BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00025896
         (606 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]     52   3e-06

>gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]
          Length = 1788

 Score = 51.6 bits (122), Expect(2) = 3e-06
 Identities = 28/66 (42%), Positives = 45/66 (68%), Gaps = 11/66 (16%)
 Frame = -2

Query: 512 NNNHEQRLTSLEKSVSSL----TQSVQTLVQNSTQIY-------QLIETNTQAVARLDTQ 366
           N++H++RL+ LEK + ++    TQ+   L Q+ST +        Q++ +NTQA+ARL+TQ
Sbjct: 306 NSDHDKRLSVLEKGLEAMIKASTQTTNMLTQSSTTLNSFMQTTGQVLNSNTQAIARLETQ 365

Query: 365 LGQIAA 348
           LGQ+AA
Sbjct: 366 LGQLAA 371



 Score = 27.3 bits (59), Expect(2) = 3e-06
 Identities = 22/82 (26%), Positives = 35/82 (42%)
 Frame = -3

Query: 250 IHTLRYGREVDNLVVSLKYTDSSDSESKYHLDKNKNDSSPPAVSVETQKGKKVDYMPDFT 71
           IHTLR G+++DN V        S  ++    +   +D     + +E    +   Y P   
Sbjct: 405 IHTLRSGKQIDNQVRMPPDQTPSPIQNTPSDETIPSDDQNAELEIEPDLDR---YRPVAP 461

Query: 70  HLNLPRPKKISE*TSKIREVFK 5
             +  +P+K S    KI E FK
Sbjct: 462 FPDRLKPRKNSPQVEKILETFK 483