BLASTX nr result
ID: Ophiopogon22_contig00023145
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon22_contig00023145
(2765 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar... 194 7e-88
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar... 194 1e-87
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 185 5e-77
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 184 1e-76
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 185 2e-76
gb|AFB73911.1| polyprotein [Citrus sinensis] 181 2e-76
gb|AFB73912.1| polyprotein [Citrus sinensis] 179 3e-76
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 187 3e-76
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 188 2e-73
gb|OMO83367.1| Integrase, catalytic core [Corchorus capsularis] 188 3e-72
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 193 1e-71
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711... 166 8e-71
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 177 4e-70
gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposo... 177 1e-69
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 174 1e-67
dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group] 174 1e-67
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 174 1e-67
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 174 1e-67
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 171 5e-66
gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposo... 177 3e-64
>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
Length = 1841
Score = 194 bits (492), Expect(4) = 7e-88
Identities = 107/241 (44%), Positives = 142/241 (58%), Gaps = 5/241 (2%)
Frame = +1
Query: 1786 LYKMIGSVIVGDASTTMED-----TTRL*HMHLEHMSKRCLQALCDKGVLPGIKHFKLGQ 1950
LY + GS + G A + D TT+L HM L HMS+R L L +G+L G KL
Sbjct: 915 LYFLDGSSVTGVAGVSSSDDLDSDTTKLWHMRLGHMSERGLSVLSKRGLLSGQCTGKLNF 974
Query: 1951 CKFCIMGRRHRVAFSTS*HKTKGLLDLIHTDVWGTSPIVFIGGTRYYVIFIYNFSRKIWV 2130
C+ C+ G++ RV FST HKTKG +D H+D+WG SP + GG RY + FI ++SRK+WV
Sbjct: 975 CEHCVFGKQTRVKFSTGIHKTKGTVDYFHSDLWGPSPTISKGGYRYLLTFIDDYSRKVWV 1034
Query: 2131 YLLKKNSEIFHNFKE*KIMVEK*K**KVKFLRSDNDGEYTSAEFKEYLTGEGIEH*FSIS 2310
Y LK E+ NFK+ K ++E K+K R+DN E+ S EF E+ EGI ++
Sbjct: 1035 YFLKSKYEVLINFKQFKALIENQTGKKIKRFRTDNGLEFCSGEFNEFCKNEGIVRHRTVR 1094
Query: 2311 RQP*QNGITEHMNWTLTEHAHNMRLQTDMLGGFRTEAASHVRYLVNRSPSTVVDL*IPEE 2490
R P QNG+ E MN TL E A MR + F EA + YLVNRSPST ++L PEE
Sbjct: 1095 RTPQQNGVAERMNRTLLERARCMRSNAGLGEEFWAEAVNTACYLVNRSPSTAIELKTPEE 1154
Query: 2491 M 2493
+
Sbjct: 1155 V 1155
Score = 127 bits (319), Expect(4) = 7e-88
Identities = 108/359 (30%), Positives = 176/359 (49%), Gaps = 18/359 (5%)
Frame = +2
Query: 752 GKENKPSKLEDEKWNDIDFRAKATIILCLPDEVLYNVMNPTI--GLWCKLESPYMTKSLS 925
GK+ PS L +E+ +D+ RA + I+LCL DEVL V + GLW +LES YMTKSL+
Sbjct: 563 GKDKLPSTLSEEQKDDMLERAHSAILLCLGDEVLREVADEKTASGLWLRLESKYMTKSLT 622
Query: 926 NKLLMKKQLYSLRMKVQYYISTLFTRS*SIYWLXXXXXXXXXXQ-----VLC*TLPSSYD 1090
N+L +K++LY+L+M+ +S + SI + VLC +LP SY+
Sbjct: 623 NRLYLKQRLYALKMEEGTPVSQHLDKFNSIIMDLNNIDNKIDDEDQAIIVLC-SLPPSYE 681
Query: 1091 CLATTIMYGKETIELDDVR*MLQNQELRKNKESTKV----ALGLFAKNXXXXXXXXXXXX 1258
T+MYG++ + L++V+ L + ELRK V GL A+
Sbjct: 682 NFVDTMMYGRDDLTLEEVKNALSSSELRKKITGKVVENNEGEGLVARGRSKAKGGSSSKS 741
Query: 1259 XXXXXXXN--VCFYSKKPGHIKKNCYKYKEMQKKDDKESDGASGXXXXXXXXXXXXXXXC 1432
C+Y KK GH+K +C K KE + ++++D A+
Sbjct: 742 HPRSQSKKRIQCYYCKKYGHMKVDCPKRKEKSESQEQQNDRAN---------VADADSSS 792
Query: 1433 DVLTTESGKERYSD-TWLLNSSVHTTCAQKGNDSVHT-SLLTDSI**GKDNIWRIMGVGN 1606
D + + Y+ W+L++ T D+ T + S+ G D+ ++MG+G
Sbjct: 793 DAEIVLAVSDSYAGGRWILDTGA-TFHISTSKDAFSTYEKHSGSVLMGNDHACQVMGIGT 851
Query: 1607 IQI-MLDRQVQTLSNV-HV-DIKKNLLSLEVLEAQ*CKLSNGDGSITVTKDSTTISNEN 1774
++I M D V+TL++V H+ ++KKNL+SL L+ + + S G + V + T+ N
Sbjct: 852 VRIKMFDGIVRTLTDVRHIPEMKKNLISLSTLDKKGFRYSAEGGVLKVFSGALTVIRGN 910
Score = 44.3 bits (103), Expect(4) = 7e-88
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +2
Query: 2498 GESVDYSTLRIFDCLAYSFVDSQQMNKLESKSKRCTFIGFTKSVKG 2635
G DYS LR+F C AY+ V+ KL+ ++K+C F+G+ + VKG
Sbjct: 1158 GSPADYSGLRVFGCPAYAHVNE---GKLKPRAKKCIFLGYGQGVKG 1200
Score = 33.1 bits (74), Expect(4) = 7e-88
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Frame = +1
Query: 532 CSYCLLHGKSLRSRFHCRE--LTRFSQFSTIGIRVMGSNTATTTFVVKKFDGKSNFLL*K 705
C CL+ FH R+ L+ +F ++M ++ ++T + V+KF GK++F L +
Sbjct: 499 CELCLI--------FHIRKKILSFIQRF-----QIMATSVSSTKYDVEKFTGKNSFSLWR 545
Query: 706 IQVAALLV-KGFTKPL 750
I++ A+LV +G K L
Sbjct: 546 IKMRAVLVQQGLLKAL 561
>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
Length = 2351
Score = 194 bits (492), Expect(4) = 1e-87
Identities = 107/241 (44%), Positives = 142/241 (58%), Gaps = 5/241 (2%)
Frame = +1
Query: 1786 LYKMIGSVIVGDASTTMED-----TTRL*HMHLEHMSKRCLQALCDKGVLPGIKHFKLGQ 1950
LY + GS + G A + D TT+L HM L HMS+R L L +G+L G KL
Sbjct: 894 LYFLDGSSVTGVAGVSSSDDLDSDTTKLWHMRLGHMSERGLSVLSKRGLLSGQCTGKLNF 953
Query: 1951 CKFCIMGRRHRVAFSTS*HKTKGLLDLIHTDVWGTSPIVFIGGTRYYVIFIYNFSRKIWV 2130
C+ C+ G++ RV FST HKTKG +D H+D+WG SP + GG RY + FI ++SRK+WV
Sbjct: 954 CEHCVFGKQTRVKFSTGIHKTKGTVDYFHSDLWGPSPTISKGGYRYLLTFIDDYSRKVWV 1013
Query: 2131 YLLKKNSEIFHNFKE*KIMVEK*K**KVKFLRSDNDGEYTSAEFKEYLTGEGIEH*FSIS 2310
Y LK E+ NFK+ K ++E K+K R+DN E+ S EF E+ EGI ++
Sbjct: 1014 YFLKSKYEVLINFKQFKALIENQTGKKIKRFRTDNGLEFCSGEFNEFCKNEGIVRHRTVR 1073
Query: 2311 RQP*QNGITEHMNWTLTEHAHNMRLQTDMLGGFRTEAASHVRYLVNRSPSTVVDL*IPEE 2490
R P QNG+ E MN TL E A MR + F EA + YLVNRSPST ++L PEE
Sbjct: 1074 RTPQQNGVAERMNRTLLERARCMRSNAGLGEEFWAEAVNTACYLVNRSPSTAIELKTPEE 1133
Query: 2491 M 2493
+
Sbjct: 1134 V 1134
Score = 127 bits (319), Expect(4) = 1e-87
Identities = 108/359 (30%), Positives = 176/359 (49%), Gaps = 18/359 (5%)
Frame = +2
Query: 752 GKENKPSKLEDEKWNDIDFRAKATIILCLPDEVLYNVMNPTI--GLWCKLESPYMTKSLS 925
GK+ PS L +E+ +D+ RA + I+LCL DEVL V + GLW +LES YMTKSL+
Sbjct: 542 GKDKLPSTLSEEQKDDMLERAHSAILLCLGDEVLREVADEKTASGLWLRLESKYMTKSLT 601
Query: 926 NKLLMKKQLYSLRMKVQYYISTLFTRS*SIYWLXXXXXXXXXXQ-----VLC*TLPSSYD 1090
N+L +K++LY+L+M+ +S + SI + VLC +LP SY+
Sbjct: 602 NRLYLKQRLYALKMEEGTPVSQHLDKFNSIIMDLNNIDNKIDDEDQAIIVLC-SLPPSYE 660
Query: 1091 CLATTIMYGKETIELDDVR*MLQNQELRKNKESTKV----ALGLFAKNXXXXXXXXXXXX 1258
T+MYG++ + L++V+ L + ELRK V GL A+
Sbjct: 661 NFVDTMMYGRDDLTLEEVKNALSSSELRKKITGKVVENNEGEGLVARGRSKAKGGSSSKS 720
Query: 1259 XXXXXXXN--VCFYSKKPGHIKKNCYKYKEMQKKDDKESDGASGXXXXXXXXXXXXXXXC 1432
C+Y KK GH+K +C K KE + ++++D A+
Sbjct: 721 HPRSQSKKRIQCYYCKKYGHMKVDCPKRKEKSESQEQQNDRAN---------VADADSSS 771
Query: 1433 DVLTTESGKERYSD-TWLLNSSVHTTCAQKGNDSVHT-SLLTDSI**GKDNIWRIMGVGN 1606
D + + Y+ W+L++ T D+ T + S+ G D+ ++MG+G
Sbjct: 772 DAEIVLAVSDSYAGGRWILDTGA-TFHISTSKDAFSTYEKHSGSVLMGNDHACQVMGIGT 830
Query: 1607 IQI-MLDRQVQTLSNV-HV-DIKKNLLSLEVLEAQ*CKLSNGDGSITVTKDSTTISNEN 1774
++I M D V+TL++V H+ ++KKNL+SL L+ + + S G + V + T+ N
Sbjct: 831 VRIKMFDGIVRTLTDVRHIPEMKKNLISLSTLDKKGFRYSAEGGVLKVFSGALTVIRGN 889
Score = 44.3 bits (103), Expect(4) = 1e-87
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +2
Query: 2498 GESVDYSTLRIFDCLAYSFVDSQQMNKLESKSKRCTFIGFTKSVKG 2635
G DYS LR+F C AY+ V+ KL+ ++K+C F+G+ + VKG
Sbjct: 1137 GSPADYSGLRVFGCPAYAHVNE---GKLKPRAKKCIFLGYGQGVKG 1179
Score = 32.0 bits (71), Expect(4) = 1e-87
Identities = 16/43 (37%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Frame = +1
Query: 625 RVMGSNTATTTFVVKKFDGKSNFLL*KIQVAALLV-KGFTKPL 750
++M ++ ++T + V+KF GK++F L +I++ A+LV +G K L
Sbjct: 498 QIMATSVSSTKYDVEKFTGKNSFSLWRIKMRAVLVQQGLLKAL 540
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 185 bits (469), Expect(3) = 5e-77
Identities = 98/242 (40%), Positives = 145/242 (59%), Gaps = 4/242 (1%)
Frame = +1
Query: 1780 ANLYKMIGSVI----VGDASTTMEDTTRL*HMHLEHMSKRCLQALCDKGVLPGIKHFKLG 1947
+NLY ++G + A+++ E+TT + H L HMS+R L+ L ++ +L G+K L
Sbjct: 397 SNLYMLLGDTLQEADASVAASSQEETTMMWHQRLGHMSERGLKVLAERNLLHGLKAVNLP 456
Query: 1948 QCKFCIMGRRHRVAFSTS*HKTKGLLDLIHTDVWGTSPIVFIGGTRYYVIFIYNFSRKIW 2127
C+ C++ ++HR+ F+ ++K +LDLIH+DVW SP + +GG RY+V FI ++SR++W
Sbjct: 457 FCEHCVISKQHRLKFARVTTRSKHILDLIHSDVW-ESPEISLGGARYFVSFIDDYSRRLW 515
Query: 2128 VYLLKKNSEIFHNFKE*KIMVEK*K**KVKFLRSDNDGEYTSAEFKEYLTGEGIEH*FSI 2307
VY +KK S++F FK K +E K+K LR+DN GEY EF + EGI F++
Sbjct: 516 VYPIKKKSDVFPVFKAFKAQIELETRKKIKCLRTDNGGEYIDGEFLAFCKQEGIVRQFTV 575
Query: 2308 SRQP*QNGITEHMNWTLTEHAHNMRLQTDMLGGFRTEAASHVRYLVNRSPSTVVDL*IPE 2487
+ P QNG+ E MN TL E M M F EA Y++NRSPST +DL P
Sbjct: 576 AHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPM 635
Query: 2488 EM 2493
EM
Sbjct: 636 EM 637
Score = 103 bits (256), Expect(3) = 5e-77
Identities = 98/358 (27%), Positives = 158/358 (44%), Gaps = 23/358 (6%)
Frame = +2
Query: 758 ENKPSKLEDEKWNDIDFRAKATIILCLPDEVLYNVMNPTIG--LWCKLESPYMTKSLSNK 931
+ +P+ + DEKW ++D A A + L + D VL ++ +W L Y KSL N+
Sbjct: 36 DGRPADITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNR 95
Query: 932 LLMKKQLYSLRM----KVQYYISTLFTRS*SIYWLXXXXXXXXXXQVLC*TLPSSYDCLA 1099
+ +K++LY+LRM V +I+TL T + ++L +LP SYD L
Sbjct: 96 IFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLI 155
Query: 1100 TTIMYGK--ETIELDDVR-*MLQNQELRKNK----ESTKVALGLF----AKNXXXXXXXX 1246
I +T+ DDV +L+ + RKNK ES+K A L
Sbjct: 156 INITNNNITDTLHFDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQ 215
Query: 1247 XXXXXXXXXXXNV-CFYSKKPGHIKKNCYKYKEMQKKDDKESDGASGXXXXXXXXXXXXX 1423
N+ C+ GH+KK C+ K K +K S+ ++
Sbjct: 216 NHGRSKSRRKKNIKCYGCGMKGHVKKECWNIK---KNGEKNSEASTSQGCVASTSDDGEI 272
Query: 1424 XXCDVLTTESGKERYSDTWLLNSSV--HTTCAQKGNDSVHTSLLTDSI**GKDNIWRIMG 1597
+ T+ G+ R +D W+++S H T + S + + S+ G D+ I G
Sbjct: 273 LYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFFS-YEPISEGSVYMGNDHALEIAG 331
Query: 1598 VGNIQI-MLDRQVQTLSNV-HV-DIKKNLLSLEVLEAQ*CKLSNGDGSITVTKDSTTI 1762
VG I++ M D V+ + V HV +KKNLLS+ L+ CK+ G + V K + +
Sbjct: 332 VGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVV 389
Score = 53.1 bits (126), Expect(3) = 5e-77
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +2
Query: 2495 RGESVDYSTLRIFDCLAYSFVDSQQMNKLESKSKRCTFIGFTKSVKG 2635
+G+ VDYS+L +F C Y +SQ+ KL+ KS++C F+G+ +VKG
Sbjct: 639 KGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKG 685
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 184 bits (466), Expect(3) = 1e-76
Identities = 98/242 (40%), Positives = 144/242 (59%), Gaps = 4/242 (1%)
Frame = +1
Query: 1780 ANLYKMIGSVI----VGDASTTMEDTTRL*HMHLEHMSKRCLQALCDKGVLPGIKHFKLG 1947
+NLY ++G + A+ + E+TT + H L HMS+R L+ L ++ +L G+K L
Sbjct: 397 SNLYMLLGDTLQEADASVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLP 456
Query: 1948 QCKFCIMGRRHRVAFSTS*HKTKGLLDLIHTDVWGTSPIVFIGGTRYYVIFIYNFSRKIW 2127
C+ C++ ++HR+ F+ ++K +LDLIH+DVW SP + +GG RY+V FI ++SR++W
Sbjct: 457 FCEHCVISKQHRLKFARVTTRSKHILDLIHSDVW-ESPELSLGGARYFVSFIDDYSRRLW 515
Query: 2128 VYLLKKNSEIFHNFKE*KIMVEK*K**KVKFLRSDNDGEYTSAEFKEYLTGEGIEH*FSI 2307
VY +KK S++F FK K +E K+K LR+DN GEY EF + EGI F++
Sbjct: 516 VYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTV 575
Query: 2308 SRQP*QNGITEHMNWTLTEHAHNMRLQTDMLGGFRTEAASHVRYLVNRSPSTVVDL*IPE 2487
+ P QNG+ E MN TL E M M F EA Y++NRSPST +DL P
Sbjct: 576 AHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPM 635
Query: 2488 EM 2493
EM
Sbjct: 636 EM 637
Score = 103 bits (256), Expect(3) = 1e-76
Identities = 98/358 (27%), Positives = 158/358 (44%), Gaps = 23/358 (6%)
Frame = +2
Query: 758 ENKPSKLEDEKWNDIDFRAKATIILCLPDEVLYNVMNPTIG--LWCKLESPYMTKSLSNK 931
+ +P+ + DEKW ++D A A + L + D VL ++ +W L Y KSL N+
Sbjct: 36 DGRPADITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNR 95
Query: 932 LLMKKQLYSLRM----KVQYYISTLFTRS*SIYWLXXXXXXXXXXQVLC*TLPSSYDCLA 1099
+ +K++LY+LRM V +I+TL T + ++L +LP SYD L
Sbjct: 96 IFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLI 155
Query: 1100 TTIMYGK--ETIELDDVR-*MLQNQELRKNK----ESTKVALGLF----AKNXXXXXXXX 1246
I +T+ DDV +L+ + RKNK ES+K A L
Sbjct: 156 INITNNNIADTLHFDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQ 215
Query: 1247 XXXXXXXXXXXNV-CFYSKKPGHIKKNCYKYKEMQKKDDKESDGASGXXXXXXXXXXXXX 1423
N+ C+ GH+KK C+ K K +K S+ ++
Sbjct: 216 NHGRSKSRRKKNIKCYGCGMKGHVKKECWNIK---KNGEKNSEASTSQGCVASTSDDGEI 272
Query: 1424 XXCDVLTTESGKERYSDTWLLNSSV--HTTCAQKGNDSVHTSLLTDSI**GKDNIWRIMG 1597
+ T+ G+ R +D W+++S H T + S + + S+ G D+ I G
Sbjct: 273 LYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFFS-YEPISEGSVYMGNDHALEIAG 331
Query: 1598 VGNIQI-MLDRQVQTLSNV-HV-DIKKNLLSLEVLEAQ*CKLSNGDGSITVTKDSTTI 1762
VG I++ M D V+ + V HV +KKNLLS+ L+ CK+ G + V K + +
Sbjct: 332 VGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVV 389
Score = 53.1 bits (126), Expect(3) = 1e-76
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +2
Query: 2495 RGESVDYSTLRIFDCLAYSFVDSQQMNKLESKSKRCTFIGFTKSVKG 2635
+G+ VDYS+L +F C Y +SQ+ KL+ KS++C F+G+ +VKG
Sbjct: 639 KGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKG 685
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 185 bits (469), Expect(3) = 2e-76
Identities = 98/242 (40%), Positives = 145/242 (59%), Gaps = 4/242 (1%)
Frame = +1
Query: 1780 ANLYKMIGSVI----VGDASTTMEDTTRL*HMHLEHMSKRCLQALCDKGVLPGIKHFKLG 1947
+NLY ++G + A+ + E+TT + H L HMS+R L+ L ++ +L G+K L
Sbjct: 397 SNLYMLLGDTLQEADASVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLP 456
Query: 1948 QCKFCIMGRRHRVAFSTS*HKTKGLLDLIHTDVWGTSPIVFIGGTRYYVIFIYNFSRKIW 2127
C+ C++ ++HR+ F+ ++K +LDLIH+DVW SP + +GG RY+V FI ++SR++W
Sbjct: 457 FCEHCVISKQHRLKFARVTTRSKHILDLIHSDVW-ESPKLSLGGARYFVSFIDDYSRRLW 515
Query: 2128 VYLLKKNSEIFHNFKE*KIMVEK*K**KVKFLRSDNDGEYTSAEFKEYLTGEGIEH*FSI 2307
VY +KK S++F FK K +E K+K LR+DN GEY EF + EGI F++
Sbjct: 516 VYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTV 575
Query: 2308 SRQP*QNGITEHMNWTLTEHAHNMRLQTDMLGGFRTEAASHVRYLVNRSPSTVVDL*IPE 2487
+ P QNG+ E MN TL E M +M F EA Y++NRSPST +DL P
Sbjct: 576 AHTPQQNGVAERMNRTLLERTRAMLKTAEMAKSFWAEAVKTACYVINRSPSTTIDLKTPM 635
Query: 2488 EM 2493
EM
Sbjct: 636 EM 637
Score = 101 bits (251), Expect(3) = 2e-76
Identities = 97/358 (27%), Positives = 158/358 (44%), Gaps = 23/358 (6%)
Frame = +2
Query: 758 ENKPSKLEDEKWNDIDFRAKATIILCLPDEVLYNVMNPTIG--LWCKLESPYMTKSLSNK 931
+ +P+ + DEKW ++D A A + L + D VL ++ +W L Y KSL N+
Sbjct: 36 DGRPADITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNR 95
Query: 932 LLMKKQLYSLRM----KVQYYISTLFTRS*SIYWLXXXXXXXXXXQVLC*TLPSSYDCLA 1099
+ +K++LY+LRM V +I+TL T + ++L +LP SYD L
Sbjct: 96 IFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLI 155
Query: 1100 TTIMYGK--ETIELDDVR-*MLQNQELRKNK----ESTKVALGLF----AKNXXXXXXXX 1246
I +T+ DDV +L+ + RKNK ES+K A L
Sbjct: 156 INITNNNIADTLHFDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQ 215
Query: 1247 XXXXXXXXXXXNV-CFYSKKPGHIKKNCYKYKEMQKKDDKESDGASGXXXXXXXXXXXXX 1423
N+ C+ GH+KK C+ K K +K S+ +
Sbjct: 216 NHGRSKSRRKNNIKCYGCGMKGHVKKECWNNK---KNGEKNSEATTSQGCVASTSDDGEI 272
Query: 1424 XXCDVLTTESGKERYSDTWLLNSSV--HTTCAQKGNDSVHTSLLTDSI**GKDNIWRIMG 1597
+ T+ G+ + +D W+++S H T + S + + S+ G D+ I G
Sbjct: 273 LYSEAATSSEGERQLNDVWIMDSGATWHMTPHRDWFYS-YEPISEGSVYMGNDHALEIAG 331
Query: 1598 VGNIQI-MLDRQVQTLSNV-HV-DIKKNLLSLEVLEAQ*CKLSNGDGSITVTKDSTTI 1762
VG I++ M D V+ + V HV +KKNLLS+ L+ CK+ + G + V K + +
Sbjct: 332 VGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVV 389
Score = 53.1 bits (126), Expect(3) = 2e-76
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +2
Query: 2495 RGESVDYSTLRIFDCLAYSFVDSQQMNKLESKSKRCTFIGFTKSVKG 2635
+G+ VDYS+L +F C Y +SQ+ KL+ KS++C F+G+ +VKG
Sbjct: 639 KGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKG 685
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 181 bits (459), Expect(3) = 2e-76
Identities = 102/241 (42%), Positives = 147/241 (60%), Gaps = 3/241 (1%)
Frame = +1
Query: 1780 ANLYKMIGSVIV-GDA--STTMEDTTRL*HMHLEHMSKRCLQALCDKGVLPGIKHFKLGQ 1950
ANL+ + G + DA ++ E++T + H+ L HMS++ L+ L ++ +LPG+K L
Sbjct: 398 ANLFMLKGETLQEADACVASNGEESTMMWHLKLGHMSEQGLKILSERKLLPGLKSVSLPF 457
Query: 1951 CKFCIMGRRHRVAFSTS*HKTKGLLDLIHTDVWGTSPIVFIGGTRYYVIFIYNFSRKIWV 2130
C+ C+ ++HR+ FS S ++K +LDLIH+DVW SP + +GG +Y V FI ++SR+ WV
Sbjct: 458 CEHCVTSKQHRLKFSRSIARSKCILDLIHSDVW-ESPDISMGGAKYMVTFIDDYSRRCWV 516
Query: 2131 YLLKKNSEIFHNFKE*KIMVEK*K**KVKFLRSDNDGEYTSAEFKEYLTGEGIEH*FSIS 2310
Y +KK S++F FKE K VE K+K LR+DN GEYT EF + EGI+ F+++
Sbjct: 517 YPIKKKSDVFPVFKEYKAWVELESGKKIKCLRTDNGGEYTDGEFLAFCKQEGIQRQFTVA 576
Query: 2311 RQP*QNGITEHMNWTLTEHAHNMRLQTDMLGGFRTEAASHVRYLVNRSPSTVVDL*IPEE 2490
P QNG+ E MN TLTE M + F EAA Y+VNRSPST + L E
Sbjct: 577 YTPQQNGVAERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNRSPSTAIGLKTAME 636
Query: 2491 M 2493
M
Sbjct: 637 M 637
Score = 109 bits (273), Expect(3) = 2e-76
Identities = 97/356 (27%), Positives = 165/356 (46%), Gaps = 23/356 (6%)
Frame = +2
Query: 764 KPSKLEDEKWNDIDFRAKATIILCLPDEVLYNVM--NPTIGLWCKLESPYMTKSLSNKLL 937
+P ++ D+KWN++D A + + L L D VL +V N +W L Y KSL NK+
Sbjct: 38 RPMEITDDKWNEVDGNAISDLHLALADGVLSSVAEKNTAKEIWDTLTKLYEAKSLHNKIF 97
Query: 938 MKKQLYSLRM----KVQYYISTLFTRS*SIYWLXXXXXXXXXXQVLC*TLPSSYDCLATT 1105
+K++LY+LRM V +I+TL T + L ++L +LP SYD L
Sbjct: 98 LKRKLYTLRMAESTMVTDHINTLKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQLIIN 157
Query: 1106 IMYGK--ETIELDDVR*MLQNQE-LRKNKESTK--------VALGLFAKNXXXXXXXXXX 1252
+ E++ DDV + N+E RKNKE+ + +++
Sbjct: 158 LTNNNPVESLVFDDVAASVLNEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGSQNQ 217
Query: 1253 XXXXXXXXXNV-CFYSKKPGHIKKNCYKYKEMQKKDDKESDGASGXXXXXXXXXXXXXXX 1429
NV C+ K GH+KK C + ++++ KE + ++
Sbjct: 218 GRSKFRGKKNVKCYNCGKKGHVKKEC--WSNQKRREGKEPETSNAQGCVASTSDDGEILY 275
Query: 1430 CDVLTTESGKERYSDTWLLNSSV--HTTCAQKGNDSVHTSLLTDSI**GKDNIWRIMGVG 1603
+ T G++R SD WL++S H T ++ + + + S+ G D+ I G+G
Sbjct: 276 SEATTVSEGRKRLSDVWLIDSGATWHMTSRREWFHT-YEPISGGSVYMGNDHALEIAGIG 334
Query: 1604 NIQI-MLDRQVQTLSNV-HVD-IKKNLLSLEVLEAQ*CKLSNGDGSITVTKDSTTI 1762
I+I M D ++T+ V HV+ +KKNLLSL +++ K +G + + K + +
Sbjct: 335 TIKIKMFDGTIRTIGEVRHVNGLKKNLLSLGQMDSHGYKTHVENGIMKIVKGALVL 390
Score = 48.1 bits (113), Expect(3) = 2e-76
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +2
Query: 2498 GESVDYSTLRIFDCLAYSFVDSQQMNKLESKSKRCTFIGFTKSVKG 2635
G+ DYS L F C Y ++Q+ KL++KS+RC F+G+ VKG
Sbjct: 640 GKPADYSYLHAFGCPMYVMYNAQERTKLDAKSRRCIFLGYADGVKG 685
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 179 bits (453), Expect(3) = 3e-76
Identities = 101/241 (41%), Positives = 147/241 (60%), Gaps = 3/241 (1%)
Frame = +1
Query: 1780 ANLYKMIGSVIV-GDA--STTMEDTTRL*HMHLEHMSKRCLQALCDKGVLPGIKHFKLGQ 1950
ANL+ + G + DA ++ E++T + H+ L HMS++ L+ L ++ + PG+K L
Sbjct: 398 ANLFMLKGETLQEADACVASNGEESTMMWHLKLGHMSEQGLKILSERKLPPGLKSVSLPF 457
Query: 1951 CKFCIMGRRHRVAFSTS*HKTKGLLDLIHTDVWGTSPIVFIGGTRYYVIFIYNFSRKIWV 2130
C+ C+ ++HR+ FS S ++K +LDLIH+DVW SP + +GG +Y V FI ++SR+ WV
Sbjct: 458 CEHCVTSKQHRLKFSRSIARSKCILDLIHSDVW-ESPDISMGGAKYMVTFIDDYSRRCWV 516
Query: 2131 YLLKKNSEIFHNFKE*KIMVEK*K**KVKFLRSDNDGEYTSAEFKEYLTGEGIEH*FSIS 2310
Y +KK S++F FKE K VE K+K LR+DN GEYT +EF + EGI+ F+++
Sbjct: 517 YPIKKKSDVFPVFKEYKAWVELESGKKIKCLRTDNGGEYTDSEFLAFCKQEGIQRQFTVA 576
Query: 2311 RQP*QNGITEHMNWTLTEHAHNMRLQTDMLGGFRTEAASHVRYLVNRSPSTVVDL*IPEE 2490
P QNG+ E MN TLTE M + F EAA Y+VNRSPST + L E
Sbjct: 577 YTPQQNGVAERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNRSPSTAIGLKTAME 636
Query: 2491 M 2493
M
Sbjct: 637 M 637
Score = 113 bits (282), Expect(3) = 3e-76
Identities = 98/356 (27%), Positives = 167/356 (46%), Gaps = 23/356 (6%)
Frame = +2
Query: 764 KPSKLEDEKWNDIDFRAKATIILCLPDEVLYNVM--NPTIGLWCKLESPYMTKSLSNKLL 937
+P ++ D+KWN++D A + + L L D VL +V N +W L Y KSL NK+
Sbjct: 38 RPMEITDDKWNEVDSNAISDLHLALADGVLSSVAEKNTAKEIWDTLTKLYEAKSLHNKIF 97
Query: 938 MKKQLYSLRM----KVQYYISTLFTRS*SIYWLXXXXXXXXXXQVLC*TLPSSYDCLATT 1105
+K++LY+LRM V +I+TL T + L ++L +LP SYD L
Sbjct: 98 LKRKLYTLRMAESTMVTDHINTLKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQLIIN 157
Query: 1106 IMYGK--ETIELDDVR*MLQNQE-LRKNKESTK--------VALGLFAKNXXXXXXXXXX 1252
+ +++ DDV + N+E RKNKE+ + +++
Sbjct: 158 LTNNNPVDSLVFDDVAASVLNEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGSQNH 217
Query: 1253 XXXXXXXXXNV-CFYSKKPGHIKKNCYKYKEMQKKDDKESDGASGXXXXXXXXXXXXXXX 1429
NV C+ K GH+KK C+ ++ ++ + ES A G
Sbjct: 218 GRSKSRSKKNVKCYNCGKKGHVKKECWSNQKRREGKEPESSNAQGCVASTSDDGEILYSE 277
Query: 1430 CDVLTTESGKERYSDTWLLNSSV--HTTCAQKGNDSVHTSLLTDSI**GKDNIWRIMGVG 1603
+++ G++R SD WL++S H T ++ + + + S+ G D+ I G+G
Sbjct: 278 ATIVS--EGRKRLSDVWLIDSGATWHMTSRREWFHT-YEPISGGSVYMGNDHALEIAGIG 334
Query: 1604 NIQI-MLDRQVQTLSNV-HVD-IKKNLLSLEVLEAQ*CKLSNGDGSITVTKDSTTI 1762
I+I M D ++T+ V HV+ +KKNLLSL +++ CK +G + + K + +
Sbjct: 335 TIKIKMFDGTIRTIEEVRHVNGLKKNLLSLGQMDSHGCKTHVENGIMKIVKGALVL 390
Score = 46.6 bits (109), Expect(3) = 3e-76
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +2
Query: 2498 GESVDYSTLRIFDCLAYSFVDSQQMNKLESKSKRCTFIGFTKSVKG 2635
G+ DYS L F C Y ++Q+ KL+ KS++C F+G+ VKG
Sbjct: 640 GKPADYSYLHAFGCPVYVMYNAQERTKLDPKSRKCIFLGYADGVKG 685
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 187 bits (476), Expect(3) = 3e-76
Identities = 100/242 (41%), Positives = 145/242 (59%), Gaps = 4/242 (1%)
Frame = +1
Query: 1780 ANLYKMIGSVI----VGDASTTMEDTTRL*HMHLEHMSKRCLQALCDKGVLPGIKHFKLG 1947
+NLY ++G + A+ + E+TT + H L HMS+R L+ L ++ +L G+K L
Sbjct: 397 SNLYMLLGDTLQEADASVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLP 456
Query: 1948 QCKFCIMGRRHRVAFSTS*HKTKGLLDLIHTDVWGTSPIVFIGGTRYYVIFIYNFSRKIW 2127
C+ C+M ++HR+ F+ ++K +LDLIH+DVW SP + +GG RY+V FI ++SR++W
Sbjct: 457 FCEHCVMSKQHRLKFARVTTRSKHILDLIHSDVW-ESPEISLGGARYFVSFIDDYSRRLW 515
Query: 2128 VYLLKKNSEIFHNFKE*KIMVEK*K**KVKFLRSDNDGEYTSAEFKEYLTGEGIEH*FSI 2307
VY +KK S++F FK K +E K+K LR+DN GEY EF + EGI F++
Sbjct: 516 VYPIKKKSDVFPVFKAFKAQIELETEKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTV 575
Query: 2308 SRQP*QNGITEHMNWTLTEHAHNMRLQTDMLGGFRTEAASHVRYLVNRSPSTVVDL*IPE 2487
+ P QNG+ E MN TL E M M F EAA Y++NRSPST +DL P
Sbjct: 576 AHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAAKTACYVINRSPSTAIDLKTPM 635
Query: 2488 EM 2493
EM
Sbjct: 636 EM 637
Score = 97.8 bits (242), Expect(3) = 3e-76
Identities = 96/358 (26%), Positives = 157/358 (43%), Gaps = 23/358 (6%)
Frame = +2
Query: 758 ENKPSKLEDEKWNDIDFRAKATIILCLPDEVLYNVMNPTIG--LWCKLESPYMTKSLSNK 931
+ + + + DEKW ++D A A + L + D VL ++ +W L Y KSL N+
Sbjct: 36 DGRLADITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNR 95
Query: 932 LLMKKQLYSLRM----KVQYYISTLFTRS*SIYWLXXXXXXXXXXQVLC*TLPSSYDCLA 1099
+ +K++LY+L+M V +I+TL T + ++L +LP SYD L
Sbjct: 96 IFLKRRLYTLQMGESTSVTDHINTLNTLFSQLTASDFKIAKNERAELLLQSLPDSYDQLI 155
Query: 1100 TTIMYGK--ETIELDDVR-*MLQNQELRKNK----ESTKVALGLF----AKNXXXXXXXX 1246
I +T+ DDV +L+ + RKNK ES+K A L
Sbjct: 156 INITNNNIADTLHFDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQ 215
Query: 1247 XXXXXXXXXXXNV-CFYSKKPGHIKKNCYKYKEMQKKDDKESDGASGXXXXXXXXXXXXX 1423
N+ C+ GH+KK C+ K K +K S+ ++
Sbjct: 216 NHGRSKSRRKKNIKCYGCGMKGHVKKECWNIK---KNGEKNSEASTSQGCVASTSDDGEI 272
Query: 1424 XXCDVLTTESGKERYSDTWLLNSSV--HTTCAQKGNDSVHTSLLTDSI**GKDNIWRIMG 1597
+ T+ G+ R +D W+++S H T + S + + S+ G D+ I G
Sbjct: 273 LYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFYS-YEPISEGSVYMGNDHALEIAG 331
Query: 1598 VGNIQI-MLDRQVQTLSNV-HV-DIKKNLLSLEVLEAQ*CKLSNGDGSITVTKDSTTI 1762
VG I++ M D V+ + V HV +KKNLLS+ L+ CK+ G + V K + +
Sbjct: 332 VGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVV 389
Score = 53.1 bits (126), Expect(3) = 3e-76
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +2
Query: 2495 RGESVDYSTLRIFDCLAYSFVDSQQMNKLESKSKRCTFIGFTKSVKG 2635
+G+ VDYS+L +F C Y +SQ+ KL+ KS++C F+G+ +VKG
Sbjct: 639 KGKPVDYSSLHVFGCPVYVMYNSQEKTKLDPKSRKCIFLGYADNVKG 685
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 188 bits (477), Expect(3) = 2e-73
Identities = 102/242 (42%), Positives = 148/242 (61%), Gaps = 4/242 (1%)
Frame = +1
Query: 1780 ANLYKMIGSVI-VGDASTTM---EDTTRL*HMHLEHMSKRCLQALCDKGVLPGIKHFKLG 1947
ANLY ++G + DAS + E+TT + H L HMS+R L+ L ++ ++PG+K L
Sbjct: 397 ANLYMLLGDTWQMADASVAVGSQEETTMMWHRRLGHMSERGLKVLAERNLIPGLKSVSLP 456
Query: 1948 QCKFCIMGRRHRVAFSTS*HKTKGLLDLIHTDVWGTSPIVFIGGTRYYVIFIYNFSRKIW 2127
C+ C++ ++HR+ F+ S ++K +LDLIH+DVW SP V IGG +Y+V FI ++SR++W
Sbjct: 457 FCEHCVISKQHRLKFAKSTARSKHILDLIHSDVW-ESPEVSIGGAKYFVSFIDDYSRRLW 515
Query: 2128 VYLLKKNSEIFHNFKE*KIMVEK*K**KVKFLRSDNDGEYTSAEFKEYLTGEGIEH*FSI 2307
VY +KK S ++ FKE K VE ++K LR+DN GEYT +F + EGI F++
Sbjct: 516 VYPIKKKSGVYSVFKEFKAQVELETGKRIKCLRTDNGGEYTDGDFLAFCKQEGITRQFTV 575
Query: 2308 SRQP*QNGITEHMNWTLTEHAHNMRLQTDMLGGFRTEAASHVRYLVNRSPSTVVDL*IPE 2487
+ P QNG+ E MN TL E M + F EAA Y++NRSPST + L P
Sbjct: 576 AHTPQQNGVAERMNRTLLERTRAMLKTAGLAKSFWAEAAKTACYVINRSPSTAIGLKTPM 635
Query: 2488 EM 2493
EM
Sbjct: 636 EM 637
Score = 85.1 bits (209), Expect(3) = 2e-73
Identities = 87/359 (24%), Positives = 152/359 (42%), Gaps = 24/359 (6%)
Frame = +2
Query: 758 ENKPSKLEDEKWNDIDFRAKATIILCLPDEVLYNVMNPTIG--LWCKLESPYMTKSLSNK 931
+ +P+ + D+K ++D A A + L + D VL ++ +W L Y KSL N+
Sbjct: 36 DGRPADITDDKRKEMDDNAVANLHLAVADSVLSSIAEKKTAKKIWDTLIQLYEVKSLHNR 95
Query: 932 LLMKKQLYSLRMK----VQYYISTLFTRS*SIYWLXXXXXXXXXXQVLC*TLPSSYDCLA 1099
+ +K++LY+ RM + +I+ L T + +VL +LP SYD L
Sbjct: 96 IFLKRRLYTFRMSESTSMPDHINNLNTMFAQLSASDFTIGENERAEVLLQSLPDSYDQLV 155
Query: 1100 TTIMYGK--ETIELDDVR*-MLQNQELRKNKESTK----------VALGLFAKNXXXXXX 1240
I + + +DV +L+ + RKNKE + V G +
Sbjct: 156 INITNNNIVDRLSFNDVAGAILEEESRRKNKEDRQDSSKQMEALTVTRGRSTERGPSGSQ 215
Query: 1241 XXXXXXXXXXXXXNVCFYSKKPGHIKKNCYKYKEMQKKDDKESDGASGXXXXXXXXXXXX 1420
C+ K GH+KK+C+ K K +K S+ ++
Sbjct: 216 NHGRSTSRRKTNLK-CYNCGKRGHLKKDCWSNK---KSGEKSSEASTSQGCVASTSDDGE 271
Query: 1421 XXXCDVLTTESGKERYSDTWLLNSSV--HTTCAQKGNDSVHTSLLTDSI**GKDNIWRIM 1594
+ + GK R +D W+++S H T ++ + + ++ G D+ I+
Sbjct: 272 VLYSEAAVSTKGKNRLTDVWIVDSGATWHMT-PRRDWFCTYEPVSEGNVFMGNDHALEIV 330
Query: 1595 GVGNIQI-MLDRQVQTLSNV-HV-DIKKNLLSLEVLEAQ*CKLSNGDGSITVTKDSTTI 1762
G+G ++I M D ++TL V HV ++ KNLLS+ L+ K G + V K S +
Sbjct: 331 GIGTVKIKMYDGTIRTLQEVRHVKELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVV 389
Score = 55.8 bits (133), Expect(3) = 2e-73
Identities = 23/47 (48%), Positives = 34/47 (72%)
Frame = +2
Query: 2495 RGESVDYSTLRIFDCLAYSFVDSQQMNKLESKSKRCTFIGFTKSVKG 2635
+G+ DYS+LR+F C Y +SQ+ KL+ KS+RCTF+G+ +VKG
Sbjct: 639 KGKPGDYSSLRVFGCPVYVMYNSQERTKLDPKSRRCTFLGYADNVKG 685
>gb|OMO83367.1| Integrase, catalytic core [Corchorus capsularis]
Length = 785
Score = 188 bits (477), Expect(3) = 3e-72
Identities = 97/241 (40%), Positives = 147/241 (60%), Gaps = 5/241 (2%)
Frame = +1
Query: 1786 LYKMIGSVIVGDASTT-----MEDTTRL*HMHLEHMSKRCLQALCDKGVLPGIKHFKLGQ 1950
+Y +IG+ ++G+ + + D T L H+ L HMS++ L L +G+L G + KL
Sbjct: 374 IYTLIGNSVIGEVAVSESLGDSNDRTELWHLRLGHMSEQGLSILSKRGLLDGSECGKLKC 433
Query: 1951 CKFCIMGRRHRVAFSTS*HKTKGLLDLIHTDVWGTSPIVFIGGTRYYVIFIYNFSRKIWV 2130
C+ C++G++ V FS+ H +KG+LD +H+D+WG +P+ RY+V FI ++S+K+WV
Sbjct: 434 CETCVLGKQRGVKFSSGKHTSKGILDYVHSDLWGPAPVESHSRCRYFVTFIDDYSKKVWV 493
Query: 2131 YLLKKNSEIFHNFKE*KIMVEK*K**KVKFLRSDNDGEYTSAEFKEYLTGEGIEH*FSIS 2310
Y LK E+F FKE KIM+EK ++K LR+DN E+ EF E+ EGI ++
Sbjct: 494 YFLKTKDELFDWFKEWKIMIEKHTSRQIKTLRTDNGLEFCGQEFNEFCKKEGILRHHTVR 553
Query: 2311 RQP*QNGITEHMNWTLTEHAHNMRLQTDMLGGFRTEAASHVRYLVNRSPSTVVDL*IPEE 2490
R P QNG+ E MN TL + A +RL + F EA + YLVNRSPST +DL P++
Sbjct: 554 RTPQQNGVAERMNQTLLQRARCIRLNAGLSKKFWAEAVNTTAYLVNRSPSTAIDLKTPQD 613
Query: 2491 M 2493
+
Sbjct: 614 L 614
Score = 96.7 bits (239), Expect(3) = 3e-72
Identities = 94/353 (26%), Positives = 153/353 (43%), Gaps = 17/353 (4%)
Frame = +2
Query: 755 KENKPSKLEDEKWNDIDFRAKATIILCLPDEVLYNVM--NPTIGLWCKLESPYMTKSLSN 928
KE P K D++ +I+ +A + I+L L +EVL V+ T LW L+ YM KSL+N
Sbjct: 16 KEMLPEKSTDKEIKEINSKAHSAILLSLSNEVLREVVAEKDTASLWKALDDKYMKKSLAN 75
Query: 929 KLLMKKQLYSLRM----KVQYYISTLFTRS*SIYWLXXXXXXXXXXQVLC*TLPSSYDCL 1096
+L K++LY+ +M ++ ++ + + + +L +LP S+
Sbjct: 76 RLFQKQRLYTFKMVENTPIKDHLDSFNRIILDLGGVRVKIEDEDLALILLFSLPRSFQNF 135
Query: 1097 ATTIMYGKETIELDDVR*MLQNQELRKNKESTKV--ALGLFAKNXXXXXXXXXXXXXXXX 1270
T++YG++TI L DV+ L ++EL +NK S V GL
Sbjct: 136 RDTMLYGRDTIALKDVKDALLSKEL-QNKVSADVDGEAGLIVTRGRNKEKSSGTTRFRSR 194
Query: 1271 XXXNV----CFYSKKPGHIKKNCYKYKEMQKKDDKESD----GASGXXXXXXXXXXXXXX 1426
V CFY + GH++K+C K+ + ES+ A
Sbjct: 195 SKSRVSRLRCFYCNEKGHLRKDCPDRKKGNSSEKMESNVKAMVAIVQEGSSLVETSDDEV 254
Query: 1427 XCDVLTTESGKERYSDTWLLNSSVHTTCAQKGNDSVHTSLLTDSI**GKDNIWRIMGVGN 1606
DVLT + ++TW+L++S N S+ G + G G+
Sbjct: 255 GTDVLTVSTTGS--ANTWVLDTSASYHMTFSRNLFTTFKEWNGSVMLGDKTTLTVKGSGS 312
Query: 1607 IQIML-DRQVQTLSNVHVDIKKNLLSLEVLEAQ*CKLSNGDGSITVTKDSTTI 1762
+QI D ++T V +NL+SL L+ Q K S +G I V+K + TI
Sbjct: 313 VQIKTHDGTIRTFDAWLVPELRNLISLGTLDKQGYKYSGENGQIKVSKGAMTI 365
Score = 40.4 bits (93), Expect(3) = 3e-72
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +2
Query: 2510 DYSTLRIFDCLAYSFVDSQQMNKLESKSKRCTFIGFTKSVKG 2635
DYS LRIF C AY+ V+ KLE ++ +C F+G+ VKG
Sbjct: 621 DYSGLRIFGCPAYAHVND---GKLEPRAIKCIFLGYGTGVKG 659
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 193 bits (490), Expect(3) = 1e-71
Identities = 106/240 (44%), Positives = 144/240 (60%), Gaps = 3/240 (1%)
Frame = +1
Query: 1783 NLYKMIGSVIVGDAST-TMEDTTRL*HMHLEHMSKRCLQALCDKGVLPGIKHFKLGQCKF 1959
N+YK+ GS + G A T ED T L L HMS+R LQ L K L G+ L C++
Sbjct: 370 NMYKLTGSTVEGGAGVCTEEDKTELWRRRLGHMSQRGLQELHKKEQLDGVMSAALEFCRY 429
Query: 1960 CIMGRRHRVAF--STS*HKTKGLLDLIHTDVWGTSPIVFIGGTRYYVIFIYNFSRKIWVY 2133
C +G++ RV+F S+S +K+KG+LD IHTDVWG S + GG RY+V FI +FSRK+W++
Sbjct: 430 CTLGKQTRVSFNLSSSENKSKGVLDYIHTDVWGPSATISKGGARYFVSFIDDFSRKVWIF 489
Query: 2134 LLKKNSEIFHNFKE*KIMVEK*K**KVKFLRSDNDGEYTSAEFKEYLTGEGIEH*FSISR 2313
+K +E+F FKE K V K+K LRSDN GEY +F + EGI F++ +
Sbjct: 490 FMKTKNEVFTKFKEWKAEVGNQTGRKIKCLRSDNGGEYRDKKFLQLCKDEGITRHFTVKK 549
Query: 2314 QP*QNGITEHMNWTLTEHAHNMRLQTDMLGGFRTEAASHVRYLVNRSPSTVVDL*IPEEM 2493
P QNG+ E MN TL E +MR + F EAA+H YL+NRSPS ++ EE+
Sbjct: 550 SPQQNGVAERMNRTLMEKERSMRFHAGLPEEFWAEAANHACYLINRSPSRAINFKCAEEV 609
Score = 73.9 bits (180), Expect(3) = 1e-71
Identities = 82/331 (24%), Positives = 137/331 (41%), Gaps = 20/331 (6%)
Frame = +2
Query: 764 KPSKLEDEKWNDIDFRAKATIILCLPDEVLYNVMNPTIG--LWCKLESPYMTKSLSNKLL 937
KP+ + D W + + K+ I L L D VL ++ W LES Y KS+ NKLL
Sbjct: 17 KPTNMSDVLWTKKNKKTKSCIELHLADNVLLHIGETMTAKEAWENLESVYKGKSIGNKLL 76
Query: 938 MKKQLYSLRMK----VQYYISTLFTRS*SIYWLXXXXXXXXXXQVLC*TLPSSYDCLATT 1105
+K+QL+ L+M+ + +I ++ + +L +LP + TT
Sbjct: 77 LKEQLFGLKMEEGDDLNDHICKFQNCIANLEKVGAKMDDEDTAVMLLHSLPPLFKHFKTT 136
Query: 1106 IMYGKETIELDDVR*MLQNQELRKNKESTKVALGLFAKNXXXXXXXXXXXXXXXXXXXNV 1285
+++ KE I L V ++ + +E + A GL+ +
Sbjct: 137 MIF-KELITLSKVCENPKSYIRLEREEDSSQARGLYVRGKERGRSRNRGGGFQGRGMSKS 195
Query: 1286 ----------CFYSKKPGHIKKNCYKYKEMQKKDDKESDGASGXXXXXXXXXXXXXXXCD 1435
CF P H K+NC ++KE + + G S
Sbjct: 196 KGKGKGKKDGCFIYGSPDHWKRNCKQWKEKK----AQMSGESSQLANVVIGYNDEDGELL 251
Query: 1436 VLTTESGKERYSDTWLLNSS-VHTTCAQKGNDSVHTSLLTDSI**GKDNIWRIMGVGNIQ 1612
++T SG R+ W L+++ TCA + + T S+ G D+ RIMG+G ++
Sbjct: 252 AISTSSGAPRH---WTLDTACTFHTCAHRDWFDTYKEGNTRSVLMGNDSPSRIMGIGMVK 308
Query: 1613 I-MLDRQVQTLSNVH--VDIKKNLLSLEVLE 1696
I M D V+ L NV + +NL+SL ++
Sbjct: 309 IRMHDGIVRALGNVRHTPGLNRNLISLSTMD 339
Score = 56.2 bits (134), Expect(3) = 1e-71
Identities = 25/46 (54%), Positives = 30/46 (65%)
Frame = +2
Query: 2498 GESVDYSTLRIFDCLAYSFVDSQQMNKLESKSKRCTFIGFTKSVKG 2635
G+ VDYS LR+F C AY+ + + KLE KS C FIGF K VKG
Sbjct: 612 GKPVDYSNLRVFGCSAYAHIPKDERTKLEPKSLECLFIGFEKGVKG 657
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 166 bits (419), Expect(3) = 8e-71
Identities = 94/241 (39%), Positives = 131/241 (54%), Gaps = 5/241 (2%)
Frame = +1
Query: 1786 LYKMIGSVIVGDASTT-----MEDTTRL*HMHLEHMSKRCLQALCDKGVLPGIKHFKLGQ 1950
LY + GS + G A +D T+L H+ L HM +R +Q L + +L G K L
Sbjct: 386 LYFLQGSTVTGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEF 445
Query: 1951 CKFCIMGRRHRVAFSTS*HKTKGLLDLIHTDVWGTSPIVFIGGTRYYVIFIYNFSRKIWV 2130
C+ C+ G+ HR F + H+TKG LD IH+D WG + +GG R++V I ++SR WV
Sbjct: 446 CEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWV 505
Query: 2131 YLLKKNSEIFHNFKE*KIMVEK*K**KVKFLRSDNDGEYTSAEFKEYLTGEGIEH*FSIS 2310
Y++K SE F FKE KI++E K+K LR+DN E+ +EF ++ EGI ++
Sbjct: 506 YMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVR 565
Query: 2311 RQP*QNGITEHMNWTLTEHAHNMRLQTDMLGGFRTEAASHVRYLVNRSPSTVVDL*IPEE 2490
P QNG+ E MN TL E A M + F EA S YL+NR P T + P E
Sbjct: 566 NTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPME 625
Query: 2491 M 2493
M
Sbjct: 626 M 626
Score = 115 bits (287), Expect(3) = 8e-71
Identities = 97/336 (28%), Positives = 164/336 (48%), Gaps = 15/336 (4%)
Frame = +2
Query: 800 IDFRAKATIILCLPDEVLYNVMNP--TIGLWCKLESPYMTKSLSNKLLMKKQLYSLRM-- 967
++ +A +TI+LCL D+V+ V + GLW KLES YMTKSL+NKLL+K++L+ LRM
Sbjct: 52 LEEKAHSTIMLCLADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAE 111
Query: 968 --KVQYYISTLFTRS*SIYWLXXXXXXXXXXQVLC*TLPSSYDCLATTIMYGKETIELDD 1141
+++ ++ L T + + +L +LP S++ + + GK+T+ L++
Sbjct: 112 GTQLREHLEQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEE 171
Query: 1142 VR*MLQNQELRKNKESTKVAL---GLF--AKNXXXXXXXXXXXXXXXXXXXNVCFYSKKP 1306
VR L ++ELR T + GLF ++ +VC Y K+
Sbjct: 172 VRSALHSRELRHKANGTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGAKPDDVCNYCKEK 231
Query: 1307 GHIKKNCYKYKEMQKKDDKESDGASGXXXXXXXXXXXXXXXCDVLTTESGKERYSDTWLL 1486
GH K +C K K K+ +K+S A+ D+ +SD W+L
Sbjct: 232 GHWKFDCPKKK---KQSEKQSVSAAVAEEDTNSEE-------DIALVADEHTHHSDVWVL 281
Query: 1487 NSSV-HTTCAQKGNDSVHTSLLTDSI**GKDNIWRIMGVGNIQIML-DRQVQTLSNV-HV 1657
+S + C ++ + + + SI ++ +++G G+I+I D TL+ V HV
Sbjct: 282 DSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHV 341
Query: 1658 DI-KKNLLSLEVLEAQ*CKLSNGDGSITVTKDSTTI 1762
+ KNL+SL +L+++ S DG + V K S I
Sbjct: 342 PLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLI 377
Score = 39.7 bits (91), Expect(3) = 8e-71
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +2
Query: 2498 GESVDYSTLRIFDCLAYSFVDSQQMNKLESKSKRCTFIGFTKSVKG 2635
G++ DYS L+ F C AY V KLE ++K+ F+G+ VKG
Sbjct: 629 GKAADYSNLKAFGCTAYYHVSE---GKLEPRAKKGVFVGYGDGVKG 671
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 177 bits (449), Expect(3) = 4e-70
Identities = 96/241 (39%), Positives = 142/241 (58%), Gaps = 3/241 (1%)
Frame = +1
Query: 1780 ANLYKMIGSVIV---GDASTTMEDTTRL*HMHLEHMSKRCLQALCDKGVLPGIKHFKLGQ 1950
ANLY + G + + D+T L H L HMS + ++ L ++ ++PG+ L
Sbjct: 388 ANLYMLKGETLQEAEASVAACSPDSTLLWHQKLGHMSDQGMKILVEQKLIPGLTKVSLPL 447
Query: 1951 CKFCIMGRRHRVAFSTS*HKTKGLLDLIHTDVWGTSPIVFIGGTRYYVIFIYNFSRKIWV 2130
C+ CI ++HR+ FSTS + K +L+L+H+DVW +P+ +GG +Y+V FI ++SR+ WV
Sbjct: 448 CEHCITSKQHRLKFSTSNSRGKVVLELVHSDVW-QAPVPSLGGAKYFVSFIDDYSRRCWV 506
Query: 2131 YLLKKNSEIFHNFKE*KIMVEK*K**KVKFLRSDNDGEYTSAEFKEYLTGEGIEH*FSIS 2310
Y +KK S++F FK K VE K+K R+DN GEYTS EF ++ EGI+ F+++
Sbjct: 507 YPIKKKSDVFATFKAFKARVELDSGKKIKCFRTDNGGEYTSEEFDDFCKKEGIKRQFTVA 566
Query: 2311 RQP*QNGITEHMNWTLTEHAHNMRLQTDMLGGFRTEAASHVRYLVNRSPSTVVDL*IPEE 2490
P QNG+ E MN TL E M + F EA + YLVNR+PST ++L P E
Sbjct: 567 YTPQQNGVAERMNRTLLERTRAMLRAAGLEKSFWAEAVNTACYLVNRAPSTAIELKTPME 626
Query: 2491 M 2493
M
Sbjct: 627 M 627
Score = 90.1 bits (222), Expect(3) = 4e-70
Identities = 86/347 (24%), Positives = 157/347 (45%), Gaps = 19/347 (5%)
Frame = +2
Query: 779 EDEKWNDIDFRAKATIILCLPDEVLYNVMNPTIG--LWCKLESPYMTKSLSNKLLMKKQL 952
+D+KW++++ A A + L + D VL ++ +W L Y KSL NK+ +K++L
Sbjct: 44 DDKKWSEMNEDAMADLYLSIADGVLSSIEEKKTANEIWDHLNRLYEAKSLHNKIFLKRKL 103
Query: 953 YSLRM----KVQYYISTLFTRS*SIYWLXXXXXXXXXXQVLC*TLPSSYDCLATTIMYG- 1117
Y+LRM V +++TL T + L ++L +LP SYD L +
Sbjct: 104 YTLRMSESTSVTEHLNTLNTLFSQLTSLSCKIEPQERAELLLQSLPDSYDQLIINLTNNI 163
Query: 1118 -KETIELDDV-R*MLQNQELRKNKESTKV------ALGLFAKNXXXXXXXXXXXXXXXXX 1273
+ + DDV +L+ + RKNKE +V AL +
Sbjct: 164 LTDYLVFDDVAAAVLEEESRRKNKEDRQVNLQQAEALTVMRGRSTERGQSSGRGRSKSSK 223
Query: 1274 XXNVCFYSKKPGHIKKNCYKYKEMQKKDDKESDGASGXXXXXXXXXXXXXXXCDVLTTES 1453
C+ K GH+KK+C+ + + + + + AS C+
Sbjct: 224 KNLTCYNCGKKGHLKKDCW---NLAQNSNPQGNVAS-------TSDDGSALCCEASIARE 273
Query: 1454 GKERYSDTWLLNS-SVHTTCAQKGNDSVHTSLLTDSI**GKDNIWRIMGVGNIQI-MLDR 1627
G++R++D WL++S + + ++K + + S+ D+ I+G+G I++ M D
Sbjct: 274 GRKRFADIWLIDSGATYHMTSRKEWFHHYEPISGGSVYSCDDHALEIIGIGTIKLKMYDG 333
Query: 1628 QVQTLSNV-HV-DIKKNLLSLEVLEAQ*CKLSNGDGSITVTKDSTTI 1762
VQT+ +V HV +KKNLLS +L+ ++ G + + + + +
Sbjct: 334 TVQTVQDVRHVKGLKKNLLSYGILDNSATQIETQKGVMKIFQGALVV 380
Score = 50.8 bits (120), Expect(3) = 4e-70
Identities = 20/46 (43%), Positives = 32/46 (69%)
Frame = +2
Query: 2498 GESVDYSTLRIFDCLAYSFVDSQQMNKLESKSKRCTFIGFTKSVKG 2635
G+ VDYS L IF + Y+ ++Q++ KL+ KS++C F+G+ VKG
Sbjct: 630 GKPVDYSNLHIFGSIVYAMYNAQEITKLDPKSRKCRFLGYADGVKG 675
>gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1305
Score = 177 bits (450), Expect(3) = 1e-69
Identities = 97/242 (40%), Positives = 144/242 (59%), Gaps = 4/242 (1%)
Frame = +1
Query: 1780 ANLYKMIGSVIV-GDAST---TMEDTTRL*HMHLEHMSKRCLQALCDKGVLPGIKHFKLG 1947
+NLY ++G + DAS + E+ T + H L HMS+R L+ L ++ +L G+K L
Sbjct: 396 SNLYLLLGETLQEADASVAAISQEEATMMWHRRLGHMSERGLKILAERNLLSGLKMVTLP 455
Query: 1948 QCKFCIMGRRHRVAFSTS*HKTKGLLDLIHTDVWGTSPIVFIGGTRYYVIFIYNFSRKIW 2127
C+ C+ ++HR+ F+ ++K +LDLIH+DVW SP + +GG +Y+V FI ++SR++W
Sbjct: 456 FCEHCVTSKQHRLQFAKVTTRSKHILDLIHSDVW-ESPEISMGGAKYFVSFIDDYSRRLW 514
Query: 2128 VYLLKKNSEIFHNFKE*KIMVEK*K**KVKFLRSDNDGEYTSAEFKEYLTGEGIEH*FSI 2307
VY +KK S++F FKE K VE ++K LR+DN GEY +F + EGI+ F++
Sbjct: 515 VYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTV 574
Query: 2308 SRQP*QNGITEHMNWTLTEHAHNMRLQTDMLGGFRTEAASHVRYLVNRSPSTVVDL*IPE 2487
+ P QNG+ E MN TL E M + F EA YL+NRSPST + L P
Sbjct: 575 AHTPQQNGVAERMNRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPM 634
Query: 2488 EM 2493
EM
Sbjct: 635 EM 636
Score = 90.5 bits (223), Expect(3) = 1e-69
Identities = 94/359 (26%), Positives = 156/359 (43%), Gaps = 24/359 (6%)
Frame = +2
Query: 758 ENKPSKLEDEKWNDIDFRAKATIILCLPDEVLYNVMNPTIG--LWCKLESPYMTKSLSNK 931
E +PS + DEKW ++D A A + L + D VL ++ T +W L Y KSL +
Sbjct: 36 EGRPSDITDEKWREMDDNAVANLHLAMADSVLSSIAEKTTAKEIWDTLVKLYEVKSLHTR 95
Query: 932 LLMKKQLYSLRMK----VQYYISTLFTRS*SIYWLXXXXXXXXXXQVLC*TLPSSYDCLA 1099
+ +K++LY+LRM V +I+ L T + ++L +LP SYD L
Sbjct: 96 IFLKRKLYTLRMSESTAVTDHINNLNTLFAQLSTADFNIVENERAELLLQSLPDSYDQLI 155
Query: 1100 TTI----MYGKETIELDDVR*MLQNQELRKNK----ESTKVALGLFAKNXXXXXXXXXXX 1255
I + G+ + E D +L+ + RKNK ES+K A L
Sbjct: 156 INITNNNVVGRLSFE-DVAGAILEEESRRKNKEDRLESSKQAEALTMMRGRSMERGSSGS 214
Query: 1256 XXXXXXXXN-----VCFYSKKPGHIKKNCYKYKEMQKKDDKESDGASGXXXXXXXXXXXX 1420
C+ GH+KK+C+ K K S+ ++
Sbjct: 215 QNHGRSKSRGRKNLKCYNCGMRGHMKKDCWHKK---SGGGKNSEASTSQGCVASTQEDGE 271
Query: 1421 XXXCDVLTTESGKERYSDTWLLNSSV--HTTCAQKGNDSVHTSLLTDSI**GKDNIWRIM 1594
+ +++ G+++ + W+L+S H T + + S+ S+ G D+ I
Sbjct: 272 ILYSEAISSR-GEKQLHECWILDSGATWHMT-PNRDWFCTYESISGGSVFMGNDHALEIA 329
Query: 1595 GVGNIQI-MLDRQVQTLSNV-HV-DIKKNLLSLEVLEAQ*CKLSNGDGSITVTKDSTTI 1762
GVG I++ M D ++T+ V HV +KKNLLS+ L+ CK+ G + V K + +
Sbjct: 330 GVGTIKLKMYDGTIRTIQGVRHVKGLKKNLLSIGQLDDLKCKIHVEGGILKVVKGNLVV 388
Score = 48.1 bits (113), Expect(3) = 1e-69
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = +2
Query: 2498 GESVDYSTLRIFDCLAYSFVDSQQMNKLESKSKRCTFIGFTKSVKG 2635
G+ +YS+L +F C Y +SQ+ KL+ KS++C F+G+ +VKG
Sbjct: 639 GKPSNYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKG 684
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 2340
Score = 174 bits (441), Expect(3) = 1e-67
Identities = 98/243 (40%), Positives = 136/243 (55%), Gaps = 5/243 (2%)
Frame = +1
Query: 1780 ANLYKMIGSVIVGDASTTME-----DTTRL*HMHLEHMSKRCLQALCDKGVLPGIKHFKL 1944
ANLY + G+ I+G+ + + D T L HM L HM++ L L +G+L G KL
Sbjct: 613 ANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKL 672
Query: 1945 GQCKFCIMGRRHRVAFSTS*HKTKGLLDLIHTDVWGTSPIVFIGGTRYYVIFIYNFSRKI 2124
C+ CI G+ RV F+TS H T+G+LD +H+D+WG + GGTRY + + ++SRK+
Sbjct: 673 KFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKV 732
Query: 2125 WVYLLKKNSEIFHNFKE*KIMVEK*K**KVKFLRSDNDGEYTSAEFKEYLTGEGIEH*FS 2304
W Y LK + F FKE K MVE+ KVK LR+DN E+ S FK Y EGI ++
Sbjct: 733 WPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYT 792
Query: 2305 ISRQP*QNGITEHMNWTLTEHAHNMRLQTDMLGGFRTEAASHVRYLVNRSPSTVVDL*IP 2484
+ P QNG+ E MN T+ A + + F EA S YL+NRSPS +D P
Sbjct: 793 VPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTP 852
Query: 2485 EEM 2493
E+
Sbjct: 853 IEV 855
Score = 90.9 bits (224), Expect(3) = 1e-67
Identities = 86/344 (25%), Positives = 150/344 (43%), Gaps = 24/344 (6%)
Frame = +2
Query: 803 DFRAKATIILCLPDEVLYNVMNPTI--GLWCKLESPYMTKSLSNKLLMKKQLYSLRMK-- 970
D +A + I L L + +L V+ I GLW KLE MTK L++K+ +K+ L+ +++
Sbjct: 262 DRKAMSYIHLHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDD 321
Query: 971 --VQYYISTLFTRS*SIYWLXXXXXXXXXXQVLC*TLPSSYDCLATTIMYGKETIELDDV 1144
V ++S + + +L +LPSSY TI+Y ++T+ L +V
Sbjct: 322 GSVMDHLSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEV 381
Query: 1145 R*MLQNQELRK----NKESTKVALGLFA----------KNXXXXXXXXXXXXXXXXXXXN 1282
L +E K ++ S A GL
Sbjct: 382 YDALHVKEKMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYK 441
Query: 1283 VCFYSKKPGHIKKNCYKYKEMQKKDDKESDGASGXXXXXXXXXXXXXXXCDVLTTESGKE 1462
C Y K+ GH C+K + K+ K ++L +G
Sbjct: 442 SCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCA 501
Query: 1463 RYSDTWLLNSS-VHTTCAQKGNDSVHTSLLTDSI**GKDNIWRIMGVGNIQI-MLDRQVQ 1636
+ SD W+LN++ ++ C + + + ++ ++ G D + G+G +QI M D ++
Sbjct: 502 QTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIR 561
Query: 1637 TLSNV-HV-DIKKNLLSLEVLEAQ*CKLSNGDGSITVTKDSTTI 1762
TLS+V H+ ++K++L+SL L+ + K S GDG + VTK S +
Sbjct: 562 TLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVV 605
Score = 44.7 bits (104), Expect(3) = 1e-67
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +2
Query: 2498 GESVDYSTLRIFDCLAYSFVDSQQMNKLESKSKRCTFIGFTKSVKGSDFGIP 2653
G +YS LR+F C AY+ VD+ KLE ++ +C F+G+ VKG P
Sbjct: 858 GSPANYSDLRVFGCTAYAHVDN---GKLEPRAIKCIFLGYPSGVKGYKLWCP 906
>dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]
Length = 1601
Score = 174 bits (441), Expect(3) = 1e-67
Identities = 98/243 (40%), Positives = 136/243 (55%), Gaps = 5/243 (2%)
Frame = +1
Query: 1780 ANLYKMIGSVIVGDASTTME-----DTTRL*HMHLEHMSKRCLQALCDKGVLPGIKHFKL 1944
ANLY + G+ I+G+ + + D T L HM L HM++ L L +G+L G KL
Sbjct: 406 ANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKL 465
Query: 1945 GQCKFCIMGRRHRVAFSTS*HKTKGLLDLIHTDVWGTSPIVFIGGTRYYVIFIYNFSRKI 2124
C+ CI G+ RV F+TS H T+G+LD +H+D+WG + GGTRY + + ++SRK+
Sbjct: 466 KFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKV 525
Query: 2125 WVYLLKKNSEIFHNFKE*KIMVEK*K**KVKFLRSDNDGEYTSAEFKEYLTGEGIEH*FS 2304
W Y LK + F FKE K MVE+ KVK LR+DN E+ S FK Y EGI ++
Sbjct: 526 WPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYT 585
Query: 2305 ISRQP*QNGITEHMNWTLTEHAHNMRLQTDMLGGFRTEAASHVRYLVNRSPSTVVDL*IP 2484
+ P QNG+ E MN T+ A + + F EA S YL+NRSPS +D P
Sbjct: 586 VPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTP 645
Query: 2485 EEM 2493
E+
Sbjct: 646 IEV 648
Score = 90.9 bits (224), Expect(3) = 1e-67
Identities = 86/344 (25%), Positives = 150/344 (43%), Gaps = 24/344 (6%)
Frame = +2
Query: 803 DFRAKATIILCLPDEVLYNVMNPTI--GLWCKLESPYMTKSLSNKLLMKKQLYSLRMK-- 970
D +A + I L L + +L V+ I GLW KLE MTK L++K+ +K+ L+ +++
Sbjct: 55 DRKAMSYIHLHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDD 114
Query: 971 --VQYYISTLFTRS*SIYWLXXXXXXXXXXQVLC*TLPSSYDCLATTIMYGKETIELDDV 1144
V ++S + + +L +LPSSY TI+Y ++T+ L +V
Sbjct: 115 GSVMDHLSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEV 174
Query: 1145 R*MLQNQELRK----NKESTKVALGLFA----------KNXXXXXXXXXXXXXXXXXXXN 1282
L +E K ++ S A GL
Sbjct: 175 YDALHVKEKMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYK 234
Query: 1283 VCFYSKKPGHIKKNCYKYKEMQKKDDKESDGASGXXXXXXXXXXXXXXXCDVLTTESGKE 1462
C Y K+ GH C+K + K+ K ++L +G
Sbjct: 235 SCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCA 294
Query: 1463 RYSDTWLLNSS-VHTTCAQKGNDSVHTSLLTDSI**GKDNIWRIMGVGNIQI-MLDRQVQ 1636
+ SD W+LN++ ++ C + + + ++ ++ G D + G+G +QI M D ++
Sbjct: 295 QTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIR 354
Query: 1637 TLSNV-HV-DIKKNLLSLEVLEAQ*CKLSNGDGSITVTKDSTTI 1762
TLS+V H+ ++K++L+SL L+ + K S GDG + VTK S +
Sbjct: 355 TLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVV 398
Score = 44.7 bits (104), Expect(3) = 1e-67
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +2
Query: 2498 GESVDYSTLRIFDCLAYSFVDSQQMNKLESKSKRCTFIGFTKSVKGSDFGIP 2653
G +YS LR+F C AY+ VD+ KLE ++ +C F+G+ VKG P
Sbjct: 651 GSPANYSDLRVFGCTAYAHVDN---GKLEPRAIKCIFLGYPSGVKGYKLWCP 699
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 174 bits (442), Expect(3) = 1e-67
Identities = 99/243 (40%), Positives = 134/243 (55%), Gaps = 5/243 (2%)
Frame = +1
Query: 1780 ANLYKMIGSVIVGDASTTME-----DTTRL*HMHLEHMSKRCLQALCDKGVLPGIKHFKL 1944
ANLY + G+ I+G+ + + D T L HM L HMS+ L L + +L G KL
Sbjct: 441 ANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKL 500
Query: 1945 GQCKFCIMGRRHRVAFSTS*HKTKGLLDLIHTDVWGTSPIVFIGGTRYYVIFIYNFSRKI 2124
C+ CI G+ RV F+TS H T+G+LD +H+D+WG + GG RY + + ++SRK+
Sbjct: 501 KFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKV 560
Query: 2125 WVYLLKKNSEIFHNFKE*KIMVEK*K**KVKFLRSDNDGEYTSAEFKEYLTGEGIEH*FS 2304
W Y LK + F FKE K MVE+ KVK LR+DN E+ S FK Y EGI H ++
Sbjct: 561 WPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYT 620
Query: 2305 ISRQP*QNGITEHMNWTLTEHAHNMRLQTDMLGGFRTEAASHVRYLVNRSPSTVVDL*IP 2484
+ P QNG+ E MN + A M D+ F EA S YL+NRSPS D P
Sbjct: 621 VPHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTP 680
Query: 2485 EEM 2493
E+
Sbjct: 681 IEV 683
Score = 90.5 bits (223), Expect(3) = 1e-67
Identities = 86/344 (25%), Positives = 151/344 (43%), Gaps = 24/344 (6%)
Frame = +2
Query: 803 DFRAKATIILCLPDEVLYNVMNP--TIGLWCKLESPYMTKSLSNKLLMKKQLYSLRMK-- 970
D +A + I L L + +L V+ GLW KLE MTK L++K+ +K++L+ +++
Sbjct: 90 DRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDD 149
Query: 971 --VQYYISTLFTRS*SIYWLXXXXXXXXXXQVLC*TLPSSYDCLATTIMYGKETIELDDV 1144
V ++ST + + +L +LPSSY TI+Y +T+ L +V
Sbjct: 150 GSVMDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILKEV 209
Query: 1145 R*MLQNQELRK----NKESTKVALGLFAKNXXXXXXXXXXXXXXXXXXXN---------- 1282
L +E K ++ S A GL +
Sbjct: 210 YDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYK 269
Query: 1283 VCFYSKKPGHIKKNCYKYKEMQKKDDKESDGASGXXXXXXXXXXXXXXXCDVLTTESGKE 1462
C Y K+ GH C+K ++ K+ K ++L +G
Sbjct: 270 SCKYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCA 329
Query: 1463 RYSDTWLLNSS-VHTTCAQKGNDSVHTSLLTDSI**GKDNIWRIMGVGNIQI-MLDRQVQ 1636
+ SD W+L+++ + C + + + +L ++ G D + G+G +QI M D ++
Sbjct: 330 QTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIR 389
Query: 1637 TLSNV-HV-DIKKNLLSLEVLEAQ*CKLSNGDGSITVTKDSTTI 1762
TLS+V H+ ++K++L+SL L+ + K S GDG + VTK S +
Sbjct: 390 TLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVV 433
Score = 44.7 bits (104), Expect(3) = 1e-67
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +2
Query: 2498 GESVDYSTLRIFDCLAYSFVDSQQMNKLESKSKRCTFIGFTKSVKGSDFGIP 2653
G +YS LR+F C AY+ VD+ KLE ++ +C F+G+ VKG P
Sbjct: 686 GSPANYSDLRVFGCTAYAHVDN---GKLEPRAIKCIFLGYPSGVKGYKLWCP 734
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 174 bits (442), Expect(3) = 1e-67
Identities = 99/243 (40%), Positives = 134/243 (55%), Gaps = 5/243 (2%)
Frame = +1
Query: 1780 ANLYKMIGSVIVGDASTTME-----DTTRL*HMHLEHMSKRCLQALCDKGVLPGIKHFKL 1944
ANLY + G+ I+G+ + + D T L HM L HMS+ L L + +L G KL
Sbjct: 441 ANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKL 500
Query: 1945 GQCKFCIMGRRHRVAFSTS*HKTKGLLDLIHTDVWGTSPIVFIGGTRYYVIFIYNFSRKI 2124
C+ CI G+ RV F+TS H T+G+LD +H+D+WG + GG RY + + ++SRK+
Sbjct: 501 KFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKV 560
Query: 2125 WVYLLKKNSEIFHNFKE*KIMVEK*K**KVKFLRSDNDGEYTSAEFKEYLTGEGIEH*FS 2304
W Y LK + F FKE K MVE+ KVK LR+DN E+ S FK Y EGI H ++
Sbjct: 561 WPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYT 620
Query: 2305 ISRQP*QNGITEHMNWTLTEHAHNMRLQTDMLGGFRTEAASHVRYLVNRSPSTVVDL*IP 2484
+ P QNG+ E MN + A M D+ F EA S YL+NRSPS D P
Sbjct: 621 VPHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTP 680
Query: 2485 EEM 2493
E+
Sbjct: 681 IEV 683
Score = 90.5 bits (223), Expect(3) = 1e-67
Identities = 86/344 (25%), Positives = 151/344 (43%), Gaps = 24/344 (6%)
Frame = +2
Query: 803 DFRAKATIILCLPDEVLYNVMNP--TIGLWCKLESPYMTKSLSNKLLMKKQLYSLRMK-- 970
D +A + I L L + +L V+ GLW KLE MTK L++K+ +K++L+ +++
Sbjct: 90 DRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDD 149
Query: 971 --VQYYISTLFTRS*SIYWLXXXXXXXXXXQVLC*TLPSSYDCLATTIMYGKETIELDDV 1144
V ++ST + + +L +LPSSY TI+Y +T+ L +V
Sbjct: 150 GSVMDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILKEV 209
Query: 1145 R*MLQNQELRK----NKESTKVALGLFAKNXXXXXXXXXXXXXXXXXXXN---------- 1282
L +E K ++ S A GL +
Sbjct: 210 YDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYK 269
Query: 1283 VCFYSKKPGHIKKNCYKYKEMQKKDDKESDGASGXXXXXXXXXXXXXXXCDVLTTESGKE 1462
C Y K+ GH C+K ++ K+ K ++L +G
Sbjct: 270 SCKYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCA 329
Query: 1463 RYSDTWLLNSS-VHTTCAQKGNDSVHTSLLTDSI**GKDNIWRIMGVGNIQI-MLDRQVQ 1636
+ SD W+L+++ + C + + + +L ++ G D + G+G +QI M D ++
Sbjct: 330 QTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIR 389
Query: 1637 TLSNV-HV-DIKKNLLSLEVLEAQ*CKLSNGDGSITVTKDSTTI 1762
TLS+V H+ ++K++L+SL L+ + K S GDG + VTK S +
Sbjct: 390 TLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVV 433
Score = 44.7 bits (104), Expect(3) = 1e-67
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +2
Query: 2498 GESVDYSTLRIFDCLAYSFVDSQQMNKLESKSKRCTFIGFTKSVKGSDFGIP 2653
G +YS LR+F C AY+ VD+ KLE ++ +C F+G+ VKG P
Sbjct: 686 GSPANYSDLRVFGCTAYAHVDN---GKLEPRAIKCIFLGYPSGVKGYKLWCP 734
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 171 bits (434), Expect(3) = 5e-66
Identities = 96/232 (41%), Positives = 131/232 (56%), Gaps = 5/232 (2%)
Frame = +1
Query: 1780 ANLYKMIGSVIVGDASTTME-----DTTRL*HMHLEHMSKRCLQALCDKGVLPGIKHFKL 1944
ANLY + G+ I+G+ +T + D T L HM L HMS+ L L +G+L G KL
Sbjct: 406 ANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKL 465
Query: 1945 GQCKFCIMGRRHRVAFSTS*HKTKGLLDLIHTDVWGTSPIVFIGGTRYYVIFIYNFSRKI 2124
C+ CI G+ RV F+TS H T+G+LD +H+D+WG + GG RY + + ++SRK+
Sbjct: 466 KFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKV 525
Query: 2125 WVYLLKKNSEIFHNFKE*KIMVEK*K**KVKFLRSDNDGEYTSAEFKEYLTGEGIEH*FS 2304
W Y LK + F+ FKE K MVE+ KVK LR+DN E+ S FK Y EGI ++
Sbjct: 526 WPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYT 585
Query: 2305 ISRQP*QNGITEHMNWTLTEHAHNMRLQTDMLGGFRTEAASHVRYLVNRSPS 2460
+ P QNG+ E MN + A M + F EA S YL+NRSPS
Sbjct: 586 VPHTPQQNGVAERMNRIIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPS 637
Score = 87.8 bits (216), Expect(3) = 5e-66
Identities = 84/344 (24%), Positives = 150/344 (43%), Gaps = 24/344 (6%)
Frame = +2
Query: 803 DFRAKATIILCLPDEVLYNVMNP--TIGLWCKLESPYMTKSLSNKLLMKKQLYSLRMK-- 970
D +A + I L L + +L V+ GLW KLE MTK L++K+ +K++L+ +++
Sbjct: 55 DRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDD 114
Query: 971 --VQYYISTLFTRS*SIYWLXXXXXXXXXXQVLC*TLPSSYDCLATTIMYGKETIELDDV 1144
V ++S + + +L +LPSSY TI+Y ++T+ L +V
Sbjct: 115 GSVMDHLSAFKEIVADLESMEVKYDEKDLALILLCSLPSSYANFRDTILYSRDTLTLKEV 174
Query: 1145 R*MLQNQELRK----NKESTKVALGLFAKNXXXXXXXXXXXXXXXXXXXN---------- 1282
L +E K ++ S A GL +
Sbjct: 175 YDALHAKEKMKKMVPSEGSNSQAEGLVVRGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYK 234
Query: 1283 VCFYSKKPGHIKKNCYKYKEMQKKDDKESDGASGXXXXXXXXXXXXXXXCDVLTTESGKE 1462
C Y K+ GH C+K ++ K+ K ++L +G
Sbjct: 235 SCKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCA 294
Query: 1463 RYSDTWLLNSS-VHTTCAQKGNDSVHTSLLTDSI**GKDNIWRIMGVGNIQI-MLDRQVQ 1636
+ SD W+L+++ + C + + + + ++ G D + G+G +QI M D ++
Sbjct: 295 QTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIR 354
Query: 1637 TLSNV-HV-DIKKNLLSLEVLEAQ*CKLSNGDGSITVTKDSTTI 1762
TLS+V H+ ++K++L+SL L+ + K S GDG + VTK S +
Sbjct: 355 TLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVV 398
Score = 45.1 bits (105), Expect(3) = 5e-66
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +2
Query: 2498 GESVDYSTLRIFDCLAYSFVDSQQMNKLESKSKRCTFIGFTKSVKGSDFGIP 2653
G +YS L++F C AY+ VD+ KLE ++ +C F+G+ SVKG P
Sbjct: 650 GSPANYSDLKVFGCTAYAHVDN---GKLEPRAIKCIFLGYPSSVKGYKLWCP 698
>gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1256
Score = 177 bits (450), Expect(3) = 3e-64
Identities = 97/242 (40%), Positives = 144/242 (59%), Gaps = 4/242 (1%)
Frame = +1
Query: 1780 ANLYKMIGSVIV-GDAST---TMEDTTRL*HMHLEHMSKRCLQALCDKGVLPGIKHFKLG 1947
+NLY ++G + DAS + E+ T + H L HMS+R L+ L ++ +L G+K L
Sbjct: 347 SNLYLLLGETLQEADASVAAISQEEATMMWHRRLGHMSERGLKILAERNLLSGLKMVTLP 406
Query: 1948 QCKFCIMGRRHRVAFSTS*HKTKGLLDLIHTDVWGTSPIVFIGGTRYYVIFIYNFSRKIW 2127
C+ C+ ++HR+ F+ ++K +LDLIH+DVW SP + +GG +Y+V FI ++SR++W
Sbjct: 407 FCEHCVTSKQHRLQFAKVTTRSKHILDLIHSDVW-ESPEISMGGAKYFVSFIDDYSRRLW 465
Query: 2128 VYLLKKNSEIFHNFKE*KIMVEK*K**KVKFLRSDNDGEYTSAEFKEYLTGEGIEH*FSI 2307
VY +KK S++F FKE K VE ++K LR+DN GEY +F + EGI+ F++
Sbjct: 466 VYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTV 525
Query: 2308 SRQP*QNGITEHMNWTLTEHAHNMRLQTDMLGGFRTEAASHVRYLVNRSPSTVVDL*IPE 2487
+ P QNG+ E MN TL E M + F EA YL+NRSPST + L P
Sbjct: 526 AHTPQQNGVAERMNRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPM 585
Query: 2488 EM 2493
EM
Sbjct: 586 EM 587
Score = 72.4 bits (176), Expect(3) = 3e-64
Identities = 87/345 (25%), Positives = 146/345 (42%), Gaps = 24/345 (6%)
Frame = +2
Query: 800 IDFRAKATIILCLPDEVLYNVMNPTIG--LWCKLESPYMTKSLSNKLLMKKQLYSLRMK- 970
+D A A + L + D VL ++ T +W L Y KSL ++ +K++LY+LRM
Sbjct: 1 MDDNAVANLHLAMADSVLSSIAEKTTAKEIWDTLVKLYEVKSLHTRIFLKRKLYTLRMSE 60
Query: 971 ---VQYYISTLFTRS*SIYWLXXXXXXXXXXQVLC*TLPSSYDCLATTI----MYGKETI 1129
V +I+ L T + ++L +LP SYD L I + G+ +
Sbjct: 61 STAVTDHINNLNTLFAQLSTADFNIVENERAELLLQSLPDSYDQLIINITNNNVVGRLSF 120
Query: 1130 ELDDVR*MLQNQELRKNKE----STKVALGLFAKNXXXXXXXXXXXXXXXXXXXN----- 1282
E D +L+ + RKNKE S+K A L
Sbjct: 121 E-DVAGAILEEESRRKNKEDRLESSKQAEALTMMRGRSMERGSSGSQNHGRSKSRGRKNL 179
Query: 1283 VCFYSKKPGHIKKNCYKYKEMQKKDDKESDGASGXXXXXXXXXXXXXXXCDVLTTESGKE 1462
C+ GH+KK+C+ K K S+ ++ + +++ G++
Sbjct: 180 KCYNCGMRGHMKKDCWHKKS---GGGKNSEASTSQGCVASTQEDGEILYSEAISSR-GEK 235
Query: 1463 RYSDTWLLNSSV--HTTCAQKGNDSVHTSLLTDSI**GKDNIWRIMGVGNIQI-MLDRQV 1633
+ + W+L+S H T + + S+ S+ G D+ I GVG I++ M D +
Sbjct: 236 QLHECWILDSGATWHMT-PNRDWFCTYESISGGSVFMGNDHALEIAGVGTIKLKMYDGTI 294
Query: 1634 QTLSNV-HVD-IKKNLLSLEVLEAQ*CKLSNGDGSITVTKDSTTI 1762
+T+ V HV +KKNLLS+ L+ CK+ G + V K + +
Sbjct: 295 RTIQGVRHVKGLKKNLLSIGQLDDLKCKIHVEGGILKVVKGNLVV 339
Score = 48.1 bits (113), Expect(3) = 3e-64
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = +2
Query: 2498 GESVDYSTLRIFDCLAYSFVDSQQMNKLESKSKRCTFIGFTKSVKG 2635
G+ +YS+L +F C Y +SQ+ KL+ KS++C F+G+ +VKG
Sbjct: 590 GKPSNYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKG 635