BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00025808
         (460 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020265238.1| RNA polymerase sigma factor sigC isoform X2 ...   154   2e-41
ref|XP_020265237.1| RNA polymerase sigma factor sigC isoform X1 ...   154   3e-41
ref|XP_008799751.1| PREDICTED: RNA polymerase sigma factor sigC ...   100   2e-21
ref|XP_010909938.2| PREDICTED: RNA polymerase sigma factor sigC ...    86   2e-16
ref|XP_010244378.1| PREDICTED: RNA polymerase sigma factor sigC ...    79   4e-14
gb|OVA08500.1| RNA polymerase sigma-70 [Macleaya cordata]              70   6e-11
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor sigC ...    61   6e-08
gb|AKC88686.1| sigma factor [Geranium incanum]                         58   9e-07

>ref|XP_020265238.1| RNA polymerase sigma factor sigC isoform X2 [Asparagus officinalis]
          Length = 496

 Score =  154 bits (388), Expect = 2e-41
 Identities = 89/145 (61%), Positives = 101/145 (69%), Gaps = 1/145 (0%)
 Frame = -1

Query: 436 MGIGFMASYNYNYKRWAFPIQPSTVPKQSHRHSSALRGREAYFESGRSTHHVILEGGEVH 257
           MG G +ASY    KRWAFPIQPS  PKQ  RH +AL GREA FESGRSTHH++LEGGEV+
Sbjct: 1   MGFGSLASY----KRWAFPIQPSA-PKQPLRHPTALTGREALFESGRSTHHLVLEGGEVY 55

Query: 256 QYTSKVYRCYSGALHNIESTSVYEESSKINDMEFYSGSYNSSRPITMMEDTSAYVASL-R 80
           +   K Y   SGA  +         SSKI+D+E Y GSYNSS PI  MED+ A V SL R
Sbjct: 56  RDAPKAYTYSSGATQS-------TRSSKIHDVELYRGSYNSSSPINTMEDSPACVESLRR 108

Query: 79  SSSKLQFSLLMENLDKIEDILGGTD 5
           SSS +QFSLLMENL +IEDIL G D
Sbjct: 109 SSSHIQFSLLMENLGEIEDILAGGD 133


>ref|XP_020265237.1| RNA polymerase sigma factor sigC isoform X1 [Asparagus officinalis]
 gb|ONK70030.1| uncharacterized protein A4U43_C05F29530 [Asparagus officinalis]
          Length = 543

 Score =  154 bits (388), Expect = 3e-41
 Identities = 89/145 (61%), Positives = 101/145 (69%), Gaps = 1/145 (0%)
 Frame = -1

Query: 436 MGIGFMASYNYNYKRWAFPIQPSTVPKQSHRHSSALRGREAYFESGRSTHHVILEGGEVH 257
           MG G +ASY    KRWAFPIQPS  PKQ  RH +AL GREA FESGRSTHH++LEGGEV+
Sbjct: 1   MGFGSLASY----KRWAFPIQPSA-PKQPLRHPTALTGREALFESGRSTHHLVLEGGEVY 55

Query: 256 QYTSKVYRCYSGALHNIESTSVYEESSKINDMEFYSGSYNSSRPITMMEDTSAYVASL-R 80
           +   K Y   SGA  +         SSKI+D+E Y GSYNSS PI  MED+ A V SL R
Sbjct: 56  RDAPKAYTYSSGATQS-------TRSSKIHDVELYRGSYNSSSPINTMEDSPACVESLRR 108

Query: 79  SSSKLQFSLLMENLDKIEDILGGTD 5
           SSS +QFSLLMENL +IEDIL G D
Sbjct: 109 SSSHIQFSLLMENLGEIEDILAGGD 133


>ref|XP_008799751.1| PREDICTED: RNA polymerase sigma factor sigC [Phoenix dactylifera]
          Length = 567

 Score = 99.8 bits (247), Expect = 2e-21
 Identities = 70/158 (44%), Positives = 96/158 (60%), Gaps = 13/158 (8%)
 Frame = -1

Query: 436 MGIGFMASYNYNYKRWAFPIQPSTVPK---------QSHRHSSALRGREAYFESGR-STH 287
           MG GFM +     KRWAFPIQ S +P          Q H  SS  R REA+ E G+ S  
Sbjct: 1   MGFGFMVAS----KRWAFPIQ-SPLPTNPCARLLDHQHHPPSSFFRVREAFSEPGKVSLQ 55

Query: 286 HVILEGGEV-HQYTSKVYRCYSGALHNIESTSVYEESSKIN-DMEFYSGSYNSSRPITMM 113
           H+  E  E+ H+ TSK   C   A  +IE+ S   +++++N D +   G+++ +RPI MM
Sbjct: 56  HLFTERVELLHRDTSKACVCSFEAPQSIENMSA--DANEVNMDRKLLRGAHDLNRPINMM 113

Query: 112 E-DTSAYVASLRSSSKLQFSLLMENLDKIEDILGGTDM 2
           E D+SAY A L +SS LQ++LLMENLD+IED+  GTD+
Sbjct: 114 ENDSSAYHARLTASSSLQYNLLMENLDRIEDVFAGTDL 151


>ref|XP_010909938.2| PREDICTED: RNA polymerase sigma factor sigC [Elaeis guineensis]
          Length = 604

 Score = 85.5 bits (210), Expect = 2e-16
 Identities = 63/156 (40%), Positives = 86/156 (55%), Gaps = 10/156 (6%)
 Frame = -1

Query: 439 EMGIGFMASYNYNYKRWAFPIQPSTVPKQ-----SHRHS--SALRGREAYFESGR-STHH 284
           +MG GFM +     KRWAFPIQ             H H   S  R RE  FE G+ S+  
Sbjct: 41  QMGFGFMVAS----KRWAFPIQSPLATNPCARLLDHHHPPPSFFRVREVSFELGKVSSQR 96

Query: 283 VILEGGEV-HQYTSKVYRCYSGALHNIESTSVYEESSKINDMEFYSGSYNSSRPITMME- 110
           +  E  E+ H+ T K Y C   A  +IE+ S   ++ K+N           +RPI M+E 
Sbjct: 97  LFTERVELLHRDTLKAYVCSFEAPQSIENMSA--DACKVN---IDKKLLKENRPINMIEE 151

Query: 109 DTSAYVASLRSSSKLQFSLLMENLDKIEDILGGTDM 2
           D+S+Y A L++SS LQ+SLLMENL++IED+  GTD+
Sbjct: 152 DSSSYNARLKASSSLQYSLLMENLERIEDVFAGTDL 187


>ref|XP_010244378.1| PREDICTED: RNA polymerase sigma factor sigC [Nelumbo nucifera]
 ref|XP_010244379.1| PREDICTED: RNA polymerase sigma factor sigC [Nelumbo nucifera]
          Length = 558

 Score = 79.0 bits (193), Expect = 4e-14
 Identities = 53/136 (38%), Positives = 75/136 (55%), Gaps = 5/136 (3%)
 Frame = -1

Query: 394 RWAFPIQPSTVPKQSHR-HSSALRGREAYFESGRSTH-HVILEGGEVHQYTS-KVYRCYS 224
           +W FP+Q   +   S R HSS +R REAYFES R +   VI E  E  Q    K Y C S
Sbjct: 8   KWVFPVQSHLLSHSSTRNHSSFVRSREAYFESARMSFLSVIPEESETLQKDPLKAYACSS 67

Query: 223 GALHNIESTSVYEESSKINDMEFYSGSYNSSRPITMM--EDTSAYVASLRSSSKLQFSLL 50
           G L  + +             EF++  Y++   I++   ED+SA++ASL++     FSLL
Sbjct: 68  GTLQPVNNGYAAIGVKMNTSKEFHNSLYDTFEDISIATPEDSSAFLASLQARKISCFSLL 127

Query: 49  MENLDKIEDILGGTDM 2
           MEN++KIEDI   +D+
Sbjct: 128 MENVEKIEDIFVSSDL 143


>gb|OVA08500.1| RNA polymerase sigma-70 [Macleaya cordata]
          Length = 553

 Score = 69.7 bits (169), Expect = 6e-11
 Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 6/137 (4%)
 Frame = -1

Query: 394 RWAFPIQPSTVPKQSHR-HSSALRGREAYFESGR-STHHVILEGGEVH-QYTSKVYRCYS 224
           +W FP+Q S     S + +SS++RG+E  +ES R S   VI +  E   +   K Y C S
Sbjct: 8   KWVFPVQSSFPTNSSTKLYSSSVRGKEVSYESARVSILSVIPDESEPFIKDPFKAYACSS 67

Query: 223 GALHNIESTSV-YEESSKINDMEFYSGSYNSSRPIT--MMEDTSAYVASLRSSSKLQFSL 53
           GAL  +ES+SV  EE   + +   Y   YN    IT  M ++ S   +SLR +    FSL
Sbjct: 68  GALEIMESSSVEMEEMKMVINKGSYRTLYNPIDGITIPMQDERSTSASSLRENKTSYFSL 127

Query: 52  LMENLDKIEDILGGTDM 2
           LM++L+K+E+I    D+
Sbjct: 128 LMDSLEKVEEIFVDADL 144


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor sigC [Vitis vinifera]
 emb|CBI20603.3| unnamed protein product, partial [Vitis vinifera]
          Length = 561

 Score = 61.2 bits (147), Expect = 6e-08
 Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
 Frame = -1

Query: 436 MGIGFMASYNYNYKRWAFPIQ-PSTVPKQSHRHSSALRGREAYFESGR-STHHVILEGGE 263
           MG+GF  +      +W FPI  P+     S   +S+++G+EA F+S R S   V  E  E
Sbjct: 1   MGMGFRLNL-----KWDFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCE 55

Query: 262 -VHQYTSKVYRCYSGALHNIESTSVYEESSKINDMEFYSGSY-----NSSRPITMMEDTS 101
            +++   K + C SGAL   E+     E+ K+   +   G        S  PI   ED S
Sbjct: 56  SLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIG--EDIS 113

Query: 100 AYVASLRSSSKLQFSLLMENLDKIEDILGGTDM 2
           A VA L++S   QFSLL+ENLD +E++   ++M
Sbjct: 114 ASVAGLQASKASQFSLLLENLDILEEMFADSNM 146


>gb|AKC88686.1| sigma factor [Geranium incanum]
          Length = 551

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
 Frame = -1

Query: 394 RWAFPIQPSTVPKQSHRHSSALRGREAYFESGRSTHHVIL--EGGEVHQYTSKVYRCYSG 221
           +W FPI   ++P    +    +RGRE  F   R     ++  EG   H+   K Y   S 
Sbjct: 12  KWDFPIHSHSLPTSPFKLPPPVRGRETSFSGTRWLFLPVISEEGENSHRELLKAYSSSSA 71

Query: 220 ALHNIESTSVYEESSKINDMEFYSGSYNSSRPITMMEDTSAYVASLRSSSKLQFSLLMEN 41
           A   ++     +E   + D++   GSYN  R    M + S+  ASL ++   QF+LLMEN
Sbjct: 72  APQTLD-----DEFLGLGDIQINKGSYNGRRS---MIEVSSSQASLHATKPAQFNLLMEN 123

Query: 40  LDKIED 23
           L+ +E+
Sbjct: 124 LNVLEE 129