BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00025779
         (775 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PKA51430.1| ataxia telangiectasia mutated family protein [Apo...    41   7e-07
gb|ONM31095.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]    42   3e-06
gb|AQK47447.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]    40   1e-05
gb|ONL97201.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]    40   1e-05

>gb|PKA51430.1| ataxia telangiectasia mutated family protein [Apostasia
           shenzhenica]
          Length = 259

 Score = 41.2 bits (95), Expect(3) = 7e-07
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
 Frame = +1

Query: 364 YKRQDK-KK*CIVKILDEAPIEDEIIANWLRLYRHKQQRPLSASILS-DMILVNEITRTR 537
           Y R+D+ K   I K +  APIED++  + LR + H  +RP+ A +   +++    + R R
Sbjct: 159 YTRKDRMKNEYIRKKVGVAPIEDKLRESRLRWFGHLNRRPIEAPVRKIELLDFAHVQRGR 218

Query: 538 GRPT*TWSE 564
           GRP  TW E
Sbjct: 219 GRPKKTWQE 227



 Score = 35.0 bits (79), Expect(3) = 7e-07
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +3

Query: 219 VLCDCRITMKLKGNFYKTAIRQATPY 296
           VLCD +I  K+KG FYKT +R A  Y
Sbjct: 105 VLCDRKIPSKIKGKFYKTVVRPAMIY 130



 Score = 25.0 bits (53), Expect(3) = 7e-07
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +2

Query: 11  TKQRI*YMECSFSNSVREK*GRSAH*WPKIPTSDHLAFHSSVSIIYHDCETKDVLVH*IK 190
           ++ +I YMEC+FS       G        +  S+   F    SII +D E  + ++  I+
Sbjct: 36  SRSKIEYMECTFSQERNSYIGDVTIGDQIVKKSER--FRYLGSIIQNDGEIDNDVISRIQ 93

Query: 191 A*WVK 205
           A WVK
Sbjct: 94  AGWVK 98


>gb|ONM31095.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 208

 Score = 41.6 bits (96), Expect(2) = 3e-06
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = +1

Query: 415 APIEDEIIANWLRLYRHKQQRPLSASILSDMI-LVNEITRTRGRPT*TWSE 564
           APIE++++ + LR + H QQRP  A +   +I  +  + R RGRPT TW+E
Sbjct: 127 APIEEKLMQHRLRWFGHIQQRPEEAPMHIGIIRRLENVKRGRGRPTLTWTE 177



 Score = 38.5 bits (88), Expect(2) = 3e-06
 Identities = 19/36 (52%), Positives = 22/36 (61%)
 Frame = +3

Query: 219 VLCDCRITMKLKGNFYKTAIRQATPYESNVVQFKSR 326
           VLCD R+  KLKG FY+TAIR A  Y +     K R
Sbjct: 55  VLCDPRVPQKLKGKFYRTAIRSAMLYGAECWPTKRR 90


>gb|AQK47447.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 657

 Score = 40.4 bits (93), Expect(2) = 1e-05
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = +1

Query: 415 APIEDEIIANWLRLYRHKQQRPLSASILSDMILVNE-ITRTRGRPT*TWSE 564
           APIE++++ + LR + H Q+RP  A +   +I   E + R RGRPT TW+E
Sbjct: 576 APIEEKLMQHRLRWFGHIQRRPEEAPVHIGIIRRPENVKRGRGRPTLTWTE 626



 Score = 37.7 bits (86), Expect(2) = 1e-05
 Identities = 19/36 (52%), Positives = 22/36 (61%)
 Frame = +3

Query: 219 VLCDCRITMKLKGNFYKTAIRQATPYESNVVQFKSR 326
           VLCD R+  KLKG FY+TAIR A  Y +     K R
Sbjct: 504 VLCDHRVPRKLKGKFYRTAIRPAMLYGAECWPTKRR 539


>gb|ONL97201.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 557

 Score = 40.4 bits (93), Expect(2) = 1e-05
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = +1

Query: 415 APIEDEIIANWLRLYRHKQQRPLSASILSDMILVNE-ITRTRGRPT*TWSE 564
           APIE++++ + LR + H Q+RP  A +   +I   E + R RGRPT TW+E
Sbjct: 476 APIEEKLMQHRLRWFGHIQRRPEEAPVHIGIIRRPENVKRGRGRPTLTWTE 526



 Score = 37.7 bits (86), Expect(2) = 1e-05
 Identities = 19/36 (52%), Positives = 22/36 (61%)
 Frame = +3

Query: 219 VLCDCRITMKLKGNFYKTAIRQATPYESNVVQFKSR 326
           VLCD R+  KLKG FY+TAIR A  Y +     K R
Sbjct: 404 VLCDPRVPRKLKGKFYRTAIRPAMLYGAECWPTKRR 439