BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00024968
         (1518 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]          199   5e-79
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711...   203   3e-73
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        198   1e-72
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v...   206   1e-72
gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposo...   211   2e-72
emb|CAJ86151.1| H0413E07.4 [Oryza sativa]                             199   2e-71
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   188   3e-71
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     188   3e-71
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar...   202   1e-70
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar...   202   1e-70
gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposo...   239   1e-70
gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposo...   197   1e-70
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     193   3e-70
emb|CDP17738.1| unnamed protein product [Coffea canephora]            204   1e-69
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   186   4e-68
dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]            186   4e-68
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              181   1e-67
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              183   3e-67
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              183   5e-67
gb|AFB73912.1| polyprotein [Citrus sinensis]                          182   6e-67

>gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]
          Length = 876

 Score =  199 bits (506), Expect(2) = 5e-79
 Identities = 123/372 (33%), Positives = 195/372 (52%), Gaps = 9/372 (2%)
 Frame = +1

Query: 1    QYLNTFSQIVSNLLALEVKLDEEDMAXXXXXXXXXXYDHHVTTIMYGKE---FEDVRQAL 171
            Q++N F  I+++L  L V++D+ED A          YDH VTT+ YGK+      +  AL
Sbjct: 49   QHINVFQNILTDLTRLRVQMDDEDKAIILLCSLPGSYDHLVTTLTYGKDSITLTSITSAL 108

Query: 172  ENNELMKMSDVKEGASRLAVKETKGKQKR*DIIGKTSGSSNRGSTGKGPT--CYYCKERS 345
             ++   + +   EG S+      +G   R    GK      R  +    T  CY CK+  
Sbjct: 109  LSHGQRRQN--AEGGSQGEGLYVQGCSDRGRNKGKAGSGKKRSKSKNRKTSECYSCKQIG 166

Query: 346  HLKKNCSKFKEYLKKHEYVQADSVKGKYTDTGVV*GSRGPL*VCDALIVESSRDKYSDTW 525
            H K++C   K+         + S    +TD     G        D L V SS  K +D W
Sbjct: 167  HWKRDCPNIKQG-------SSTSANLVHTDDSCSEG--------DILCVSSS--KCTDAW 209

Query: 526  ILDSGCTWHMSPRKEWLSRYQAVDGGSTLMENNFVCRIVGIVSILIRSHDGTDKTLSEVR 705
            ILDSGC++HM+P +EW + +++   G   + ++  C I GI  I I   DG  +TL+ VR
Sbjct: 210  ILDSGCSYHMTPNREWFTTFRSGSFGFVYLGDDKACAITGIGQIKIAMDDGGVRTLTNVR 269

Query: 706  HVPDLKKNLLSLGALKAKGCMFSWEDEN--ATVSRGFTVHLKGER-ARNLYILVRNVIVG 876
            ++P+L+KNL+SLG L+  G  +  + +     VS+G    ++ +R A N+Y L+ N +VG
Sbjct: 270  YIPELRKNLISLGTLQENGYSYRSDRDRDILKVSKGALTVMRVKRTAGNIYKLLGNTVVG 329

Query: 877  DI-STAAKEDVTRLWHNRLGHMNKKGLQVFHDKGMLSGIKNCKHDFCKFCIM*RHH*VLF 1053
            D+ S  +  D T+LWH RLGH++++G+   H + +L G+ +CK D CK+C++ +   V F
Sbjct: 330  DVASVESDNDATKLWHLRLGHLSERGMMELHKRSLLKGVCSCKMDLCKYCVLGKQCRVRF 389

Query: 1054 SSSPYKLKGGLD 1089
                +K +G LD
Sbjct: 390  KPMKHKTEGILD 401



 Score =  126 bits (316), Expect(2) = 5e-79
 Identities = 63/131 (48%), Positives = 86/131 (65%)
 Frame = +2

Query: 1115 AFIGGARYFVIFNDNFSRKM*VFFLKHKSDVF*IFKVWKKMVENHRREKVKVLWSNNGNE 1294
            A +GG+RYFV F D+FSRK+ V+F+K KS+VF  FK+WK  VEN    K+K L S+NG E
Sbjct: 414  ASMGGSRYFVTFTDDFSRKLWVYFMKQKSEVFSKFKLWKAEVENQTGRKIKYLRSDNGTE 473

Query: 1295 YNFVELKQHLIDEDSHHQLSIPKRSEQNEVAEFINMILTEQVRSLCLQADI*EGFWTETV 1474
            Y   + ++           S+ K  +QN VAE +NM LTE+ R L L+A + +GFW ET+
Sbjct: 474  YTNSQFEKFCEQHGIQRHFSVRKTPQQNGVAERMNMSLTERARCLQLKAGLSKGFWAETI 533

Query: 1475 SHACYLVNMSP 1507
            + ACYL+N SP
Sbjct: 534  NMACYLINRSP 544


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
 gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  203 bits (516), Expect(2) = 3e-73
 Identities = 123/373 (32%), Positives = 197/373 (52%), Gaps = 10/373 (2%)
 Frame = +1

Query: 1    QYLNTFSQIVSNLLALEVKLDEEDMAXXXXXXXXXXYDHHVTTIMYGKE---FEDVRQAL 171
            ++L   + ++  L  ++VK+++ED A          +++ V + + GK+    E+VR AL
Sbjct: 117  EHLEQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEEVRSAL 176

Query: 172  ENNELMKMSDVKEGASRLAVKETKGKQKR*DIIGKTSGSSNRG-STGKGP--TCYYCKER 342
             + EL   ++      + +   T  ++ R     K  G  N+  S G  P   C YCKE+
Sbjct: 177  HSRELRHKANGTSTDIQPSGLFTSSRKGR-----KNGGKKNKPMSKGAKPDDVCNYCKEK 231

Query: 343  SHLKKNCSKFKEYLKKHEYVQADSVKGKYTDTGVV*GSRGPL*VCDALIVESSRDKYSDT 522
             H K +C K K+  +K     A + +   ++              D  +V      +SD 
Sbjct: 232  GHWKFDCPKKKKQSEKQSVSAAVAEEDTNSEE-------------DIALVADEHTHHSDV 278

Query: 523  WILDSGCTWHMSPRKEWLSRYQAVDGGSTLMENNFVCRIVGIVSILIRSHDGTDKTLSEV 702
            W+LDSG ++H+ PR+EW + Y+ VDGGS  M N+ VC++VG  SI IR+HDG+  TL+EV
Sbjct: 279  WVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEV 338

Query: 703  RHVPDLKKNLLSLGALKAKGCMFSWEDENATVSRGFTVHLKGERARNLYILVRNVIVGDI 882
            RHVP + KNL+SL  L +KG  +S +D    V +G  + LKG     LY L  + + G  
Sbjct: 339  RHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSA 398

Query: 883  STAAKE----DVTRLWHNRLGHMNKKGLQVFHDKGMLSGIKNCKHDFCKFCIM*RHH*VL 1050
              A+ E    D+T+LWH RLGHM ++G+Q+   + +L+G K    +FC+ C+  + H   
Sbjct: 399  HVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNK 458

Query: 1051 FSSSPYKLKGGLD 1089
            F  + ++ KG LD
Sbjct: 459  FPKAIHRTKGTLD 471



 Score =  103 bits (256), Expect(2) = 3e-73
 Identities = 54/140 (38%), Positives = 78/140 (55%)
 Frame = +2

Query: 1094 CVGGVLIAFIGGARYFVIFNDNFSRKM*VFFLKHKSDVF*IFKVWKKMVENHRREKVKVL 1273
            C G   +  +GG R+FV   D++SR   V+ +KHKS+ F  FK WK ++EN   +K+K L
Sbjct: 477  CWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRL 536

Query: 1274 WSNNGNEYNFVELKQHLIDEDSHHQLSIPKRSEQNEVAEFINMILTEQVRSLCLQADI*E 1453
             ++NG E+ + E  Q   DE      ++    +QN VAE +N  L E+ R +   A +  
Sbjct: 537  RTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLDR 596

Query: 1454 GFWTETVSHACYLVNMSPST 1513
             FW E VS ACYL+N  P T
Sbjct: 597  RFWAEAVSTACYLINRGPHT 616


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  198 bits (504), Expect(2) = 1e-72
 Identities = 128/378 (33%), Positives = 202/378 (53%), Gaps = 16/378 (4%)
 Frame = +1

Query: 4    YLNTFSQIVSNLLALEVKLDEEDMAXXXXXXXXXXYDHHVTTIMYGKE---FEDVRQALE 174
            +L+ F +IV++L ++EVK DE+D+A          Y +   TI+Y ++    ++V  AL 
Sbjct: 120  HLSAFKEIVADLESMEVKYDEKDLALILLCSLPSSYANFRDTILYSRDTLTLKEVYDALH 179

Query: 175  NNELMKMSDVKEGASRLAVK-ETKGKQKR*DIIGKT---SGSSNRG---STGKGPTCYYC 333
              E MK     EG++  A     +G Q+  +   K+   S SS RG   S G+  +C YC
Sbjct: 180  AKEKMKKMVPSEGSNSQAEGLVVRGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSCKYC 239

Query: 334  KERSHLKKNCSKFKEYLKKH-EYVQADSVKGKYTDTGVV*GSRGPL*VCDALIVESSRDK 510
            K   H    C K ++  K+  +Y+     KGK  + G            + L+  +   +
Sbjct: 240  KRDGHDISKCWKLQDKDKRTGKYIP----KGKKEEEGKAAVVTDEKSDAELLVAYAGCAQ 295

Query: 511  YSDTWILDSGCTWHMSPRKEWLSRYQAVDGGSTLMENNFVCRIVGIVSILIRSHDGTDKT 690
             SD WILD+ CT+HM P ++W + Y+ V GG+ LM ++  C + GI ++ I+  DG  +T
Sbjct: 296  TSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRT 355

Query: 691  LSEVRHVPDLKKNLLSLGALKAKGCMFSWEDENATVSRGFTVHLKGE-RARNLYILVRNV 867
            LS+VRH+P+LK++L+SL  L  KG  +S  D    V++G  V +K   ++ NLY L    
Sbjct: 356  LSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTT 415

Query: 868  IVGDISTA----AKEDVTRLWHNRLGHMNKKGLQVFHDKGMLSGIKNCKHDFCKFCIM*R 1035
            I+G+++T     +  D T LWH RLGHM++ GL     +G+L G    K  FC+ CI  +
Sbjct: 416  ILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGK 475

Query: 1036 HH*VLFSSSPYKLKGGLD 1089
            H  V F++S +  +G LD
Sbjct: 476  HKRVKFNTSTHTTEGILD 493



 Score =  105 bits (263), Expect(2) = 1e-72
 Identities = 54/129 (41%), Positives = 75/129 (58%)
 Frame = +2

Query: 1124 GGARYFVIFNDNFSRKM*VFFLKHKSDVF*IFKVWKKMVENHRREKVKVLWSNNGNEYNF 1303
            GGARY +   D++SRK+  +FLKHK   F +FK WK MVE     KVK+L ++NG E+  
Sbjct: 509  GGARYMMTIVDDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCS 568

Query: 1304 VELKQHLIDEDSHHQLSIPKRSEQNEVAEFINMILTEQVRSLCLQADI*EGFWTETVSHA 1483
               K +   E      ++P   +QN VAE +N I+  + R +   A + + FW E VS A
Sbjct: 569  KIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRIIISKARCMLSNAGLPKQFWAEAVSTA 628

Query: 1484 CYLVNMSPS 1510
            CYL+N SPS
Sbjct: 629  CYLINRSPS 637


>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 813

 Score =  206 bits (525), Expect(2) = 1e-72
 Identities = 123/362 (33%), Positives = 191/362 (52%), Gaps = 12/362 (3%)
 Frame = +1

Query: 40   LALEVKLDEEDMAXXXXXXXXXXYDHHVTTIMYGKE---FEDVRQALENNELMKMSDVKE 210
            L   VK ++ED+A          ++H  TT+++GKE    + V  AL ++EL K   ++ 
Sbjct: 73   LKKSVKFEDEDLALMLLSSLPDEFEHLETTLLHGKENVSLDAVCSALYSHELRKQDKMRT 132

Query: 211  GASR----LAVKETKGKQKR*DIIGKTSGSSNRGSTGKGPTCYYCKERSHLKKNCSKFKE 378
             ++     L ++  +  Q +     +   S ++G       C +C E+ H KK+C K   
Sbjct: 133  KSTTSEEALVIRGRQQSQTK----ERRGMSKSKGRVVAKDECAFCHEKGHWKKDCPK--- 185

Query: 379  YLKKHEYVQADSVKGKYTDTGVV*GSRGPL*VCDALIVESSRDKYSDTWILDSGCTWHMS 558
             L+K E V  D+   +          +  +    +LIV  S   Y D WILDSGCT+HM 
Sbjct: 186  -LQKKEKVPQDANVAE---------CKSDVESDISLIVSLSASSYPDEWILDSGCTYHMC 235

Query: 559  PRKEWLSRYQAVDGGSTLMENNFVCRIVGIVSILIRSHDGTDKTLSEVRHVPDLKKNLLS 738
            P ++W   +Q +DGG   M N+  C+ VGI SI +R+HDG+ + L +VR+VP LKKNL+S
Sbjct: 236  PIRDWFFEFQELDGGVVYMGNDNPCKTVGIGSIKLRNHDGSTRILRDVRYVPKLKKNLIS 295

Query: 739  LGALKAKGCMFSWEDENATVSRGFTVHLKGERARNLYILVRNVIVGDISTAAKE-----D 903
            LGAL++KG + +  D     + G  V LKG    NLY    + +VG ++ A        +
Sbjct: 296  LGALESKGLVVTMRDGILKATLGALVMLKGVMKNNLYYYQGSTVVGTVAAATSSSKKDAE 355

Query: 904  VTRLWHNRLGHMNKKGLQVFHDKGMLSGIKNCKHDFCKFCIM*RHH*VLFSSSPYKLKGG 1083
              +LWH RLGH  +K LQ+   +G+L G K CK +FC+ C++ +   V F ++ +  KG 
Sbjct: 356  AAKLWHMRLGHAGEKSLQILTKQGLLKGTKACKLEFCEHCVLGKQRRVKFGTAIHNTKGI 415

Query: 1084 LD 1089
            LD
Sbjct: 416  LD 417



 Score = 97.8 bits (242), Expect(2) = 1e-72
 Identities = 54/131 (41%), Positives = 76/131 (58%)
 Frame = +2

Query: 1121 IGGARYFVIFNDNFSRKM*VFFLKHKSDVF*IFKVWKKMVENHRREKVKVLWSNNGNEYN 1300
            IGG  YFV F D+FSR++ VF +K+K+DV  IF  WK  VENH   K+KVL ++NG EY 
Sbjct: 432  IGGRHYFVTFVDDFSRRVWVFTMKNKNDVLEIFLKWKAEVENHTGRKIKVLQTDNGGEYK 491

Query: 1301 FVELKQHLIDEDSHHQLSIPKRSEQNEVAEFINMILTEQVRSLCLQADI*EGFWTETVSH 1480
                     D       ++ K  +QN V+E +N  L E+V  +   A++   FW E V++
Sbjct: 492  SDPFLNVCQDCGIVRHFTVRKTPQQNGVSERMNKTLVEKVCCMLSNAELGREFWAEAVTY 551

Query: 1481 ACYLVNMSPST 1513
            A +LVN  PS+
Sbjct: 552  AQHLVNRLPSS 562


>gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 690

 Score =  211 bits (536), Expect(2) = 2e-72
 Identities = 133/373 (35%), Positives = 195/373 (52%), Gaps = 11/373 (2%)
 Frame = +1

Query: 4    YLNTFSQIVSNLLALEVKLDEEDMAXXXXXXXXXXYDHHVTTIMYGKE----FEDVRQAL 171
            +LN F+ I+ +L  +E+K+D+ED A          Y H    ++Y       FEDV+  L
Sbjct: 122  HLNEFNSIIMDLENIEIKIDDEDKAVLLIVSLPSTYKHFKEIMLYSNNDTLSFEDVKSNL 181

Query: 172  ENNELMKMS----DVKEGASRLAVKETKGKQKR*DIIGKTSGSSNRGSTGKGPTCYYCKE 339
             + E   +     D  EG S     + KG         K S S +RG      TC YCK+
Sbjct: 182  LSKEKFDLDIHSEDKGEGLSVRGRTQEKGSTSN-----KKSRSKSRGRKSN-KTCRYCKK 235

Query: 340  RSHLKKNCSKFKEYLKKHEYVQADSVKGKYTDTGVV*GSRGPL*VCDALIVESSRDKYSD 519
              H   +C     ++ K +  + +  K       V   S G     D +I  SS  +   
Sbjct: 236  FGHDISDC-----FILKKKQERQEKGKNPAEAANVETDSDG-----DVMISVSSDKRSKT 285

Query: 520  TWILDSGCTWHMSPRKEWLSRYQAVDGGSTLMENNFVCRIVGIVSILIRSHDGTDKTLSE 699
             WILDSGCT+HM P K+  +  + VD G  LM N+  C+I GI +I I++HDGT KTLS 
Sbjct: 286  EWILDSGCTFHMCPYKDLFTTLEPVDSGVVLMGNDTQCKIAGIGTIQIKTHDGTIKTLSN 345

Query: 700  VRHVPDLKKNLLSLGALKAKGCMFSWEDENATVSRGFTVHLKGERARNLYILVRNVIVGD 879
            VR +PDLK+NL+SLG L++ GC +S E     VS+G  V LK  R  +LYIL  +++ G 
Sbjct: 346  VRFIPDLKRNLISLGTLESLGCKYSAEGGVLKVSKGAIVLLKANRIGSLYILQGSIVTGS 405

Query: 880  I---STAAKEDVTRLWHNRLGHMNKKGLQVFHDKGMLSGIKNCKHDFCKFCIM*RHH*VL 1050
                S+ + +D T+LWH RLGHM++KG+ +   +G+L      K +FC+ C+  +   V 
Sbjct: 406  AAVSSSMSDKDATKLWHMRLGHMSEKGMHLLSKQGLLGNQGIGKLEFCEHCVFGKQKRVS 465

Query: 1051 FSSSPYKLKGGLD 1089
            FS++ ++ KG LD
Sbjct: 466  FSTATHRTKGTLD 478



 Score = 92.4 bits (228), Expect(2) = 2e-72
 Identities = 49/133 (36%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
 Frame = +2

Query: 1124 GGARYFVIFNDNFSRKM*VFFLKHKSDVF*IFKVWKKMVENHRREKVKVLWSNNGNEYNF 1303
            GG RY +   D+FSRK+ V+FL+HK++ F  FK WK +VE    +KVK L ++NG E+  
Sbjct: 494  GGCRYMMTIIDDFSRKVWVYFLRHKNETFPTFKKWKTLVETQTGKKVKKLRTDNGLEFCE 553

Query: 1304 VELKQHLIDEDSHHQLSIPKRSEQNEVAEFINMILTEQVRSLCLQADI--*EGFWTETVS 1477
             +  +   +       +IP + +QN VAE +N  + E+ R +   A +      W E  S
Sbjct: 554  GDFNEFCANHGIARHKTIPGKPQQNGVAERLNRTILERARCMLSNAGLWHQRELWVEAAS 613

Query: 1478 HACYLVNMSPSTT 1516
             ACYL+N SP ++
Sbjct: 614  TACYLINRSPHSS 626


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa]
          Length = 1205

 Score =  199 bits (506), Expect(2) = 2e-71
 Identities = 129/378 (34%), Positives = 202/378 (53%), Gaps = 16/378 (4%)
 Frame = +1

Query: 4    YLNTFSQIVSNLLALEVKLDEEDMAXXXXXXXXXXYDHHVTTIMYGKE---FEDVRQALE 174
            +L+ F +IV++L ++EVK DEED+           Y +   TI+Y ++    ++V  AL 
Sbjct: 105  HLSVFKEIVADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALH 164

Query: 175  NNELMKMSDVKEGASRLAVK-ETKGKQKR*DIIGKT---SGSSNRG---STGKGPTCYYC 333
              E MK     EG++  A     +G Q+  +   K+   S SS RG   S G+  +C YC
Sbjct: 165  AKEKMKKMVPSEGSNSQAEGLVVQGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSCKYC 224

Query: 334  KERSHLKKNCSKFKEYLKKH-EYVQADSVKGKYTDTGVV*GSRGPL*VCDALIVESSRDK 510
            K   H    C K ++  K+  +Y+     KGK  D G            + L+  +   +
Sbjct: 225  KRDGHDISKCWKLQDKDKRTGKYIP----KGKKEDEGKAAVVTDEKSDAELLVAYAGCAQ 280

Query: 511  YSDTWILDSGCTWHMSPRKEWLSRYQAVDGGSTLMENNFVCRIVGIVSILIRSHDGTDKT 690
             SD WILD+ CT+HM P ++W + Y+ V GG+ LM ++  C + GI ++ I+  DG  +T
Sbjct: 281  TSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRT 340

Query: 691  LSEVRHVPDLKKNLLSLGALKAKGCMFSWEDENATVSRGFTVHLKGE-RARNLYILVRNV 867
            LS+VRH+P+LK++L+SL  L  KG  +S  D    V++G  V +K + ++ NLY L    
Sbjct: 341  LSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTT 400

Query: 868  IVGDISTA----AKEDVTRLWHNRLGHMNKKGLQVFHDKGMLSGIKNCKHDFCKFCIM*R 1035
            I+G+++T     +  D T LWH RLGHM++ GL     +G+L G    K  FC+ CI  +
Sbjct: 401  ILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGK 460

Query: 1036 HH*VLFSSSPYKLKGGLD 1089
            H  V F++S +  +G LD
Sbjct: 461  HKRVKFNTSTHTTEGILD 478



 Score =  100 bits (250), Expect(2) = 2e-71
 Identities = 51/128 (39%), Positives = 73/128 (57%)
 Frame = +2

Query: 1124 GGARYFVIFNDNFSRKM*VFFLKHKSDVF*IFKVWKKMVENHRREKVKVLWSNNGNEYNF 1303
            GGARY +   +++SRK+  +FLKHK   F +FK WK MVE     KVK+L ++NG E+  
Sbjct: 494  GGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCS 553

Query: 1304 VELKQHLIDEDSHHQLSIPKRSEQNEVAEFINMILTEQVRSLCLQADI*EGFWTETVSHA 1483
               K +   E      ++P   +QN VAE +N  +  + R +   A + + FW E VS A
Sbjct: 554  KIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTA 613

Query: 1484 CYLVNMSP 1507
            CYL+N SP
Sbjct: 614  CYLINRSP 621


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  188 bits (478), Expect(2) = 3e-71
 Identities = 125/378 (33%), Positives = 202/378 (53%), Gaps = 16/378 (4%)
 Frame = +1

Query: 4    YLNTFSQIVSNLLALEVKLDEEDMAXXXXXXXXXXYDHHVTTIMYGKE---FEDVRQALE 174
            +L+TF +IV++L ++EVK DEED+           Y +   TI+Y  +    ++V  AL 
Sbjct: 155  HLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILKEVYDALH 214

Query: 175  NNELMKMSDVKEGASRLAVK-ETKGKQKR*DIIGKT---SGSSNRG---STGKGPTCYYC 333
              E MK     EG++  A     +G+Q+  +   ++   S SS RG   S G+  +C YC
Sbjct: 215  AKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYC 274

Query: 334  KERSHLKKNCSKFKEYLKKH-EYVQADSVKGKYTDTGVV*GSRGPL*VCDALIVESSRDK 510
            K   H    C K ++  K+  +Y+     KGK  + G            + L+  +   +
Sbjct: 275  KRDGHDISECWKLQDKDKRTGKYIP----KGKKEEEGKAAVVTDEKSDTELLVAYAGCAQ 330

Query: 511  YSDTWILDSGCTWHMSPRKEWLSRYQAVDGGSTLMENNFVCRIVGIVSILIRSHDGTDKT 690
             SD WILD+  T+HM P ++W + Y+A+ GG+ LM ++  C + GI ++ I+  DG  +T
Sbjct: 331  TSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRT 390

Query: 691  LSEVRHVPDLKKNLLSLGALKAKGCMFSWEDENATVSRGFTVHLKGE-RARNLYILVRNV 867
            LS+VRH+P+LK++L+SL  L  KG  +S  D    V++G  V +K + ++ NLY L    
Sbjct: 391  LSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTT 450

Query: 868  IVGDIS----TAAKEDVTRLWHNRLGHMNKKGLQVFHDKGMLSGIKNCKHDFCKFCIM*R 1035
            I+G+++    + +  D T LWH RLGHM++ GL     + +L G    K  FC+ CI  +
Sbjct: 451  ILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGK 510

Query: 1036 HH*VLFSSSPYKLKGGLD 1089
            H  V F++S +  +G LD
Sbjct: 511  HKRVKFNTSTHTTEGILD 528



 Score =  110 bits (276), Expect(2) = 3e-71
 Identities = 55/129 (42%), Positives = 77/129 (59%)
 Frame = +2

Query: 1124 GGARYFVIFNDNFSRKM*VFFLKHKSDVF*IFKVWKKMVENHRREKVKVLWSNNGNEYNF 1303
            GGARY +   D++SRK+  +FLKHK   F +FK WK MVE    +KVK+L ++NG E+  
Sbjct: 544  GGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCS 603

Query: 1304 VELKQHLIDEDSHHQLSIPKRSEQNEVAEFINMILTEQVRSLCLQADI*EGFWTETVSHA 1483
               K +   E   H  ++P   +QN VAE +NM +  + R +   AD+ + FW E VS  
Sbjct: 604  KIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTT 663

Query: 1484 CYLVNMSPS 1510
            CYL+N SPS
Sbjct: 664  CYLINRSPS 672


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  188 bits (478), Expect(2) = 3e-71
 Identities = 125/378 (33%), Positives = 202/378 (53%), Gaps = 16/378 (4%)
 Frame = +1

Query: 4    YLNTFSQIVSNLLALEVKLDEEDMAXXXXXXXXXXYDHHVTTIMYGKE---FEDVRQALE 174
            +L+TF +IV++L ++EVK DEED+           Y +   TI+Y  +    ++V  AL 
Sbjct: 155  HLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILKEVYDALH 214

Query: 175  NNELMKMSDVKEGASRLAVK-ETKGKQKR*DIIGKT---SGSSNRG---STGKGPTCYYC 333
              E MK     EG++  A     +G+Q+  +   ++   S SS RG   S G+  +C YC
Sbjct: 215  AKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYC 274

Query: 334  KERSHLKKNCSKFKEYLKKH-EYVQADSVKGKYTDTGVV*GSRGPL*VCDALIVESSRDK 510
            K   H    C K ++  K+  +Y+     KGK  + G            + L+  +   +
Sbjct: 275  KRDGHDISECWKLQDKDKRTGKYIP----KGKKEEEGKAAVVTDEKSDTELLVAYAGCAQ 330

Query: 511  YSDTWILDSGCTWHMSPRKEWLSRYQAVDGGSTLMENNFVCRIVGIVSILIRSHDGTDKT 690
             SD WILD+  T+HM P ++W + Y+A+ GG+ LM ++  C + GI ++ I+  DG  +T
Sbjct: 331  TSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRT 390

Query: 691  LSEVRHVPDLKKNLLSLGALKAKGCMFSWEDENATVSRGFTVHLKGE-RARNLYILVRNV 867
            LS+VRH+P+LK++L+SL  L  KG  +S  D    V++G  V +K + ++ NLY L    
Sbjct: 391  LSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTT 450

Query: 868  IVGDIS----TAAKEDVTRLWHNRLGHMNKKGLQVFHDKGMLSGIKNCKHDFCKFCIM*R 1035
            I+G+++    + +  D T LWH RLGHM++ GL     + +L G    K  FC+ CI  +
Sbjct: 451  ILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGK 510

Query: 1036 HH*VLFSSSPYKLKGGLD 1089
            H  V F++S +  +G LD
Sbjct: 511  HKRVKFNTSTHTTEGILD 528



 Score =  110 bits (276), Expect(2) = 3e-71
 Identities = 55/129 (42%), Positives = 77/129 (59%)
 Frame = +2

Query: 1124 GGARYFVIFNDNFSRKM*VFFLKHKSDVF*IFKVWKKMVENHRREKVKVLWSNNGNEYNF 1303
            GGARY +   D++SRK+  +FLKHK   F +FK WK MVE    +KVK+L ++NG E+  
Sbjct: 544  GGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCS 603

Query: 1304 VELKQHLIDEDSHHQLSIPKRSEQNEVAEFINMILTEQVRSLCLQADI*EGFWTETVSHA 1483
               K +   E   H  ++P   +QN VAE +NM +  + R +   AD+ + FW E VS  
Sbjct: 604  KIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTT 663

Query: 1484 CYLVNMSPS 1510
            CYL+N SPS
Sbjct: 664  CYLINRSPS 672


>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
          Length = 2351

 Score =  202 bits (515), Expect(2) = 1e-70
 Identities = 130/376 (34%), Positives = 200/376 (53%), Gaps = 13/376 (3%)
 Frame = +1

Query: 1    QYLNTFSQIVSNLLALEVKLDEEDMAXXXXXXXXXXYDHHVTTIMYGKE---FEDVRQAL 171
            Q+L+ F+ I+ +L  ++ K+D+ED A          Y++ V T+MYG++    E+V+ AL
Sbjct: 623  QHLDKFNSIIMDLNNIDNKIDDEDQAIIVLCSLPPSYENFVDTMMYGRDDLTLEEVKNAL 682

Query: 172  ENNELMKMSDVK-----EGASRLAVKETKGKQKR*DIIGKTSGSSNRGSTGKGPTCYYCK 336
             ++EL K    K     EG   +A   +K K       G +S S  R  + K   CYYCK
Sbjct: 683  SSSELRKKITGKVVENNEGEGLVARGRSKAKG------GSSSKSHPRSQSKKRIQCYYCK 736

Query: 337  ERSHLKKNCSKFKEYLKKHEYVQADSVKGKYTDTGVV*GSRGPL*VCDALIVESSRDKYS 516
            +  H+K +C K KE  +  E  Q D       D+             DA IV +  D Y+
Sbjct: 737  KYGHMKVDCPKRKEKSESQEQ-QNDRANVADADSS-----------SDAEIVLAVSDSYA 784

Query: 517  D-TWILDSGCTWHMSPRKEWLSRYQAVDGGSTLMENNFVCRIVGIVSILIRSHDGTDKTL 693
               WILD+G T+H+S  K+  S Y+    GS LM N+  C+++GI ++ I+  DG  +TL
Sbjct: 785  GGRWILDTGATFHISTSKDAFSTYEK-HSGSVLMGNDHACQVMGIGTVRIKMFDGIVRTL 843

Query: 694  SEVRHVPDLKKNLLSLGALKAKGCMFSWEDENATVSRGFTVHLKGERARNLYILVRNVIV 873
            ++VRH+P++KKNL+SL  L  KG  +S E     V  G    ++G   R LY L  + + 
Sbjct: 844  TDVRHIPEMKKNLISLSTLDKKGFRYSAEGGVLKVFSGALTVIRGNLERGLYFLDGSSVT 903

Query: 874  GDISTAAKEDV----TRLWHNRLGHMNKKGLQVFHDKGMLSGIKNCKHDFCKFCIM*RHH 1041
            G    ++ +D+    T+LWH RLGHM+++GL V   +G+LSG    K +FC+ C+  +  
Sbjct: 904  GVAGVSSSDDLDSDTTKLWHMRLGHMSERGLSVLSKRGLLSGQCTGKLNFCEHCVFGKQT 963

Query: 1042 *VLFSSSPYKLKGGLD 1089
             V FS+  +K KG +D
Sbjct: 964  RVKFSTGIHKTKGTVD 979



 Score = 95.1 bits (235), Expect(2) = 1e-70
 Identities = 52/130 (40%), Positives = 77/130 (59%)
 Frame = +2

Query: 1124 GGARYFVIFNDNFSRKM*VFFLKHKSDVF*IFKVWKKMVENHRREKVKVLWSNNGNEYNF 1303
            GG RY + F D++SRK+ V+FLK K +V   FK +K ++EN   +K+K   ++NG E+  
Sbjct: 995  GGYRYLLTFIDDYSRKVWVYFLKSKYEVLINFKQFKALIENQTGKKIKRFRTDNGLEFCS 1054

Query: 1304 VELKQHLIDEDSHHQLSIPKRSEQNEVAEFINMILTEQVRSLCLQADI*EGFWTETVSHA 1483
             E  +   +E      ++ +  +QN VAE +N  L E+ R +   A + E FW E V+ A
Sbjct: 1055 GEFNEFCKNEGIVRHRTVRRTPQQNGVAERMNRTLLERARCMRSNAGLGEEFWAEAVNTA 1114

Query: 1484 CYLVNMSPST 1513
            CYLVN SPST
Sbjct: 1115 CYLVNRSPST 1124


>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
          Length = 1841

 Score =  202 bits (515), Expect(2) = 1e-70
 Identities = 130/376 (34%), Positives = 200/376 (53%), Gaps = 13/376 (3%)
 Frame = +1

Query: 1    QYLNTFSQIVSNLLALEVKLDEEDMAXXXXXXXXXXYDHHVTTIMYGKE---FEDVRQAL 171
            Q+L+ F+ I+ +L  ++ K+D+ED A          Y++ V T+MYG++    E+V+ AL
Sbjct: 644  QHLDKFNSIIMDLNNIDNKIDDEDQAIIVLCSLPPSYENFVDTMMYGRDDLTLEEVKNAL 703

Query: 172  ENNELMKMSDVK-----EGASRLAVKETKGKQKR*DIIGKTSGSSNRGSTGKGPTCYYCK 336
             ++EL K    K     EG   +A   +K K       G +S S  R  + K   CYYCK
Sbjct: 704  SSSELRKKITGKVVENNEGEGLVARGRSKAKG------GSSSKSHPRSQSKKRIQCYYCK 757

Query: 337  ERSHLKKNCSKFKEYLKKHEYVQADSVKGKYTDTGVV*GSRGPL*VCDALIVESSRDKYS 516
            +  H+K +C K KE  +  E  Q D       D+             DA IV +  D Y+
Sbjct: 758  KYGHMKVDCPKRKEKSESQEQ-QNDRANVADADSS-----------SDAEIVLAVSDSYA 805

Query: 517  D-TWILDSGCTWHMSPRKEWLSRYQAVDGGSTLMENNFVCRIVGIVSILIRSHDGTDKTL 693
               WILD+G T+H+S  K+  S Y+    GS LM N+  C+++GI ++ I+  DG  +TL
Sbjct: 806  GGRWILDTGATFHISTSKDAFSTYEK-HSGSVLMGNDHACQVMGIGTVRIKMFDGIVRTL 864

Query: 694  SEVRHVPDLKKNLLSLGALKAKGCMFSWEDENATVSRGFTVHLKGERARNLYILVRNVIV 873
            ++VRH+P++KKNL+SL  L  KG  +S E     V  G    ++G   R LY L  + + 
Sbjct: 865  TDVRHIPEMKKNLISLSTLDKKGFRYSAEGGVLKVFSGALTVIRGNLERGLYFLDGSSVT 924

Query: 874  GDISTAAKEDV----TRLWHNRLGHMNKKGLQVFHDKGMLSGIKNCKHDFCKFCIM*RHH 1041
            G    ++ +D+    T+LWH RLGHM+++GL V   +G+LSG    K +FC+ C+  +  
Sbjct: 925  GVAGVSSSDDLDSDTTKLWHMRLGHMSERGLSVLSKRGLLSGQCTGKLNFCEHCVFGKQT 984

Query: 1042 *VLFSSSPYKLKGGLD 1089
             V FS+  +K KG +D
Sbjct: 985  RVKFSTGIHKTKGTVD 1000



 Score = 95.1 bits (235), Expect(2) = 1e-70
 Identities = 52/130 (40%), Positives = 77/130 (59%)
 Frame = +2

Query: 1124 GGARYFVIFNDNFSRKM*VFFLKHKSDVF*IFKVWKKMVENHRREKVKVLWSNNGNEYNF 1303
            GG RY + F D++SRK+ V+FLK K +V   FK +K ++EN   +K+K   ++NG E+  
Sbjct: 1016 GGYRYLLTFIDDYSRKVWVYFLKSKYEVLINFKQFKALIENQTGKKIKRFRTDNGLEFCS 1075

Query: 1304 VELKQHLIDEDSHHQLSIPKRSEQNEVAEFINMILTEQVRSLCLQADI*EGFWTETVSHA 1483
             E  +   +E      ++ +  +QN VAE +N  L E+ R +   A + E FW E V+ A
Sbjct: 1076 GEFNEFCKNEGIVRHRTVRRTPQQNGVAERMNRTLLERARCMRSNAGLGEEFWAEAVNTA 1135

Query: 1484 CYLVNMSPST 1513
            CYLVN SPST
Sbjct: 1136 CYLVNRSPST 1145


>gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Apostasia shenzhenica]
          Length = 365

 Score =  239 bits (609), Expect = 1e-70
 Identities = 146/377 (38%), Positives = 207/377 (54%), Gaps = 14/377 (3%)
 Frame = +1

Query: 1    QYLNTFSQIVSNLLALEVKLDEEDMAXXXXXXXXXXYDHHVTTIMYGKE---FEDVRQAL 171
            +++N FS+++S L ++ VKL+EE+ A          YDH VTTI+YGK+    E+V   L
Sbjct: 9    EHMNVFSKMISQLRSINVKLEEENEALLLLSSLPKSYDHLVTTILYGKDTLKVEEVNATL 68

Query: 172  ENNELMKMSD------VKEGASRLAVKETKGKQKR*DIIGKTSGSSNRGSTGKGPTCYYC 333
             +NE+           VK    R   K   G Q R   I K +   NR        CYYC
Sbjct: 69   LSNEVRNKQSTGESLTVKTSQDRGRSKNKFGNQYRYRSISKEN--DNR--------CYYC 118

Query: 334  KERSHLKKNC---SKFKEYLKKHEYVQADSVKGKYTDTGVV*GSRGPL*VCDALIVESSR 504
            K+  H K++C   SK ++  K  E     S   K ++T           +C    ++SS 
Sbjct: 119  KKEGHWKRDCPKKSKQQQQKKSGEEASVASRLEKDSET-----------LCTFSCMDSS- 166

Query: 505  DKYSDTWILDSGCTWHMSPRKEWLSRYQAVDGGSTLMENNFVCRIVGIVSILIRSHDGTD 684
                D+WILDS C++HM P ++W S Y   DGG  +M NN  C+ VGI +I I+  DG  
Sbjct: 167  ----DSWILDSDCSYHMCPFRDWFSTYSIHDGGRVIMGNNSECKSVGIGTIKIKMFDGVI 222

Query: 685  KTLSEVRHVPDLKKNLLSLGALKAKGCMFSWEDENATVSRGFTVHLKGERARNLYILVRN 864
            +TL+EVRHVPDL+K L+SLG L A GC F   D    V +G  V +KGE+  +LY L+  
Sbjct: 223  RTLTEVRHVPDLRKGLISLGTLDASGCTFIGSDGIIKVKKGAPVVMKGEKIESLYRLIGK 282

Query: 865  VIVGDI--STAAKEDVTRLWHNRLGHMNKKGLQVFHDKGMLSGIKNCKHDFCKFCIM*RH 1038
             I GDI  +++  +D T LWH RLGHM+++GL   H++ +L GIK+CK DFC+FC++ + 
Sbjct: 283  TITGDIAVTSSTDDDDTMLWHARLGHMSERGLLELHNRKLLKGIKSCKIDFCEFCVLGKQ 342

Query: 1039 H*VLFSSSPYKLKGGLD 1089
              V F +S  K K  L+
Sbjct: 343  CRVKFVTSNKKSKNILE 359


>gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 609

 Score =  197 bits (500), Expect(2) = 1e-70
 Identities = 121/373 (32%), Positives = 186/373 (49%), Gaps = 11/373 (2%)
 Frame = +1

Query: 4    YLNTFSQIVSNLLALEVKLDEEDMAXXXXXXXXXXYDHHVTTIMYGKE---FEDVRQALE 174
            +L+  + I+  L  ++VK+++ED A          Y+  V ++  GKE    E+V+ +L 
Sbjct: 56   HLDELNSILMELRYIDVKIEDEDAAMILLASLPPSYESFVNSLTVGKECITMEEVKSSLH 115

Query: 175  NNELM----KMSDVKEGASRLAVKETKGKQKR*DIIGKTSGSSNRGSTGKGPTCYYCKER 342
            + EL       S+   GA  LA   TK  +K      K      +        C YCKE 
Sbjct: 116  SRELWFKASANSEGVNGAGLLAFNSTKNGKK------KKEQGKKKTKVNPRDICNYCKEP 169

Query: 343  SHLKKNCSKFKEYLKKHEYVQADSVKGKYTDTGVV*GSRGPL*VCDALIVESSRDKYSDT 522
             H KK+C K +         Q DS    + +  V             L +  +    ++ 
Sbjct: 170  GHWKKDCPKKRNQKSVAVAAQEDS---SFENELV-------------LSIVDNHQHSAEQ 213

Query: 523  WILDSGCTWHMSPRKEWLSRYQAVDGGSTLMENNFVCRIVGIVSILIRSHDGTDKTLSEV 702
            W+LDSGC++HM P + W   Y+   GG   M N+  C+ +GI +I I+ HDG  +TL+EV
Sbjct: 214  WVLDSGCSYHMCPNRSWFLTYEKKSGGDVFMGNDMACKTIGIGTIQIKMHDGVIRTLTEV 273

Query: 703  RHVPDLKKNLLSLGALKAKGCMFSWEDENATVSRGFTVHLKGERARNLYIL--VRNVIVG 876
            RHVPDLKKNL+S+G L  KG   + E     +S+G TV ++G +  NLY+L    N+I  
Sbjct: 274  RHVPDLKKNLISVGVLHTKGFKCNVEGGVMEISKGSTVVIRGIKKGNLYMLQGSTNLISE 333

Query: 877  DISTAAKE--DVTRLWHNRLGHMNKKGLQVFHDKGMLSGIKNCKHDFCKFCIM*RHH*VL 1050
             +S A K   D+T LWH RLGHM+++G+ V   + +L      +  FC+ C++ +HH + 
Sbjct: 334  SVSVADKHTPDLTHLWHMRLGHMSERGMMVLRKQKLLGDHTVKELKFCEHCVVGKHHRIK 393

Query: 1051 FSSSPYKLKGGLD 1089
            F  + +  K  LD
Sbjct: 394  FPKAQHTTKSTLD 406



 Score =  100 bits (249), Expect(2) = 1e-70
 Identities = 54/140 (38%), Positives = 78/140 (55%)
 Frame = +2

Query: 1094 CVGGVLIAFIGGARYFVIFNDNFSRKM*VFFLKHKSDVF*IFKVWKKMVENHRREKVKVL 1273
            C G   +  +GG RYF+   D++S    +F +KHK+  F  FK WK +VEN   +++K L
Sbjct: 412  CWGPSRVPSLGGGRYFLSIIDDYSGMTWIFIMKHKNQAFKYFKEWKILVENQTGKRIKRL 471

Query: 1274 WSNNGNEYNFVELKQHLIDEDSHHQLSIPKRSEQNEVAEFINMILTEQVRSLCLQADI*E 1453
             ++NG E+   E   +   E    Q ++    +QN VAE +N  L E+ R L   A + +
Sbjct: 472  RTDNGLEFCSAEFNDYCKKEGIVRQYTVRNTPQQNGVAERMNRTLLEKRRYLLSNAGLTK 531

Query: 1454 GFWTETVSHACYLVNMSPST 1513
             FW E V+ ACYLVN SPST
Sbjct: 532  SFWAEAVNTACYLVNGSPST 551


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  193 bits (491), Expect(2) = 3e-70
 Identities = 126/378 (33%), Positives = 201/378 (53%), Gaps = 16/378 (4%)
 Frame = +1

Query: 4    YLNTFSQIVSNLLALEVKLDEEDMAXXXXXXXXXXYDHHVTTIMYGKE---FEDVRQALE 174
            +L+ F +IV++L ++EVK DEED+           Y +   TI+Y ++    ++V  AL 
Sbjct: 29   HLSAFKEIVADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALH 88

Query: 175  NNELMKMSDVKEGASRLAVK-ETKGKQKR*DIIGKT---SGSSNRG---STGKGPTCYYC 333
              E MK     EG++  A     +G+Q+  +   K+   S S  RG   S G+  +C YC
Sbjct: 89   AKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTNNKSRDKSSSIYRGRSKSRGRYKSCKYC 148

Query: 334  KERSHLKKNCSKFKEYLKK-HEYVQADSVKGKYTDTGVV*GSRGPL*VCDALIVESSRDK 510
            K   H    C K ++  K+  +Y+     KGK  + G            + L+  +   +
Sbjct: 149  KRDGHDISECWKLQDKDKRTRKYIP----KGKKEEEGKAAVVTDEKSDAELLVAYAGCAQ 204

Query: 511  YSDTWILDSGCTWHMSPRKEWLSRYQAVDGGSTLMENNFVCRIVGIVSILIRSHDGTDKT 690
             SD WILD+ CT+HM P ++W + Y+AV GG+ LM ++  C + GI ++ I+  DG  +T
Sbjct: 205  TSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRT 264

Query: 691  LSEVRHVPDLKKNLLSLGALKAKGCMFSWEDENATVSRGFTVHLKGE-RARNLYILVRNV 867
            L +VRH+P+LK++L+SL  L  KG  +S  D    V++G  V +K + +  NLY L    
Sbjct: 265  LLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGTT 324

Query: 868  IVGDIS----TAAKEDVTRLWHNRLGHMNKKGLQVFHDKGMLSGIKNCKHDFCKFCIM*R 1035
            I+G+++    + +  D T LWH RLGHM++ GL     +G+L G    K  FC+ CI  +
Sbjct: 325  ILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGK 384

Query: 1036 HH*VLFSSSPYKLKGGLD 1089
            H  V F++S +  +G LD
Sbjct: 385  HKRVKFNTSTHTTEGILD 402



 Score =  102 bits (255), Expect(2) = 3e-70
 Identities = 53/129 (41%), Positives = 73/129 (56%)
 Frame = +2

Query: 1124 GGARYFVIFNDNFSRKM*VFFLKHKSDVF*IFKVWKKMVENHRREKVKVLWSNNGNEYNF 1303
            GGARY +   D++SRK+  +FLKHK   F +FK WK MVE     KVK+L ++NG E   
Sbjct: 418  GGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCS 477

Query: 1304 VELKQHLIDEDSHHQLSIPKRSEQNEVAEFINMILTEQVRSLCLQADI*EGFWTETVSHA 1483
               K +   E      ++P   +QN VAE +N  +  + R +   A + + FW E VS A
Sbjct: 478  KIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTA 537

Query: 1484 CYLVNMSPS 1510
            CYL+N SPS
Sbjct: 538  CYLINRSPS 546


>emb|CDP17738.1| unnamed protein product [Coffea canephora]
          Length = 798

 Score =  204 bits (519), Expect(2) = 1e-69
 Identities = 125/373 (33%), Positives = 197/373 (52%), Gaps = 10/373 (2%)
 Frame = +1

Query: 1    QYLNTFSQIVSNLLALEVKLDEEDMAXXXXXXXXXXYDHHVTTIMYGKE---FEDVRQAL 171
            +++  F+Q+V++LL L+V  ++ED+A          ++H  TT+++GKE    + V  AL
Sbjct: 147  EHITIFNQLVADLLNLDVNFEDEDLALMLLSSLPDEFEHLETTLLHGKENVSLDAVCSAL 206

Query: 172  ENNELMKMSDVKEG-ASRLAVKETKGKQKR*DIIGKTSGSSNRGSTGKGPTCYYCKERSH 348
             + EL K    K+  A+       +G+Q+     G+   S +     K   C +C+E+ H
Sbjct: 207  YSRELRKQDKKKKKVAAADEALVARGRQQS-QSKGRRGWSKSISRVAKDE-CAFCREKGH 264

Query: 349  LKKNCSKFKEYLKKHEYVQADSVKGKYTDTGVV*GSRGPL*VCDALIVESSRDKYSDTWI 528
             KK+C K K+  K  + V     K                   D  +  S    + D WI
Sbjct: 265  WKKDCPKLKKKGKAPQDVNVAECKSDAES--------------DFSLAVSRLTSHPDEWI 310

Query: 529  LDSGCTWHMSPRKEWLSRYQAVDGGSTLMENNFVCRIVGIVSILIRSHDGTDKTLSEVRH 708
            LDS CT+HM+P +EW   ++ +DGG   M N+  C+ VGI SI +R+HDG+ + L +VR+
Sbjct: 311  LDSTCTYHMTPMREWFFEFEELDGGFVYMGNDNPCKTVGIGSIKLRNHDGSTRILKDVRY 370

Query: 709  VPDLKKNLLSLGALKAKGCMFSWEDENATVSRGFTVHLKGERARNLYILVRNVIVGD--- 879
            VP+LK++L+SLG L++KG      D    V+ G  + LKG R  NLY    + +VG    
Sbjct: 371  VPNLKRSLISLGLLESKGLEVRMRDGILKVTSGALLMLKGVRKNNLYYYQGSTVVGTAAV 430

Query: 880  -ISTAAKED--VTRLWHNRLGHMNKKGLQVFHDKGMLSGIKNCKHDFCKFCIM*RHH*VL 1050
              S+++K+D   T+LWH RLG   +K LQ    +G+L G K CK +FC+ C++ +   V 
Sbjct: 431  ATSSSSKKDAEATKLWHMRLGDAGEKSLQNLAKQGLLKGTKVCKLEFCEHCVLEKQRKVK 490

Query: 1051 FSSSPYKLKGGLD 1089
            F +  +  KG LD
Sbjct: 491  FGTGIHNTKGILD 503



 Score = 89.7 bits (221), Expect(2) = 1e-69
 Identities = 49/131 (37%), Positives = 74/131 (56%)
 Frame = +2

Query: 1121 IGGARYFVIFNDNFSRKM*VFFLKHKSDVF*IFKVWKKMVENHRREKVKVLWSNNGNEYN 1300
            +GG  YFV F D+FSR++ VF +K K ++  IF  WK  VEN    K+K+L ++NG EY 
Sbjct: 518  LGGRYYFVTFIDDFSRRVWVFTMKSKDEMLKIFLKWKARVENQTGRKIKILRTDNGGEYK 577

Query: 1301 FVELKQHLIDEDSHHQLSIPKRSEQNEVAEFINMILTEQVRSLCLQADI*EGFWTETVSH 1480
                ++   +        + K  +QN V+E +N  L E+VR +   A +   FW E V++
Sbjct: 578  SDPFQKICQECGIVRHFIVRKIPQQNGVSEHMNKTLVEKVRCMLSNAGLGRKFWAEAVTY 637

Query: 1481 ACYLVNMSPST 1513
            A +LVN  PS+
Sbjct: 638  AQHLVNRLPSS 648


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2340

 Score =  186 bits (471), Expect(2) = 4e-68
 Identities = 125/384 (32%), Positives = 197/384 (51%), Gaps = 22/384 (5%)
 Frame = +1

Query: 4    YLNTFSQIVSNLLALEVKLDEEDMAXXXXXXXXXXYDHHVTTIMYGKE---FEDVRQALE 174
            +L+ F +I+++L ++EVK DEED+           Y +   TI+Y ++    ++V  AL 
Sbjct: 327  HLSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALH 386

Query: 175  NNELMKMSDVKEGAS----------RLAVKETKGKQKR*DIIGKTSGSSNRG---STGKG 315
              E MK     EG++          R   K TK + +        S SS RG   S G+ 
Sbjct: 387  VKEKMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSR------DKSSSSYRGRSKSRGRY 440

Query: 316  PTCYYCKERSHLKKNCSKFKEYLKKH-EYVQADSVKGKYTDTGVV*GSRGPL*VCDALIV 492
             +C YCK   H    C K  +  K+  +YV     KGK  + G            + L+ 
Sbjct: 441  KSCKYCKRDGHDIFECWKLHDKDKRTGKYVP----KGKKEEEGKAAVVTDEKSDAELLVA 496

Query: 493  ESSRDKYSDTWILDSGCTWHMSPRKEWLSRYQAVDGGSTLMENNFVCRIVGIVSILIRSH 672
             +   + SD WIL++ C +HM P ++W + Y+AV  G+ LM ++  C + GI ++ I+  
Sbjct: 497  YAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMF 556

Query: 673  DGTDKTLSEVRHVPDLKKNLLSLGALKAKGCMFSWEDENATVSRGFTVHLKGE-RARNLY 849
            DG  +TLS+VRH+P+LK++L+SL  L  KG  +S  D    V++G  V +K + ++ NLY
Sbjct: 557  DGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 616

Query: 850  ILVRNVIVGDIS----TAAKEDVTRLWHNRLGHMNKKGLQVFHDKGMLSGIKNCKHDFCK 1017
             L    I+G+++    + +  D T LWH RLGHM + GL     +G+L G    K  FC+
Sbjct: 617  HLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCE 676

Query: 1018 FCIM*RHH*VLFSSSPYKLKGGLD 1089
             CI  +H  V F++S +  +G LD
Sbjct: 677  HCIFGKHKRVKFNTSTHTTEGILD 700



 Score =  103 bits (256), Expect(2) = 4e-68
 Identities = 53/129 (41%), Positives = 73/129 (56%)
 Frame = +2

Query: 1124 GGARYFVIFNDNFSRKM*VFFLKHKSDVF*IFKVWKKMVENHRREKVKVLWSNNGNEYNF 1303
            GG RY +   D++SRK+  +FLKHK   F +FK WK MVE     KVK+L ++NG E+  
Sbjct: 716  GGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCS 775

Query: 1304 VELKQHLIDEDSHHQLSIPKRSEQNEVAEFINMILTEQVRSLCLQADI*EGFWTETVSHA 1483
               K +   E      ++P   +QN VAE +N  +  + R L   A + + FW E VS A
Sbjct: 776  KIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTA 835

Query: 1484 CYLVNMSPS 1510
            CYL+N SPS
Sbjct: 836  CYLINRSPS 844


>dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]
          Length = 1601

 Score =  186 bits (471), Expect(2) = 4e-68
 Identities = 125/384 (32%), Positives = 197/384 (51%), Gaps = 22/384 (5%)
 Frame = +1

Query: 4    YLNTFSQIVSNLLALEVKLDEEDMAXXXXXXXXXXYDHHVTTIMYGKE---FEDVRQALE 174
            +L+ F +I+++L ++EVK DEED+           Y +   TI+Y ++    ++V  AL 
Sbjct: 120  HLSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALH 179

Query: 175  NNELMKMSDVKEGAS----------RLAVKETKGKQKR*DIIGKTSGSSNRG---STGKG 315
              E MK     EG++          R   K TK + +        S SS RG   S G+ 
Sbjct: 180  VKEKMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSR------DKSSSSYRGRSKSRGRY 233

Query: 316  PTCYYCKERSHLKKNCSKFKEYLKKH-EYVQADSVKGKYTDTGVV*GSRGPL*VCDALIV 492
             +C YCK   H    C K  +  K+  +YV     KGK  + G            + L+ 
Sbjct: 234  KSCKYCKRDGHDIFECWKLHDKDKRTGKYVP----KGKKEEEGKAAVVTDEKSDAELLVA 289

Query: 493  ESSRDKYSDTWILDSGCTWHMSPRKEWLSRYQAVDGGSTLMENNFVCRIVGIVSILIRSH 672
             +   + SD WIL++ C +HM P ++W + Y+AV  G+ LM ++  C + GI ++ I+  
Sbjct: 290  YAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMF 349

Query: 673  DGTDKTLSEVRHVPDLKKNLLSLGALKAKGCMFSWEDENATVSRGFTVHLKGE-RARNLY 849
            DG  +TLS+VRH+P+LK++L+SL  L  KG  +S  D    V++G  V +K + ++ NLY
Sbjct: 350  DGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 409

Query: 850  ILVRNVIVGDIS----TAAKEDVTRLWHNRLGHMNKKGLQVFHDKGMLSGIKNCKHDFCK 1017
             L    I+G+++    + +  D T LWH RLGHM + GL     +G+L G    K  FC+
Sbjct: 410  HLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCE 469

Query: 1018 FCIM*RHH*VLFSSSPYKLKGGLD 1089
             CI  +H  V F++S +  +G LD
Sbjct: 470  HCIFGKHKRVKFNTSTHTTEGILD 493



 Score =  103 bits (256), Expect(2) = 4e-68
 Identities = 53/129 (41%), Positives = 73/129 (56%)
 Frame = +2

Query: 1124 GGARYFVIFNDNFSRKM*VFFLKHKSDVF*IFKVWKKMVENHRREKVKVLWSNNGNEYNF 1303
            GG RY +   D++SRK+  +FLKHK   F +FK WK MVE     KVK+L ++NG E+  
Sbjct: 509  GGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCS 568

Query: 1304 VELKQHLIDEDSHHQLSIPKRSEQNEVAEFINMILTEQVRSLCLQADI*EGFWTETVSHA 1483
               K +   E      ++P   +QN VAE +N  +  + R L   A + + FW E VS A
Sbjct: 569  KIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTA 628

Query: 1484 CYLVNMSPS 1510
            CYL+N SPS
Sbjct: 629  CYLINRSPS 637


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  181 bits (460), Expect(2) = 1e-67
 Identities = 111/376 (29%), Positives = 186/376 (49%), Gaps = 12/376 (3%)
 Frame = +1

Query: 4    YLNTFSQIVSNLLALEVKLDEEDMAXXXXXXXXXXYDHHVTTIMYGK-----EFEDVRQA 168
            ++NT + + S L A + K+ E + A          YD  +  I          F+DV  A
Sbjct: 116  HINTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNITDTLHFDDVAGA 175

Query: 169  -LENNELMKMSDVKEGASRLA--VKETKGKQKR*DIIGKTSGSSNRGSTGKGPTCYYCKE 339
             LE     K  + +  +S+ A  +  T+G+       G  +   ++    K   CY C  
Sbjct: 176  ILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGM 235

Query: 340  RSHLKKNCSKFKEYLKKHEYVQADSVKGKYTDTGVV*GSRGPL*VCDALIVESSRDKYSD 519
            + H+KK C   K+  +K+   +A + +G    T       G +   +A        + +D
Sbjct: 236  KGHVKKECWNIKKNGEKNS--EASTSQGCVASTS----DDGEILYSEAATSSKGERRLND 289

Query: 520  TWILDSGCTWHMSPRKEWLSRYQAVDGGSTLMENNFVCRIVGIVSILIRSHDGTDKTLSE 699
             WI+DSG TWHM+P ++W   Y+ +  GS  M N+    I G+ +I ++ HDGT + +  
Sbjct: 290  VWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQG 349

Query: 700  VRHVPDLKKNLLSLGALKAKGCMFSWEDENATVSRGFTVHLKGER-ARNLYILVRNVIV- 873
            VRHV  LKKNLLS+G L   GC    E     V +G  V +K E+   NLY+L+ + +  
Sbjct: 350  VRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQE 409

Query: 874  --GDISTAAKEDVTRLWHNRLGHMNKKGLQVFHDKGMLSGIKNCKHDFCKFCIM*RHH*V 1047
                ++ +++E+ T +WH RLGHM+++GL+V  ++ +L G+K     FC+ C++ + H +
Sbjct: 410  ADASVAASSQEETTMMWHQRLGHMSERGLKVLAERNLLHGLKAVNLPFCEHCVISKQHRL 469

Query: 1048 LFSSSPYKLKGGLDLM 1095
             F+    + K  LDL+
Sbjct: 470  KFARVTTRSKHILDLI 485



 Score =  105 bits (263), Expect(2) = 1e-67
 Identities = 55/131 (41%), Positives = 80/131 (61%)
 Frame = +2

Query: 1121 IGGARYFVIFNDNFSRKM*VFFLKHKSDVF*IFKVWKKMVENHRREKVKVLWSNNGNEYN 1300
            +GGARYFV F D++SR++ V+ +K KSDVF +FK +K  +E   R+K+K L ++NG EY 
Sbjct: 497  LGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETRKKIKCLRTDNGGEYI 556

Query: 1301 FVELKQHLIDEDSHHQLSIPKRSEQNEVAEFINMILTEQVRSLCLQADI*EGFWTETVSH 1480
              E       E    Q ++    +QN VAE +N  L E+ R++   A + + FW E V  
Sbjct: 557  DGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKT 616

Query: 1481 ACYLVNMSPST 1513
            ACY++N SPST
Sbjct: 617  ACYVINRSPST 627


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  183 bits (464), Expect(2) = 3e-67
 Identities = 112/376 (29%), Positives = 186/376 (49%), Gaps = 12/376 (3%)
 Frame = +1

Query: 4    YLNTFSQIVSNLLALEVKLDEEDMAXXXXXXXXXXYDHHVTTIMYGK-----EFEDVRQA 168
            ++NT + + S L A + K+ E + A          YD  +  I          F+DV  A
Sbjct: 116  HINTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGA 175

Query: 169  -LENNELMKMSDVKEGASRLA--VKETKGKQKR*DIIGKTSGSSNRGSTGKGPTCYYCKE 339
             LE     K  + +  +S+ A  +  T+G+       G  +   ++    K   CY C  
Sbjct: 176  ILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGM 235

Query: 340  RSHLKKNCSKFKEYLKKHEYVQADSVKGKYTDTGVV*GSRGPL*VCDALIVESSRDKYSD 519
            + H+KK C   K+  +K+   +A + +G    T       G +   +A        + +D
Sbjct: 236  KGHVKKECWNIKKNGEKNS--EASTSQGCVASTS----DDGEILYSEAATSSKGERRLND 289

Query: 520  TWILDSGCTWHMSPRKEWLSRYQAVDGGSTLMENNFVCRIVGIVSILIRSHDGTDKTLSE 699
             WI+DSG TWHM+P ++W   Y+ +  GS  M N+    I G+ +I ++ HDGT + +  
Sbjct: 290  VWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQG 349

Query: 700  VRHVPDLKKNLLSLGALKAKGCMFSWEDENATVSRGFTVHLKGER-ARNLYILVRNVIV- 873
            VRHV  LKKNLLS+G L   GC    E     V +G  V +K E+   NLY+L+ + +  
Sbjct: 350  VRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQE 409

Query: 874  --GDISTAAKEDVTRLWHNRLGHMNKKGLQVFHDKGMLSGIKNCKHDFCKFCIM*RHH*V 1047
                ++ A++E+ T +WH RLGHM+++GL+V  ++ +L G+K     FC+ C++ + H +
Sbjct: 410  ADASVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRL 469

Query: 1048 LFSSSPYKLKGGLDLM 1095
             F+    + K  LDL+
Sbjct: 470  KFARVTTRSKHILDLI 485



 Score =  103 bits (256), Expect(2) = 3e-67
 Identities = 54/131 (41%), Positives = 79/131 (60%)
 Frame = +2

Query: 1121 IGGARYFVIFNDNFSRKM*VFFLKHKSDVF*IFKVWKKMVENHRREKVKVLWSNNGNEYN 1300
            +GGARYFV F D++SR++ V+ +K KSDVF +FK +K  +E    +K+K L ++NG EY 
Sbjct: 497  LGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYV 556

Query: 1301 FVELKQHLIDEDSHHQLSIPKRSEQNEVAEFINMILTEQVRSLCLQADI*EGFWTETVSH 1480
              E       E    Q ++    +QN VAE +N  L E+ R++   A + + FW E V  
Sbjct: 557  DGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKT 616

Query: 1481 ACYLVNMSPST 1513
            ACY++N SPST
Sbjct: 617  ACYVINRSPST 627


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  183 bits (464), Expect(2) = 5e-67
 Identities = 112/376 (29%), Positives = 186/376 (49%), Gaps = 12/376 (3%)
 Frame = +1

Query: 4    YLNTFSQIVSNLLALEVKLDEEDMAXXXXXXXXXXYDHHVTTIMYGK-----EFEDVRQA 168
            ++NT + + S L A + K+ + + A          YD  +  I          F+DV  A
Sbjct: 116  HINTLNTLFSQLTASDFKIAKNERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGA 175

Query: 169  -LENNELMKMSDVKEGASRLA--VKETKGKQKR*DIIGKTSGSSNRGSTGKGPTCYYCKE 339
             LE     K  + +  +S+ A  +  T+G+       G  +   ++    K   CY C  
Sbjct: 176  ILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGM 235

Query: 340  RSHLKKNCSKFKEYLKKHEYVQADSVKGKYTDTGVV*GSRGPL*VCDALIVESSRDKYSD 519
            + H+KK C   K+  +K+   +A + +G    T       G +   +A        + +D
Sbjct: 236  KGHVKKECWNIKKNGEKNS--EASTSQGCVASTS----DDGEILYSEAATSSKGERRLND 289

Query: 520  TWILDSGCTWHMSPRKEWLSRYQAVDGGSTLMENNFVCRIVGIVSILIRSHDGTDKTLSE 699
             WI+DSG TWHM+P ++W   Y+ +  GS  M N+    I G+ +I ++ HDGT + +  
Sbjct: 290  VWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQG 349

Query: 700  VRHVPDLKKNLLSLGALKAKGCMFSWEDENATVSRGFTVHLKGER-ARNLYILVRNVIV- 873
            VRHV  LKKNLLS+G L   GC    E     V +G  V +K E+   NLY+L+ + +  
Sbjct: 350  VRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQE 409

Query: 874  --GDISTAAKEDVTRLWHNRLGHMNKKGLQVFHDKGMLSGIKNCKHDFCKFCIM*RHH*V 1047
                ++ A++E+ T +WH RLGHM+++GL+V  ++ +L G+K     FC+ C+M + H +
Sbjct: 410  ADASVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVMSKQHRL 469

Query: 1048 LFSSSPYKLKGGLDLM 1095
             F+    + K  LDL+
Sbjct: 470  KFARVTTRSKHILDLI 485



 Score =  102 bits (254), Expect(2) = 5e-67
 Identities = 53/131 (40%), Positives = 78/131 (59%)
 Frame = +2

Query: 1121 IGGARYFVIFNDNFSRKM*VFFLKHKSDVF*IFKVWKKMVENHRREKVKVLWSNNGNEYN 1300
            +GGARYFV F D++SR++ V+ +K KSDVF +FK +K  +E    +K+K L ++NG EY 
Sbjct: 497  LGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETEKKIKCLRTDNGGEYV 556

Query: 1301 FVELKQHLIDEDSHHQLSIPKRSEQNEVAEFINMILTEQVRSLCLQADI*EGFWTETVSH 1480
              E       E    Q ++    +QN VAE +N  L E+ R++   A + + FW E    
Sbjct: 557  DGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAAKT 616

Query: 1481 ACYLVNMSPST 1513
            ACY++N SPST
Sbjct: 617  ACYVINRSPST 627


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  182 bits (461), Expect(2) = 6e-67
 Identities = 115/377 (30%), Positives = 187/377 (49%), Gaps = 13/377 (3%)
 Frame = +1

Query: 4    YLNTFSQIVSNLLALEVKLDEEDMAXXXXXXXXXXYDHHVTTIMYGKE-----FEDVRQA 168
            ++NT   + S L  L   ++E + A          YD  +  +          F+DV  +
Sbjct: 116  HINTLKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQLIINLTNNNPVDSLVFDDVAAS 175

Query: 169  LENNELMKMSDVKEGASRL---AVKETKGKQKR*DIIGKTSGSSNRGSTGKGPTCYYCKE 339
            + N E  + +     AS     A+  T+G+       G  +   ++  + K   CY C +
Sbjct: 176  VLNEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGSQNHGRSKSRSKKNVKCYNCGK 235

Query: 340  RSHLKKNC--SKFKEYLKKHEYVQADSVKGKYTDTGVV*GSRGPL*VCDALIVESSRDKY 513
            + H+KK C  ++ +   K+ E   A       +D G +  S       +A IV   R + 
Sbjct: 236  KGHVKKECWSNQKRREGKEPESSNAQGCVASTSDDGEILYS-------EATIVSEGRKRL 288

Query: 514  SDTWILDSGCTWHMSPRKEWLSRYQAVDGGSTLMENNFVCRIVGIVSILIRSHDGTDKTL 693
            SD W++DSG TWHM+ R+EW   Y+ + GGS  M N+    I GI +I I+  DGT +T+
Sbjct: 289  SDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTIRTI 348

Query: 694  SEVRHVPDLKKNLLSLGALKAKGCMFSWEDENATVSRGFTVHLKGER-ARNLYILVRNVI 870
             EVRHV  LKKNLLSLG + + GC    E+    + +G  V +K E+   NL++L    +
Sbjct: 349  EEVRHVNGLKKNLLSLGQMDSHGCKTHVENGIMKIVKGALVLMKAEKICANLFMLKGETL 408

Query: 871  -VGDISTAAK-EDVTRLWHNRLGHMNKKGLQVFHDKGMLSGIKNCKHDFCKFCIM*RHH* 1044
               D   A+  E+ T +WH +LGHM+++GL++  ++ +  G+K+    FC+ C+  + H 
Sbjct: 409  QEADACVASNGEESTMMWHLKLGHMSEQGLKILSERKLPPGLKSVSLPFCEHCVTSKQHR 468

Query: 1045 VLFSSSPYKLKGGLDLM 1095
            + FS S  + K  LDL+
Sbjct: 469  LKFSRSIARSKCILDLI 485



 Score =  103 bits (256), Expect(2) = 6e-67
 Identities = 54/131 (41%), Positives = 77/131 (58%)
 Frame = +2

Query: 1121 IGGARYFVIFNDNFSRKM*VFFLKHKSDVF*IFKVWKKMVENHRREKVKVLWSNNGNEYN 1300
            +GGA+Y V F D++SR+  V+ +K KSDVF +FK +K  VE    +K+K L ++NG EY 
Sbjct: 497  MGGAKYMVTFIDDYSRRCWVYPIKKKSDVFPVFKEYKAWVELESGKKIKCLRTDNGGEYT 556

Query: 1301 FVELKQHLIDEDSHHQLSIPKRSEQNEVAEFINMILTEQVRSLCLQADI*EGFWTETVSH 1480
              E       E    Q ++    +QN VAE +N  LTE++R++   A +   FW E    
Sbjct: 557  DSEFLAFCKQEGIQRQFTVAYTPQQNGVAERMNRTLTERIRAMLRTAGLPNSFWAEAAKT 616

Query: 1481 ACYLVNMSPST 1513
            ACY+VN SPST
Sbjct: 617  ACYIVNRSPST 627