BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00018636
         (1166 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo...   344   e-126
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar...   319   e-116
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar...   319   e-116
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo...   303   e-112
gb|PHT40240.1| Retrovirus-related Pol polyprotein from transposo...   298   e-112
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711...   312   e-111
gb|KYP53356.1| Retrovirus-related Pol polyprotein from transposo...   295   e-110
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     305   e-109
gb|ASR75372.1| retrotransposon protein [Oryza nivara]                 306   e-109
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   304   e-109
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     305   e-108
ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024...   291   e-108
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   305   e-108
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   301   e-107
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   296   e-105
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   296   e-105
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     301   e-105
gb|PRQ16639.1| putative RNA-directed DNA polymerase [Rosa chinen...   281   e-104
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     288   e-104
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa]                        293   e-104

>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1032

 Score =  344 bits (883), Expect(2) = e-126
 Identities = 180/293 (61%), Positives = 211/293 (72%), Gaps = 2/293 (0%)
 Frame = +2

Query: 23   EAELSSESNRWCNAMADEMISLHKNDIWELTKLPKGKKAIGCK*VYAKKEG-SPKEGVRF 199
            EA   SE ++W +AM++EM SL +N  W+L  LPKGKKAIGCK VYAKK+G S K  VR+
Sbjct: 584  EAVKGSEEDKWRSAMSEEMESLRRNQTWKLANLPKGKKAIGCKWVYAKKDGFSDKSEVRY 643

Query: 200  KARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXXXXXXXKTAFLHDD-SD 376
            KARLVAKGYAQ EG+DYNE FSPVVKHSSIR+                 KTAFLH D  +
Sbjct: 644  KARLVAKGYAQKEGIDYNEVFSPVVKHSSIRVLLALVAQLDMELVQMDVKTAFLHGDLEE 703

Query: 377  EIYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFMFGKGYTRSPYDPCVYL 556
            EIYMTQP GF+V GKE   CKL+KSLYG +QS RQWYKRFD FM  + YTRS YD CVYL
Sbjct: 704  EIYMTQPEGFKVAGKENMFCKLEKSLYGLKQSPRQWYKRFDKFMLRQKYTRSKYDHCVYL 763

Query: 557  HKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEMKDLGEVRKILGMEIERDRK 736
             KL  G +IYL LYVDDMLI SKN   I KLK QL+  FEMKDLGE +KILGMEI RDRK
Sbjct: 764  RKLHDGSFIYLLLYVDDMLIASKNKEEIEKLKTQLNGEFEMKDLGEAKKILGMEISRDRK 823

Query: 737  RGRLFLTQKEYLRKMFQKLNFDSDAKVVNTPLAPHFKLSAWMSP*MLEDREYV 895
             GRL LTQKEYL+++ ++     ++K V+TPLA HFKLSA +SP    ++ Y+
Sbjct: 824  LGRLCLTQKEYLKRVLKRFGISDESKPVSTPLASHFKLSANLSPRDAAEKAYM 876



 Score =  139 bits (350), Expect(2) = e-126
 Identities = 66/92 (71%), Positives = 78/92 (84%)
 Frame = +3

Query: 891  MSYVPYANAVGSLMYAMVCTRPNLSQAVSMVSRYMHDPGRGHWEAVKWILRYIKGTVDMG 1070
            MS VPYA+AVGSLMYAMVCTRP++S AV +VSRYMH+PG+ HW+AVKWILRYI  TVD+G
Sbjct: 876  MSKVPYASAVGSLMYAMVCTRPDISYAVGVVSRYMHNPGKEHWQAVKWILRYILNTVDVG 935

Query: 1071 LVYEKANDGKQECVGYVDSDYAGDLDKHRSTT 1166
            LV+++  DG Q  VGY DS+YAGDLD  RSTT
Sbjct: 936  LVFQQEQDG-QNVVGYCDSNYAGDLDNRRSTT 966


>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
          Length = 2351

 Score =  319 bits (818), Expect(2) = e-116
 Identities = 171/291 (58%), Positives = 199/291 (68%), Gaps = 2/291 (0%)
 Frame = +2

Query: 23   EAELSSESNRWCNAMADEMISLHKNDIWELTKLPKGKKAIGCK*VYAKKEGS-PKEGVRF 199
            EA    ES +W  AM++E+ SLHKN  WEL K P  +K +GCK V+ KKEG    E  RF
Sbjct: 1306 EAVTCDESAQWAIAMSEEIESLHKNHTWELVKPPSNQKIVGCKWVFKKKEGILGVEATRF 1365

Query: 200  KARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXXXXXXXKTAFLHDDSDE 379
            KARLVAKG+ Q EG+DYNE FSPVVKHSSIR+                 KTAFLH + +E
Sbjct: 1366 KARLVAKGFTQKEGIDYNEVFSPVVKHSSIRVLLAMVAKSDLELEQLDVKTAFLHGELEE 1425

Query: 380  -IYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFMFGKGYTRSPYDPCVYL 556
             IYM QP GF V GKE+ VC LKKSLYG +QS RQWYKRFDSFM   GYTR  YD CVY 
Sbjct: 1426 TIYMRQPEGFTVPGKEDHVCLLKKSLYGLKQSPRQWYKRFDSFMIQHGYTRCDYDACVYH 1485

Query: 557  HKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEMKDLGEVRKILGMEIERDRK 736
             KL  G +IYL LYVDDMLI SKN   I KLK QLS  FEMKDLG  +KILGM+I RDRK
Sbjct: 1486 RKLSDGSHIYLLLYVDDMLIASKNMSEINKLKSQLSGEFEMKDLGAAKKILGMDIHRDRK 1545

Query: 737  RGRLFLTQKEYLRKMFQKLNFDSDAKVVNTPLAPHFKLSAWMSP*MLEDRE 889
             G+L ++QK Y+ K+ Q+   D  AK V+TPLAPHFKLSA +SP   E+++
Sbjct: 1546 AGKLRVSQKNYIEKVLQRFGMDK-AKTVSTPLAPHFKLSAELSPQSDEEKQ 1595



 Score =  130 bits (327), Expect(2) = e-116
 Identities = 60/92 (65%), Positives = 77/92 (83%)
 Frame = +3

Query: 891  MSYVPYANAVGSLMYAMVCTRPNLSQAVSMVSRYMHDPGRGHWEAVKWILRYIKGTVDMG 1070
            MS++PY++AVGS+MYAMVCTRP++S AVS+VSRYM  PG+ HW+AVKWILRY++G+ D+ 
Sbjct: 1597 MSHIPYSSAVGSVMYAMVCTRPDISHAVSVVSRYMSCPGKEHWQAVKWILRYLRGSADLC 1656

Query: 1071 LVYEKANDGKQECVGYVDSDYAGDLDKHRSTT 1166
            LVY++ +D      GYVDSDYAGDLDK RS T
Sbjct: 1657 LVYDQ-SDCTSSVTGYVDSDYAGDLDKRRSLT 1687


>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
          Length = 1841

 Score =  319 bits (818), Expect(2) = e-116
 Identities = 171/291 (58%), Positives = 199/291 (68%), Gaps = 2/291 (0%)
 Frame = +2

Query: 23   EAELSSESNRWCNAMADEMISLHKNDIWELTKLPKGKKAIGCK*VYAKKEGS-PKEGVRF 199
            EA    ES +W  AM++E+ SLHKN  WEL K P  +K +GCK V+ KKEG    E  RF
Sbjct: 1327 EAVTCDESAQWAIAMSEEIESLHKNHTWELVKPPSNQKIVGCKWVFKKKEGILGVEATRF 1386

Query: 200  KARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXXXXXXXKTAFLHDDSDE 379
            KARLVAKG+ Q EG+DYNE FSPVVKHSSIR+                 KTAFLH + +E
Sbjct: 1387 KARLVAKGFTQKEGIDYNEVFSPVVKHSSIRVLLAMVAKSDLELEQLDVKTAFLHGELEE 1446

Query: 380  -IYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFMFGKGYTRSPYDPCVYL 556
             IYM QP GF V GKE+ VC LKKSLYG +QS RQWYKRFDSFM   GYTR  YD CVY 
Sbjct: 1447 TIYMRQPEGFTVPGKEDHVCLLKKSLYGLKQSPRQWYKRFDSFMIQHGYTRCDYDACVYH 1506

Query: 557  HKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEMKDLGEVRKILGMEIERDRK 736
             KL  G +IYL LYVDDMLI SKN   I KLK QLS  FEMKDLG  +KILGM+I RDRK
Sbjct: 1507 RKLSDGSHIYLLLYVDDMLIASKNMSEINKLKSQLSGEFEMKDLGAAKKILGMDIHRDRK 1566

Query: 737  RGRLFLTQKEYLRKMFQKLNFDSDAKVVNTPLAPHFKLSAWMSP*MLEDRE 889
             G+L ++QK Y+ K+ Q+   D  AK V+TPLAPHFKLSA +SP   E+++
Sbjct: 1567 AGKLRVSQKNYIEKVLQRFGMDK-AKTVSTPLAPHFKLSAELSPQSDEEKQ 1616



 Score =  130 bits (327), Expect(2) = e-116
 Identities = 60/92 (65%), Positives = 77/92 (83%)
 Frame = +3

Query: 891  MSYVPYANAVGSLMYAMVCTRPNLSQAVSMVSRYMHDPGRGHWEAVKWILRYIKGTVDMG 1070
            MS++PY++AVGS+MYAMVCTRP++S AVS+VSRYM  PG+ HW+AVKWILRY++G+ D+ 
Sbjct: 1618 MSHIPYSSAVGSVMYAMVCTRPDISHAVSVVSRYMSCPGKEHWQAVKWILRYLRGSADLC 1677

Query: 1071 LVYEKANDGKQECVGYVDSDYAGDLDKHRSTT 1166
            LVY++ +D      GYVDSDYAGDLDK RS T
Sbjct: 1678 LVYDQ-SDCTSSVTGYVDSDYAGDLDKRRSLT 1708


>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1032

 Score =  303 bits (776), Expect(2) = e-112
 Identities = 156/292 (53%), Positives = 204/292 (69%), Gaps = 2/292 (0%)
 Frame = +2

Query: 20   TEAELSSESNRWCNAMADEMISLHKNDIWELTKLPKGKKAIGCK*VYAKKEGSPK-EGVR 196
            +EA    +S +W  AM +E+ SLHKN+ W LTKLPKGK+ + CK +Y KK+G P  E  R
Sbjct: 515  SEAVSCVDSAKWLVAMNEEIESLHKNNTWNLTKLPKGKRPLRCKWIYKKKDGIPGVEDPR 574

Query: 197  FKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXXXXXXXKTAFLHDD-S 373
             KARLV KG+ Q EG+D+NE FSPVV+H+SIRI                 KTAFLH +  
Sbjct: 575  CKARLVVKGFYQKEGIDFNEIFSPVVRHTSIRILLAFVALFDLELEQLDVKTAFLHGELE 634

Query: 374  DEIYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFMFGKGYTRSPYDPCVY 553
            +EIYM QP GF V  KE  VC+LKKSLYG +Q+ RQWYK+FDSFM G+GY+RS YD C+Y
Sbjct: 635  EEIYMDQPEGFVVPSKEHLVCQLKKSLYGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIY 694

Query: 554  LHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEMKDLGEVRKILGMEIERDR 733
              + P G +IYL LYVDDMLI S++   I+KLK QL++ FEMK+LG  +KILGMEI RDR
Sbjct: 695  FQQFPDGTFIYLLLYVDDMLIASRDKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDR 754

Query: 734  KRGRLFLTQKEYLRKMFQKLNFDSDAKVVNTPLAPHFKLSAWMSP*MLEDRE 889
            + G+LFL+Q++Y+ ++  + N  ++ K V+TPLA HFKLS+ + P   E+ E
Sbjct: 755  QVGKLFLSQQKYIERLLDRFNM-NNCKPVSTPLAAHFKLSSDLCPQTKEEME 805



 Score =  134 bits (336), Expect(2) = e-112
 Identities = 60/90 (66%), Positives = 74/90 (82%)
 Frame = +3

Query: 891  MSYVPYANAVGSLMYAMVCTRPNLSQAVSMVSRYMHDPGRGHWEAVKWILRYIKGTVDMG 1070
            MS+VPYA+AVGSLMYAMVCTRP+L+ AVSMVSRYMH+PG+ HW AVKWI RY+KGT ++G
Sbjct: 807  MSHVPYASAVGSLMYAMVCTRPDLAYAVSMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIG 866

Query: 1071 LVYEKANDGKQECVGYVDSDYAGDLDKHRS 1160
            LV+++         G+VDSDY GDLD+ RS
Sbjct: 867  LVFDRNKATTNNVAGFVDSDYGGDLDRRRS 896


>gb|PHT40240.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Capsicum
            baccatum]
          Length = 1526

 Score =  298 bits (763), Expect(2) = e-112
 Identities = 153/285 (53%), Positives = 193/285 (67%), Gaps = 2/285 (0%)
 Frame = +2

Query: 20   TEAELSSESNRWCNAMADEMISLHKNDIWELTKLPKGKKAIGCK*VYAKKEGSPK-EGVR 196
            +EA    +S +W  AM +E+ SL KN+ W+L  LP+GK+ I CK ++ +KEG P  E  R
Sbjct: 475  SEAISGDDSAKWTAAMQEEVESLLKNETWDLVMLPEGKRVISCKWIFKRKEGIPGVENAR 534

Query: 197  FKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXXXXXXXKTAFLHDD-S 373
            +KAR V +G+ Q EG+D+NE FSPVV+HSSIR+                 KTAFLH +  
Sbjct: 535  YKARFVVRGFDQQEGIDFNEVFSPVVRHSSIRVLLALVALYDLELEQLDVKTAFLHGNLE 594

Query: 374  DEIYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFMFGKGYTRSPYDPCVY 553
            +EIY+ QP GF V GKE  VC+LKKSLYG +QS RQWYKRFDSFM G GY+RS YD CVY
Sbjct: 595  EEIYIQQPEGFVVPGKENHVCRLKKSLYGLKQSPRQWYKRFDSFMTGHGYSRSSYDNCVY 654

Query: 554  LHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEMKDLGEVRKILGMEIERDR 733
              KL  G  +YL LYVDDMLI +++   + KLK QL+  F+MKDLG  +KILGMEI RDR
Sbjct: 655  FQKLSDGSLVYLLLYVDDMLIAARDKTLVDKLKVQLNSEFDMKDLGPAKKILGMEINRDR 714

Query: 734  KRGRLFLTQKEYLRKMFQKLNFDSDAKVVNTPLAPHFKLSAWMSP 868
            + G+LFL+QK+Y+ KM  +     D K VNTPLA HFKLS+   P
Sbjct: 715  QAGKLFLSQKKYVMKMLDRFGM-RDCKAVNTPLAAHFKLSSDQCP 758



 Score =  135 bits (341), Expect(2) = e-112
 Identities = 60/90 (66%), Positives = 77/90 (85%)
 Frame = +3

Query: 891  MSYVPYANAVGSLMYAMVCTRPNLSQAVSMVSRYMHDPGRGHWEAVKWILRYIKGTVDMG 1070
            MS+VPY+NAVGSLMYAMVCTRP+L+ AVS+VSR+MH+PG+ HWE+VKWILRY+KG+ D+G
Sbjct: 767  MSHVPYSNAVGSLMYAMVCTRPDLAYAVSVVSRFMHNPGKQHWESVKWILRYLKGSPDIG 826

Query: 1071 LVYEKANDGKQECVGYVDSDYAGDLDKHRS 1160
            LV+++        VGYVD+DY GDLD+ RS
Sbjct: 827  LVFDRQRSDPGGVVGYVDADYGGDLDRRRS 856


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
 gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  312 bits (800), Expect(2) = e-111
 Identities = 166/295 (56%), Positives = 205/295 (69%), Gaps = 2/295 (0%)
 Frame = +2

Query: 23   EAELSSESNRWCNAMADEMISLHKNDIWELTKLPKGKKAIGCK*VYAKKEG-SPKEGVRF 199
            EA LSS+S +W  AM DEM SLHKN  W+L   P G+K I CK V+ KKEG SP EGV++
Sbjct: 796  EAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKY 855

Query: 200  KARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXXXXXXXKTAFLHDD-SD 376
            KAR+VA+G+ Q EGVDYNE FSPVV+H+SIR+                 KTAFLH +  +
Sbjct: 856  KARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEE 915

Query: 377  EIYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFMFGKGYTRSPYDPCVYL 556
            EIYMTQP GF+V GKE  VCKLKKSLYG +QS RQWYKRFDS+M   GYTRS YD CVY 
Sbjct: 916  EIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYY 975

Query: 557  HKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEMKDLGEVRKILGMEIERDRK 736
            ++L    +IYL LYVDDMLI +K    I KLKG LS  FEMKDLG  RKILGMEI RDR+
Sbjct: 976  NRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRE 1035

Query: 737  RGRLFLTQKEYLRKMFQKLNFDSDAKVVNTPLAPHFKLSAWMSP*MLEDREYVLR 901
            R +LFL+Q+ Y++K+  +    S +K ++TP A +  L+A  +P   E++EY+ R
Sbjct: 1036 RRKLFLSQRSYIQKVLARFGM-SSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSR 1089



 Score =  120 bits (300), Expect(2) = e-111
 Identities = 60/94 (63%), Positives = 73/94 (77%), Gaps = 2/94 (2%)
 Frame = +3

Query: 891  MSYVPYANAVGSLMYAMVCTRPNLSQAVSMVSRYMHDPGRGHWEAVKWILRYIKGTVDMG 1070
            MS VPYA+AVGSLMYAMVCTRP+L+ AVS+VSR+M  PGR HW+AVK I RY++GT D+G
Sbjct: 1087 MSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVG 1146

Query: 1071 LVYEKANDGKQECV--GYVDSDYAGDLDKHRSTT 1166
            L+Y     G  +C+  GY DSDYAGD+D  RS T
Sbjct: 1147 LIY----GGDTQCLVTGYSDSDYAGDVDTRRSMT 1176


>gb|KYP53356.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 503

 Score =  295 bits (756), Expect(2) = e-110
 Identities = 151/277 (54%), Positives = 196/277 (70%), Gaps = 2/277 (0%)
 Frame = +2

Query: 65  MADEMISLHKNDIWELTKLPKGKKAIGCK*VYAKKEGSPK-EGVRFKARLVAKGYAQLEG 241
           M +E+ SLHKN+ W LTKLPKGK+ + CK +Y KK+G P  E  R KARLV KG+ Q EG
Sbjct: 1   MNEEIESLHKNNTWNLTKLPKGKRPLRCKWIYKKKDGIPGVEDPRCKARLVVKGFYQKEG 60

Query: 242 VDYNEAFSPVVKHSSIRIXXXXXXXXXXXXXXXXXKTAFLHDD-SDEIYMTQPTGFRVTG 418
           +D+NE FSPVV+H+SIRI                 KTAFLH +  +EIYM QP GF V  
Sbjct: 61  IDFNEIFSPVVRHTSIRILLAFVALFDLELEQLDVKTAFLHGELEEEIYMDQPEGFVVPS 120

Query: 419 KEESVCKLKKSLYGQRQSLRQWYKRFDSFMFGKGYTRSPYDPCVYLHKLPGGEYIYL*LY 598
           KE  VC+LKKSLYG +Q+ RQWYK+FDSFM G+GY+RS YD C+Y  + P G +IYL LY
Sbjct: 121 KEHLVCQLKKSLYGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLY 180

Query: 599 VDDMLIVSKNSVAIAKLKGQLSD*FEMKDLGEVRKILGMEIERDRKRGRLFLTQKEYLRK 778
           VDDMLI S++   I+KLK QL++ FEMK+LG  +KILGMEI RDR+ G+LFL+Q++Y+ +
Sbjct: 181 VDDMLIASRDKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIER 240

Query: 779 MFQKLNFDSDAKVVNTPLAPHFKLSAWMSP*MLEDRE 889
           +  + N  ++ K V+TPLA HFKLS+ + P   E+ E
Sbjct: 241 LLDRFNM-NNCKPVSTPLAAHFKLSSDLCPQTKEEME 276



 Score =  134 bits (336), Expect(2) = e-110
 Identities = 60/90 (66%), Positives = 74/90 (82%)
 Frame = +3

Query: 891  MSYVPYANAVGSLMYAMVCTRPNLSQAVSMVSRYMHDPGRGHWEAVKWILRYIKGTVDMG 1070
            MS+VPYA+AVGSLMYAMVCTRP+L+ AVSMVSRYMH+PG+ HW AVKWI RY+KGT ++G
Sbjct: 278  MSHVPYASAVGSLMYAMVCTRPDLAYAVSMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIG 337

Query: 1071 LVYEKANDGKQECVGYVDSDYAGDLDKHRS 1160
            LV+++         G+VDSDY GDLD+ RS
Sbjct: 338  LVFDRNKATTNNVAGFVDSDYGGDLDRRRS 367


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  305 bits (780), Expect(2) = e-109
 Identities = 166/296 (56%), Positives = 202/296 (68%), Gaps = 2/296 (0%)
 Frame = +2

Query: 20   TEAELSSESNRWCNAMADEMISLHKNDIWELTKLPKGKKAIGCK*VYAKKEG-SPKEGVR 196
            +EA +S + NRW  AM DEM SL KN  WEL KLPK KK I CK ++ +KEG SP +  R
Sbjct: 792  SEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEAR 851

Query: 197  FKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXXXXXXXKTAFLHDDSD 376
            +KARLVAKGY+Q+ G+D+N+ FSPVVKHSSIR                  KTAFLH + +
Sbjct: 852  YKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELE 911

Query: 377  E-IYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFMFGKGYTRSPYDPCVY 553
            E IYM QP GF V GKE  VC+LKKSLYG +QS RQWYKRFDSFM  + +  S YD CVY
Sbjct: 912  EDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRISNYDSCVY 971

Query: 554  LHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEMKDLGEVRKILGMEIERDR 733
            L K+  G  IYL LYVDDMLI +K+   I KLK QLS  FEMKDLG  +KILGMEI R+R
Sbjct: 972  L-KVVDGSVIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRER 1030

Query: 734  KRGRLFLTQKEYLRKMFQKLNFDSDAKVVNTPLAPHFKLSAWMSP*MLEDREYVLR 901
              G+L+L+QK Y+ K+ ++ N   DAK V+TPLA HF+LS+ + P    D EY+ R
Sbjct: 1031 HSGKLYLSQKGYIEKVLRRFNM-HDAKPVSTPLAAHFRLSSDLCPLSDYDIEYMSR 1085



 Score =  121 bits (303), Expect(2) = e-109
 Identities = 57/92 (61%), Positives = 74/92 (80%)
 Frame = +3

Query: 891  MSYVPYANAVGSLMYAMVCTRPNLSQAVSMVSRYMHDPGRGHWEAVKWILRYIKGTVDMG 1070
            MS VPY++AVGSLMYAMVC RP+LS A+S+V+RYM +PG+ HW+AV+WI RY++GT    
Sbjct: 1083 MSRVPYSSAVGSLMYAMVCCRPDLSHALSVVNRYMANPGKEHWKAVQWIFRYLRGTSSAC 1142

Query: 1071 LVYEKANDGKQECVGYVDSDYAGDLDKHRSTT 1166
            L +E++ DG    VGYVDSD+AGDLD+ RS T
Sbjct: 1143 LQFERSRDG---LVGYVDSDFAGDLDRRRSIT 1171


>gb|ASR75372.1| retrotransposon protein [Oryza nivara]
          Length = 1170

 Score =  306 bits (783), Expect(2) = e-109
 Identities = 166/297 (55%), Positives = 200/297 (67%), Gaps = 3/297 (1%)
 Frame = +2

Query: 20   TEAELSSESNRWCNAMADEMISLHKNDIWELTKLPKGKKAIGCK*VYAKKEG--SPKEGV 193
            TEA +S +  +W +AM +EM SL KN  WEL  LPK KK + CK ++ +K G  SP E  
Sbjct: 729  TEAVVSGDREKWISAMQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKEKGGFISPSEPP 788

Query: 194  RFKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXXXXXXXKTAFLHDD- 370
            RFKARLVAKG++Q+ GVDYN+ FSPVVKHSSIR                  KTAFLH + 
Sbjct: 789  RFKARLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGEL 848

Query: 371  SDEIYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFMFGKGYTRSPYDPCV 550
             +EIYM QP GF V GKE+ VCKLK+SLYG +QS RQWYKRFDSFM   G+ RS +D CV
Sbjct: 849  EEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCV 908

Query: 551  YLHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEMKDLGEVRKILGMEIERD 730
            Y+ K   G  IYL LYVDDMLI +K+   I  LK QLS  F+MKDLG  +KILGMEI RD
Sbjct: 909  YI-KFVNGSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRD 967

Query: 731  RKRGRLFLTQKEYLRKMFQKLNFDSDAKVVNTPLAPHFKLSAWMSP*MLEDREYVLR 901
            R  G LFL+Q+ Y++K+ Q+ N   DAK V+TP+APHFKLSA       ED EY+ R
Sbjct: 968  RNSGLLFLSQQSYIKKVLQRFNM-HDAKPVSTPIAPHFKLSALQCASTDEDVEYMSR 1023



 Score =  120 bits (300), Expect(2) = e-109
 Identities = 57/92 (61%), Positives = 73/92 (79%)
 Frame = +3

Query: 891  MSYVPYANAVGSLMYAMVCTRPNLSQAVSMVSRYMHDPGRGHWEAVKWILRYIKGTVDMG 1070
            MS VPY++AVGSLMYAMVC+RP+LS A+S+VSRYM +PG+ HW+AV+WI RY++GT D  
Sbjct: 1021 MSRVPYSSAVGSLMYAMVCSRPDLSHAMSLVSRYMANPGKEHWKAVQWIFRYLRGTADAC 1080

Query: 1071 LVYEKANDGKQECVGYVDSDYAGDLDKHRSTT 1166
            L + + + G    VGYVDSD+A DLDK RS T
Sbjct: 1081 LKFGRTDKG---LVGYVDSDFAADLDKRRSLT 1109


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  304 bits (779), Expect(2) = e-109
 Identities = 165/296 (55%), Positives = 200/296 (67%), Gaps = 2/296 (0%)
 Frame = +2

Query: 20   TEAELSSESNRWCNAMADEMISLHKNDIWELTKLPKGKKAIGCK*VYAKKEG-SPKEGVR 196
            TEA +S +  +W +AM +EM SL KN  WEL  LPK KK + CK ++ +KEG SP E  R
Sbjct: 810  TEAVVSGDREKWISAMQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPR 869

Query: 197  FKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXXXXXXXKTAFLHDD-S 373
            FKARLVAKG++Q+ GVDYN+ FSPVVKHSSIR                  KTAFLH +  
Sbjct: 870  FKARLVAKGFSQIVGVDYNDVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELE 929

Query: 374  DEIYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFMFGKGYTRSPYDPCVY 553
            +EIYM QP GF V GKE+ VCKLK+SLYG +QS RQWYKRFDSFM   G+ RS +D CVY
Sbjct: 930  EEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVY 989

Query: 554  LHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEMKDLGEVRKILGMEIERDR 733
            + K   G  IYL LYVDD+LI +K+   I  LK QLS  F+MKDLG  +KILGMEI RD+
Sbjct: 990  I-KFVNGSPIYLLLYVDDILIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDK 1048

Query: 734  KRGRLFLTQKEYLRKMFQKLNFDSDAKVVNTPLAPHFKLSAWMSP*MLEDREYVLR 901
              G LFL+Q+ Y++K+ Q  N   DAK V+TP+APHFKLSA       ED EY+ R
Sbjct: 1049 NSGLLFLSQQSYIKKVLQCFNM-HDAKPVSTPIAPHFKLSALQCANTDEDVEYMSR 1103



 Score =  119 bits (299), Expect(2) = e-109
 Identities = 56/92 (60%), Positives = 73/92 (79%)
 Frame = +3

Query: 891  MSYVPYANAVGSLMYAMVCTRPNLSQAVSMVSRYMHDPGRGHWEAVKWILRYIKGTVDMG 1070
            MS VPY++AVGSLMYAMVC+RP+LS A+S+VSRYM +PG+ HW+AV+WI RY++GT D  
Sbjct: 1101 MSRVPYSSAVGSLMYAMVCSRPDLSHAMSLVSRYMTNPGKEHWKAVQWIFRYLRGTADAC 1160

Query: 1071 LVYEKANDGKQECVGYVDSDYAGDLDKHRSTT 1166
            L + + + G    +GYVDSD+A DLDK RS T
Sbjct: 1161 LKFGRTDKG---LIGYVDSDFAADLDKRRSLT 1189


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  305 bits (780), Expect(2) = e-108
 Identities = 166/296 (56%), Positives = 203/296 (68%), Gaps = 2/296 (0%)
 Frame = +2

Query: 20   TEAELSSESNRWCNAMADEMISLHKNDIWELTKLPKGKKAIGCK*VYAKKEG-SPKEGVR 196
            ++A +S + NRW  AM DEM SL KN  WEL KLPK KK I CK ++ +KEG SP +  R
Sbjct: 729  SDAIVSDDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEAR 788

Query: 197  FKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXXXXXXXKTAFLHDDSD 376
            +KARLVAKGY+Q+ G+D+N+ FSPVVKHSSIR                  KTAFLH + +
Sbjct: 789  YKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELE 848

Query: 377  E-IYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFMFGKGYTRSPYDPCVY 553
            E IYM QP GF V GKE  VC+LKKSLYG +QS RQWYKRFDSFM  + + RS YD CVY
Sbjct: 849  EDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVY 908

Query: 554  LHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEMKDLGEVRKILGMEIERDR 733
            L K+  G  IYL LYVDDMLI +K+   IAKLK QLS  FEMKDLG  +KILGMEI R+R
Sbjct: 909  L-KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRER 967

Query: 734  KRGRLFLTQKEYLRKMFQKLNFDSDAKVVNTPLAPHFKLSAWMSP*MLEDREYVLR 901
              G+L+L+QK Y+ K+  + N   DAK+V+T LA HF+LS+ + P    D EY+ R
Sbjct: 968  HSGKLYLSQKCYIEKVLHRFNM-HDAKLVSTLLAAHFRLSSDLCPQSAYDIEYMSR 1022



 Score =  118 bits (296), Expect(2) = e-108
 Identities = 56/92 (60%), Positives = 74/92 (80%)
 Frame = +3

Query: 891  MSYVPYANAVGSLMYAMVCTRPNLSQAVSMVSRYMHDPGRGHWEAVKWILRYIKGTVDMG 1070
            MS VPY++AV SLMYAMVC+RP+LS A+S+VSRYM +PG+ HW+AV+WI RY++GT    
Sbjct: 1020 MSRVPYSSAVSSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSAC 1079

Query: 1071 LVYEKANDGKQECVGYVDSDYAGDLDKHRSTT 1166
            L + +++DG    VGYVDSD+AGDLD+ RS T
Sbjct: 1080 LQFGRSSDG---LVGYVDSDFAGDLDRRRSLT 1108


>ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024343 [Solanum pennellii]
          Length = 1892

 Score =  291 bits (746), Expect(2) = e-108
 Identities = 157/293 (53%), Positives = 196/293 (66%), Gaps = 2/293 (0%)
 Frame = +2

Query: 23   EAELSSESNRWCNAMADEMISLHKNDIWELTKLPKGKKAIGCK*VYAKKEGSPK-EGVRF 199
            EA    ++ +W  AM +EM SLH+N+ W L K PKG + +GCK VY KKEG P+ E  RF
Sbjct: 1383 EATSCKDAAQWQLAMMEEMESLHRNETWVLVKRPKGMRTVGCKWVYKKKEGIPEVEAARF 1442

Query: 200  KARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXXXXXXXKTAFLHDDSDE 379
            KARLVAKG++Q EG+DYNE FSPVVKHSSIR+                 KTAFLH D +E
Sbjct: 1443 KARLVAKGFSQKEGIDYNEIFSPVVKHSSIRVLLALVAQFDLELQQLDVKTAFLHGDLEE 1502

Query: 380  -IYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFMFGKGYTRSPYDPCVYL 556
             IYM QP GF   GKE+ VC+LKKSLYG +QS RQWYKRFD+FM   G++RS +D CVY 
Sbjct: 1503 TIYMDQPEGFLAEGKEDHVCQLKKSLYGLKQSPRQWYKRFDAFMTTHGFSRSAFDSCVYH 1562

Query: 557  HKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEMKDLGEVRKILGMEIERDRK 736
             K+ G   IYL LYVDDMLI + N   I  LK  LS  F+MKDLG  +KILGMEI R+  
Sbjct: 1563 KKMSGNSMIYLLLYVDDMLIAANNITEINILKKLLSKEFDMKDLGVAKKILGMEISRE-- 1620

Query: 737  RGRLFLTQKEYLRKMFQKLNFDSDAKVVNTPLAPHFKLSAWMSP*MLEDREYV 895
             G + L+QK Y+RK+ ++ N D  +K V+TPLA HFKLS    P  +++ E++
Sbjct: 1621 NGVVHLSQKRYIRKVLERFNMDM-SKPVSTPLASHFKLSELQMPQSMDEVEHM 1672



 Score =  131 bits (329), Expect(2) = e-108
 Identities = 61/92 (66%), Positives = 77/92 (83%)
 Frame = +3

Query: 891  MSYVPYANAVGSLMYAMVCTRPNLSQAVSMVSRYMHDPGRGHWEAVKWILRYIKGTVDMG 1070
            MS VPYA+AVGS+MYAMVCTRP+++Q+VS+VS+YM +PG+ HWEAVKWILRY+KG  D+G
Sbjct: 1672 MSKVPYASAVGSIMYAMVCTRPDIAQSVSVVSKYMANPGKRHWEAVKWILRYLKGAPDVG 1731

Query: 1071 LVYEKANDGKQECVGYVDSDYAGDLDKHRSTT 1166
            L + K+       +GYVDSDYAGDLD+ RSTT
Sbjct: 1732 LTFRKSEG--ISILGYVDSDYAGDLDRRRSTT 1761


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|AAU89150.1| integrase core domain containing protein [Oryza sativa Japonica
            Group]
 gb|ABF98081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1322

 Score =  305 bits (780), Expect(2) = e-108
 Identities = 164/296 (55%), Positives = 199/296 (67%), Gaps = 2/296 (0%)
 Frame = +2

Query: 20   TEAELSSESNRWCNAMADEMISLHKNDIWELTKLPKGKKAIGCK*VYAKKEG-SPKEGVR 196
            TEA +S +  +W +A+ +EM SL KN  WEL  LPK KK + CK ++ +KEG SP E  R
Sbjct: 810  TEAVVSGDREKWISAIQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPR 869

Query: 197  FKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXXXXXXXKTAFLHDD-S 373
            FK RLVAKG++Q+ GVDYN+ FSPVVKHSSIR                  KT FLH +  
Sbjct: 870  FKVRLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVTMHDLELEQLDVKTTFLHGELE 929

Query: 374  DEIYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFMFGKGYTRSPYDPCVY 553
            +EIYM QP GF V GKE+ VCKLK+SLYG +QS RQWYKRFDSFM   G+ RS +D CVY
Sbjct: 930  EEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVY 989

Query: 554  LHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEMKDLGEVRKILGMEIERDR 733
            + K   G  IYL LYVDDMLI +K+   I  LK QLS  F+MKDLG  +KILGMEI RDR
Sbjct: 990  I-KFVNGSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDR 1048

Query: 734  KRGRLFLTQKEYLRKMFQKLNFDSDAKVVNTPLAPHFKLSAWMSP*MLEDREYVLR 901
              G LFL+Q+ Y++K+ Q+ N   DAK V+TP+APHFKLSA       ED EY+ R
Sbjct: 1049 NSGLLFLSQQSYIKKVLQRFNM-HDAKPVSTPIAPHFKLSALQCASTDEDVEYMSR 1103



 Score =  116 bits (291), Expect(2) = e-108
 Identities = 56/92 (60%), Positives = 72/92 (78%)
 Frame = +3

Query: 891  MSYVPYANAVGSLMYAMVCTRPNLSQAVSMVSRYMHDPGRGHWEAVKWILRYIKGTVDMG 1070
            MS VPY++AVGSLMYAMVC+ P+LS A+S+VSRYM +PG+ HW+AV+WI RY++GT D  
Sbjct: 1101 MSRVPYSSAVGSLMYAMVCSWPDLSHAMSLVSRYMANPGKEHWKAVQWIFRYLRGTADAC 1160

Query: 1071 LVYEKANDGKQECVGYVDSDYAGDLDKHRSTT 1166
            L + + + G    VGYVDSD+A DLDK RS T
Sbjct: 1161 LKFGRIDKG---LVGYVDSDFAADLDKRRSLT 1189


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2340

 Score =  301 bits (771), Expect(2) = e-107
 Identities = 165/296 (55%), Positives = 201/296 (67%), Gaps = 2/296 (0%)
 Frame = +2

Query: 20   TEAELSSESNRWCNAMADEMISLHKNDIWELTKLPKGKKAIGCK*VYAKKEG-SPKEGVR 196
            +EA +S + NRW  AM DEM SL KN  WEL KLPK KK I CK ++ +KEG S  +  R
Sbjct: 1027 SEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEAR 1086

Query: 197  FKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXXXXXXXKTAFLHDDSD 376
            +KARL+AKGY+Q+ G+D+N+ FSPVVKHSSIR                  KTAFLH + +
Sbjct: 1087 YKARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELE 1146

Query: 377  E-IYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFMFGKGYTRSPYDPCVY 553
            E IYM QP GF V GKE  VC+LKKSLYG +QS RQWYKRFDSFM  + + RS YD CVY
Sbjct: 1147 EDIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVY 1206

Query: 554  LHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEMKDLGEVRKILGMEIERDR 733
            L K+  G  IYL LYVDDMLI +K+   IAKLK QLS  FEMKDLG  +KILGMEI R R
Sbjct: 1207 L-KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKR 1265

Query: 734  KRGRLFLTQKEYLRKMFQKLNFDSDAKVVNTPLAPHFKLSAWMSP*MLEDREYVLR 901
               +L+L+QK Y+ K+ ++ N   DAK V+TPLA HF+LS+ + P    D EY+ R
Sbjct: 1266 HSFKLYLSQKGYIEKVLRRFNM-HDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSR 1320



 Score =  118 bits (295), Expect(2) = e-107
 Identities = 56/90 (62%), Positives = 73/90 (81%)
 Frame = +3

Query: 891  MSYVPYANAVGSLMYAMVCTRPNLSQAVSMVSRYMHDPGRGHWEAVKWILRYIKGTVDMG 1070
            MS VPY++AVGSLMYAMVC+RP+LS A+S+VSRYM +PG+ HW+AV+WI RY++GT    
Sbjct: 1318 MSRVPYSSAVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSAC 1377

Query: 1071 LVYEKANDGKQECVGYVDSDYAGDLDKHRS 1160
            L + ++ DG    VGYVDSD+AGDLD+ RS
Sbjct: 1378 LQFGRSRDG---LVGYVDSDFAGDLDRGRS 1404


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA92739.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1373

 Score =  296 bits (759), Expect(2) = e-105
 Identities = 161/295 (54%), Positives = 197/295 (66%), Gaps = 2/295 (0%)
 Frame = +2

Query: 23   EAELSSESNRWCNAMADEMISLHKNDIWELTKLPKGKKAIGCK*VYAKKEG-SPKEGVRF 199
            EA    +S  W +AM +EM SL KN  WE+  LPK KK I CK ++ +KEG S  E  ++
Sbjct: 822  EAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKY 881

Query: 200  KARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXXXXXXXKTAFLHDDSDE 379
            KARLVA+GY+Q+ GVDYN+ FSPVVKHSSIR                  KTAFLH + +E
Sbjct: 882  KARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEE 941

Query: 380  -IYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFMFGKGYTRSPYDPCVYL 556
             IYM QP GF V GKE+ VCKLK+SLYG +QS RQW KRFDSFM    + RS YD CVY+
Sbjct: 942  DIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYI 1001

Query: 557  HKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEMKDLGEVRKILGMEIERDRK 736
             K   G  IYL LYVDDMLI +K+ + I KLK  LS  F+MKDLG  +KILGMEI RDRK
Sbjct: 1002 -KHVNGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRK 1060

Query: 737  RGRLFLTQKEYLRKMFQKLNFDSDAKVVNTPLAPHFKLSAWMSP*MLEDREYVLR 901
             G LFL+Q  Y++K+ Q+ N   +AK V+TP+APHFKLSA   P +  + EY+ R
Sbjct: 1061 SGLLFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSR 1114



 Score =  116 bits (290), Expect(2) = e-105
 Identities = 55/92 (59%), Positives = 71/92 (77%)
 Frame = +3

Query: 891  MSYVPYANAVGSLMYAMVCTRPNLSQAVSMVSRYMHDPGRGHWEAVKWILRYIKGTVDMG 1070
            MS VPY++AVGSLMYAMVC+RP+LS A+S+VSRYM +PG+ HW AV+WI RY++GT    
Sbjct: 1112 MSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSC 1171

Query: 1071 LVYEKANDGKQECVGYVDSDYAGDLDKHRSTT 1166
            L + + + G    +GYVDSDYA DLD+ RS T
Sbjct: 1172 LKFGRTDKG---LIGYVDSDYAADLDRRRSLT 1200


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  296 bits (759), Expect(2) = e-105
 Identities = 161/295 (54%), Positives = 197/295 (66%), Gaps = 2/295 (0%)
 Frame = +2

Query: 23   EAELSSESNRWCNAMADEMISLHKNDIWELTKLPKGKKAIGCK*VYAKKEG-SPKEGVRF 199
            EA    +S  W +AM +EM SL KN  WE+  LPK KK I CK ++ +KEG S  E  ++
Sbjct: 822  EAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKY 881

Query: 200  KARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXXXXXXXKTAFLHDDSDE 379
            KARLVA+GY+Q+ GVDYN+ FSPVVKHSSIR                  KTAFLH + +E
Sbjct: 882  KARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEE 941

Query: 380  -IYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFMFGKGYTRSPYDPCVYL 556
             IYM QP GF V GKE+ VCKLK+SLYG +QS RQW KRFDSFM    + RS YD CVY+
Sbjct: 942  DIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYI 1001

Query: 557  HKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEMKDLGEVRKILGMEIERDRK 736
             K   G  IYL LYVDDMLI +K+ + I KLK  LS  F+MKDLG  +KILGMEI RDRK
Sbjct: 1002 -KHVNGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRK 1060

Query: 737  RGRLFLTQKEYLRKMFQKLNFDSDAKVVNTPLAPHFKLSAWMSP*MLEDREYVLR 901
             G LFL+Q  Y++K+ Q+ N   +AK V+TP+APHFKLSA   P +  + EY+ R
Sbjct: 1061 SGLLFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSR 1114



 Score =  116 bits (290), Expect(2) = e-105
 Identities = 55/92 (59%), Positives = 71/92 (77%)
 Frame = +3

Query: 891  MSYVPYANAVGSLMYAMVCTRPNLSQAVSMVSRYMHDPGRGHWEAVKWILRYIKGTVDMG 1070
            MS VPY++AVGSLMYAMVC+RP+LS A+S+VSRYM +PG+ HW AV+WI RY++GT    
Sbjct: 1112 MSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSC 1171

Query: 1071 LVYEKANDGKQECVGYVDSDYAGDLDKHRSTT 1166
            L + + + G    +GYVDSDYA DLD+ RS T
Sbjct: 1172 LKFGRTDKG---LIGYVDSDYAADLDRRRSLT 1200


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  301 bits (771), Expect(2) = e-105
 Identities = 165/296 (55%), Positives = 202/296 (68%), Gaps = 2/296 (0%)
 Frame = +2

Query: 20   TEAELSSESNRWCNAMADEMISLHKNDIWELTKLPKGKKAIGCK*VYAKKEG-SPKEGVR 196
            +EA +S   NRW  AM DEM SL KN  WEL KLPK KK I CK ++ +K+G SP +  R
Sbjct: 699  SEAIVSDGCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKKGMSPSDEAR 758

Query: 197  FKARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXXXXXXXKTAFLHDDSD 376
            +KARLVAKGY+Q+ G+D+N+ FSPV+KHSSIR                  KTAFLH + +
Sbjct: 759  YKARLVAKGYSQIPGIDFNDVFSPVLKHSSIRTLLSIVAVHDYELEQMDVKTAFLHGELE 818

Query: 377  E-IYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFMFGKGYTRSPYDPCVY 553
            E IYM QP GF V GKE  V +LKKSLYG +QS RQWYKRFDSFMF + + RS YD CVY
Sbjct: 819  EDIYMEQPEGFVVPGKENLVYRLKKSLYGLKQSPRQWYKRFDSFMFSQKFRRSNYDSCVY 878

Query: 554  LHKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEMKDLGEVRKILGMEIERDR 733
            L K+  G  IYL LYVDDMLI +K+   I KLK QLS  FEMKDLG  +KILGMEI R+R
Sbjct: 879  L-KVVDGSSIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRER 937

Query: 734  KRGRLFLTQKEYLRKMFQKLNFDSDAKVVNTPLAPHFKLSAWMSP*MLEDREYVLR 901
              G+L+L+QK Y+ K+ ++ N   DAK V+TPLA HF+LS+ + P    D EY+ R
Sbjct: 938  HSGKLYLSQKGYIEKVLRRFNM-HDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSR 992



 Score =  111 bits (278), Expect(2) = e-105
 Identities = 53/92 (57%), Positives = 70/92 (76%)
 Frame = +3

Query: 891  MSYVPYANAVGSLMYAMVCTRPNLSQAVSMVSRYMHDPGRGHWEAVKWILRYIKGTVDMG 1070
            MS VPY + VGSLMYAMVC+R +LS A+S+VSRYM +PG+ HW+ V+WI +Y++GT    
Sbjct: 990  MSRVPYLSVVGSLMYAMVCSRLDLSHALSVVSRYMANPGKEHWKVVQWIFKYLRGTSSAC 1049

Query: 1071 LVYEKANDGKQECVGYVDSDYAGDLDKHRSTT 1166
            L + ++ DG    VGYVDSD+AGDLD+ RS T
Sbjct: 1050 LQFGRSRDG---LVGYVDSDFAGDLDRRRSLT 1078


>gb|PRQ16639.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 502

 Score =  281 bits (718), Expect(2) = e-104
 Identities = 146/270 (54%), Positives = 187/270 (69%), Gaps = 2/270 (0%)
 Frame = +2

Query: 65  MADEMISLHKNDIWELTKLPKGKKAIGCK*VYAKKEG-SPKEGVRFKARLVAKGYAQLEG 241
           M +EM SLHKN +WEL   PK +K +GCK V+ KKEG    + +++KARLVAKGY+Q EG
Sbjct: 1   MTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGVHDADAIKYKARLVAKGYSQKEG 60

Query: 242 VDYNEAFSPVVKHSSIRIXXXXXXXXXXXXXXXXXKTAFLHDDSDE-IYMTQPTGFRVTG 418
           VDY+E FSPVVKH+SIR+                 KTAFLH D +E IYM+QP GF  TG
Sbjct: 61  VDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETG 120

Query: 419 KEESVCKLKKSLYGQRQSLRQWYKRFDSFMFGKGYTRSPYDPCVYLHKLPGGEYIYL*LY 598
           KE+ VC+L+KSLYG +QS RQWYKRFD++M   GYTR  YD CVY H    GE I L LY
Sbjct: 121 KEDLVCRLRKSLYGLKQSPRQWYKRFDTYMLKIGYTRCLYDCCVYYHVFEDGEIILLLLY 180

Query: 599 VDDMLIVSKNSVAIAKLKGQLSD*FEMKDLGEVRKILGMEIERDRKRGRLFLTQKEYLRK 778
           VDDMLI  K+   I +LK +L   F+MKDLG  + ILG+EI RDRK G+++L+Q++Y+ +
Sbjct: 181 VDDMLIACKDMSKIEELKKKLGAEFDMKDLGAAQNILGIEIRRDRKAGKIWLSQEKYILR 240

Query: 779 MFQKLNFDSDAKVVNTPLAPHFKLSAWMSP 868
           + ++ N D  AKVV+ PLA H++LSA   P
Sbjct: 241 VLERFNMDG-AKVVSIPLAAHYQLSAKQRP 269



 Score =  129 bits (324), Expect(2) = e-104
 Identities = 63/96 (65%), Positives = 81/96 (84%), Gaps = 3/96 (3%)
 Frame = +3

Query: 888  SMSYVPYANAVGSLMYAMVCTRPNLSQAVSMVSRYMHDPGRGHWEAVKWILRYIKGTVDM 1067
            +M  VPYA+AVG LMYAM+CTRP+L+QA+S+VS+YM +PG+ HWEAVKWILRY+KGT  +
Sbjct: 277  AMKDVPYASAVGCLMYAMICTRPDLAQALSVVSKYMSNPGKPHWEAVKWILRYLKGTRQL 336

Query: 1068 GLVYEKANDGKQE--CV-GYVDSDYAGDLDKHRSTT 1166
            G+++E+    KQE  CV G+VD+DYAGDLDK RSTT
Sbjct: 337  GIMFER----KQEVACVAGFVDADYAGDLDKRRSTT 368


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  288 bits (737), Expect(2) = e-104
 Identities = 151/280 (53%), Positives = 192/280 (68%), Gaps = 2/280 (0%)
 Frame = +2

Query: 35   SSESNRWCNAMADEMISLHKNDIWELTKLPKGKKAIGCK*VYAKKEGSPKE-GVRFKARL 211
            S ES  W  AM +EM SLHKN +WEL   PK +K +GCK V+ KKEG  ++  + +KARL
Sbjct: 791  SVESAGWIGAMTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHEDDAITYKARL 850

Query: 212  VAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXXXXXXXKTAFLHDDSDE-IYM 388
            VAKGY+Q EGVDY+E FSPVVKH+SIR+                 KTAFLH D +E IYM
Sbjct: 851  VAKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYM 910

Query: 389  TQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFMFGKGYTRSPYDPCVYLHKLP 568
            +QP GF  TGKE  VC+LKKSLYG +QS RQWYK FD++M   GYTR  YD CVY H   
Sbjct: 911  SQPEGFVETGKENLVCRLKKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYDCCVYYHVFE 970

Query: 569  GGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEMKDLGEVRKILGMEIERDRKRGRL 748
             G+ I L LYVDDMLI  ++ + I KLK +L   F+MKDLG  +KILG+EI RDR  G++
Sbjct: 971  DGKVILLLLYVDDMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQKILGIEIRRDRNAGKI 1030

Query: 749  FLTQKEYLRKMFQKLNFDSDAKVVNTPLAPHFKLSAWMSP 868
            +L+Q++Y+ K+ ++ N  ++AKVV+ PLA HF+LSA   P
Sbjct: 1031 WLSQEKYIMKILERFNM-AEAKVVSIPLAAHFRLSAEQRP 1069



 Score =  121 bits (303), Expect(2) = e-104
 Identities = 54/91 (59%), Positives = 74/91 (81%)
 Frame = +3

Query: 891  MSYVPYANAVGSLMYAMVCTRPNLSQAVSMVSRYMHDPGRGHWEAVKWILRYIKGTVDMG 1070
            M  VPYA+AVG LMYAM+CTRP+L+QA+S+VS+YM +PG+ HWEAVKWI +Y+K T  +G
Sbjct: 1078 MKNVPYASAVGCLMYAMICTRPDLAQAMSVVSKYMSNPGKRHWEAVKWIFKYLKNTRQLG 1137

Query: 1071 LVYEKANDGKQECVGYVDSDYAGDLDKHRST 1163
            +++E+   G+    G+VDSD+AGDLD+ RST
Sbjct: 1138 IMFER-RQGEACVAGFVDSDFAGDLDRRRST 1167


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa]
          Length = 1335

 Score =  293 bits (749), Expect(2) = e-104
 Identities = 160/295 (54%), Positives = 195/295 (66%), Gaps = 2/295 (0%)
 Frame = +2

Query: 23   EAELSSESNRWCNAMADEMISLHKNDIWELTKLPKGKKAIGCK*VYAKKEG-SPKEGVRF 199
            EA    +S  W +AM +EM SL KN  WE+  LPK KK I CK ++ +KE  S  E  ++
Sbjct: 824  EAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKY 883

Query: 200  KARLVAKGYAQLEGVDYNEAFSPVVKHSSIRIXXXXXXXXXXXXXXXXXKTAFLHDDSDE 379
            KARLVA+GY+Q+ GVDYN+ FSPVVKHSSIR                  KTAFLH + +E
Sbjct: 884  KARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEE 943

Query: 380  -IYMTQPTGFRVTGKEESVCKLKKSLYGQRQSLRQWYKRFDSFMFGKGYTRSPYDPCVYL 556
             IYM QP GF V GKE+ VCKLK+SLYG +QS RQW KRFDSFM    + RS YD CVY+
Sbjct: 944  DIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYI 1003

Query: 557  HKLPGGEYIYL*LYVDDMLIVSKNSVAIAKLKGQLSD*FEMKDLGEVRKILGMEIERDRK 736
             K   G  IYL LYVDDMLI +K+ + I KLK  LS  F+MKDLG  +KILGMEI RDRK
Sbjct: 1004 -KHVNGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRK 1062

Query: 737  RGRLFLTQKEYLRKMFQKLNFDSDAKVVNTPLAPHFKLSAWMSP*MLEDREYVLR 901
             G LFL+Q  Y++K+ Q+ N   +AK V+TP+APHFKLSA   P    + EY+ R
Sbjct: 1063 SGLLFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSR 1116



 Score =  115 bits (287), Expect(2) = e-104
 Identities = 54/92 (58%), Positives = 71/92 (77%)
 Frame = +3

Query: 891  MSYVPYANAVGSLMYAMVCTRPNLSQAVSMVSRYMHDPGRGHWEAVKWILRYIKGTVDMG 1070
            MS VPY++AVGSLMYAMVC+RP+LS A+S+VSRYM +PG+ HW A++WI RY++GT    
Sbjct: 1114 MSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRALQWIFRYLRGTTYSC 1173

Query: 1071 LVYEKANDGKQECVGYVDSDYAGDLDKHRSTT 1166
            L + + + G    +GYVDSDYA DLD+ RS T
Sbjct: 1174 LKFGRTDKG---LIGYVDSDYAADLDRRRSLT 1202