BLASTX nr result
ID: Ophiopogon22_contig00024089
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon22_contig00024089
(1162 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PHT53674.1| hypothetical protein CQW23_08136 [Capsicum baccatum] 111 6e-40
gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposo... 120 4e-39
gb|PPD88818.1| hypothetical protein GOBAR_DD14224 [Gossypium bar... 86 4e-30
gb|KHN13198.1| Retrovirus-related Pol polyprotein from transposo... 76 9e-26
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar... 82 1e-25
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar... 82 1e-25
gb|KHN13199.1| Retrovirus-related Pol polyprotein from transposo... 76 1e-25
gb|KHN13665.1| Retrovirus-related Pol polyprotein from transposo... 77 1e-24
gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposo... 75 3e-24
gb|KYP36396.1| Retrovirus-related Pol polyprotein from transposo... 61 5e-23
gb|PHT55765.1| hypothetical protein CQW23_04251 [Capsicum baccatum] 110 1e-22
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 71 1e-22
gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposo... 72 1e-22
gb|KYP36635.1| Retrovirus-related Pol polyprotein from transposo... 87 1e-22
gb|KYP37021.1| Retrovirus-related Pol polyprotein from transposo... 87 3e-22
emb|CAJ86151.1| H0413E07.4 [Oryza sativa] 70 7e-22
gb|KYP62384.1| Retrovirus-related Pol polyprotein from transposo... 85 7e-22
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 75 3e-20
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 62 4e-20
gb|PNX96445.1| copia LTR rider [Trifolium pratense] 72 4e-20
>gb|PHT53674.1| hypothetical protein CQW23_08136 [Capsicum baccatum]
Length = 707
Score = 111 bits (277), Expect(2) = 6e-40
Identities = 67/189 (35%), Positives = 108/189 (57%), Gaps = 5/189 (2%)
Frame = +2
Query: 203 KFDV*KFDGIINFSRWQVRMNAILTQHXXXXXXXXXXXXPSDMKDADWEELDDKVFNNNP 382
KFD+ KFDG I+F+ W+V+M A+LTQ+ P+ + WEE D+K +
Sbjct: 4 KFDIEKFDGKISFAIWRVQMLAVLTQNGLKKVLSGKSAKPATTTEEQWEETDEKALS--- 60
Query: 383 TLSS*FGT*PSHQRENDSFA--LESTLRSL--LEEVVRKSSYLEATSLLRKQEGTPINSH 550
T+ + N+ A + S L SL + + K E LR EGTPI SH
Sbjct: 61 TIQLCLSREVLREVINEKTAAGIWSKLESLYMTKSLANKLRLKERLFTLRMSEGTPIQSH 120
Query: 551 IVEFTTIIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLL 727
+ EF +II +L+ ++V+IDD D+A+LL +LP +Y+ FK++++YG +L ++V +LL
Sbjct: 121 LGEFNSIIIDLENLDVEIDDEDKAVLLIVSLPPSYRHFKEIMLYGNNVTLSFDDVKSNLL 180
Query: 728 NKDKINRQL 754
+K+K + Q+
Sbjct: 181 SKEKFDTQI 189
Score = 83.2 bits (204), Expect(2) = 6e-40
Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Frame = +1
Query: 799 KHRSFTNAEVKSYS-FCKKKGHIRSECFKKELNQSRKHKSDFSLSEEEVHVADMVGDEVI 975
K++S + + Y +CKK+ H SEC+K + Q+R+ K E + D
Sbjct: 212 KNQSKSKGKNSKYCRYCKKRNHEISECYKLKNKQNREDKGKQPEKSAEASFVETESDGEC 271
Query: 976 YTVTDFLVSDDDGWIVDSGCSQHISPKR*TFSTYTSV*GGAIFMGNSARCSMIGKGTVQL 1155
+ + + W++DSGC+ H+SP R F+TY S GG + MGN A+C ++GKGT+++
Sbjct: 272 FIASGTEQRSKNEWVLDSGCTFHMSPNRDWFTTYESFNGGLVLMGNDAQCKVVGKGTIKI 331
Query: 1156 R 1158
+
Sbjct: 332 K 332
>gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 690
Score = 120 bits (300), Expect(2) = 4e-39
Identities = 74/189 (39%), Positives = 105/189 (55%), Gaps = 3/189 (1%)
Frame = +2
Query: 188 MPTTIKFDV*KFDGIINFSRWQVRMNAILTQHXXXXXXXXXXXXPSDMKDADWEELDDKV 367
M T KFD+ KFDG I FS W+V+M A+LTQ+ P +M D W+ELD+K
Sbjct: 1 MSTVTKFDIEKFDGKICFSIWKVQMKAVLTQNGLKKALDGKAKKPVNMTDEQWDELDEKA 60
Query: 368 FNNNPTLSS*FGT*PSHQRENDSFALESTLRSL--LEEVVRKSSYLEATSLLRKQEGTPI 541
+ S E + AL L SL + + K E +R EGTPI
Sbjct: 61 LSAIQLCLS-KEVLREVANETTAAALWLKLESLYMTKSLANKLRLKERLYTIRMVEGTPI 119
Query: 542 NSHIVEFTTIIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVME 718
SH+ EF +II +L+ IE+KIDD D+A+LL +LPSTYK FK++++Y +L +V
Sbjct: 120 QSHLNEFNSIIMDLENIEIKIDDEDKAVLLIVSLPSTYKHFKEIMLYSNNDTLSFEDVKS 179
Query: 719 HLLNKDKIN 745
+LL+K+K +
Sbjct: 180 NLLSKEKFD 188
Score = 71.6 bits (174), Expect(2) = 4e-39
Identities = 41/123 (33%), Positives = 62/123 (50%)
Frame = +1
Query: 790 KKDKHRSFTNAEVKSYSFCKKKGHIRSECFKKELNQSRKHKSDFSLSEEEVHVADMVGDE 969
KK + +S K+ +CKK GH S+CF + Q R+ K V D GD
Sbjct: 215 KKSRSKSRGRKSNKTCRYCKKFGHDISDCFILKKKQERQEKGKNPAEAANVET-DSDGDV 273
Query: 970 VIYTVTDFLVSDDDGWIVDSGCSQHISPKR*TFSTYTSV*GGAIFMGNSARCSMIGKGTV 1149
+I +D + WI+DSGC+ H+ P + F+T V G + MGN +C + G GT+
Sbjct: 274 MISVSSDKRSKTE--WILDSGCTFHMCPYKDLFTTLEPVDSGVVLMGNDTQCKIAGIGTI 331
Query: 1150 QLR 1158
Q++
Sbjct: 332 QIK 334
>gb|PPD88818.1| hypothetical protein GOBAR_DD14224 [Gossypium barbadense]
Length = 718
Score = 85.5 bits (210), Expect(2) = 4e-30
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 9/153 (5%)
Frame = +2
Query: 320 PSDMKDADWEELDDKVFN------NNPTLSS*FGT*PSHQRENDSFALESTLRSLL--EE 475
P ++ +WEELD+K + N L E SFAL L +L +
Sbjct: 311 PENLNQTEWEELDEKALSAIQLCLTNTVLQDVL-------MEKTSFALWKRLETLYATKS 363
Query: 476 VVRKSSYLEATSLLRKQEGTPINSHIVEFTTIIYELDKIEVKIDD-DQALLLFCALPSTY 652
+ + + R EG + HI +F T++ +L +EV IDD DQA+LL C+LPS+Y
Sbjct: 364 LANRLVLKQRLFTFRMNEGELLKDHISQFITLLNDLKNVEVHIDDEDQAMLLLCSLPSSY 423
Query: 653 KTFKDVIIYGGK*SLKVNEVMEHLLNKDKINRQ 751
K+FK+ +IY GK L +V HLL++DK++ +
Sbjct: 424 KSFKETLIY-GKDKLSFEDVKGHLLSRDKLDNE 455
Score = 76.3 bits (186), Expect(2) = 4e-30
Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 6/132 (4%)
Frame = +1
Query: 781 IKEKKDKHRSFTNAEVKSYS---FCKKKGHIRSECFKKELNQSRKHKSDFSLSEEEVHVA 951
+ K D+ S A K +CKK GH++++ +K L R +S+ EE+V A
Sbjct: 458 LNSKADRQASVLVASKKREKRCRYCKKLGHVKADYYK--LRNKRAAESN----EEDVVGA 511
Query: 952 DMV---GDEVIYTVTDFLVSDDDGWIVDSGCSQHISPKR*TFSTYTSV*GGAIFMGNSAR 1122
++V GD+ + T WI+DSGCS H+ P R FSTY+SV GG + MGN +
Sbjct: 512 NLVDEGGDDFLLVSTSDNSKLTSEWILDSGCSFHMYPNREWFSTYSSVEGGVVHMGNDSS 571
Query: 1123 CSMIGKGTVQLR 1158
+IG GTV++R
Sbjct: 572 SKIIGIGTVKIR 583
>gb|KHN13198.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 341
Score = 76.3 bits (186), Expect(2) = 9e-26
Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 9/135 (6%)
Frame = +1
Query: 781 IKEKKDKHRSFTNAEVKSYSF---------CKKKGHIRSECFKKELNQSRKHKSDFSLSE 933
++ + D+ +SF KS S C+K+GH + C EL + + S+F +
Sbjct: 200 VRGRMDERKSFQRRRSKSRSKNKNNNKCHNCQKEGHWKRNC--PELKKDKVSTSEFGGAA 257
Query: 934 EEVHVADMVGDEVIYTVTDFLVSDDDGWIVDSGCSQHISPKR*TFSTYTSV*GGAIFMGN 1113
+D G V++ ++ V+DDD WI+DS C+ H++P R F+T+ +V GG + MGN
Sbjct: 258 VVSEESD--GGNVLFVSSN--VNDDD-WILDSACTFHMTPNRDWFATFQNVDGGKVLMGN 312
Query: 1114 SARCSMIGKGTVQLR 1158
CS+ GKGTVQ++
Sbjct: 313 DGACSIAGKGTVQIK 327
Score = 70.9 bits (172), Expect(2) = 9e-26
Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 7/192 (3%)
Frame = +2
Query: 203 KFDV*KFDGIINFSRWQVRMNAILTQHXXXXXXXXXXXXPSDMKDADWEELDDKVFN--- 373
KFDV KF G NF+ W+V+M A+LTQ P++M A + K ++
Sbjct: 2 KFDVEKFTGKNNFNLWRVKMLALLTQQECELALEGEEMLPAEMTAAQKRVIMKKAYSAIL 61
Query: 374 ---NNPTLSS*FGT*PSHQRENDSFALESTLRSLLEEVVRKSSYLEATSLLRKQEGTPIN 544
+ L S ++ D + R + + + + + ++ EG I+
Sbjct: 62 LSLGDEVLGE-----VSGEKTADKLWAKLESRYMTKSLHNRLCLKKQLYTMQMHEGESIH 116
Query: 545 SHIVEFTTIIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEH 721
HI F ++ L I+V +DD DQA+LL +LP Y F D II+ G+ SL + EV +
Sbjct: 117 KHIDNFNQVVLSLKNIDVAVDDEDQAVLLLSSLPRAYDNFVDTIIF-GRSSLSMEEV-KT 174
Query: 722 LLNKDKINRQLT 757
L ++ R++T
Sbjct: 175 ALQSWELKRRIT 186
>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
Length = 2351
Score = 81.6 bits (200), Expect(2) = 1e-25
Identities = 53/193 (27%), Positives = 103/193 (53%), Gaps = 5/193 (2%)
Frame = +2
Query: 194 TTIKFDV*KFDGIINFSRWQVRMNAILTQHXXXXXXXXXXXXPSDMKDADWEELDDKVFN 373
++ K+DV KF G +FS W+++M A+L Q PS + + E+ DD +
Sbjct: 505 SSTKYDVEKFTGKNSFSLWRIKMRAVLVQQGLLKALSGKDKLPSTLSE---EQKDDMLER 561
Query: 374 NNPTLSS*FGT*PSHQRENDSFALESTLRS----LLEEVVRKSSYLEATSLLRKQEGTPI 541
+ + G + ++ A LR + + + + + L+ +EGTP+
Sbjct: 562 AHSAILLCLGDEVLREVADEKTASGLWLRLESKYMTKSLTNRLYLKQRLYALKMEEGTPV 621
Query: 542 NSHIVEFTTIIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVME 718
+ H+ +F +II +L+ I+ KIDD DQA+++ C+LP +Y+ F D ++Y G+ L + EV +
Sbjct: 622 SQHLDKFNSIIMDLNNIDNKIDDEDQAIIVLCSLPPSYENFVDTMMY-GRDDLTLEEV-K 679
Query: 719 HLLNKDKINRQLT 757
+ L+ ++ +++T
Sbjct: 680 NALSSSELRKKIT 692
Score = 64.7 bits (156), Expect(2) = 1e-25
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Frame = +1
Query: 793 KDKHRSFTNAEVKSYSFCKKKGHIRSECFK-KELNQSRKHKSDFSLSEEEVHVADMVGD- 966
K RS + ++ Y +CKK GH++ +C K KE ++S++ ++D V AD D
Sbjct: 719 KSHPRSQSKKRIQCY-YCKKYGHMKVDCPKRKEKSESQEQQND----RANVADADSSSDA 773
Query: 967 EVIYTVTDFLVSDDDGWIVDSGCSQHISPKR*TFSTYTSV*GGAIFMGNSARCSMIGKGT 1146
E++ V+D WI+D+G + HIS + FSTY G++ MGN C ++G GT
Sbjct: 774 EIVLAVSDSYAGGR--WILDTGATFHISTSKDAFSTYEKH-SGSVLMGNDHACQVMGIGT 830
Query: 1147 VQLR 1158
V+++
Sbjct: 831 VRIK 834
>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
Length = 1841
Score = 81.6 bits (200), Expect(2) = 1e-25
Identities = 53/193 (27%), Positives = 103/193 (53%), Gaps = 5/193 (2%)
Frame = +2
Query: 194 TTIKFDV*KFDGIINFSRWQVRMNAILTQHXXXXXXXXXXXXPSDMKDADWEELDDKVFN 373
++ K+DV KF G +FS W+++M A+L Q PS + + E+ DD +
Sbjct: 526 SSTKYDVEKFTGKNSFSLWRIKMRAVLVQQGLLKALSGKDKLPSTLSE---EQKDDMLER 582
Query: 374 NNPTLSS*FGT*PSHQRENDSFALESTLRS----LLEEVVRKSSYLEATSLLRKQEGTPI 541
+ + G + ++ A LR + + + + + L+ +EGTP+
Sbjct: 583 AHSAILLCLGDEVLREVADEKTASGLWLRLESKYMTKSLTNRLYLKQRLYALKMEEGTPV 642
Query: 542 NSHIVEFTTIIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVME 718
+ H+ +F +II +L+ I+ KIDD DQA+++ C+LP +Y+ F D ++Y G+ L + EV +
Sbjct: 643 SQHLDKFNSIIMDLNNIDNKIDDEDQAIIVLCSLPPSYENFVDTMMY-GRDDLTLEEV-K 700
Query: 719 HLLNKDKINRQLT 757
+ L+ ++ +++T
Sbjct: 701 NALSSSELRKKIT 713
Score = 64.7 bits (156), Expect(2) = 1e-25
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Frame = +1
Query: 793 KDKHRSFTNAEVKSYSFCKKKGHIRSECFK-KELNQSRKHKSDFSLSEEEVHVADMVGD- 966
K RS + ++ Y +CKK GH++ +C K KE ++S++ ++D V AD D
Sbjct: 740 KSHPRSQSKKRIQCY-YCKKYGHMKVDCPKRKEKSESQEQQND----RANVADADSSSDA 794
Query: 967 EVIYTVTDFLVSDDDGWIVDSGCSQHISPKR*TFSTYTSV*GGAIFMGNSARCSMIGKGT 1146
E++ V+D WI+D+G + HIS + FSTY G++ MGN C ++G GT
Sbjct: 795 EIVLAVSDSYAGGR--WILDTGATFHISTSKDAFSTYEKH-SGSVLMGNDHACQVMGIGT 851
Query: 1147 VQLR 1158
V+++
Sbjct: 852 VRIK 855
>gb|KHN13199.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 344
Score = 76.3 bits (186), Expect(2) = 1e-25
Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 9/135 (6%)
Frame = +1
Query: 781 IKEKKDKHRSFTNAEVKSYSF---------CKKKGHIRSECFKKELNQSRKHKSDFSLSE 933
++ + D+ +SF KS S C+K+GH + C EL + + S+F +
Sbjct: 203 VRGRMDERKSFQRRRSKSRSKNKNNNKCHNCQKEGHWKRNC--PELKKDKVSTSEFGGAA 260
Query: 934 EEVHVADMVGDEVIYTVTDFLVSDDDGWIVDSGCSQHISPKR*TFSTYTSV*GGAIFMGN 1113
+D G V++ ++ V+DDD WI+DS C+ H++P R F+T+ +V GG + MGN
Sbjct: 261 VVSEESD--GGNVLFVSSN--VNDDD-WILDSACTFHMTPNRDWFATFQNVDGGKVLMGN 315
Query: 1114 SARCSMIGKGTVQLR 1158
CS+ GKGTVQ++
Sbjct: 316 DGACSIAGKGTVQIK 330
Score = 70.1 bits (170), Expect(2) = 1e-25
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 7/195 (3%)
Frame = +2
Query: 194 TTIKFDV*KFDGIINFSRWQVRMNAILTQHXXXXXXXXXXXXPSDMKDADWEELDDKVFN 373
++ KFDV KF G NF+ W+V+M A+LTQ P+++ A + K ++
Sbjct: 2 SSTKFDVEKFTGKNNFNLWRVKMLALLTQQECELALEGEEMLPAELTAAQKRVIMKKAYS 61
Query: 374 ------NNPTLSS*FGT*PSHQRENDSFALESTLRSLLEEVVRKSSYLEATSLLRKQEGT 535
+ L G ++ D + R + + + + + ++ EG
Sbjct: 62 AILLSLGDEVLGEISG-----EKTADKLWAKLESRYMTKSLHNRLCLKKQLYTMQMHEGE 116
Query: 536 PINSHIVEFTTIIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEV 712
I+ HI F ++ L I+V +DD DQA+LL +LP Y F D II+ G+ SL + EV
Sbjct: 117 SIHKHIDNFNQVVLSLKNIDVAVDDEDQAVLLLSSLPRAYDNFVDTIIF-GRSSLSMEEV 175
Query: 713 MEHLLNKDKINRQLT 757
+ L ++ R++T
Sbjct: 176 -KTALQSWELKRRIT 189
>gb|KHN13665.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 337
Score = 77.0 bits (188), Expect(2) = 1e-24
Identities = 42/124 (33%), Positives = 72/124 (58%)
Frame = +1
Query: 787 EKKDKHRSFTNAEVKSYSFCKKKGHIRSECFKKELNQSRKHKSDFSLSEEEVHVADMVGD 966
+ K+K RS E Y +CKK+GH R EC +++ + K+ + ++ VAD
Sbjct: 212 KSKNKRRSKYKNEKACY-YCKKEGHFRKECPERKKKNNGKYNDESDIAV----VADGYES 266
Query: 967 EVIYTVTDFLVSDDDGWIVDSGCSQHISPKR*TFSTYTSV*GGAIFMGNSARCSMIGKGT 1146
+ +++ S++ WI+DSGCS H++P FS+Y + GG + MGN+ C++IG GT
Sbjct: 267 AEVLSISTKKHSEE--WILDSGCSFHMTPNLEWFSSYKEIDGGKVLMGNNMVCNVIGIGT 324
Query: 1147 VQLR 1158
++L+
Sbjct: 325 IKLK 328
Score = 66.2 bits (160), Expect(2) = 1e-24
Identities = 50/188 (26%), Positives = 95/188 (50%), Gaps = 3/188 (1%)
Frame = +2
Query: 203 KFDV*KFDGIINFSRWQVRMNAILTQHXXXXXXXXXXXXPSDMKDADWEELDDKVFNNNP 382
+FDV KF G +FS +++M A+L PS + D + ++L K ++
Sbjct: 4 RFDVEKFTGENDFSLRRIKMQALLVHQGLDDALQGASKLPSTLSDKEKKDLLSKA-HSTI 62
Query: 383 TLSS*FGT*PSHQRENDSFALESTLRSLL--EEVVRKSSYLEATSLLRKQEGTPINSHIV 556
LS E + + L SL + + K + L+ +EG+ I H+
Sbjct: 63 ILSLGDEVLREVAEEKSAAGIWLKLESLYMTKSLTNKLYLKKRLHQLKMEEGSSIKEHVS 122
Query: 557 EFTTIIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLLNK 733
FT + +L ++V+ID+ DQA++L C+LPS+++ D +++ G+ +L + EV + LN
Sbjct: 123 LFTKAVLDLKSVDVRIDEEDQAVMLLCSLPSSFENLVDTMLF-GRDTLTLEEV-KATLNS 180
Query: 734 DKINRQLT 757
++ +++T
Sbjct: 181 RELKKKIT 188
>gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 609
Score = 75.1 bits (183), Expect(3) = 3e-24
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 1/126 (0%)
Frame = +1
Query: 784 KEKKDKHRSFTNAEVKSY-SFCKKKGHIRSECFKKELNQSRKHKSDFSLSEEEVHVADMV 960
K+KK++ + T + ++CK+ GH + +C KK R KS ++E+
Sbjct: 145 KKKKEQGKKKTKVNPRDICNYCKEPGHWKKDCPKK-----RNQKSVAVAAQED----SSF 195
Query: 961 GDEVIYTVTDFLVSDDDGWIVDSGCSQHISPKR*TFSTYTSV*GGAIFMGNSARCSMIGK 1140
+E++ ++ D + W++DSGCS H+ P R F TY GG +FMGN C IG
Sbjct: 196 ENELVLSIVDNHQHSAEQWVLDSGCSYHMCPNRSWFLTYEKKSGGDVFMGNDMACKTIGI 255
Query: 1141 GTVQLR 1158
GT+Q++
Sbjct: 256 GTIQIK 261
Score = 47.0 bits (110), Expect(3) = 3e-24
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Frame = +2
Query: 515 LRKQEGTPINSHIVEFTTIIYELDKIEVKI-DDDQALLLFCALPSTYKTFKDVIIYGGK* 691
L +E TP+ H+ E +I+ EL I+VKI D+D A++L +LP +Y++F + + GK
Sbjct: 45 LHMKEDTPLQDHLDELNSILMELRYIDVKIEDEDAAMILLASLPPSYESFVNSLTV-GKE 103
Query: 692 SLKVNEVMEHLLNKD 736
+ + EV L +++
Sbjct: 104 CITMEEVKSSLHSRE 118
Score = 40.0 bits (92), Expect(3) = 3e-24
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +3
Query: 393 ADLVLNQVINEKTTASLWSRL*DHYLKKSFANRLILKQHLF 515
+D VL +V N++T + LW +L Y+ KS N+L+LK+ LF
Sbjct: 3 SDEVLYEVANQETASGLWLKLEKLYMTKSICNKLLLKRRLF 43
>gb|KYP36396.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 485
Score = 60.8 bits (146), Expect(3) = 5e-23
Identities = 37/125 (29%), Positives = 62/125 (49%)
Frame = +1
Query: 784 KEKKDKHRSFTNAEVKSYSFCKKKGHIRSECFKKELNQSRKHKSDFSLSEEEVHVADMVG 963
K+ + K + ++ K + +C K GH + C E N+ +K +D S + ++D
Sbjct: 163 KKARSKSKIGDRSKFKCF-YCHKVGHFKKNC--PERNRDQKSSAD---SADIAAISDGYE 216
Query: 964 DEVIYTVTDFLVSDDDGWIVDSGCSQHISPKR*TFSTYTSV*GGAIFMGNSARCSMIGKG 1143
+ VT D W++DSGCS H+ PK+ F T GG + +G+ C + G G
Sbjct: 217 SADVLVVTTSQTQKD--WVMDSGCSYHMCPKKDYFETLKLKEGGTVLLGDDHPCQVQGIG 274
Query: 1144 TVQLR 1158
TV+L+
Sbjct: 275 TVRLK 279
Score = 52.0 bits (123), Expect(3) = 5e-23
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Frame = +2
Query: 527 EGTPINSHIVEFTTIIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKV 703
E I + EF I+ +L+ IEV+++D D+ALLL +LP Y+ FKD I+YG + + +
Sbjct: 60 ETKSIVDQLAEFNKILDDLENIEVQLEDEDKALLLLNSLPRNYEHFKDAILYGKEQDITL 119
Query: 704 NEVMEHLLNKDKINRQ 751
+EV + K+ +Q
Sbjct: 120 DEVQTSIRTKELQRQQ 135
Score = 45.1 bits (105), Expect(3) = 5e-23
Identities = 22/46 (47%), Positives = 29/46 (63%)
Frame = +3
Query: 378 IQLCPADLVLNQVINEKTTASLWSRL*DHYLKKSFANRLILKQHLF 515
I LC D L +V EKT A++W +L Y+ KS A+RL LKQ L+
Sbjct: 9 IILCLGDKALREVAREKTAAAMWLKLESLYMTKSLAHRLCLKQRLY 54
>gb|PHT55765.1| hypothetical protein CQW23_04251 [Capsicum baccatum]
Length = 553
Score = 110 bits (275), Expect = 1e-22
Identities = 66/189 (34%), Positives = 107/189 (56%), Gaps = 3/189 (1%)
Frame = +2
Query: 197 TIKFDV*KFDGIINFSRWQVRMNAILTQHXXXXXXXXXXXXPSDMKDADWEELDDKVFNN 376
++KFD+ KFDG I+F+ W+V+M A+LTQ+ P+ + WEE+D+K +
Sbjct: 2 SMKFDIEKFDGKISFAIWRVQMLAVLTQNGLKKVLSGKSAKPATTTEEQWEEMDEKALSI 61
Query: 377 NPTLSS*FGT*PSHQRENDSFALESTLRSL--LEEVVRKSSYLEATSLLRKQEGTPINSH 550
S E + + S L SL + + K E LR EGTPI SH
Sbjct: 62 IQLCLS-REVLREVINEKTAAGIWSKLESLYMTKSLANKLRLKERLFTLRMSEGTPIQSH 120
Query: 551 IVEFTTIIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVMEHLL 727
+ EF +II +L+ ++V+IDD D+A+LL +LP +Y+ FK +++YG +L ++V +LL
Sbjct: 121 LGEFNSIIIDLENLDVEIDDEDKAVLLIVSLPPSYRHFKKIMLYGNNVTLSFDDVKSNLL 180
Query: 728 NKDKINRQL 754
+K+K + Q+
Sbjct: 181 SKEKFDTQI 189
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 71.2 bits (173), Expect(2) = 1e-22
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Frame = +1
Query: 805 RSFTNAEVKSYSFCKKKGHIRSECFKKELNQSRKHKSDFSLSEEEVHVADMVGDEVIYTV 984
RS + KS +CK+ GH S+C+K + R K +EE A +V DE +
Sbjct: 226 RSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEK--SD 283
Query: 985 TDFLVS------DDDGWIVDSGCSQHISPKR*TFSTYTSV*GGAIFMGNSARCSMIGKGT 1146
+ LV+ D WI+D+ C+ H+ P R F+TY V GG + MG+ C + G GT
Sbjct: 284 AELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGT 343
Query: 1147 VQLR 1158
VQ++
Sbjct: 344 VQIK 347
Score = 65.5 bits (158), Expect(2) = 1e-22
Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 6/193 (3%)
Frame = +2
Query: 194 TTIKFDV*KFDGIINFSRWQVRMNAILTQHXXXXXXXXXXXXPSDMKDADW---EELDDK 364
T++K+D+ D FS WQV+M A+L Q D + DW E+ D+
Sbjct: 2 TSLKYDLPLLDRDTRFSLWQVKMRAVLAQQELDDALSGF-----DKRTQDWSNDEKKRDR 56
Query: 365 VFNNNPTLSS*FGT*PSHQRENDSFALESTLRSLL--EEVVRKSSYLEATSLLRKQEGTP 538
+ L +E + L L + +++ K + L + Q+
Sbjct: 57 KAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGS 116
Query: 539 INSHIVEFTTIIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVM 715
+ H+ F I+ +L+ +EVK D+ D AL+L C+LPS+Y F+D I+Y + +L + EV
Sbjct: 117 VMDHLSAFKEIVADLESMEVKYDEKDLALILLCSLPSSYANFRDTILY-SRDTLTLKEVY 175
Query: 716 EHLLNKDKINRQL 754
+ L K+K+ + +
Sbjct: 176 DALHAKEKMKKMV 188
>gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 593
Score = 71.6 bits (174), Expect(3) = 1e-22
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Frame = +1
Query: 784 KEKKDKHRSFTNAEVKSY-SFCKKKGHIRSECFKKELNQSRKHKSDFSLSEEEVHVADMV 960
K+KK++ + T + ++CK+ GH + +C KK R KS ++E+
Sbjct: 197 KKKKEQGKKKTKVNPRDICNYCKEPGHWKKDCPKK-----RNQKSVVVAAQED----SSF 247
Query: 961 GDEVIYTVTDFLVSDDDGWIVDSGCSQHISPKR*TFSTYTSV*GGAIFMGNSARCSMIGK 1140
+E++ ++ D + W++DSGCS H+ P R F TY GG +FMGN C I
Sbjct: 248 ENELVLSIVDNHQHFVEQWVLDSGCSYHMCPNRSWFLTYEKKFGGDVFMGNDMACKTISI 307
Query: 1141 GTVQLR 1158
GT+Q++
Sbjct: 308 GTIQIK 313
Score = 46.2 bits (108), Expect(3) = 1e-22
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = +2
Query: 515 LRKQEGTPINSHIVEFTTIIYELDKIEVKI-DDDQALLLFCALPSTYKTFKDVIIYGGK* 691
L +E TP+ H+ E +I+ EL I VKI D+D A++L +LP +Y++F + + GK
Sbjct: 97 LHMKEDTPLQDHLDELNSILMELRDINVKIEDEDAAMILLASLPPSYESFVNSLSV-GKE 155
Query: 692 SLKVNEVMEHLLNKD 736
+ + EV L +++
Sbjct: 156 CITMEEVKSSLHSRE 170
Score = 38.9 bits (89), Expect(3) = 1e-22
Identities = 19/46 (41%), Positives = 30/46 (65%)
Frame = +3
Query: 378 IQLCPADLVLNQVINEKTTASLWSRL*DHYLKKSFANRLILKQHLF 515
I L +D VL +V +++T + LW +L Y+ KS N+L+LK+ LF
Sbjct: 50 ILLSLSDEVLYEVADQETASGLWLKLEKLYMTKSICNKLLLKRRLF 95
>gb|KYP36635.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 364
Score = 86.7 bits (213), Expect(2) = 1e-22
Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 1/127 (0%)
Frame = +1
Query: 781 IKEKKDKHRSFTNAEVKSY-SFCKKKGHIRSECFKKELNQSRKHKSDFSLSEEEVHVADM 957
+K+KKDK + TN K ++CK+ GH + +C KK+ S + S SE
Sbjct: 220 MKKKKDKSKRKTNVNPKDICNYCKEPGHWKKDCPKKKGKPSAAVAKEESTSE-------- 271
Query: 958 VGDEVIYTVTDFLVSDDDGWIVDSGCSQHISPKR*TFSTYTSV*GGAIFMGNSARCSMIG 1137
+E++ ++ D +D WI+DSGCS H+ P R F TY GG +FMGN A C IG
Sbjct: 272 --NELVLSIADQPQHSEDQWILDSGCSFHMCPNRTWFDTYEKKSGGNVFMGNDAPCKTIG 329
Query: 1138 KGTVQLR 1158
GT++++
Sbjct: 330 IGTIKIK 336
Score = 49.7 bits (117), Expect(2) = 1e-22
Identities = 47/197 (23%), Positives = 92/197 (46%), Gaps = 14/197 (7%)
Frame = +2
Query: 188 MPTTIKFDV*KFDGIINFSRWQVRMNAILTQHXXXXXXXXXXXXPSDMKD-------ADW 346
M TI+ + KF+G +F+ W+++M A+L + + + +
Sbjct: 3 MTNTIRIE--KFNGKNSFNLWRIKMRALLKEQRVWAPLATTSVKQEVLSEPKEKASASKI 60
Query: 347 EELDDKVFNNNPTLSS*FGT*PSHQRENDSFALESTLRSLLEEVVRKSSYLEATSLLRK- 523
EEL ++ + + ++ ++ A S L LE++ S L R+
Sbjct: 61 EELAEQEEKAHSLILLSLSDEVLYEVADEETA--SGLWCKLEKLYMTKSICNKLLLKRRL 118
Query: 524 -----QEGTPINSHIVEFTTIIYELDKIEVKI-DDDQALLLFCALPSTYKTFKDVIIYGG 685
+EGTP+ H+ E +++ EL I+VKI D+D A++L +LP +Y++F + + G
Sbjct: 119 FGLHMKEGTPLKDHLDELNSVLMELRDIDVKIEDEDAAMILLASLPPSYESFVNSLSV-G 177
Query: 686 K*SLKVNEVMEHLLNKD 736
K + + EV L +++
Sbjct: 178 KECITMEEVKSSLHSRE 194
>gb|KYP37021.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 352
Score = 86.7 bits (213), Expect(2) = 3e-22
Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 1/127 (0%)
Frame = +1
Query: 781 IKEKKDKHRSFTNAEVKSY-SFCKKKGHIRSECFKKELNQSRKHKSDFSLSEEEVHVADM 957
+K+KKDK + TN K ++CK+ GH + +C KK+ S + S SE
Sbjct: 220 MKKKKDKSKRKTNVNPKDICNYCKEPGHWKKDCPKKKGKPSAAVAKEESTSE-------- 271
Query: 958 VGDEVIYTVTDFLVSDDDGWIVDSGCSQHISPKR*TFSTYTSV*GGAIFMGNSARCSMIG 1137
+E++ ++ D +D WI+DSGCS H+ P R F TY GG +FMGN A C IG
Sbjct: 272 --NELVLSIADQPQHSEDQWILDSGCSFHMCPNRTWFDTYEKKSGGNVFMGNDAPCKTIG 329
Query: 1138 KGTVQLR 1158
GT++++
Sbjct: 330 IGTIKIK 336
Score = 48.5 bits (114), Expect(2) = 3e-22
Identities = 47/197 (23%), Positives = 91/197 (46%), Gaps = 14/197 (7%)
Frame = +2
Query: 188 MPTTIKFDV*KFDGIINFSRWQVRMNAILTQHXXXXXXXXXXXXPSDMKD-------ADW 346
M TI+ + KF+G +F+ W+++M A+L + + + +
Sbjct: 3 MTNTIRIE--KFNGKNSFNLWRIKMRALLKEQRVWAPLATTSVKQEVLSEPKEKASASKI 60
Query: 347 EELDDKVFNNNPTLSS*FGT*PSHQRENDSFALESTLRSLLEEVVRKSSYLEATSLLRK- 523
EEL ++ + + ++ ++ A S L LE++ S L R+
Sbjct: 61 EELAEQEEKAHSLILLSLSDEVLYEVADEETA--SGLWCKLEKLYMTKSICNKLLLKRRL 118
Query: 524 -----QEGTPINSHIVEFTTIIYELDKIEVKI-DDDQALLLFCALPSTYKTFKDVIIYGG 685
+EGTP+ H+ E +++ EL I+VKI D+D A++L LP +Y++F + + G
Sbjct: 119 FGLHMKEGTPLKDHLDELNSVLMELRDIDVKIEDEDAAMILLAYLPPSYESFVNSLSV-G 177
Query: 686 K*SLKVNEVMEHLLNKD 736
K + + EV L +++
Sbjct: 178 KECITMEEVKSSLHSRE 194
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa]
Length = 1205
Score = 70.1 bits (170), Expect(2) = 7e-22
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Frame = +1
Query: 805 RSFTNAEVKSYSFCKKKGHIRSECFKKELNQSRKHKSDFSLSEEEVHVADMVGDEVIYTV 984
RS + KS +CK+ GH S+C+K + R K +E+ A +V DE +
Sbjct: 211 RSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEK--SD 268
Query: 985 TDFLVS------DDDGWIVDSGCSQHISPKR*TFSTYTSV*GGAIFMGNSARCSMIGKGT 1146
+ LV+ D WI+D+ C+ H+ P R F+TY V GG + MG+ C + G GT
Sbjct: 269 AELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGT 328
Query: 1147 VQLR 1158
VQ++
Sbjct: 329 VQIK 332
Score = 63.9 bits (154), Expect(2) = 7e-22
Identities = 49/194 (25%), Positives = 92/194 (47%), Gaps = 8/194 (4%)
Frame = +2
Query: 197 TIKFDV*KFDGIINFSRWQVRMNAILTQHXXXXXXXXXXXXPSDMKDADWEELDDKVFNN 376
++K+D+ D FS WQV+M A+L Q D + DW + K+
Sbjct: 3 SLKYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDAFSGF-----DKRTQDWSNDEKKM--- 54
Query: 377 NPTLSS*FGT*PSHQRENDSFALESTLRSLLEEVVRKSS----YLEATSLLRKQEGT--- 535
R+ S+ ++L+EV+++ + +L+ + ++ T
Sbjct: 55 --------------DRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTNDG 100
Query: 536 PINSHIVEFTTIIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEV 712
+ H+ F I+ +L+ +EVK D+ D L+L C+LPS+Y F+D I+Y + +L + EV
Sbjct: 101 SVMDHLSVFKEIVADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILY-SRDTLTLKEV 159
Query: 713 MEHLLNKDKINRQL 754
+ L K+K+ + +
Sbjct: 160 YDALHAKEKMKKMV 173
>gb|KYP62384.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 254
Score = 84.7 bits (208), Expect(2) = 7e-22
Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Frame = +1
Query: 781 IKEKKDKHRSFTNAEVKSY-SFCKKKGHIRSECFKKELNQSRKHKSDFSLSEEEVHVADM 957
+K+KK K + TN K ++CK+ GH + +C KK K K ++++EE
Sbjct: 117 MKKKKHKSKRKTNVNPKDICNYCKEPGHWKKDCPKK------KGKPSIAVAKEE----ST 166
Query: 958 VGDEVIYTVTDFLVSDDDGWIVDSGCSQHISPKR*TFSTYTSV*GGAIFMGNSARCSMIG 1137
+E++ ++ D +D WI+DSGCS H+ P R F TY GG +FMGN A C IG
Sbjct: 167 SENELVLSIADHPQHSEDQWILDSGCSFHMCPNRTWFDTYEKKSGGNVFMGNDAPCKTIG 226
Query: 1138 KGTVQLR 1158
GT++++
Sbjct: 227 IGTIKIK 233
Score = 49.3 bits (116), Expect(2) = 7e-22
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = +2
Query: 515 LRKQEGTPINSHIVEFTTIIYELDKIEVKI-DDDQALLLFCALPSTYKTFKDVIIYGGK* 691
L +EGTP+ H+ E +++ EL I+VKI D+D A++L +LP +Y++F + + GK
Sbjct: 18 LHMKEGTPLKDHLDELNSVLMELRDIDVKIEDEDAAMILLASLPPSYESFVNSLSV-GKE 76
Query: 692 SLKVNEVMEHLLNKD 736
+ + EV L +++
Sbjct: 77 CITMEEVKSSLHSRE 91
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 74.7 bits (182), Expect(2) = 3e-20
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 6/124 (4%)
Frame = +1
Query: 805 RSFTNAEVKSYSFCKKKGHIRSECFKKELNQSRKHKSDFSLSEEEVHVADMVGDEVIYTV 984
RS + KS +CK+ GH SEC+K + R K +EE A +V DE +
Sbjct: 135 RSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEK--SD 192
Query: 985 TDFLVS------DDDGWIVDSGCSQHISPKR*TFSTYTSV*GGAIFMGNSARCSMIGKGT 1146
+ LV+ D WI+D+ C+ H+ P R F+TY +V GG + MG+ C + G GT
Sbjct: 193 AELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGT 252
Query: 1147 VQLR 1158
VQ++
Sbjct: 253 VQIK 256
Score = 53.9 bits (128), Expect(2) = 3e-20
Identities = 29/98 (29%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Frame = +2
Query: 464 LLEEVVRKSSYLEATSLLRKQEGTPINSHIVEFTTIIYELDKIEVKIDD-DQALLLFCAL 640
+ +++ K + L + Q+ + H+ F I+ +L+ +EVK D+ D L+L C+L
Sbjct: 1 MTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEEDLGLILLCSL 60
Query: 641 PSTYKTFKDVIIYGGK*SLKVNEVMEHLLNKDKINRQL 754
PS+Y F+D I+Y + +L + EV + L K+K+ + +
Sbjct: 61 PSSYANFRDTILY-SRDTLTLKEVYDALHAKEKMKKMV 97
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 62.0 bits (149), Expect(3) = 4e-20
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Frame = +1
Query: 787 EKKDKHRSFTNAEVKSYSFCKKKGHIRSECFKKELNQSRKHKSDFSLSEEEVHVADMVGD 966
+++ + +S K +CK K H EC KK + RK+K D +S +D
Sbjct: 216 DRRGRSKSKPPGNKKFCVYCKLKNHNIDEC-KKVQAKERKNKKDGKVSVASAAASDDDSG 274
Query: 967 EVIYTVTDFLVSDDDGWIVDSGCSQHISPKR*TFSTYTSV-*GGAIFMGNSARCSMIGKG 1143
+ + + D+ WI+DS CS HI KR FS+Y V G + MG+ C+++G G
Sbjct: 275 DCLVVFAGCVAGHDE-WILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIG 333
Query: 1144 TVQLR 1158
+VQ++
Sbjct: 334 SVQIK 338
Score = 55.1 bits (131), Expect(3) = 4e-20
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Frame = +2
Query: 515 LRKQEGTPINSHIVEFTTIIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK* 691
L+ +E + +H+ EF I+ +L +EVK DD D LLL C+LP++Y F+D I+ +
Sbjct: 107 LKMKEEDSVITHMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILL-SRD 165
Query: 692 SLKVNEVMEHLLNKDKI 742
L + EV + L NK+K+
Sbjct: 166 ELTLKEVYDALQNKEKM 182
Score = 30.8 bits (68), Expect(3) = 4e-20
Identities = 23/76 (30%), Positives = 39/76 (51%)
Frame = +3
Query: 303 WGRRRSLQT*RMQIGKSSTIRFLITIQLCPADLVLNQVINEKTTASLWSRL*DHYLKKSF 482
+G+RR+ T +I K + L IQL + +L + + EKT+A LW +L + K
Sbjct: 38 FGKRRAEWT-AEEIRKDQ--KALALIQLHLHNDILQECLIEKTSAELWLKLESICMSKDL 94
Query: 483 ANRLILKQHLFFASKK 530
+++ +K LF K
Sbjct: 95 TSKMQMKMKLFTLKMK 110
>gb|PNX96445.1| copia LTR rider [Trifolium pratense]
Length = 1318
Score = 72.0 bits (175), Expect(2) = 4e-20
Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 3/191 (1%)
Frame = +2
Query: 188 MPTTIKFDV*KFDGIINFSRWQVRMNAILTQHXXXXXXXXXXXXPSDMKDADWEELDDKV 367
MP+T K+++ KF G+ +F W+++M A+L Q +++ A+ + +K
Sbjct: 1 MPST-KYEIEKFTGVNDFGLWRLKMKALLVQQGCLEALKGEAAMNAELTAAEKTNMIEKA 59
Query: 368 FNNNPTLSS*FGT*PSHQRENDSFALESTLRSLL--EEVVRKSSYLEATSLLRKQEGTPI 541
++ LS +E + L + L SL + +V + +A + E +
Sbjct: 60 -HSAILLSLGDKVLRQVSKETTASGLWAKLESLYMTKSLVNRLYLKQALYSFKMVEDKVL 118
Query: 542 NSHIVEFTTIIYELDKIEVKIDD-DQALLLFCALPSTYKTFKDVIIYGGK*SLKVNEVME 718
+ F +I +L+ I+VKIDD DQALLL CALP ++ FK+ ++YG + SL EV
Sbjct: 119 AEQLDMFNKLILDLENIDVKIDDEDQALLLLCALPRSHAHFKETLLYGRE-SLTFEEVQS 177
Query: 719 HLLNKDKINRQ 751
L +KD R+
Sbjct: 178 ALYSKDLNERK 188
Score = 55.8 bits (133), Expect(2) = 4e-20
Identities = 34/132 (25%), Positives = 68/132 (51%), Gaps = 5/132 (3%)
Frame = +1
Query: 778 FIKEKKDKHRSFTN--AEVKSYSFCKKKGHIRSECFKKELNQSRKHKSDFSLSEEEVHVA 951
F K+ K + +S+++ + ++ Y CKK+GH R C E + + ++ +++ +
Sbjct: 212 FDKKGKSQSKSYSDEVSGIRCYH-CKKEGHTRKVC--PERLKDHGGNGNAAIVQDDFESS 268
Query: 952 DMVGDEVIYTVTDFLVSDDDG---WIVDSGCSQHISPKR*TFSTYTSV*GGAIFMGNSAR 1122
D++ +VS D WI+DSGC+ H++P + F GG++ +GN+
Sbjct: 269 DVL-----------VVSSSDSRKEWIMDSGCTWHMTPNKDLFEELCDQDGGSVLLGNNKA 317
Query: 1123 CSMIGKGTVQLR 1158
C + G G+V+ +
Sbjct: 318 CKIAGVGSVRFK 329