BLASTX nr result
ID: Ophiopogon22_contig00021393
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon22_contig00021393
(387 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_020251395.1| DNA-directed RNA polymerase 3B, chloroplasti... 141 2e-36
ref|XP_020594687.1| DNA-directed RNA polymerase 3, chloroplastic... 75 2e-13
ref|XP_020597755.1| DNA-directed RNA polymerase 3, chloroplastic... 75 6e-13
gb|PKU65337.1| DNA-directed RNA polymerase 3, chloroplastic [Den... 74 7e-13
ref|XP_020699294.1| DNA-directed RNA polymerase 3B, chloroplasti... 74 7e-13
ref|XP_020699293.1| DNA-directed RNA polymerase 3, chloroplastic... 74 8e-13
>ref|XP_020251395.1| DNA-directed RNA polymerase 3B, chloroplastic-like [Asparagus
officinalis]
Length = 989
Score = 141 bits (356), Expect = 2e-36
Identities = 72/129 (55%), Positives = 84/129 (65%), Gaps = 2/129 (1%)
Frame = +1
Query: 7 LSSLRSSPFPLGSDP--PDSDNKFPVAFSHLAPLQSPLLLDPAANLSPSIQFQWTEPLNF 180
L+SLR SPFPLGSDP P+ DNKFP+ FSHL PLQSP+ LDP A+L S+Q QWT+PLNF
Sbjct: 69 LNSLRHSPFPLGSDPHPPEPDNKFPITFSHLTPLQSPVALDPVAHLKQSLQIQWTQPLNF 128
Query: 181 AFLEDPIQISPIPPPEDDGSARKRYNALRRRQIKXXXXXXXXXXXXXXXXXXXXXXXXXX 360
FLEDP++I P P PE + S RK+ N+LRRRQIK
Sbjct: 129 TFLEDPVRILPNPSPEPEESRRKKQNSLRRRQIKAEAEAWARAAEEYKELVRVMLEKKLA 188
Query: 361 PSLPYVKSL 387
PSLPYVKSL
Sbjct: 189 PSLPYVKSL 197
>ref|XP_020594687.1| DNA-directed RNA polymerase 3, chloroplastic-like, partial
[Phalaenopsis equestris]
Length = 272
Score = 74.7 bits (182), Expect = 2e-13
Identities = 52/147 (35%), Positives = 66/147 (44%), Gaps = 18/147 (12%)
Frame = +1
Query: 1 VTLSSLRSSPFPLGSDPPDSDNKFPVAFSHLAPLQSPLLLDPAANLSPSIQFQWT----- 165
V L+SL SSPFPLGSD + + KFP AFSH+ L+SP++ DP I F W
Sbjct: 53 VALNSLDSSPFPLGSDSLEPELKFPTAFSHMKTLESPVIYDPVVLQDERIDFPWLGYDRS 112
Query: 166 -----EPLNFAFLEDPIQISPIPPPEDD--------GSARKRYNALRRRQIKXXXXXXXX 306
+ L F D + + P DD ARK+Y +LRRRQ+K
Sbjct: 113 LILPGQTLERIFRTDSLWM----PRFDDLASVRESLDVARKKYKSLRRRQVKAETEAWER 168
Query: 307 XXXXXXXXXXXXXXXXXXPSLPYVKSL 387
P+LPYVKSL
Sbjct: 169 AAEEYKELERVMLEKKLAPNLPYVKSL 195
>ref|XP_020597755.1| DNA-directed RNA polymerase 3, chloroplastic-like [Phalaenopsis
equestris]
Length = 985
Score = 74.7 bits (182), Expect = 6e-13
Identities = 52/147 (35%), Positives = 66/147 (44%), Gaps = 18/147 (12%)
Frame = +1
Query: 1 VTLSSLRSSPFPLGSDPPDSDNKFPVAFSHLAPLQSPLLLDPAANLSPSIQFQWT----- 165
V L+SL SSPFPLGSD + + KFP AFSH+ L+SP++ DP I F W
Sbjct: 53 VALNSLDSSPFPLGSDSLEPELKFPTAFSHMKTLESPVIYDPVVLQDERIDFPWLGYDRS 112
Query: 166 -----EPLNFAFLEDPIQISPIPPPEDD--------GSARKRYNALRRRQIKXXXXXXXX 306
+ L F D + + P DD ARK+Y +LRRRQ+K
Sbjct: 113 LILPGQTLERIFRTDSLWM----PRFDDLASVRESLDVARKKYKSLRRRQVKAETEAWER 168
Query: 307 XXXXXXXXXXXXXXXXXXPSLPYVKSL 387
P+LPYVKSL
Sbjct: 169 AAEEYKELERVMLEKKLAPNLPYVKSL 195
>gb|PKU65337.1| DNA-directed RNA polymerase 3, chloroplastic [Dendrobium catenatum]
Length = 794
Score = 74.3 bits (181), Expect = 7e-13
Identities = 54/147 (36%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Frame = +1
Query: 1 VTLSSLRSSPFPLGSDPPDSDNKFPVAFSHLAPLQSPLLLDPAANLSPSIQFQW------ 162
V +SL SSPFPLGSD + + KF AFSH+ L+SP++ D F W
Sbjct: 53 VAQNSLHSSPFPLGSDSLEPEVKFRTAFSHMRTLESPVIYDTITVQDEQADFPWFGYDHS 112
Query: 163 ----TEPLNFAFLEDPIQISPIPPPEDD--------GSARKRYNALRRRQIKXXXXXXXX 306
+ L F ED +P P DD G ARK+YNALRRRQ+K
Sbjct: 113 LILPGKTLERIFWED----TPWMPCFDDLLNVHESLGLARKKYNALRRRQVKAETEAWER 168
Query: 307 XXXXXXXXXXXXXXXXXXPSLPYVKSL 387
PSLPYVKSL
Sbjct: 169 AAEEYKELERVMLEKKLAPSLPYVKSL 195
>ref|XP_020699294.1| DNA-directed RNA polymerase 3B, chloroplastic-like isoform X2
[Dendrobium catenatum]
Length = 794
Score = 74.3 bits (181), Expect = 7e-13
Identities = 54/147 (36%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Frame = +1
Query: 1 VTLSSLRSSPFPLGSDPPDSDNKFPVAFSHLAPLQSPLLLDPAANLSPSIQFQW------ 162
V +SL SSPFPLGSD + + KF AFSH+ L+SP++ D F W
Sbjct: 53 VAQNSLHSSPFPLGSDSLEPEVKFRTAFSHMRTLESPVIYDTITVQDEQADFPWFGYDHS 112
Query: 163 ----TEPLNFAFLEDPIQISPIPPPEDD--------GSARKRYNALRRRQIKXXXXXXXX 306
+ L F ED +P P DD G ARK+YNALRRRQ+K
Sbjct: 113 LILPGKTLERIFWED----TPWMPCFDDLLNVHESLGLARKKYNALRRRQVKAETEAWER 168
Query: 307 XXXXXXXXXXXXXXXXXXPSLPYVKSL 387
PSLPYVKSL
Sbjct: 169 AAEEYKELERVMLEKKLAPSLPYVKSL 195
>ref|XP_020699293.1| DNA-directed RNA polymerase 3, chloroplastic-like isoform X1
[Dendrobium catenatum]
Length = 985
Score = 74.3 bits (181), Expect = 8e-13
Identities = 54/147 (36%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Frame = +1
Query: 1 VTLSSLRSSPFPLGSDPPDSDNKFPVAFSHLAPLQSPLLLDPAANLSPSIQFQW------ 162
V +SL SSPFPLGSD + + KF AFSH+ L+SP++ D F W
Sbjct: 53 VAQNSLHSSPFPLGSDSLEPEVKFRTAFSHMRTLESPVIYDTITVQDEQADFPWFGYDHS 112
Query: 163 ----TEPLNFAFLEDPIQISPIPPPEDD--------GSARKRYNALRRRQIKXXXXXXXX 306
+ L F ED +P P DD G ARK+YNALRRRQ+K
Sbjct: 113 LILPGKTLERIFWED----TPWMPCFDDLLNVHESLGLARKKYNALRRRQVKAETEAWER 168
Query: 307 XXXXXXXXXXXXXXXXXXPSLPYVKSL 387
PSLPYVKSL
Sbjct: 169 AAEEYKELERVMLEKKLAPSLPYVKSL 195