjct: 806  -NAWDKQAGVGGSDAAGSSWDRAVV-----------NKESEKSDNWGEACRVMDMGTGAD 853

Query: 292  ADPWGSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKMAATSRDKAQ 137
             DPWGSK  +   D  G + W         +LE     W      ++ D+A+
Sbjct: 854  TDPWGSK--VKAVDMEGPNSWEKATMPPDNKLEDVSQGWNQHKGNSTEDQAK 903



 Score = 71.2 bits (173), Expect = 2e-09
 Identities = 74/249 (29%), Positives = 100/249 (40%), Gaps = 16/249 (6%)
 Frame = -3

Query: 808  VPAAR-DHKQGA--DPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKLLPVA 638
            VPA R D+  GA    +GS ++   G  E G   W  ++ + +       P+ S  LPV 
Sbjct: 646  VPANRGDNLSGAPASKFGSQDTPFFGS-EAGKTSW--DRGLPSFGSDSWQPFSSSTLPVQ 702

Query: 637  R-DKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVK--VSGTSGEM 467
                E  AD W +      T  E+ +DPWG KT  GDS       D W K  VS   G+ 
Sbjct: 703  NAGAESEADPWCKK-----TSAEDDSDPWGKKTD-GDS-------DPWGKEAVSAADGDC 749

Query: 466  NSWNKSEGGGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKV----------SV 317
            N W K        D D W +           + S+D    +DPWG K           S 
Sbjct: 750  NPWGKETVPSAAGDSDPWGKK----------VFSADGD--SDPWGKKAISSAVEVWNTSA 797

Query: 316  TVRDDKPGADPWGSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKMAATSRDKAQ 137
            T ++   G + W  +  + G D  G+  W   RAV  +E E+ D+ WG            
Sbjct: 798  TQKEGSSG-NAWDKQAGVGGSDAAGSS-W--DRAVVNKESEKSDN-WGEACRVMDMGTGA 852

Query: 136  KTDLWGSNV 110
             TD WGS V
Sbjct: 853  DTDPWGSKV 861



 Score = 68.9 bits (167), Expect = 1e-08
 Identities = 69/260 (26%), Positives = 102/260 (39%), Gaps = 13/260 (5%)
 Frame = -3

Query: 898  DHKP----EADPWGSKSSVAAGDLGGSDPWGSKLVP-AARDHKQGADPWGSNNSISAGDC 734
            D+KP    + DPW SK S   G    +D W SK+    A D   G D     +S + G  
Sbjct: 1150 DNKPSVGEQGDPWASKVSSTEGKGQQNDSWSSKMTSRGAEDTSGGWDSKEKGSSCNGGGE 1209

Query: 733  EQGADPWGSNKSISAGDQGGTDPWGSKL-LPVARDKEQGADAWGRNISGASTDKEERADP 557
                DPW +    + G +   DPW SK+   V  D + G   W     G +   E+  DP
Sbjct: 1210 GLQNDPWANKIGSNEGKEQEADPWASKMSSAVGADDKNG--TWDTTTKG-TLSNEKADDP 1266

Query: 556  WGGKTALGDSSHSDKAFDSWVKVSGTSGEMNSWNKSEGGGFEKDGDGWNRPFVKTTPPTS 377
            W  K    D S   K  D+W   S    + +SW+K      +++   WN        P  
Sbjct: 1267 WNSKRGNDDDS---KKTDAWGAGSSGGNQESSWSKPIFSLGDQE-PTWNN-------PRF 1315

Query: 376  GISSSDHKQGADPWGSKVSVTVRD--DKPGADPWGSKPALSGEDQGG--ADPWASKRAVG 209
            G   + + +G    G++     R      G   W ++   +GE  GG   +PW  +   G
Sbjct: 1316 GDDDNVNNRGGFGRGNQGRGRGRSFGGGGGGSSW-NESNKNGESGGGRSGEPWNRRGFDG 1374

Query: 208  AR---ELEQGDDPWGNKMAA 158
             R      +GD   GN + +
Sbjct: 1375 GRGRGRFGRGDRNQGNNLGS 1394


>ref|XP_006654614.2| PREDICTED: protein RNA-directed DNA methylation 3 [Oryza brachyantha]
          Length = 1385

 Score =  120 bits (300), Expect = 1e-25
 Identities = 113/411 (27%), Positives = 171/411 (41%), Gaps = 53/411 (12%)
 Frame = -3

Query: 1189 DSLVKVITVEEQFLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASS 1010
            DSL+K++TV+ +FLS+P  + ++++  P+  FG++           + +   GL    S 
Sbjct: 561  DSLLKIVTVQAEFLSVPAKRGDNSSGAPTGPFGSEA---------DKPSWNNGLPSFGSD 611

Query: 1009 SWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGS 830
            SWQ  S+S L     V+  + +  ADPW  K +  A D    +DPWG K+  A+ ++   
Sbjct: 612  SWQPFSSSAL----PVENADGDSEADPWCKKTTSTAND----SDPWGMKTKSASLEV--- 660

Query: 829  DPWGSKLVPAARDHKQGAD--PWGSNNSISAG-------DCEQG-ADPWGSNKSISAGDQ 680
              W +      +      D  P GS ++I          D E G +D WG          
Sbjct: 661  --WNNSTTQKEKSSDDAWDKQPGGSGSNIGGSSWDRTTVDKESGKSDSWGEACKEMDKTA 718

Query: 679  GGTDPWGSKLLPV--------------ARDKEQGADAWGRNISGASTDKEERADPWGG-K 545
              TDPWGSK+  V                  E+ +  WG+ I  ++ D+E+ A+  G   
Sbjct: 719  SDTDPWGSKVKEVDLKETDNWGKSSMQPEKSEENSHGWGQPIGRSNRDQEKVAEKSGAWD 778

Query: 544  TALGDSSHSDKAF---DSWVKVSGTSGEMNSWNKSEGGGFEKDGD---GWNRPFVKTTPP 383
            T +  SS S       DSWVK        ++W KS+    +K  D   GWN    +T+  
Sbjct: 779  TVIAGSSSSAPGIGDGDSWVKTDTFPVAQDAWGKSK----DKSSDGAAGWNE---RTSNQ 831

Query: 382  TSGIS------SSDHKQGADPWGSKVSVTVRDDKPGAD-------------PWGSKPALS 260
            + G +      SSD     D WG     T + D+   +             PW S     
Sbjct: 832  SHGTAAGNWNKSSDVDGEKDAWGKAKDTTTKSDEKNNEGGNWNAPNSSIDQPWSSSRGTK 891

Query: 259  GEDQGGADPWAS---KRAVGARELEQGDDPWGNKMAATSRDKAQKTDLWGS 116
              D+  A  W S   K+  G +  EQG D W +KM  TS     K+D WG+
Sbjct: 892  SSDENRASTWNSSEDKKPSGGQ--EQG-DAWTSKM--TSAGAEDKSDGWGT 937



 Score = 62.4 bits (150), Expect = 1e-06
 Identities = 95/401 (23%), Positives = 142/401 (35%), Gaps = 75/401 (18%)
 Frame = -3

Query: 1123 SAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQE 944
            + AE  SD +GT+     G +G        G WD ASS                    +E
Sbjct: 926  AGAEDKSDGWGTKTEGNSGSTG--------GKWDNASSG-------------------EE 958

Query: 943  QGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGAD-PW 767
            +  DPWGSK+    G  + E DPW  K + +A     ++ W ++    ARD   G++  W
Sbjct: 959  RQTDPWGSKIDSTKGKEQ-ETDPWTGKVTSSADAEDNNNGWNAR----ARDTASGSEGKW 1013

Query: 766  GSNNSISAGDCEQGADPW---GSNKSISAGDQGGTDPWGSKLL------------PVARD 632
            G+         E+ A  W   G N++ + G  GG   WG+K              P   +
Sbjct: 1014 GN------AGAEEKAGAWNGKGGNEN-NGGWNGGGSSWGNKTSSWGTPSFSGNQEPAWSN 1066

Query: 631  KEQGAD----------------AWGRNI--SGASTDKEERA-DPWGGKTALG-------- 533
             + G D                  GRN   +G+S    ER+ D W  + + G        
Sbjct: 1067 PKNGDDNTGYGRGGFGRGNRGRGRGRNFGDNGSSWSGGERSEDRWNTRDSDGCRGRGRWR 1126

Query: 532  ----------DSSHSDKAFDSWVKVSGTSGEMNSWNKSE---------GGGFEKDGDGWN 410
                      + S  D    SW    G     N WN+++         GGG+ +  D WN
Sbjct: 1127 FGRGDRPQGSNYSPGDNNDRSWGSGRGNRDRQN-WNRNDDKIPFGQDRGGGWSQSSD-WN 1184

Query: 409  RPFVKTTPPTSGISSSDHKQGA---DPWGSKVSVTVRDDKP----GADPWGSKPA---LS 260
                K       +S      G+   D WG+    +  DD+     G +PWG   A    +
Sbjct: 1185 SN--KGNTEDQALSKGKSSWGSDKNDSWGAP-KPSGGDDQTEKNNGNNPWGQWGAPGDTT 1241

Query: 259  GEDQGGADPWASKRAVGARE---LEQGDDPWGNKMAATSRD 146
            G+  GG   W +K   G      +      WG   A   ++
Sbjct: 1242 GKGSGGGGSWENKNLSGGTRGSGMTAEKPSWGGSGAGQKKE 1282



 Score = 59.7 bits (143), Expect = 8e-06
 Identities = 93/379 (24%), Positives = 144/379 (37%), Gaps = 66/379 (17%)
 Frame = -3

Query: 1054 GEQTVGAGLWDGASSSWQVLSTSTLFANN-NVQKIEQEQGADPWGSKVS-----LAAG-- 899
            G  +   G+ DG   SW    T  +  +     K +   GA  W  + S      AAG  
Sbjct: 783  GSSSSAPGIGDG--DSWVKTDTFPVAQDAWGKSKDKSSDGAAGWNERTSNQSHGTAAGNW 840

Query: 898  ----DHKPEADPWG-SKSSVAAGDL----GGS---------DPWGSKLVPAARDHKQGAD 773
                D   E D WG +K +    D     GG+          PW S     + D  + A 
Sbjct: 841  NKSSDVDGEKDAWGKAKDTTTKSDEKNNEGGNWNAPNSSIDQPWSSSRGTKSSDENR-AS 899

Query: 772  PWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKLL-----------PVARDKE 626
             W S+        ++  D W S K  SAG +  +D WG+K               +  +E
Sbjct: 900  TWNSSEDKKPSGGQEQGDAWTS-KMTSAGAEDKSDGWGTKTEGNSGSTGGKWDNASSGEE 958

Query: 625  QGADAWGRNISGASTDKEERADPWGGK-TALGDSSHSDKAFDSWVK--VSGTSG------ 473
            +  D WG  I  ++  KE+  DPW GK T+  D+  ++  +++  +   SG+ G      
Sbjct: 959  RQTDPWGSKID-STKGKEQETDPWTGKVTSSADAEDNNNGWNARARDTASGSEGKWGNAG 1017

Query: 472  ---EMNSWNKSEG----GGFEKDGDGW-NRPFVKTTPPTSGISS---SDHKQGADPWGSK 326
               +  +WN   G    GG+   G  W N+     TP  SG      S+ K G D  G  
Sbjct: 1018 AEEKAGAWNGKGGNENNGGWNGGGSSWGNKTSSWGTPSFSGNQEPAWSNPKNGDDNTGYG 1077

Query: 325  VSVTVRDDK---PGADPWGSKPALSGEDQGGADPWASKRAVGAR-----ELEQGDDPWG- 173
                 R ++    G +   +  + SG ++   D W ++ + G R        +GD P G 
Sbjct: 1078 RGGFGRGNRGRGRGRNFGDNGSSWSGGER-SEDRWNTRDSDGCRGRGRWRFGRGDRPQGS 1136

Query: 172  NKMAATSRDKAQKTDLWGS 116
            N     + D++     WGS
Sbjct: 1137 NYSPGDNNDRS-----WGS 1150


>gb|AQK94727.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 607

 Score =  119 bits (297), Expect = 2e-25
 Identities = 104/355 (29%), Positives = 151/355 (42%), Gaps = 5/355 (1%)
 Frame = -3

Query: 1189 DSLVKVITVEEQFLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASS 1010
            DSL+K++TV+   LS+P  + ++ +  P+  FG+Q+    G S  G+ +   GL    S 
Sbjct: 121  DSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTSFFG-SEAGKTSWDNGLPSFGSD 179

Query: 1009 SWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGS 830
            SWQ  S+STL    +VQ    E  ADPW  K S      K ++DPWG K+       G S
Sbjct: 180  SWQPFSSSTL----SVQNAGGESEADPWSKKTSA-----KDDSDPWGKKTD------GDS 224

Query: 829  DPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKL 650
            D WG K           +DPWG   ++SA D +  ++PWG     SA   G +DPWG K+
Sbjct: 225  DRWGKKT-------DGDSDPWG-KEAVSAADGD--SNPWGKETVPSAA--GDSDPWGKKV 272

Query: 649  LPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGE 470
            +  A   +  +D+W        T+KE                             G+ G 
Sbjct: 273  VSSA---DGDSDSW-------DTEKE-----------------------------GSGG- 292

Query: 469  MNSWNKSEG-GGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPG 293
              +W+K  G GG +  G  W+R  V            +  + +D WG   +  V D   G
Sbjct: 293  -TAWDKQAGVGGSDAAGSSWDRAVV------------NESEKSDNWGE--ACRVMDMGTG 337

Query: 292  A----DPWGSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKMAATSRDKA 140
            A    DPWGSK  +   D  G + W         +LE     WG     ++ D+A
Sbjct: 338  AEADTDPWGSK--VKAVDMEGPNNWEKATVPPNNKLEDVSQGWGQPKGNSTEDQA 390


>gb|AQK94723.1| Protein RNA-directed DNA methylation 3, partial [Zea mays]
          Length = 624

 Score =  119 bits (297), Expect = 2e-25
 Identities = 104/355 (29%), Positives = 151/355 (42%), Gaps = 5/355 (1%)
 Frame = -3

Query: 1189 DSLVKVITVEEQFLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASS 1010
            DSL+K++TV+   LS+P  + ++ +  P+  FG+Q+    G S  G+ +   GL    S 
Sbjct: 141  DSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTSFFG-SEAGKTSWDNGLPSFGSD 199

Query: 1009 SWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGS 830
            SWQ  S+STL    +VQ    E  ADPW  K S      K ++DPWG K+       G S
Sbjct: 200  SWQPFSSSTL----SVQNAGGESEADPWSKKTSA-----KDDSDPWGKKTD------GDS 244

Query: 829  DPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKL 650
            D WG K           +DPWG   ++SA D +  ++PWG     SA   G +DPWG K+
Sbjct: 245  DRWGKKT-------DGDSDPWG-KEAVSAADGD--SNPWGKETVPSAA--GDSDPWGKKV 292

Query: 649  LPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGE 470
            +  A   +  +D+W        T+KE                             G+ G 
Sbjct: 293  VSSA---DGDSDSW-------DTEKE-----------------------------GSGG- 312

Query: 469  MNSWNKSEG-GGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPG 293
              +W+K  G GG +  G  W+R  V            +  + +D WG   +  V D   G
Sbjct: 313  -TAWDKQAGVGGSDAAGSSWDRAVV------------NESEKSDNWGE--ACRVMDMGTG 357

Query: 292  A----DPWGSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKMAATSRDKA 140
            A    DPWGSK  +   D  G + W         +LE     WG     ++ D+A
Sbjct: 358  AEADTDPWGSK--VKAVDMEGPNNWEKATVPPNNKLEDVSQGWGQPKGNSTEDQA 410


>gb|AQK94722.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 967

 Score =  119 bits (297), Expect = 3e-25
 Identities = 104/355 (29%), Positives = 151/355 (42%), Gaps = 5/355 (1%)
 Frame = -3

Query: 1189 DSLVKVITVEEQFLSIPNIKRESAAEMPSDIFGTQERLIGGLSGNGEQTVGAGLWDGASS 1010
            DSL+K++TV+   LS+P  + ++ +  P+  FG+Q+    G S  G+ +   GL    S 
Sbjct: 481  DSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTSFFG-SEAGKTSWDNGLPSFGSD 539

Query: 1009 SWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGS 830
            SWQ  S+STL    +VQ    E  ADPW  K S      K ++DPWG K+       G S
Sbjct: 540  SWQPFSSSTL----SVQNAGGESEADPWSKKTSA-----KDDSDPWGKKTD------GDS 584

Query: 829  DPWGSKLVPAARDHKQGADPWGSNNSISAGDCEQGADPWGSNKSISAGDQGGTDPWGSKL 650
            D WG K           +DPWG   ++SA D +  ++PWG     SA   G +DPWG K+
Sbjct: 585  DRWGKKT-------DGDSDPWG-KEAVSAADGD--SNPWGKETVPSAA--GDSDPWGKKV 632

Query: 649  LPVARDKEQGADAWGRNISGASTDKEERADPWGGKTALGDSSHSDKAFDSWVKVSGTSGE 470
            +  A   +  +D+W        T+KE                             G+ G 
Sbjct: 633  VSSA---DGDSDSW-------DTEKE-----------------------------GSGG- 652

Query: 469  MNSWNKSEG-GGFEKDGDGWNRPFVKTTPPTSGISSSDHKQGADPWGSKVSVTVRDDKPG 293
              +W+K  G GG +  G  W+R  V            +  + +D WG   +  V D   G
Sbjct: 653  -TAWDKQAGVGGSDAAGSSWDRAVV------------NESEKSDNWGE--ACRVMDMGTG 697

Query: 292  A----DPWGSKPALSGEDQGGADPWASKRAVGARELEQGDDPWGNKMAATSRDKA 140
            A    DPWGSK  +   D  G + W         +LE     WG     ++ D+A
Sbjct: 698  AEADTDPWGSK--VKAVDMEGPNNWEKATVPPNNKLEDVSQGWGQPKGNSTEDQA 750