BLASTX nr result
ID: Ophiopogon22_contig00018992
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon22_contig00018992
(2515 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CDP17738.1| unnamed protein product [Coffea canephora] 96 1e-61
gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo... 102 9e-61
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v... 103 2e-55
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 79 1e-45
gb|ONK68196.1| uncharacterized protein A4U43_C05F8640 [Asparagus... 114 1e-44
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711... 80 2e-44
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 74 7e-40
gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense] 72 8e-40
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 75 9e-40
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 76 1e-36
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 76 1e-36
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group] 79 1e-36
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 74 5e-36
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa] 77 7e-36
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 66 3e-35
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 72 3e-34
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa] 74 2e-32
emb|CDP17739.1| unnamed protein product [Coffea canephora] 77 7e-32
gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposo... 72 1e-29
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc... 72 1e-29
>emb|CDP17738.1| unnamed protein product [Coffea canephora]
Length = 798
Score = 95.5 bits (236), Expect(5) = 1e-61
Identities = 65/220 (29%), Positives = 111/220 (50%)
Frame = +3
Query: 183 FSVEGGTSIANHMNVYIKLLAVLANVDEVIADEVKALILLSSLPDEYETFVMTLINDKSS 362
F + GT++ H+ ++ +L+A L N+D DE AL+LLSSLPDE+E TL++ K +
Sbjct: 137 FDYQPGTTMNEHITIFNQLVADLLNLDVNFEDEDLALMLLSSLPDEFEHLETTLLHGKEN 196
Query: 363 LSYNDVFAALVNYELRRKDWKSSSGKLAETLSV*VPARRTTATGKVNV*IR*ISCGKILV 542
+S + V +AL + ELR++D K A+ V +++ + G+ K
Sbjct: 197 VSLDAVCSALYSRELRKQDKKKKKVAAADEALVARGRQQSQSKGRRGWSKSISRVAKDEC 256
Query: 543 CVLQAERALEEGLPRVQEEIEAK**ACIRDQHR*IGWXXXXXXXXXXXXPNICYSDVSEW 722
+ + ++ P+++++ +A Q + + S EW
Sbjct: 257 AFCREKGHWKKDCPKLKKKGKA-------PQDVNVAECKSDAESDFSLAVSRLTSHPDEW 309
Query: 723 MLHSSVTYHIYPKREWFSSFEKLDNGVVFMGDCHACRIVG 842
+L S+ TYH+ P REWF FE+LD G V+MG+ + C+ VG
Sbjct: 310 ILDSTCTYHMTPMREWFFEFEELDGGFVYMGNDNPCKTVG 349
Score = 82.8 bits (203), Expect(5) = 1e-61
Identities = 58/161 (36%), Positives = 82/161 (50%), Gaps = 8/161 (4%)
Frame = +1
Query: 841 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXXFEW*N-LYSCH 1017
GI +I +R +DG R L +VRY LK++LI LG + +
Sbjct: 349 GIGSIKLRNHDGSTRILKDVRYVPNLKRSLISLGLLESKGLEVRMRDGILKVTSGALLML 408
Query: 1018 ERRQRTKLVLSQRNTMTNHVMASV------DSDTIKLGHRSLRHTDEKSLQVLAKQGLLN 1179
+ ++ L Q +T+ + D++ KL H L EKSLQ LAKQGLL
Sbjct: 409 KGVRKNNLYYYQGSTVVGTAAVATSSSSKKDAEATKLWHMRLGDAGEKSLQNLAKQGLLK 468
Query: 1180 DAKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1299
K CK+ F E+C+L K+++VKF T IH T+ LD+VH DV
Sbjct: 469 GTKVCKLEFCEHCVLEKQRKVKFGTGIHNTKGILDYVHSDV 509
Score = 78.6 bits (192), Expect(5) = 1e-61
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 7/161 (4%)
Frame = +2
Query: 1301 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRS--RYFHQMKKCIELQTGRKIKVSSV 1474
G AK SL G+Y FV ++DD++R + ++ K + F + K +E QTGRKIK+
Sbjct: 511 GPAKTPSLGGRYYFVTFIDDFSRRVWVFTMKSKDEMLKIFLKWKARVENQTGRKIKILRT 570
Query: 1475 IM---VESTRVALFYSYVGI*SIKIL--YCQGNTATKWDCRKSELYIAGEGMMLSNLGLK 1639
+S GI I+ Q N ++ ++ + MLSN GL
Sbjct: 571 DNGGEYKSDPFQKICQECGIVRHFIVRKIPQQNGVSE---HMNKTLVEKVRCMLSNAGLG 627
Query: 1640 NNF*VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYD 1762
F E +TYA HL NRL SSAI KT +EVWSG+ A DYD
Sbjct: 628 RKFWAEAVTYAQHLVNRLPSSAIGGKTPLEVWSGKLATDYD 668
Score = 40.4 bits (93), Expect(5) = 1e-61
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 22/127 (17%)
Frame = +1
Query: 1768 IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQ--IS*QVETDVSPQ--- 1932
IF +AYY V KLDPRA+K +F+ F GV ++ ++ IS V D S
Sbjct: 672 IFDSTAYYHVNESKLDPRAKKALFMGFSAGVKGYRLWYLEAKKTIISRDVTFDESVMLNK 731
Query: 1933 -----TSVTTVSFD-TPLEVTQQATQVTDMTDTLGG-----EDSEYQE------GQVQDS 2061
TS T + TP +V + V+ T+ E+S+ +E Q Q S
Sbjct: 732 ITQDGTSGTPQQVECTPKQVEFEQIVVSPANSTISDSPMAEEESDEEEVSTQEPQQQQKS 791
Query: 2062 IAVRKSK 2082
IAV +++
Sbjct: 792 IAVNRAR 798
Score = 33.5 bits (75), Expect(5) = 1e-61
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Frame = +1
Query: 1 RREDLEQNEYDVQSD------KVCLTQDLKYHVMYEISARKILEILKSYYLTKSIGNRLH 162
+ +D+E+ E+ + + CL+++ KY E SA K+ + L+ +L KS N+L
Sbjct: 70 KSDDIEEKEWSTINRLACGTIRSCLSKEQKYAFKNETSAWKLWKALEGKFLKKSGQNKLL 129
Query: 163 LNGRFYRFQLKGG 201
+ +RF + G
Sbjct: 130 MKKILFRFDYQPG 142
>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1032
Score = 102 bits (253), Expect(5) = 9e-61
Identities = 74/205 (36%), Positives = 101/205 (49%), Gaps = 20/205 (9%)
Frame = +1
Query: 1768 IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQ--IS*QVETDVSPQTSV 1941
+FGC+AYY VK KLDPRA+K IF+ GV ++ T++ IS V D S
Sbjct: 435 VFGCTAYYHVKESKLDPRAKKAIFMGIASGVKGYRLWCLETKKTIISRDVTFDESTMLGK 494
Query: 1942 TT-----------VSFDTPLEVTQQATQVTDMTDTLGGEDSEYQEGQVQ------DSIAV 2070
T V F+ + + T M D E+S+ +E +Q +SIA+
Sbjct: 495 VTTEQKKNGTPKQVEFERKIVFPANDEEKTPMVD----EESDEEEVHIQEPPQQLESIAL 550
Query: 2071 RKSKRNTKMSGWLSKDMMVAYTLSVV*KSVPSTLRKVEVSVKSDKWKYVVMEEMDSLLKN 2250
RK KR T M MV+Y V +P+T + + DKW+ + EEM+SL +N
Sbjct: 551 RKPKRTTIMPARYVD--MVSYASPVASDDIPTTYIEAVKGSEEDKWRSAMSEEMESLRRN 608
Query: 2251 -TWILPKLSKGNKVIGCK*VFAMKD 2322
TW L L KG K IGCK V+A KD
Sbjct: 609 QTWKLANLPKGKKAIGCKWVYAKKD 633
Score = 82.0 bits (201), Expect(5) = 9e-61
Identities = 59/160 (36%), Positives = 84/160 (52%), Gaps = 7/160 (4%)
Frame = +1
Query: 841 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXXFEW*N--LYSC 1014
GI +I ++ DG R L +VR+ +L +NLI +GA + + L
Sbjct: 113 GIGSIRLKNRDGAIRTLKDVRFVPSLSRNLISVGALEEKGFTVHAEGGVMKIISGALVVM 172
Query: 1015 HERRQRTKLVLSQRNTMTNHV-MASVDS---DTIKLGHRSLRHTDEKSLQVLAKQGLLND 1182
R+ +L Q T+ +AS D ++ KL H L H E+SL +L KQGLL +
Sbjct: 173 KGVRKNNRLYYYQGTTIIGTAAVASSDEKELESAKLWHMRLGHAGERSLNLLMKQGLLKN 232
Query: 1183 AKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1299
+ CK+ F E+C+ KK RVKF TAIH T+ LD+VH DV
Sbjct: 233 IQACKLDFCEHCVKGKKTRVKFGTAIHDTKGILDYVHSDV 272
Score = 70.5 bits (171), Expect(5) = 9e-61
Identities = 56/166 (33%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Frame = +2
Query: 1301 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRS--RYFHQMKKCIELQTGRKIK---- 1462
G +K SL G + +V +VDD++R + +Y K F + KK +E QTGRKIK
Sbjct: 274 GPSKTASLAGNHYYVTFVDDFSRRIWVYAMKTKDEVLGIFLKWKKRMETQTGRKIKHFRT 333
Query: 1463 ------VSSVIMVESTRVALFYSYVGI*SIKILYCQGNTATKWDCRKSELYIAGEGMMLS 1624
S + + ++K Q A R + + MLS
Sbjct: 334 DNGGEYTSDPFKKACEESGIVRHF----TVKHTPQQNGVAE----RMNRTLLEKVRCMLS 385
Query: 1625 NLGLKNNF*VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYD 1762
N GL F E + YA+HL NRL SSAI KT +E W G+ A DYD
Sbjct: 386 NAGLGKQFWAEAVVYASHLINRLPSSAIGGKTPLEKWFGKPATDYD 431
Score = 40.0 bits (92), Expect(5) = 9e-61
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 705 SDVSEWMLHSSVTYHIYPKREWFSSFEKLDNGVVF 809
S S W+L S + H+ P REWF F +L+ GVV+
Sbjct: 68 SSSSAWLLDSGCSNHMCPNREWFYDFRELEEGVVY 102
Score = 33.1 bits (74), Expect(5) = 9e-61
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +3
Query: 2334 DVHYKARLTAKGYAQKEDV 2390
+V YKARL AKGYAQKE +
Sbjct: 640 EVRYKARLVAKGYAQKEGI 658
>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 813
Score = 103 bits (258), Expect(3) = 2e-55
Identities = 92/283 (32%), Positives = 123/283 (43%), Gaps = 17/283 (6%)
Frame = +1
Query: 502 MSRSDRLVVEKY*CAFCKQNEHWXXXXXXXXXXXXQNSKHASEINIV--KSDGND*FFYI 675
MS+S VV K CAFC + HW + K + N+ KSD I
Sbjct: 157 MSKSKGRVVAKDECAFCHEKGHWKKDCPKLQ----KKEKVPQDANVAECKSDVESDISLI 212
Query: 676 FFPLVLIFVTQMCL-SGCFIAVLPITSTLRGNGSPASRSWTMEWYSWAIAM-------RA 831
+ + L SGC + PI R W E+ +
Sbjct: 213 VSLSASSYPDEWILDSGCTYHMCPI------------RDWFFEFQELDGGVVYMGNDNPC 260
Query: 832 E*WGICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXXFE-W*NLY 1008
+ GI +I +R +DG R L +VRY LKKNLI LGA +
Sbjct: 261 KTVGIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATLGAL 320
Query: 1009 SCHERRQRTKLVLSQRNTMTNHVMASV-----DSDTIKLGHRSLRHTDEKSLQVLAKQGL 1173
+ + L Q +T+ V A+ D++ KL H L H EKSLQ+L KQGL
Sbjct: 321 VMLKGVMKNNLYYYQGSTVVGTVAAATSSSKKDAEAAKLWHMRLGHAGEKSLQILTKQGL 380
Query: 1174 LNDAKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1299
L K CK+ F E+C+L K++RVKF TAIH T+ LD+VH DV
Sbjct: 381 LKGTKACKLEFCEHCVLGKQRRVKFGTAIHNTKGILDYVHSDV 423
Score = 88.6 bits (218), Expect(3) = 2e-55
Identities = 74/210 (35%), Positives = 103/210 (49%), Gaps = 25/210 (11%)
Frame = +1
Query: 1768 IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQV-----------------ENTTTRQ 1896
+FG AYY V KLDPRA+K +F+ F GV ++ E+ ++
Sbjct: 586 VFGSIAYYHVIESKLDPRAKKALFMGFSPGVKGYRLWCLEKKKTIISRDVTFDESVMLKK 645
Query: 1897 IS*QVETDVSPQTSVTTVSFDTPLEVTQQ-ATQVTDMTDTLGGEDSEYQEGQVQDS---- 2061
++ + TD +PQ V V E T T+ T + E+S+ +E Q+S
Sbjct: 646 VNPE-GTDSTPQ-QVECVRKQVEFEPTVVIPTRNTTSDSPMAEEESDEEEVPTQESQQQS 703
Query: 2062 --IAVRKSKRNTKMSGWLSKDMMVAYTLSVV*KSVPSTLRKVEVSVKSDKWKYVVMEEMD 2235
IAVR+ +R+ + MVAY L VV +PST V +S +S W + EEM
Sbjct: 704 APIAVRRQRRDIQKPARFMD--MVAYALPVV-DDIPSTYPGVILSSESGNWAGAMEEEMQ 760
Query: 2236 SLLKN-TWILPKLSKGNKVIGCK*VFAMKD 2322
SL KN TW L +L KG K IGCK VFA K+
Sbjct: 761 SLKKNKTWKLTQLPKGKKAIGCKWVFAKKE 790
Score = 76.6 bits (187), Expect(3) = 2e-55
Identities = 57/158 (36%), Positives = 78/158 (49%), Gaps = 4/158 (2%)
Frame = +2
Query: 1301 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRS--RYFHQMKKCIELQTGRKIKVSSV 1474
G AK S+ G++ FV +VDD++R + ++ K F + K +E TGRKIKV
Sbjct: 425 GPAKTPSIGGRHYFVTFVDDFSRRVWVFTMKNKNDVLEIFLKWKAEVENHTGRKIKVLQT 484
Query: 1475 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDC--RKSELYIAGEGMMLSNLGLKNNF 1648
+ F + I + T + R ++ + MLSN L F
Sbjct: 485 DNGGEYKSDPFLNVCQDCGIVRHFTVRKTPQQNGVSERMNKTLVEKVCCMLSNAELGREF 544
Query: 1649 *VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYD 1762
E +TYA HL NRL SSAID KT +EVWSG+ A DYD
Sbjct: 545 WAEAVTYAQHLVNRLPSSAIDGKTPLEVWSGKPATDYD 582
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 78.6 bits (192), Expect(5) = 1e-45
Identities = 67/212 (31%), Positives = 100/212 (47%), Gaps = 27/212 (12%)
Frame = +1
Query: 1768 IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQIS*QVETDVSPQTSV-- 1941
+FGC+AY V NGKL+PRA K IF+ + GV ++ T+++ + +V SV
Sbjct: 633 VFGCTAYAHVDNGKLEPRAIKCIFLGYASGVKGYKLWCPETKKV--VISRNVVFHESVIL 690
Query: 1942 -TTVSFDTPLEVTQQAT------------------QVTDMTDTLGGEDSEYQEGQVQDSI 2064
S + P+E ++A+ + + DS + SI
Sbjct: 691 HDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVHQSPKRSI 750
Query: 2065 AVRKSKRNTK-MSGWLSKDMMVAYTLSVV*K----SVPSTLRKVEVSVKSDKWKYVVMEE 2229
A K KRN K ++ + +VAY LSV K + PST + VS ++W + +E
Sbjct: 751 AKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHDE 810
Query: 2230 MDSLLKN-TWILPKLSKGNKVIGCK*VFAMKD 2322
M+SL KN TW L KL K K I CK +F K+
Sbjct: 811 MESLEKNHTWELVKLPKEKKPIRCKWIFKRKE 842
Score = 73.2 bits (178), Expect(5) = 1e-45
Identities = 56/159 (35%), Positives = 77/159 (48%), Gaps = 6/159 (3%)
Frame = +1
Query: 841 GICTINIRMYDGMARKLIEVRYALALKKNLI-LLGAFVXXXXXXXXXXXXFEW*NLYSCH 1017
GI T+ I+M+DG R L +V++ LK++LI L G + NLY
Sbjct: 325 GIGTVQIKMFDGCIRTLSDVQHIPNLKRSLISLYGILKVTKGSLVVMKVDIKSANLYHL- 383
Query: 1018 ERRQRTKLVLSQRNTMTNHVMASVDS----DTIKLGHRSLRHTDEKSLQVLAKQGLLNDA 1185
+ T+ +V A DS D L H L H E L L+K+GLL+
Sbjct: 384 -----------RGTTILGNVAAVFDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQ 432
Query: 1186 KTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1299
K+ F E+CI K KRVKF+T+ H TE LD+VH D+
Sbjct: 433 SIRKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 471
Score = 66.2 bits (160), Expect(5) = 1e-45
Identities = 55/163 (33%), Positives = 73/163 (44%), Gaps = 4/163 (2%)
Frame = +2
Query: 1301 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1474
G A TS G + VDDY+R++ Y K + F + K +E QT RK+K+
Sbjct: 473 GPAHKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEWKTMVERQTERKVKILRT 532
Query: 1475 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDC--RKSELYIAGEGMMLSNLGLKNNF 1648
+F SY I Y +T + D R + I+ MLSN GL F
Sbjct: 533 DNGMEFCSKIFKSYCKSEGIVCHYTAPHTPQQNDVAERMNRTIISKARCMLSNAGLPKQF 592
Query: 1649 *VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 1777
E ++ A +L NR AID+KT IEVWSG DL G
Sbjct: 593 WAEAVSTACYLINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFG 635
Score = 32.3 bits (72), Expect(5) = 1e-45
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 762 REWFSSFEKLDNGVVFMGDCHACRIVG 842
++WF+++E L G V MGD C + G
Sbjct: 299 QDWFATYEALQGGTVLMGDDTPCEVAG 325
Score = 25.8 bits (55), Expect(5) = 1e-45
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 2334 DVHYKARLTAKGYAQ 2378
+ YKARL AKGY+Q
Sbjct: 849 EARYKARLVAKGYSQ 863
>gb|ONK68196.1| uncharacterized protein A4U43_C05F8640 [Asparagus officinalis]
Length = 631
Score = 114 bits (284), Expect(2) = 1e-44
Identities = 108/367 (29%), Positives = 156/367 (42%), Gaps = 25/367 (6%)
Frame = +1
Query: 499 SMSRSDRLVVEKY*CAFCKQNEHWXXXXXXXXXXXXQNSK--HASEINIVKSDGND*--F 666
S SRS + + CAFCK+ EHW K A+E+N+ K D +D F
Sbjct: 198 SKSRSHHQLAKNQ-CAFCKEQEHWKRDCPKLKEKENCKKKGPKANEVNVAKGDDSDDSCF 256
Query: 667 FYIFFPLV--LIFVTQMCLSGCFIAVLPITS------------TLRGNGSPASRSWTMEW 804
+ P V + + M SG V P + GN S W
Sbjct: 257 SLLITPEVNHVDVLDWMLDSGATYHVTPRRDWFASFEKVDGGVVVMGNDQFCSVCW---- 312
Query: 805 YSWAIAMRAE*WGICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXX 984
I T+ IRM+DG+ R+L EVR+ LKKN+I +GA
Sbjct: 313 -------------IGTVRIRMHDGVVRELKEVRFVPQLKKNIISVGAL------------ 347
Query: 985 XFEW*NLYSCHERRQRTKLVLSQRNTMTNHVMASVDSDTIKLGHRSLRHTDEKSLQVLAK 1164
+R + +SQ +A ++D KL H L HT E SLQ+L K
Sbjct: 348 ----------EAKRFKGSTEISQV------ALAISEADISKLWHYRLGHTSENSLQILCK 391
Query: 1165 QGLLNDAKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDVGICQEHIA*R*VXX 1341
Q LL AK+ K+ F E+C+L KK +VKF T+IH+T +D++H DV ++++ +
Sbjct: 392 QRLLKGAKSGKIEFCEHCVLGKKTKVKFGTSIHQTRGIMDYMHTDVWGLTKNVS---LGG 448
Query: 1342 XXXXXXXXXXXXXXSWLV------KEI*IFSSNEKVY*IADR*KNQGIKCDNGGEYTSSS 1503
W+ + + IF +K + K + ++ DNGGEYTS
Sbjct: 449 QHWFVTFVDDYSRHCWVYTMTKKSEVLDIFVEWKKRLELQTGRKIKTLRSDNGGEYTSDP 508
Query: 1504 FL*LCRD 1524
F LCRD
Sbjct: 509 FQQLCRD 515
Score = 97.8 bits (242), Expect(2) = 1e-44
Identities = 53/94 (56%), Positives = 70/94 (74%), Gaps = 2/94 (2%)
Frame = +3
Query: 183 FSVEGGTSIANHMNVYIKLLAVLANVDEVIADEVKALILLSSLPD-EYETFVMTLINDKS 359
F + GTS+A H+N Y KLL+ LANVDE I+DE KA+ LL SLPD EY+TFV+ L+N +S
Sbjct: 89 FQMSRGTSLATHVNNYTKLLSNLANVDEKISDEYKAIFLLGSLPDEEYDTFVLILLNGRS 148
Query: 360 SLSYNDVFAALVNYELRRKDWKSSSGKLA-ETLS 458
S+ Y++V AL NY+LRRKD ++S + ETLS
Sbjct: 149 SIIYSEVTNALTNYDLRRKDKETSRASTSGETLS 182
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 80.1 bits (196), Expect(5) = 2e-44
Identities = 68/211 (32%), Positives = 98/211 (46%), Gaps = 27/211 (12%)
Frame = +1
Query: 1771 FGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQI----------S*QVETD 1920
FGC+AYY V GKL+PRA+K +F+ + GV ++ + +++ S + T
Sbjct: 640 FGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESPLLRTI 699
Query: 1921 VSPQTSVTTVSFDTPLEVTQQATQVTDMTDTLGGEDSEYQEGQ------------VQDSI 2064
V P T+ T S D +E QV L + E QE Q + SI
Sbjct: 700 VKPTTTSETGSLDKQVEF-----QVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSI 754
Query: 2065 AVRKSKR-NTKMSGWLSKDMMVAYTLSV---V*KSVPSTLRKVEVSVKSDKWKYVVMEEM 2232
A + +R + + MV Y L V V S PST ++ +S S+KW + +EM
Sbjct: 755 AQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEM 814
Query: 2233 DSLLKN-TWILPKLSKGNKVIGCK*VFAMKD 2322
+SL KN TW L G K+I CK VF K+
Sbjct: 815 ESLHKNQTWDLVIQPSGRKIITCKWVFKKKE 845
Score = 65.1 bits (157), Expect(5) = 2e-44
Identities = 53/158 (33%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Frame = +1
Query: 841 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXXFE-W*NLYSCH 1017
G +I IR +DG L EVR+ + KNLI L W
Sbjct: 319 GTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLIL 378
Query: 1018 ERRQRTKLVLSQRNTMTN--HVMASV--DSDTIKLGHRSLRHTDEKSLQVLAKQGLLNDA 1185
+ R L Q +T+T HV +S D KL H L H E+ +Q+L+K+ LL
Sbjct: 379 KGVMRGTLYFLQGSTVTGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGH 438
Query: 1186 KTCKVVFREYCILCKKKRVKFDTAIHRTE-DLDFVHID 1296
K + F E+C+ K R KF AIHRT+ LD++H D
Sbjct: 439 KVKSLEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHSD 476
Score = 53.5 bits (127), Expect(5) = 2e-44
Identities = 21/47 (44%), Positives = 34/47 (72%)
Frame = +3
Query: 702 YSDVSEWMLHSSVTYHIYPKREWFSSFEKLDNGVVFMGDCHACRIVG 842
+SDV W+L S +YHI P+REWF+++E++D G + M + C++VG
Sbjct: 275 HSDV--WVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVG 319
Score = 48.5 bits (114), Expect(5) = 2e-44
Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 8/167 (4%)
Frame = +2
Query: 1301 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIK---V 1465
G + SL G FV +DDY+R +Y K + F + K +E QTG+KIK
Sbjct: 479 GPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRT 538
Query: 1466 SSVIMVESTRVALFYSYVGI*---SIKILYCQGNTATKWDCRKSELYIAGEGMMLSNLGL 1636
+ + + F GI +++ Q A R ++ + MLSN GL
Sbjct: 539 DNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAE----RMNQTLLERARCMLSNAGL 594
Query: 1637 KNNF*VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 1777
F E ++ A +L NR + I KT +E+WSG+AA +L G
Sbjct: 595 DRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFG 641
Score = 25.0 bits (53), Expect(5) = 2e-44
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 2337 VHYKARLTAKGYAQKEDV 2390
V YKAR+ A+G+ Q+E V
Sbjct: 853 VKYKARVVARGFNQREGV 870
Score = 54.7 bits (130), Expect(2) = 1e-08
Identities = 32/73 (43%), Positives = 42/73 (57%)
Frame = +3
Query: 198 GTSIANHMNVYIKLLAVLANVDEVIADEVKALILLSSLPDEYETFVMTLINDKSSLSYND 377
GT + H+ LL L N+D I DE ALILL SLP +E FV + I K ++S +
Sbjct: 112 GTQLREHLEQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEE 171
Query: 378 VFAALVNYELRRK 416
V +AL + ELR K
Sbjct: 172 VRSALHSRELRHK 184
Score = 35.8 bits (81), Expect(2) = 1e-08
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +1
Query: 49 VCLTQDLKYHVMYEISARKILEILKSYYLTKSIGNRLHLNGRFYRFQLKGGPQLR 213
+CL D+ V E +A + L+S Y+TKS+ N+L L R + ++ G QLR
Sbjct: 62 LCLADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLR 116
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 73.6 bits (179), Expect(4) = 7e-40
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 25/210 (11%)
Frame = +1
Query: 1768 IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQ--IS*QV---ETDVSPQ 1932
+FGC+AY V NGKL+PR K IF+ + GV ++ T++ IS V E+ +
Sbjct: 570 VFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETKKVVISRNVVFHESIMLHD 629
Query: 1933 TSVTTVSFDTPLEVTQQA--------------TQVTDMTDTLGGEDSEYQEGQVQDSIAV 2070
T V ++ +V+ Q + + DS + + SIA
Sbjct: 630 KPSTNVPVESQEKVSVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVQQSPKRSIAK 689
Query: 2071 RKSKRNTK-MSGWLSKDMMVAYTLSVV*K----SVPSTLRKVEVSVKSDKWKYVVMEEMD 2235
+ KRNTK ++ + +VAY LSV + + PST VS ++W + +EM+
Sbjct: 690 DRPKRNTKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEME 749
Query: 2236 SLLKN-TWILPKLSKGNKVIGCK*VFAMKD 2322
SL KN +W L KL K K I CK +F K+
Sbjct: 750 SLEKNHSWELEKLPKEKKPIRCKWIFKRKE 779
Score = 72.4 bits (176), Expect(4) = 7e-40
Identities = 57/172 (33%), Positives = 79/172 (45%), Gaps = 19/172 (11%)
Frame = +1
Query: 841 GICTINIRMYDGMARKLIEVRYALALKKNLILL--------------GAFVXXXXXXXXX 978
GI T+ I+M+DG R L++VR+ LK++LI L G
Sbjct: 249 GIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVM 308
Query: 979 XXXFEW*NLYSCHERRQRTKLVLSQRNTMTNHVMASVDS----DTIKLGHRSLRHTDEKS 1146
++ NLY + T+ +V A DS D L H L H E
Sbjct: 309 KADIKYANLYHL------------RGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIG 356
Query: 1147 LQVLAKQGLLNDAKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1299
L L+K+GLL+ K+ F E+CI K KRVKF+T+ H TE LD+VH D+
Sbjct: 357 LAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 408
Score = 64.7 bits (156), Expect(4) = 7e-40
Identities = 55/163 (33%), Positives = 74/163 (45%), Gaps = 4/163 (2%)
Frame = +2
Query: 1301 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1474
G A+ TS G + VDDY+R++ Y K + F + K +E QT RK+K+
Sbjct: 410 GPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 469
Query: 1475 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDC--RKSELYIAGEGMMLSNLGLKNNF 1648
+F SY I Y +T + R + I+ MLSN L F
Sbjct: 470 DNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQF 529
Query: 1649 *VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 1777
E ++ A +L NR S AID+KT IEVWSG A DL G
Sbjct: 530 WAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFG 572
Score = 25.8 bits (55), Expect(4) = 7e-40
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 2334 DVHYKARLTAKGYAQ 2378
+ YKARL AKGY+Q
Sbjct: 786 EARYKARLVAKGYSQ 800
>gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]
Length = 876
Score = 72.4 bits (176), Expect(5) = 8e-40
Identities = 62/175 (35%), Positives = 78/175 (44%), Gaps = 22/175 (12%)
Frame = +1
Query: 841 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXXFEW*NLYSCHE 1020
GI I I M DG R L VRY L+KNLI LG N YS
Sbjct: 249 GIGQIKIAMDDGGVRTLTNVRYIPELRKNLISLGTLQE---------------NGYSYRS 293
Query: 1021 RRQRTKLVLSQR-------------------NTMTNHVMASV--DSDTIKLGHRSLRHTD 1137
R R L +S+ NT+ V ASV D+D KL H L H
Sbjct: 294 DRDRDILKVSKGALTVMRVKRTAGNIYKLLGNTVVGDV-ASVESDNDATKLWHLRLGHLS 352
Query: 1138 EKSLQVLAKQGLLNDAKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1299
E+ + L K+ LL +CK+ +YC+L K+ RV+F H+TE LD+VH DV
Sbjct: 353 ERGMMELHKRSLLKGVCSCKMDLCKYCVLGKQCRVRFKPMKHKTEGILDYVHSDV 407
Score = 66.6 bits (161), Expect(5) = 8e-40
Identities = 60/215 (27%), Positives = 96/215 (44%), Gaps = 31/215 (14%)
Frame = +1
Query: 1768 IFGCSAYYPVKN---GKLDPRARKVIFISFKCGVGSQQVENTTTRQI--------S*QVE 1914
IFGC + + + KLDP+++K IF+ + GV ++ + ++++ Q
Sbjct: 569 IFGCPTFVHISSEDRSKLDPKSKKCIFVGYSKGVKGFKLWDPVSKKMVLSRDVVFDEQFM 628
Query: 1915 TDVSPQTSVT-TVSFDTPLEVTQQATQVTDMTDTLG-----------GEDSEYQEGQVQD 2058
S +T VT + + EV Q + T +T D+ G +D
Sbjct: 629 LKQSRETEVTESAGGSSGKEVIQVELEPTPNKNTSAVHQQPPEPTPINHDTADSGGASED 688
Query: 2059 SIAV-------RKSKRNTKMSGWLSKDMMVAYTLSVV*KSVPSTLRKVEVSVKSDKWKYV 2217
S+ V + +R+ + + AY L + PST R+ VS + DKW
Sbjct: 689 SVGVDDYQLARDRERRSINPPQRYGFEDLAAYAL-LTSSGDPSTFREAIVSQEKDKWMGA 747
Query: 2218 VMEEMDSLLKN-TWILPKLSKGNKVIGCK*VFAMK 2319
+MEEM+SL KN TW L +L G + IGCK V+ K
Sbjct: 748 MMEEMESLQKNQTWELVQLPMGKRTIGCKWVYKRK 782
Score = 47.8 bits (112), Expect(5) = 8e-40
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3
Query: 720 WMLHSSVTYHIYPKREWFSSFEKLDNGVVFMGDCHACRIVG 842
W+L S +YH+ P REWF++F G V++GD AC I G
Sbjct: 209 WILDSGCSYHMTPNREWFTTFRSGSFGFVYLGDDKACAITG 249
Score = 44.3 bits (103), Expect(5) = 8e-40
Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
Frame = +2
Query: 1301 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKV--- 1465
G + S+ G FV + DD++R+L +Y K + F K +E QTGRKIK
Sbjct: 409 GPTREASMGGSRYFVTFTDDFSRKLWVYFMKQKSEVFSKFKLWKAEVENQTGRKIKYLRS 468
Query: 1466 SSVIMVESTRVALFYSYVGI---*SIKILYCQGNTATKWDCRKSELYIAGEGMMLSNLGL 1636
+ +++ F GI S++ Q A + + +E + GL
Sbjct: 469 DNGTEYTNSQFEKFCEQHGIQRHFSVRKTPQQNGVAERMNMSLTE----RARCLQLKAGL 524
Query: 1637 KNNF*VETLTYANHLTNRLSSSAIDRKTLIEVWSGR 1744
F ET+ A +L NR ++++ K EVW+G+
Sbjct: 525 SKGFWAETINMACYLINRSPRASLEGKVAEEVWTGK 560
Score = 25.0 bits (53), Expect(5) = 8e-40
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +3
Query: 2343 YKARLTAKGYAQKEDV 2390
+KARL AKGY+Q++ +
Sbjct: 793 FKARLVAKGYSQQKGI 808
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 2340
Score = 75.5 bits (184), Expect(4) = 9e-40
Identities = 68/212 (32%), Positives = 105/212 (49%), Gaps = 27/212 (12%)
Frame = +1
Query: 1768 IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQIS*QVETDVSPQTSV-- 1941
+FGC+AY V NGKL+PRA K IF+ + GV ++ T+++ + +V SV
Sbjct: 868 VFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKV--VISRNVVFHESVML 925
Query: 1942 -TTVSFDTPLEVTQQAT-QVTDMTDTLGGEDSE-----YQEGQVQD------------SI 2064
S + P+E ++A+ QV + + + E E ++D SI
Sbjct: 926 HDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDEPVIEDSNSSIVQQSPKRSI 985
Query: 2065 AVRKSKRNTK-MSGWLSKDMMVAYTLSVV*K----SVPSTLRKVEVSVKSDKWKYVVMEE 2229
A + KRN K ++ + +VAY LSV + + PST + VS ++W + +E
Sbjct: 986 AKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDE 1045
Query: 2230 MDSLLKN-TWILPKLSKGNKVIGCK*VFAMKD 2322
M+SL KN TW L KL K K I CK +F K+
Sbjct: 1046 MESLEKNHTWELVKLPKEKKPIRCKWIFKRKE 1077
Score = 69.7 bits (169), Expect(4) = 9e-40
Identities = 55/160 (34%), Positives = 77/160 (48%), Gaps = 7/160 (4%)
Frame = +1
Query: 841 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXXFEW*--NLYSC 1014
GI T+ I+M+DG R L +VR+ LK++LI L + +L
Sbjct: 547 GIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVM 606
Query: 1015 HERRQRTKLVLSQRNTMTNHVMASVDS----DTIKLGHRSLRHTDEKSLQVLAKQGLLND 1182
+ L + T+ +V A DS D L H L H E L L+K+GLL+
Sbjct: 607 KADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDG 666
Query: 1183 AKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1299
K+ F E+CI K KRVKF+T+ H TE LD+VH D+
Sbjct: 667 QSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 706
Score = 65.5 bits (158), Expect(4) = 9e-40
Identities = 55/163 (33%), Positives = 75/163 (46%), Gaps = 4/163 (2%)
Frame = +2
Query: 1301 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1474
G A+ TS G + VDDY+R++ Y K + F + K +E QT RK+K+
Sbjct: 708 GPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 767
Query: 1475 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDC--RKSELYIAGEGMMLSNLGLKNNF 1648
+F SY I Y +T + R + I+ +LSN GL F
Sbjct: 768 DNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQF 827
Query: 1649 *VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 1777
E ++ A +L NR S AID+KT IEVWSG A DL G
Sbjct: 828 WAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFG 870
Score = 25.4 bits (54), Expect(4) = 9e-40
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 2334 DVHYKARLTAKGYAQ 2378
+ YKARL AKGY+Q
Sbjct: 1084 EARYKARLIAKGYSQ 1098
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 76.3 bits (186), Expect(4) = 1e-36
Identities = 65/212 (30%), Positives = 100/212 (47%), Gaps = 27/212 (12%)
Frame = +1
Query: 1768 IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQIS*QVETDVSPQTSV-- 1941
+FGC+AY V NGKL+PRA K IF+ + GV ++ T+++ + +V SV
Sbjct: 696 VFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKV--VISRNVVFHESVIL 753
Query: 1942 -TTVSFDTPLEVTQQAT------------------QVTDMTDTLGGEDSEYQEGQVQDSI 2064
S + P+E ++A+ + + DS + + SI
Sbjct: 754 HDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSI 813
Query: 2065 AVRKSKRNTK-MSGWLSKDMMVAYTLSVV*K----SVPSTLRKVEVSVKSDKWKYVVMEE 2229
A K KRN K ++ + +VAY LSV + + PST + VS ++W + +E
Sbjct: 814 AKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDE 873
Query: 2230 MDSLLKN-TWILPKLSKGNKVIGCK*VFAMKD 2322
M+SL KN TW KL K K I CK +F K+
Sbjct: 874 MESLKKNHTWEFVKLPKEKKPIRCKWIFKRKE 905
Score = 67.0 bits (162), Expect(4) = 1e-36
Identities = 54/160 (33%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Frame = +1
Query: 841 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXXFEW*--NLYSC 1014
GI T+ I+M+DG R L +VR+ LK++LI L + +L
Sbjct: 375 GIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVM 434
Query: 1015 HERRQRTKLVLSQRNTMTNHVMASVDS----DTIKLGHRSLRHTDEKSLQVLAKQGLLND 1182
+ L + T+ +V A DS D L H L H E L L+K+ LL+
Sbjct: 435 KADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDG 494
Query: 1183 AKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1299
K+ F E+CI K KRVKF+T+ H TE LD+VH D+
Sbjct: 495 QSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 534
Score = 56.6 bits (135), Expect(4) = 1e-36
Identities = 52/163 (31%), Positives = 71/163 (43%), Gaps = 4/163 (2%)
Frame = +2
Query: 1301 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1474
G A TS G + VDDY+R++ Y K + F + K +E QT +K+K+
Sbjct: 536 GPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRT 595
Query: 1475 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDC--RKSELYIAGEGMMLSNLGLKNNF 1648
+F SY I Y +T + R + I+ MLSN L F
Sbjct: 596 DNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNADLPKQF 655
Query: 1649 *VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 1777
E ++ +L NR S A D+KT IEVWSG A DL G
Sbjct: 656 WAEAVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFG 698
Score = 25.8 bits (55), Expect(4) = 1e-36
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 2334 DVHYKARLTAKGYAQ 2378
+ YKARL AKGY+Q
Sbjct: 912 EARYKARLVAKGYSQ 926
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 76.3 bits (186), Expect(4) = 1e-36
Identities = 65/212 (30%), Positives = 100/212 (47%), Gaps = 27/212 (12%)
Frame = +1
Query: 1768 IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQIS*QVETDVSPQTSV-- 1941
+FGC+AY V NGKL+PRA K IF+ + GV ++ T+++ + +V SV
Sbjct: 696 VFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKV--VISRNVVFHESVIL 753
Query: 1942 -TTVSFDTPLEVTQQAT------------------QVTDMTDTLGGEDSEYQEGQVQDSI 2064
S + P+E ++A+ + + DS + + SI
Sbjct: 754 HDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSI 813
Query: 2065 AVRKSKRNTK-MSGWLSKDMMVAYTLSVV*K----SVPSTLRKVEVSVKSDKWKYVVMEE 2229
A K KRN K ++ + +VAY LSV + + PST + VS ++W + +E
Sbjct: 814 AKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDE 873
Query: 2230 MDSLLKN-TWILPKLSKGNKVIGCK*VFAMKD 2322
M+SL KN TW KL K K I CK +F K+
Sbjct: 874 MESLKKNHTWEFVKLPKEKKPIRCKWIFKRKE 905
Score = 67.0 bits (162), Expect(4) = 1e-36
Identities = 54/160 (33%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Frame = +1
Query: 841 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXXFEW*--NLYSC 1014
GI T+ I+M+DG R L +VR+ LK++LI L + +L
Sbjct: 375 GIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVM 434
Query: 1015 HERRQRTKLVLSQRNTMTNHVMASVDS----DTIKLGHRSLRHTDEKSLQVLAKQGLLND 1182
+ L + T+ +V A DS D L H L H E L L+K+ LL+
Sbjct: 435 KADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDG 494
Query: 1183 AKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1299
K+ F E+CI K KRVKF+T+ H TE LD+VH D+
Sbjct: 495 QSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 534
Score = 56.6 bits (135), Expect(4) = 1e-36
Identities = 52/163 (31%), Positives = 71/163 (43%), Gaps = 4/163 (2%)
Frame = +2
Query: 1301 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1474
G A TS G + VDDY+R++ Y K + F + K +E QT +K+K+
Sbjct: 536 GPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRT 595
Query: 1475 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDC--RKSELYIAGEGMMLSNLGLKNNF 1648
+F SY I Y +T + R + I+ MLSN L F
Sbjct: 596 DNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNADLPKQF 655
Query: 1649 *VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 1777
E ++ +L NR S A D+KT IEVWSG A DL G
Sbjct: 656 WAEAVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFG 698
Score = 25.8 bits (55), Expect(4) = 1e-36
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 2334 DVHYKARLTAKGYAQ 2378
+ YKARL AKGY+Q
Sbjct: 912 EARYKARLVAKGYSQ 926
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 79.3 bits (194), Expect(3) = 1e-36
Identities = 66/194 (34%), Positives = 97/194 (50%), Gaps = 9/194 (4%)
Frame = +1
Query: 1768 IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQIS*QVETDVSPQTSVTT 1947
+FGC+AY V NGKL+PRA K IF+ + GV ++ P+T
Sbjct: 489 VFGCTAYAHVDNGKLEPRAIKCIFLGYSSGVKGYKL---------------WCPETKKVV 533
Query: 1948 VSFDTPLEVTQQATQVTDMTDTLGGEDSEYQEGQVQ---DSIAVRKSKRNTK-MSGWLSK 2115
+S + V ++ + D T +S+ ++ VQ SIA K KRNTK ++ +
Sbjct: 534 ISRNV---VFHESVMLHDKPSTNVPVESQ-EKASVQFPKRSIAKDKPKRNTKPPQRYIEE 589
Query: 2116 DMMVAYTLSVV*K----SVPSTLRKVEVSVKSDKWKYVVMEEMDSLLKN-TWILPKLSKG 2280
+VAY LSV + + PST + VS ++W + +EM+SL KN TW L KL K
Sbjct: 590 ANIVAYALSVTEEIEGNAEPSTYSEAIVSDDCNRWITTMHDEMESLEKNHTWELVKLPKE 649
Query: 2281 NKVIGCK*VFAMKD 2322
K I CK +F K+
Sbjct: 650 KKPIRCKWIFKRKE 663
Score = 65.5 bits (158), Expect(3) = 1e-36
Identities = 53/160 (33%), Positives = 75/160 (46%), Gaps = 7/160 (4%)
Frame = +1
Query: 841 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXXFEW*--NLYSC 1014
GI + I+M+DG L +VR+ LK++LI L + +L
Sbjct: 172 GIGIVQIKMFDGCISTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVM 231
Query: 1015 HERRQRTKLVLSQRNTMTNHVMASVDS----DTIKLGHRSLRHTDEKSLQVLAKQGLLND 1182
+ L + T+ +V A DS D L H L H E L L+K+GLL+
Sbjct: 232 KADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDG 291
Query: 1183 AKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1299
K+ F E+CI K KRVKF+T+ H TE LD+VH D+
Sbjct: 292 QSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 331
Score = 60.5 bits (145), Expect(3) = 1e-36
Identities = 54/162 (33%), Positives = 73/162 (45%), Gaps = 3/162 (1%)
Frame = +2
Query: 1301 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1474
G A+ TS G + VDDY+R++ Y K + F + K +E QT RK+K+
Sbjct: 333 GPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 392
Query: 1475 IMVESTRVALFYSYVGI*SIKILYC-QGNTATKWDCRKSELYIAGEGMMLSNLGLKNNF* 1651
+F SY I Y Q N + R + I+ MLSN GL F
Sbjct: 393 DNGMEFCSKIFKSYCKSEGIVRHYTPQQNGVAE---RMNRTIISKARCMLSNAGLPKQFW 449
Query: 1652 VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 1777
++ +L NR S AID+KT I+VWSG A DL G
Sbjct: 450 AAAVSTTCYLINRSPSYAIDKKTPIKVWSGFPANYSDLRVFG 491
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 73.9 bits (180), Expect(4) = 5e-36
Identities = 65/206 (31%), Positives = 94/206 (45%), Gaps = 22/206 (10%)
Frame = +1
Query: 1768 IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQ----IS*QV---ETDVS 1926
+FGC+AY K KL+PRA K IF+ + GV ++ T + IS V E D+S
Sbjct: 619 VFGCTAYVHTKTDKLEPRAVKCIFLGYPKGVKGYKLWIETQGKGKCIISRDVTFNEQDMS 678
Query: 1927 PQTSVTTV------SFDTPLEVTQ-----QATQVTDMTDTLGGEDSEYQEGQVQDSIAVR 2073
QT V F+ E Q + + T + + +E +G ++
Sbjct: 679 KQTPAKDVEGLDQLQFEVEHETLQPEKSKETSSKTAQEEIVHERQNEPTQGLESYNLVRD 738
Query: 2074 KSKRNTKMSGWLSKDMMVAYTLSVV*KSV---PSTLRKVEVSVKSDKWKYVVMEEMDSLL 2244
+ KR K + M A+ LSV + V P T ++ S ++D+W + EEMDSL
Sbjct: 739 RQKRQVKPPKRYGQAEMTAFALSVAEEIVDMEPKTYQEAINSNEADQWVKAIQEEMDSLR 798
Query: 2245 KN-TWILPKLSKGNKVIGCK*VFAMK 2319
KN TW L K KV+G K VF K
Sbjct: 799 KNETWELVTKPKDRKVVGSKWVFKRK 824
Score = 73.2 bits (178), Expect(4) = 5e-36
Identities = 53/157 (33%), Positives = 75/157 (47%), Gaps = 4/157 (2%)
Frame = +1
Query: 841 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXXFEW*N-LYSCH 1017
G T+ I+ YDG+ R L +VRY LK+NLI LG +
Sbjct: 301 GTGTVRIKHYDGIERVLEDVRYIPELKRNLISLGMLDKSGYTFKSEPNSLRVARGSLTVM 360
Query: 1018 ERRQRTKLVLSQRNTMTNHVMASVDSD--TIKLGHRSLRHTDEKSLQVLAKQGLLNDAKT 1191
+ + L T+T V + D T KL H+ L H + LQ L KQG+L + K
Sbjct: 361 KGTIKNGLYTLIGQTVTGKVSTVLKEDVGTTKLWHQRLGHISHRGLQELEKQGVLGNYKL 420
Query: 1192 CKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1299
+ F E+C+ K RVKF AIH T++ LD++H D+
Sbjct: 421 TDLPFCEHCVFGKATRVKFAKAIHETQNQLDYIHSDL 457
Score = 47.8 bits (112), Expect(4) = 5e-36
Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 8/167 (4%)
Frame = +2
Query: 1301 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIK---V 1465
G ++ S+ G F+ +DDY+R++ IY K + F + K +E QT RK+K
Sbjct: 459 GPSRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSETFLKFKEWKILVETQTSRKVKKLRT 518
Query: 1466 SSVIMVESTRVALFYSYVGI*---SIKILYCQGNTATKWDCRKSELYIAGEGMMLSNLGL 1636
+ + S GI +++ Q A R + + MLS+ GL
Sbjct: 519 DNGLEFLSNDFNSLCQKEGIARHRTVRYTPQQNGLAE----RMNRTILERVRCMLSSSGL 574
Query: 1637 KNNF*VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 1777
F E A HL NR SSA+ KT E W+G+AA L G
Sbjct: 575 SKVFWAEAAETAVHLINRSPSSALQFKTPQEKWTGKAADYQHLKVFG 621
Score = 28.5 bits (62), Expect(4) = 5e-36
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 2343 YKARLTAKGYAQKEDV 2390
YKARL AKG++QKE V
Sbjct: 835 YKARLVAKGFSQKEGV 850
Score = 48.9 bits (115), Expect(2) = 5e-06
Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Frame = +3
Query: 183 FSVEGGTSIANHMNVYIKLLAVLANVDEVIADEVKALILLSSLPDEYETFVMTLINDKSS 362
F + G SI H++ + K++ L N+D I+DE KA++LL+SL Y ++ + S
Sbjct: 110 FKMTPGMSIEXHLDHFNKIILDLENIDITISDEDKAILLLTSLDASYTNMKDAIMYGRDS 169
Query: 363 LSYNDVFAALVNYEL-RRKDWKSSSGK 440
L++++V + L EL ++++ K SG+
Sbjct: 170 LTFDEVQSILHARELQKQEESKEESGE 196
Score = 32.7 bits (73), Expect(2) = 5e-06
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 94 SARKILEILKSYYLTKSIGNRLHLNGRFYRFQLKGG 201
SA ++ L+S Y+TKS+ NRLH + Y F++ G
Sbjct: 80 SAAEVWLKLESLYMTKSLANRLHKKIKLYTFKMTPG 115
>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa]
Length = 944
Score = 77.0 bits (188), Expect(3) = 7e-36
Identities = 65/194 (33%), Positives = 96/194 (49%), Gaps = 9/194 (4%)
Frame = +1
Query: 1768 IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQIS*QVETDVSPQTSVTT 1947
+FGC+AY V NGKL+PRA K IF+ + GV ++ P+T
Sbjct: 489 VFGCTAYAHVDNGKLEPRAIKCIFLGYSSGVKGYKL---------------WCPETKKVV 533
Query: 1948 VSFDTPLEVTQQATQVTDMTDTLGGEDSEYQEGQVQ---DSIAVRKSKRNTK-MSGWLSK 2115
+S + V ++ + D T +S+ ++ VQ SIA K KRNTK ++ +
Sbjct: 534 ISRNV---VFHESVMLHDKPSTNVPVESQ-EKASVQFPKRSIAKDKPKRNTKPPQRYIEE 589
Query: 2116 DMMVAYTLSVV*K----SVPSTLRKVEVSVKSDKWKYVVMEEMDSLLKN-TWILPKLSKG 2280
+VAY LSV + + PS + VS ++W + +EM+SL KN TW L KL K
Sbjct: 590 ANIVAYALSVTEEIEGNAEPSIYSEAIVSDDCNRWITTMHDEMESLEKNHTWELVKLPKE 649
Query: 2281 NKVIGCK*VFAMKD 2322
K I CK +F K+
Sbjct: 650 KKPIRCKWIFKRKE 663
Score = 65.5 bits (158), Expect(3) = 7e-36
Identities = 53/160 (33%), Positives = 75/160 (46%), Gaps = 7/160 (4%)
Frame = +1
Query: 841 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXXFEW*--NLYSC 1014
GI + I+M+DG L +VR+ LK++LI L + +L
Sbjct: 172 GIGIVQIKMFDGCISTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVM 231
Query: 1015 HERRQRTKLVLSQRNTMTNHVMASVDS----DTIKLGHRSLRHTDEKSLQVLAKQGLLND 1182
+ L + T+ +V A DS D L H L H E L L+K+GLL+
Sbjct: 232 KADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDG 291
Query: 1183 AKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1299
K+ F E+CI K KRVKF+T+ H TE LD+VH D+
Sbjct: 292 QSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDL 331
Score = 60.5 bits (145), Expect(3) = 7e-36
Identities = 54/162 (33%), Positives = 73/162 (45%), Gaps = 3/162 (1%)
Frame = +2
Query: 1301 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1474
G A+ TS G + VDDY+R++ Y K + F + K +E QT RK+K+
Sbjct: 333 GPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 392
Query: 1475 IMVESTRVALFYSYVGI*SIKILYC-QGNTATKWDCRKSELYIAGEGMMLSNLGLKNNF* 1651
+F SY I Y Q N + R + I+ MLSN GL F
Sbjct: 393 DNGMEFCSKIFKSYCKSEGIVRHYTPQQNGVAE---RMNRTIISKARCMLSNAGLPKQFW 449
Query: 1652 VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 1777
++ +L NR S AID+KT I+VWSG A DL G
Sbjct: 450 AAAVSTTCYLINRSPSYAIDKKTPIKVWSGFPANYSDLRVFG 491
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gb|AAT44170.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1175
Score = 65.9 bits (159), Expect(4) = 3e-35
Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 22/197 (11%)
Frame = +1
Query: 1768 IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQ--------IS*QVETDV 1923
+FGC+AY V NGKL+PRA K +F+ + GV ++ N T + + V +
Sbjct: 549 VFGCTAYAHVNNGKLEPRAIKCLFLGYGSGVKGYKLWNPETNKTFMSRSVVFNESVMFND 608
Query: 1924 SPQTSVTTVSFDTPLE-VTQQATQVTDM-TDTLGGEDSEYQEG-----QVQDS-IAVRKS 2079
S T V FD + V+ Q V D T+ +G + ++ + Q QD IA R++
Sbjct: 609 SLPTDVIPGGFDEEQQYVSVQVEHVDDQKTEIVGNDVNDTVQHSPPVLQPQDEPIAHRRT 668
Query: 2080 KRNTKMSGWLSKDMMVAYTLSVV*KSVPSTLR-----KVEVSVKSDKWKYVVMEEMDSLL 2244
KR+ L ++ + Y + + V +TL +V VS +KW + EEM SL
Sbjct: 669 KRSCGAPVRLIEECDMVYYAFICAEQVENTLELATYTEVVVSGDREKWISAMQEEMQSLE 728
Query: 2245 KN-TWILPKLSKGNKVI 2292
KN TW L L K K +
Sbjct: 729 KNDTWELVHLPKQKKPV 745
Score = 63.9 bits (154), Expect(4) = 3e-35
Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 8/161 (4%)
Frame = +1
Query: 841 GICTINIRMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXXFEW*N---LYS 1011
GI ++ I+ +DGM R L +VR+ + +NLI L + +Y
Sbjct: 228 GIGSVQIKTHDGMTRTLKDVRHIPRMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYM 287
Query: 1012 CHERRQRTKLVLSQRNTMTNHVMASVDS----DTIKLGHRSLRHTDEKSLQVLAKQGLLN 1179
+ VL + +T+ +V A+V S + H L H E + L K+ LL+
Sbjct: 288 IGDMNSANLYVL-RGSTLHGYVTAAVVSKDEPSKTNMWHMRLGHMSELGMAELMKRNLLD 346
Query: 1180 DAKTCKVVFREYCILCKKKRVKFDTAIHRTED-LDFVHIDV 1299
+ F E+C+ K KRVKF+T++HRT+ LD+VH D+
Sbjct: 347 GCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADL 387
Score = 47.4 bits (111), Expect(4) = 3e-35
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +3
Query: 696 ICYSDVSEWMLHSSVTYHIYPKREWFSSFEKLDNG-VVFMGDCHACRIVG 842
+C S EW+L ++ ++HI R+WFSS++ + NG VV MGD + IVG
Sbjct: 179 VCVSSHDEWILDTTCSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVG 228
Score = 43.5 bits (101), Expect(4) = 3e-35
Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 4/163 (2%)
Frame = +2
Query: 1301 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1474
G ++ SL G + +DDY+R++ Y K + F + K I+ QT +++KV
Sbjct: 389 GPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIKRQTEKEVKVLRT 448
Query: 1475 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDC--RKSELYIAGEGMMLSNLGLKNNF 1648
F Y I + + T + R + I+ MLSN + F
Sbjct: 449 DNGGGFCSDAFDDYCRKEGIVMHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRF 508
Query: 1649 *VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 1777
E A +L NR S ++++KT IEVWSG A L G
Sbjct: 509 WAEAAKTACYLINRSPSISLNKKTPIEVWSGMPANYSQLRVFG 551
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gb|AAM10749.1|AC112514_2 Putative retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 72.4 bits (176), Expect(3) = 3e-34
Identities = 67/212 (31%), Positives = 100/212 (47%), Gaps = 27/212 (12%)
Frame = +1
Query: 1768 IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQIS*QVETDVSPQTSV-- 1941
+FGC AY V N KL+PRA K IF+ + GV ++ T+++ + +V SV
Sbjct: 622 VFGCIAYAHVDNSKLEPRAIKCIFLGYPSGVKGYKLWCPETKKV--VISRNVVFHESVML 679
Query: 1942 -TTVSFDTPLEVTQQAT-QVTDMTDT-----------------LGGEDSEYQEGQVQDSI 2064
S + P+E ++A+ QV + + + DS + + SI
Sbjct: 680 HDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINLDAPVIEDSDSSIVQQSPKHSI 739
Query: 2065 AVRKSKRNTK-MSGWLSKDMMVAYTLSVV*K----SVPSTLRKVEVSVKSDKWKYVVMEE 2229
A K KRN K ++ + +VAY LSV + PST VS ++W + +E
Sbjct: 740 AKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTYSDAIVSDDCNRWITAMHDE 799
Query: 2230 MDSLLKN-TWILPKLSKGNKVIGCK*VFAMKD 2322
M+SL KN TW L KL K K I CK +F K+
Sbjct: 800 MESLEKNHTWELVKLPKEKKPIRCKWIFKRKE 831
Score = 65.1 bits (157), Expect(3) = 3e-34
Identities = 55/163 (33%), Positives = 75/163 (46%), Gaps = 4/163 (2%)
Frame = +2
Query: 1301 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1474
G A+ TS G + VDDY+R++ Y K + F + K +E QT RK+K+
Sbjct: 462 GPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 521
Query: 1475 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDC--RKSELYIAGEGMMLSNLGLKNNF 1648
+F SY I Y +T + R + I+ MLSN GL F
Sbjct: 522 DNGMDFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQF 581
Query: 1649 *VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 1777
E ++ A +L NR S AID+KT I+VWSG A DL G
Sbjct: 582 WAEAVSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFG 624
Score = 59.7 bits (143), Expect(3) = 3e-34
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Frame = +1
Query: 1090 DSDTIKLGHRSLRHTDEKSLQVLAKQGLLNDAKTCKVVFREYCILCKKKRVKFDTAIHRT 1269
+SD L H L H E L L+K+GLL+ K+ F E+CI K KRVKF+T+ H T
Sbjct: 390 NSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTT 449
Query: 1270 ED-LDFVHIDV 1299
E LD+VH D+
Sbjct: 450 EGILDYVHSDL 460
>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa]
Length = 1009
Score = 73.9 bits (180), Expect(3) = 2e-32
Identities = 64/212 (30%), Positives = 99/212 (46%), Gaps = 27/212 (12%)
Frame = +1
Query: 1768 IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQIS*QVETDVSPQTSV-- 1941
+F C+AY V NGKL+PRA K IF+ + GV ++ T+++ + +V SV
Sbjct: 482 VFSCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKV--VINRNVVFHESVML 539
Query: 1942 -TTVSFDTPLEVTQQAT------------------QVTDMTDTLGGEDSEYQEGQVQDSI 2064
S + P+E ++A+ + + DS + + SI
Sbjct: 540 HDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVQQSPKRSI 599
Query: 2065 AVRKSKRNTK-MSGWLSKDMMVAYTLSVV*K----SVPSTLRKVEVSVKSDKWKYVVMEE 2229
A + KRNTK ++ + +V Y LSV + + PST VS ++W + +E
Sbjct: 600 AKDRPKRNTKPPRKYIEEANIVTYALSVAEEIEGNTEPSTYSDAIVSDDCNRWITAMHDE 659
Query: 2230 MDSLLKN-TWILPKLSKGNKVIGCK*VFAMKD 2322
M+SL KN TW L KL K K I CK +F K+
Sbjct: 660 MESLEKNHTWELVKLPKEKKPIRCKWIFKRKE 691
Score = 58.9 bits (141), Expect(3) = 2e-32
Identities = 52/159 (32%), Positives = 72/159 (45%), Gaps = 4/159 (2%)
Frame = +2
Query: 1301 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1474
G TS G + +DDY+R++ Y K + F + K +E QT RK+K+
Sbjct: 322 GPTCKTSFGGARYMMTIIDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRP 381
Query: 1475 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDC--RKSELYIAGEGMMLSNLGLKNNF 1648
+F SY I Y +T + R + I+ MLSN GL F
Sbjct: 382 DNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQF 441
Query: 1649 *VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDL 1765
E ++ A +L NR S AID+KT IEVWS A+ DL
Sbjct: 442 WAEAVSTACYLINRSPSYAIDKKTPIEVWSSSPAKYSDL 480
Score = 58.5 bits (140), Expect(3) = 2e-32
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Frame = +1
Query: 1090 DSDTIKLGHRSLRHTDEKSLQVLAKQGLLNDAKTCKVVFREYCILCKKKRVKFDTAIHRT 1269
+SD L H L H E L L+K+G+L+ K++F E+CI K RVKF+T+ H T
Sbjct: 250 NSDATNLWHMRLGHMSEIGLAELSKRGMLDGQSIGKLIFCEHCIFGKHHRVKFNTSTHTT 309
Query: 1270 ED-LDFVHIDV 1299
E LD+VH D+
Sbjct: 310 EGILDYVHSDL 320
>emb|CDP17739.1| unnamed protein product [Coffea canephora]
Length = 435
Score = 76.6 bits (187), Expect(3) = 7e-32
Identities = 57/158 (36%), Positives = 77/158 (48%), Gaps = 4/158 (2%)
Frame = +2
Query: 1301 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRS--RYFHQMKKCIELQTGRKIKVSSV 1474
G AK SL G+Y FV ++DD++R + ++ K F + K +E QTGRKIK+
Sbjct: 119 GPAKTPSLGGRYYFVTFIDDFSRRVWVFTMKSKDEVLEIFLKWKARVENQTGRKIKILRT 178
Query: 1475 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDC--RKSELYIAGEGMMLSNLGLKNNF 1648
+ F I + T + R ++ + MLSN L F
Sbjct: 179 DNGGEYKSDPFQKIGQECGIVQHFTVRKTPQQNGVSERMNKTLVEKVHCMLSNARLGRKF 238
Query: 1649 *VETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYD 1762
ET+TYA HL NRL SSAI KT +EVWSG+ DYD
Sbjct: 239 WAETVTYAQHLVNRLPSSAIGGKTPLEVWSGKPTTDYD 276
Score = 75.1 bits (183), Expect(3) = 7e-32
Identities = 38/71 (53%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Frame = +1
Query: 1090 DSDTIKLGHRSLRHTDEKSLQVLAKQGLLNDAKTCKVVFREYCILCKKKRVKFDTAIHRT 1269
D++ KL H L H EKSLQ LAKQGLL K CK+ F E+C+L K+++VKF T IH T
Sbjct: 47 DAEATKLWHMRLGHAGEKSLQNLAKQGLLKGTKVCKLEFCEHCVLEKQRKVKFGTGIHNT 106
Query: 1270 ED-LDFVHIDV 1299
+ LD+VH +V
Sbjct: 107 KGILDYVHSNV 117
Score = 37.7 bits (86), Expect(3) = 7e-32
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +1
Query: 1768 IFGCSAYYPVKNGKLDPRARKVIFISFKCGV 1860
IF +AYY V KLDPRA+K IF+ GV
Sbjct: 280 IFYSTAYYHVNESKLDPRAKKAIFMGLNAGV 310
>gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 593
Score = 71.6 bits (174), Expect(5) = 1e-29
Identities = 78/270 (28%), Positives = 109/270 (40%), Gaps = 20/270 (7%)
Frame = +1
Query: 541 CAFCKQNEHWXXXXXXXXXXXXQNSKHASEINIVKSDGND*FFYIFFPLVLI-----FVT 705
C +CK+ HW K ++ ++V + D F L ++ FV
Sbjct: 215 CNYCKEPGHWKKDCP----------KKRNQKSVVVAAQEDSSFENELVLSIVDNHQHFVE 264
Query: 706 QMCL-SGCFIAVLPITSTLRGNGSPASRSWTMEWYS-------WAIAMRAE*WGICTINI 861
Q L SGC + P +RSW + + M + I TI I
Sbjct: 265 QWVLDSGCSYHMCP------------NRSWFLTYEKKFGGDVFMGNDMACKTISIGTIQI 312
Query: 862 RMYDGMARKLIEVRYALALKKNLILLGAFVXXXXXXXXXXXXFEW*NLYSCHERRQRTKL 1041
+M+DG+ R L EVR+ LKKNLI +G E N S R K
Sbjct: 313 KMHDGVIRTLTEVRHVPDLKKNLISVGVLDTKGFKCNVEGGVMEI-NKGSTIVIRGIKKG 371
Query: 1042 VLSQRNTMTNHVMASVDS------DTIKLGHRSLRHTDEKSLQVLAKQGLLNDAKTCKVV 1203
L TN + S+ D +L H L H E+ + VL+KQ LL D ++
Sbjct: 372 NLYMLQGSTNLISESISVADKHTLDLTRLWHMRLGHMSERGMMVLSKQKLLRDHTVKELK 431
Query: 1204 FREYCILCKKKRVKFDTAIHRTED-LDFVH 1290
F E+C+L K R KF A H T+ LD+VH
Sbjct: 432 FCEHCVLGKHHRSKFPKAQHTTKSTLDYVH 461
Score = 48.1 bits (113), Expect(5) = 1e-29
Identities = 28/79 (35%), Positives = 47/79 (59%)
Frame = +3
Query: 201 TSIANHMNVYIKLLAVLANVDEVIADEVKALILLSSLPDEYETFVMTLINDKSSLSYNDV 380
T + +H++ +L L +++ I DE A+ILL+SLP YE+FV +L K ++ +V
Sbjct: 103 TPLQDHLDELNSILMELRDINVKIEDEDAAMILLASLPPSYESFVNSLSVGKECITMEEV 162
Query: 381 FAALVNYELRRKDWKSSSG 437
++L + ELR K +S G
Sbjct: 163 KSSLHSRELRFKASANSEG 181
Score = 39.3 bits (90), Expect(5) = 1e-29
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3
Query: 1536 RYFTVRETLQQNGIAERVNCTLLEKV*C 1619
R +TVR T QQNG+A+R+N TLLEK C
Sbjct: 547 RQYTVRNTPQQNGVAKRMNRTLLEKARC 574
Score = 31.6 bits (70), Expect(5) = 1e-29
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 1301 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRS--RYFHQMKKCIELQTGRKIK 1462
G ++ SL G F+ +DDY+R I+ K +YF + K +E QTG++IK
Sbjct: 466 GPSRVPSLGGGRYFLSIIDDYSRMTWIFIMKHKNQAFKYFKEWKILVENQTGKRIK 521
Score = 30.4 bits (67), Expect(5) = 1e-29
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 1 RREDLEQNEYDVQS-DKVCLTQDLKYHVMYEISARKILEILKSYYLTKSIGNRLHLNGRF 177
+ EDL + E S + L+ ++ Y V + +A + L+ Y+TKSI N+L L R
Sbjct: 35 KNEDLAEQEEKAHSLILLSLSDEVLYEVADQETASGLWLKLEKLYMTKSICNKLLLKRRL 94
Query: 178 YRFQLK 195
+ +K
Sbjct: 95 FGLHMK 100
>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1262
Score = 72.4 bits (176), Expect(3) = 1e-29
Identities = 67/212 (31%), Positives = 100/212 (47%), Gaps = 27/212 (12%)
Frame = +1
Query: 1768 IFGCSAYYPVKNGKLDPRARKVIFISFKCGVGSQQVENTTTRQIS*QVETDVSPQTSV-- 1941
+FGC AY V N KL+PRA K IF+ + GV ++ T+++ + +V SV
Sbjct: 659 VFGCIAYAHVDNSKLEPRAIKCIFLGYPSGVKGYKLWCPETKKV--VISRNVVFHESVML 716
Query: 1942 -TTVSFDTPLEVTQQAT-QVTDMTDT-----------------LGGEDSEYQEGQVQDSI 2064
S + P+E ++A+ QV + + + DS + + SI
Sbjct: 717 HDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINLDAPVIEDSDSSIVQQSPKHSI 776
Query: 2065 AVRKSKRNTK-MSGWLSKDMMVAYTLSVV*K----SVPSTLRKVEVSVKSDKWKYVVMEE 2229
A K KRN K ++ + +VAY LSV + PST VS ++W + +E
Sbjct: 777 AKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTYSDAIVSDDCNRWITAMHDE 836
Query: 2230 MDSLLKN-TWILPKLSKGNKVIGCK*VFAMKD 2322
M+SL KN TW L KL K K I CK +F K+
Sbjct: 837 MESLEKNHTWELVKLPKEKKPIRCKWIFKRKE 868
Score = 59.7 bits (143), Expect(3) = 1e-29
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Frame = +1
Query: 1090 DSDTIKLGHRSLRHTDEKSLQVLAKQGLLNDAKTCKVVFREYCILCKKKRVKFDTAIHRT 1269
+SD L H L H E L L+K+GLL+ K+ F E+CI K KRVKF+T+ H T
Sbjct: 444 NSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTT 503
Query: 1270 ED-LDFVHIDV 1299
E LD+VH D+
Sbjct: 504 EGILDYVHSDL 514
Score = 49.7 bits (117), Expect(3) = 1e-29
Identities = 48/161 (29%), Positives = 67/161 (41%), Gaps = 2/161 (1%)
Frame = +2
Query: 1301 GSAKNTSLRGKY*FVFYVDDYARELGIYHG**KRSRY--FHQMKKCIELQTGRKIKVSSV 1474
G A+ TS G + VDDY+R++ Y K + F + K +E QT RK+K+
Sbjct: 516 GPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 575
Query: 1475 IMVESTRVALFYSYVGI*SIKILYCQGNTATKWDCRKSELYIAGEGMMLSNLGLKNNF*V 1654
+F SY I Y +T + + L F
Sbjct: 576 DNGMDFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAER---------------LPKQFWA 620
Query: 1655 ETLTYANHLTNRLSSSAIDRKTLIEVWSGRAAQDYDLGYLG 1777
E ++ A +L NR S AID+KT I+VWSG A DL G
Sbjct: 621 EAVSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFG 661