BLASTX nr result
ID: Ophiopogon22_contig00018196
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon22_contig00018196
(4216 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AEX94498.1| RNA polymerase beta (chloroplast) [Ophiopogon jap... 1060 0.0
ref|YP_009432294.1| RNA polymerase beta (chloroplast) [Polygonat... 1055 0.0
gb|AEX94499.1| RNA polymerase beta (chloroplast) [Ruscus aculeatus] 1055 0.0
gb|AEX94497.1| RNA polymerase beta (chloroplast) [Liriope spicata] 1055 0.0
ref|YP_009183190.1| RNA polymerase beta (chloroplast) [Polygonat... 1053 0.0
ref|YP_009180099.1| RNA polymerase beta (chloroplast) [Polygonat... 1052 0.0
gb|AEX94494.1| RNA polymerase beta (chloroplast) [Beaucarnea hoo... 1049 0.0
ref|YP_009431209.1| RNA polymerase beta (chloroplast) [Maianthem... 1047 0.0
ref|YP_009335324.1| RNA polymerase beta (chloroplast) [Nolina at... 1046 0.0
gb|AEX94495.1| RNA polymerase beta (chloroplast) [Dasylirion whe... 1046 0.0
gb|AEX94478.1| RNA polymerase beta (chloroplast) [Asparagus aspa... 1045 0.0
gb|AEX94501.1| RNA polymerase beta (chloroplast) [Maianthemum st... 1044 0.0
ref|YP_009431123.1| RNA polymerase beta (chloroplast) [Asparagus... 1044 0.0
emb|CUS18626.1| RNA polymerase beta (plastid) [Asparagus officin... 1042 0.0
ref|YP_009432548.1| RNA polymerase beta (chloroplast) [Cordyline... 1042 0.0
ref|YP_009370012.1| RNA polymerase beta (chloroplast) [Asparagus... 1041 0.0
ref|YP_009431295.1| RNA polymerase beta (chloroplast) [Agapanthu... 1041 0.0
gb|AEX94500.1| RNA polymerase beta (chloroplast) [Sansevieria tr... 1041 0.0
gb|AEX94475.1| RNA polymerase beta (chloroplast) [Scadoxus cinna... 1040 0.0
gb|AEX94462.1| RNA polymerase beta (chloroplast) [Anemarrhena as... 1040 0.0
>gb|AEX94498.1| RNA polymerase beta (chloroplast) [Ophiopogon japonicus]
Length = 685
Score = 1060 bits (2742), Expect = 0.0
Identities = 526/541 (97%), Positives = 528/541 (97%)
Frame = -3
Query: 2918 YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 2739
YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE
Sbjct: 145 YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 204
Query: 2738 QLADLDLRIIIDNSLLEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 2559
QLADLDLRIIIDNSL+EWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP
Sbjct: 205 QLADLDLRIIIDNSLVEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 264
Query: 2558 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 2379
EWMV PIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV
Sbjct: 265 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 324
Query: 2378 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 2199
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 325 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 384
Query: 2198 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 2019
SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEP+VWEIL
Sbjct: 385 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPVVWEIL 444
Query: 2018 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 1839
QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 445 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 504
Query: 1838 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNLYNCG 1659
SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYN YNCG
Sbjct: 505 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPYNCG 564
Query: 1658 NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP 1479
NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP
Sbjct: 565 NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP 624
Query: 1478 IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT 1299
IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT
Sbjct: 625 IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT 684
Query: 1298 I 1296
I
Sbjct: 685 I 685
Score = 303 bits (775), Expect = 8e-85
Identities = 145/154 (94%), Positives = 146/154 (94%)
Frame = -3
Query: 4088 MIDRYKHQQLRIGLVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 3909
MIDRYKHQQLRIG VSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGPVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 3908 FGPIKSGICACGNYRVIGAEKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWYLK 3729
GPIKSGICACGNYRVIGAEKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61 SGPIKSGICACGNYRVIGAEKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 3728 RLPSYIANLLDKPLKELEGLVYCDV*FDRNLHFT 3627
RLPSYIANLLDKPLKELEGLVYCD LHF+
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDY-----LHFS 149
>ref|YP_009432294.1| RNA polymerase beta (chloroplast) [Polygonatum stenophyllum]
gb|ATB18549.1| RNA polymerase beta (chloroplast) [Polygonatum stenophyllum]
Length = 685
Score = 1055 bits (2728), Expect = 0.0
Identities = 525/541 (97%), Positives = 527/541 (97%)
Frame = -3
Query: 2918 YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 2739
YL+FSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE
Sbjct: 145 YLNFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 204
Query: 2738 QLADLDLRIIIDNSLLEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 2559
QLADLDLRIIIDNSL+EWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP
Sbjct: 205 QLADLDLRIIIDNSLVEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 264
Query: 2558 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 2379
EWMV PIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV
Sbjct: 265 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 324
Query: 2378 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 2199
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 325 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 384
Query: 2198 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 2019
SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL
Sbjct: 385 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 444
Query: 2018 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 1839
QEVMQGH VLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 445 QEVMQGHSVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 504
Query: 1838 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNLYNCG 1659
SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYN YNCG
Sbjct: 505 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPYNCG 564
Query: 1658 NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP 1479
NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP
Sbjct: 565 NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP 624
Query: 1478 IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT 1299
IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT
Sbjct: 625 IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT 684
Query: 1298 I 1296
I
Sbjct: 685 I 685
Score = 300 bits (768), Expect = 7e-84
Identities = 141/144 (97%), Positives = 141/144 (97%)
Frame = -3
Query: 4088 MIDRYKHQQLRIGLVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 3909
MIDRYKHQQLRIG VSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGPVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 3908 FGPIKSGICACGNYRVIGAEKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWYLK 3729
GPIKSGICACGNYRVIGAEKEDPKFCEECGV FVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61 SGPIKSGICACGNYRVIGAEKEDPKFCEECGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 3728 RLPSYIANLLDKPLKELEGLVYCD 3657
RLPSYIANLLDKPLKELEGLVYCD
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD 144
>gb|AEX94499.1| RNA polymerase beta (chloroplast) [Ruscus aculeatus]
Length = 685
Score = 1055 bits (2728), Expect = 0.0
Identities = 523/541 (96%), Positives = 528/541 (97%)
Frame = -3
Query: 2918 YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 2739
YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE
Sbjct: 145 YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 204
Query: 2738 QLADLDLRIIIDNSLLEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 2559
QLADLDLRIIIDNSL+EWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP
Sbjct: 205 QLADLDLRIIIDNSLVEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 264
Query: 2558 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 2379
EWMV PIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV
Sbjct: 265 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 324
Query: 2378 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 2199
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 325 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 384
Query: 2198 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 2019
SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL
Sbjct: 385 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 444
Query: 2018 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 1839
QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 445 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 504
Query: 1838 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNLYNCG 1659
SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGN+RGICANRYN YNCG
Sbjct: 505 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNQRGICANRYNPYNCG 564
Query: 1658 NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP 1479
N+QNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRI+LDSPFWLRWRLDHR+IGSREVP
Sbjct: 565 NHQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRIHLDSPFWLRWRLDHRIIGSREVP 624
Query: 1478 IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT 1299
IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT
Sbjct: 625 IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT 684
Query: 1298 I 1296
I
Sbjct: 685 I 685
Score = 301 bits (770), Expect = 4e-84
Identities = 144/154 (93%), Positives = 145/154 (94%)
Frame = -3
Query: 4088 MIDRYKHQQLRIGLVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 3909
MIDRYKHQQLRIG VSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGPVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 3908 FGPIKSGICACGNYRVIGAEKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWYLK 3729
GPIKSGICACGNYRVIGAEKEDPKFCEECGV FVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61 SGPIKSGICACGNYRVIGAEKEDPKFCEECGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 3728 RLPSYIANLLDKPLKELEGLVYCDV*FDRNLHFT 3627
RLPSYIANLLDKPLKELEGLVYCD LHF+
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDY-----LHFS 149
>gb|AEX94497.1| RNA polymerase beta (chloroplast) [Liriope spicata]
Length = 685
Score = 1055 bits (2727), Expect = 0.0
Identities = 524/541 (96%), Positives = 527/541 (97%)
Frame = -3
Query: 2918 YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 2739
YL+FSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE
Sbjct: 145 YLNFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 204
Query: 2738 QLADLDLRIIIDNSLLEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 2559
QLADLDLRIIIDNSL+EWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP
Sbjct: 205 QLADLDLRIIIDNSLVEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 264
Query: 2558 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 2379
EWMV PIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV
Sbjct: 265 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 324
Query: 2378 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 2199
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 325 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 384
Query: 2198 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 2019
SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL
Sbjct: 385 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 444
Query: 2018 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 1839
QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 445 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 504
Query: 1838 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNLYNCG 1659
SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYN YNCG
Sbjct: 505 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPYNCG 564
Query: 1658 NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP 1479
NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP
Sbjct: 565 NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP 624
Query: 1478 IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT 1299
IE QYESLGTYHEIYGHYLIVGSVKK+IRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT
Sbjct: 625 IEFQYESLGTYHEIYGHYLIVGSVKKKIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT 684
Query: 1298 I 1296
I
Sbjct: 685 I 685
Score = 302 bits (773), Expect = 2e-84
Identities = 142/144 (98%), Positives = 142/144 (98%)
Frame = -3
Query: 4088 MIDRYKHQQLRIGLVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 3909
MIDRYKHQQLRIG VSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGPVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 3908 FGPIKSGICACGNYRVIGAEKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWYLK 3729
GPIKSGICACGNYRVIGAEKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61 SGPIKSGICACGNYRVIGAEKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 3728 RLPSYIANLLDKPLKELEGLVYCD 3657
RLPSYIANLLDKPLKELEGLVYCD
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD 144
>ref|YP_009183190.1| RNA polymerase beta (chloroplast) [Polygonatum verticillatum]
ref|YP_009236351.1| DNA-directed RNA polymerase beta' chain (chloroplast) [Polygonatum
sibiricum]
gb|ALM87709.1| RNA polymerase beta (chloroplast) [Polygonatum verticillatum]
gb|AMF84065.1| DNA-directed RNA polymerase beta' chain (chloroplast) [Polygonatum
sibiricum]
Length = 686
Score = 1053 bits (2724), Expect = 0.0
Identities = 524/541 (96%), Positives = 527/541 (97%)
Frame = -3
Query: 2918 YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 2739
YL+FSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE
Sbjct: 146 YLNFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 205
Query: 2738 QLADLDLRIIIDNSLLEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 2559
QLADLDLRIIIDNSL+EWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP
Sbjct: 206 QLADLDLRIIIDNSLVEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 265
Query: 2558 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 2379
EWMV PIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV
Sbjct: 266 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 325
Query: 2378 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 2199
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 326 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 385
Query: 2198 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 2019
SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL
Sbjct: 386 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 445
Query: 2018 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 1839
QEVMQGH VLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 446 QEVMQGHSVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 505
Query: 1838 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNLYNCG 1659
SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYN YNCG
Sbjct: 506 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPYNCG 565
Query: 1658 NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP 1479
NYQN+KVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP
Sbjct: 566 NYQNEKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP 625
Query: 1478 IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT 1299
IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT
Sbjct: 626 IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT 685
Query: 1298 I 1296
I
Sbjct: 686 I 686
Score = 303 bits (776), Expect = 6e-85
Identities = 142/145 (97%), Positives = 143/145 (98%)
Frame = -3
Query: 4088 MIDRYKHQQLRIGLVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 3909
MIDRYKHQQLRIGLVSPQQIKAWANKILPNG+IVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGLVSPQQIKAWANKILPNGQIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 3908 FGPIKSGICACGNYRVIGAEKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWYLK 3729
GPIKSGICACGNYRVIGAEKEDPKFCEECGV FVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61 SGPIKSGICACGNYRVIGAEKEDPKFCEECGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 3728 RLPSYIANLLDKPLKELEGLVYCDV 3654
RLPSYIANLLDKPLKELEGLVYCDV
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDV 145
>ref|YP_009180099.1| RNA polymerase beta (chloroplast) [Polygonatum cyrtonema]
gb|ALL96467.1| RNA polymerase beta (chloroplast) [Polygonatum cyrtonema]
Length = 686
Score = 1052 bits (2720), Expect = 0.0
Identities = 523/541 (96%), Positives = 527/541 (97%)
Frame = -3
Query: 2918 YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 2739
YL+FSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE
Sbjct: 146 YLNFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 205
Query: 2738 QLADLDLRIIIDNSLLEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 2559
QLADLDL+IIIDNSL+EWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP
Sbjct: 206 QLADLDLQIIIDNSLVEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 265
Query: 2558 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 2379
EWMV PIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV
Sbjct: 266 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 325
Query: 2378 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 2199
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 326 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 385
Query: 2198 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 2019
SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL
Sbjct: 386 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 445
Query: 2018 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 1839
QEVMQGH VLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 446 QEVMQGHSVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 505
Query: 1838 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNLYNCG 1659
SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNR+GICANRYN YNCG
Sbjct: 506 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRQGICANRYNPYNCG 565
Query: 1658 NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP 1479
NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP
Sbjct: 566 NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP 625
Query: 1478 IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT 1299
IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT
Sbjct: 626 IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT 685
Query: 1298 I 1296
I
Sbjct: 686 I 686
Score = 301 bits (772), Expect = 2e-84
Identities = 142/145 (97%), Positives = 142/145 (97%)
Frame = -3
Query: 4088 MIDRYKHQQLRIGLVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 3909
MIDRYKHQQLRIG VSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGPVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 3908 FGPIKSGICACGNYRVIGAEKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWYLK 3729
GPIKSGICACGNYRVIGAEKEDPKFCEECGV FVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61 SGPIKSGICACGNYRVIGAEKEDPKFCEECGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 3728 RLPSYIANLLDKPLKELEGLVYCDV 3654
RLPSYIANLLDKPLKELEGLVYCDV
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDV 145
>gb|AEX94494.1| RNA polymerase beta (chloroplast) [Beaucarnea hookeri]
Length = 685
Score = 1049 bits (2712), Expect = 0.0
Identities = 523/541 (96%), Positives = 525/541 (97%)
Frame = -3
Query: 2918 YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 2739
YL+FSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE
Sbjct: 145 YLNFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 204
Query: 2738 QLADLDLRIIIDNSLLEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 2559
QLADLDLRIIIDNSL+EWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP
Sbjct: 205 QLADLDLRIIIDNSLVEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 264
Query: 2558 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 2379
EWMV PIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV
Sbjct: 265 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 324
Query: 2378 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 2199
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 325 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 384
Query: 2198 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 2019
SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL
Sbjct: 385 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 444
Query: 2018 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 1839
QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 445 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 504
Query: 1838 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNLYNCG 1659
SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYN YNCG
Sbjct: 505 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPYNCG 564
Query: 1658 NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP 1479
NYQ KKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINL SPFWLRWRLDHRVIGSREVP
Sbjct: 565 NYQKKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLASPFWLRWRLDHRVIGSREVP 624
Query: 1478 IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT 1299
IEVQYESLGTYHEIYGHYLIVGSVKKEIR IYIRTTVGHVSFYREIEEAIQGFCRAYSYT
Sbjct: 625 IEVQYESLGTYHEIYGHYLIVGSVKKEIRSIYIRTTVGHVSFYREIEEAIQGFCRAYSYT 684
Query: 1298 I 1296
I
Sbjct: 685 I 685
Score = 296 bits (759), Expect = 1e-82
Identities = 140/144 (97%), Positives = 140/144 (97%)
Frame = -3
Query: 4088 MIDRYKHQQLRIGLVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 3909
MIDRYKHQQLRIG VSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGPVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 3908 FGPIKSGICACGNYRVIGAEKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWYLK 3729
GPIKSGICACGN RVIGAEKEDPKFCEECGV FVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61 SGPIKSGICACGNSRVIGAEKEDPKFCEECGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 3728 RLPSYIANLLDKPLKELEGLVYCD 3657
RLPSYIANLLDKPLKELEGLVYCD
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD 144
>ref|YP_009431209.1| RNA polymerase beta (chloroplast) [Maianthemum bicolor]
gb|ASW26645.1| RNA polymerase beta (chloroplast) [Maianthemum bicolor]
Length = 687
Score = 1047 bits (2708), Expect = 0.0
Identities = 523/543 (96%), Positives = 526/543 (96%), Gaps = 2/543 (0%)
Frame = -3
Query: 2918 YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 2739
YL+FSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE
Sbjct: 145 YLNFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 204
Query: 2738 QLADLDLRIIIDNSLLEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 2559
QLADLDLRIIIDNSL+EWKELGDEES GNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP
Sbjct: 205 QLADLDLRIIIDNSLVEWKELGDEESPGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 264
Query: 2558 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 2379
EWMV PIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV
Sbjct: 265 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 324
Query: 2378 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 2199
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 325 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 384
Query: 2198 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 2019
SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL
Sbjct: 385 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 444
Query: 2018 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 1839
QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 445 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 504
Query: 1838 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNLY--N 1665
SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYN Y N
Sbjct: 505 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPYNSN 564
Query: 1664 CGNYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSRE 1485
CGNYQNKKV+ NNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSRE
Sbjct: 565 CGNYQNKKVEKNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSRE 624
Query: 1484 VPIEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYS 1305
VPIEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYS
Sbjct: 625 VPIEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYS 684
Query: 1304 YTI 1296
YTI
Sbjct: 685 YTI 687
Score = 300 bits (768), Expect = 8e-84
Identities = 141/144 (97%), Positives = 141/144 (97%)
Frame = -3
Query: 4088 MIDRYKHQQLRIGLVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 3909
MIDRYKHQQLRIG VSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGPVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 3908 FGPIKSGICACGNYRVIGAEKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWYLK 3729
GPIKSGICACGNYRVIGAEKEDPKFCEECGV FVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61 SGPIKSGICACGNYRVIGAEKEDPKFCEECGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 3728 RLPSYIANLLDKPLKELEGLVYCD 3657
RLPSYIANLLDKPLKELEGLVYCD
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD 144
>ref|YP_009335324.1| RNA polymerase beta (chloroplast) [Nolina atopocarpa]
gb|APO12382.1| RNA polymerase beta (chloroplast) [Nolina atopocarpa]
Length = 682
Score = 1046 bits (2705), Expect = 0.0
Identities = 521/541 (96%), Positives = 523/541 (96%)
Frame = -3
Query: 2918 YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 2739
Y FSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE
Sbjct: 142 YCDFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 201
Query: 2738 QLADLDLRIIIDNSLLEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 2559
QLADLDLRIIIDNSL+EWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP
Sbjct: 202 QLADLDLRIIIDNSLVEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 261
Query: 2558 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 2379
EWMV PIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV
Sbjct: 262 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 321
Query: 2378 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 2199
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381
Query: 2198 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 2019
SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 441
Query: 2018 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 1839
QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501
Query: 1838 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNLYNCG 1659
SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYN YNCG
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPYNCG 561
Query: 1658 NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP 1479
NY KKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINL SPFWLRW+LDHRVIGSREVP
Sbjct: 562 NYPKKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLASPFWLRWQLDHRVIGSREVP 621
Query: 1478 IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT 1299
IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT
Sbjct: 622 IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT 681
Query: 1298 I 1296
I
Sbjct: 682 I 682
Score = 301 bits (772), Expect = 2e-84
Identities = 143/149 (95%), Positives = 143/149 (95%)
Frame = -3
Query: 4088 MIDRYKHQQLRIGLVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 3909
MIDRYKHQQLRIG VSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGPVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 3908 FGPIKSGICACGNYRVIGAEKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWYLK 3729
GPIKSGICACGNYRVIGAEKEDPKFCEECGV FVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61 SGPIKSGICACGNYRVIGAEKEDPKFCEECGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 3728 RLPSYIANLLDKPLKELEGLVYCDV*FDR 3642
RLPSYIANLLDKPLKELEGLVYCD F R
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDFSFAR 149
>gb|AEX94495.1| RNA polymerase beta (chloroplast) [Dasylirion wheeleri]
Length = 685
Score = 1046 bits (2704), Expect = 0.0
Identities = 522/541 (96%), Positives = 524/541 (96%)
Frame = -3
Query: 2918 YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 2739
YL+FSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE
Sbjct: 145 YLNFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 204
Query: 2738 QLADLDLRIIIDNSLLEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 2559
QLADLDLRIIIDNSL+EWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVE
Sbjct: 205 QLADLDLRIIIDNSLVEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVET 264
Query: 2558 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 2379
EWMV PIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV
Sbjct: 265 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 324
Query: 2378 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 2199
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 325 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 384
Query: 2198 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 2019
SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL
Sbjct: 385 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 444
Query: 2018 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 1839
QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 445 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 504
Query: 1838 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNLYNCG 1659
SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYN YNCG
Sbjct: 505 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPYNCG 564
Query: 1658 NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP 1479
NYQ KKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINL SPFWLRWRLDHRVIGSREVP
Sbjct: 565 NYQKKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLASPFWLRWRLDHRVIGSREVP 624
Query: 1478 IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT 1299
IEVQYESLGTYHEIYGHYLIVGSVKKEIR IYIRTTVGHVSFYREIEEAIQGFCRAYSYT
Sbjct: 625 IEVQYESLGTYHEIYGHYLIVGSVKKEIRSIYIRTTVGHVSFYREIEEAIQGFCRAYSYT 684
Query: 1298 I 1296
I
Sbjct: 685 I 685
Score = 296 bits (759), Expect = 1e-82
Identities = 140/144 (97%), Positives = 140/144 (97%)
Frame = -3
Query: 4088 MIDRYKHQQLRIGLVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 3909
MIDRYKHQQLRIG VSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGPVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 3908 FGPIKSGICACGNYRVIGAEKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWYLK 3729
GPIKSGICACGN RVIGAEKEDPKFCEECGV FVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61 SGPIKSGICACGNSRVIGAEKEDPKFCEECGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 3728 RLPSYIANLLDKPLKELEGLVYCD 3657
RLPSYIANLLDKPLKELEGLVYCD
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD 144
>gb|AEX94478.1| RNA polymerase beta (chloroplast) [Asparagus asparagoides]
Length = 689
Score = 1045 bits (2703), Expect = 0.0
Identities = 520/543 (95%), Positives = 525/543 (96%), Gaps = 2/543 (0%)
Frame = -3
Query: 2918 YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 2739
YL+FSFARPI KKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE
Sbjct: 147 YLNFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 206
Query: 2738 QLADLDLRIIIDNSLLEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 2559
QLADLDLRII+DNSL+EWKELGDEE GNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP
Sbjct: 207 QLADLDLRIILDNSLVEWKELGDEEPVGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 266
Query: 2558 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 2379
EWMV PIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV
Sbjct: 267 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 326
Query: 2378 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 2199
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 327 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 386
Query: 2198 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 2019
SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL
Sbjct: 387 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 446
Query: 2018 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 1839
QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 447 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 506
Query: 1838 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNLYNCG 1659
SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYN YNCG
Sbjct: 507 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPYNCG 566
Query: 1658 NYQNKK--VDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSRE 1485
NYQNKK VDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSRE
Sbjct: 567 NYQNKKVDVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSRE 626
Query: 1484 VPIEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYS 1305
VP+EVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYS
Sbjct: 627 VPVEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYS 686
Query: 1304 YTI 1296
Y+I
Sbjct: 687 YSI 689
Score = 293 bits (751), Expect = 2e-81
Identities = 140/146 (95%), Positives = 140/146 (95%), Gaps = 2/146 (1%)
Frame = -3
Query: 4088 MIDRYKHQQLRIGLVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 3909
MIDRYKHQQLRIG VSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGPVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 3908 FGPIKSGICACGNYRVIGA--EKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWY 3735
GPIKSGICACGNYRVIG EKEDPKFCEECGV FVDSRIRRYQMGYIKLACPVTHVWY
Sbjct: 61 SGPIKSGICACGNYRVIGTEKEKEDPKFCEECGVEFVDSRIRRYQMGYIKLACPVTHVWY 120
Query: 3734 LKRLPSYIANLLDKPLKELEGLVYCD 3657
LKRLPSYIANLLDKPLKELEGLVYCD
Sbjct: 121 LKRLPSYIANLLDKPLKELEGLVYCD 146
>gb|AEX94501.1| RNA polymerase beta (chloroplast) [Maianthemum stellatum]
Length = 689
Score = 1044 bits (2700), Expect = 0.0
Identities = 524/545 (96%), Positives = 527/545 (96%), Gaps = 4/545 (0%)
Frame = -3
Query: 2918 YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 2739
YL+FSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE
Sbjct: 145 YLNFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 204
Query: 2738 QLADLDLRIIIDNSLLEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 2559
QLADLDLRIIIDNSL+EWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP
Sbjct: 205 QLADLDLRIIIDNSLVEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 264
Query: 2558 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 2379
EWMV PIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV
Sbjct: 265 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 324
Query: 2378 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 2199
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 325 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 384
Query: 2198 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 2019
SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL
Sbjct: 385 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 444
Query: 2018 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 1839
QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 445 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 504
Query: 1838 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYN--LYN 1665
SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYN YN
Sbjct: 505 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPYNYN 564
Query: 1664 CGNYQNKKVDNN--NYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGS 1491
CGNYQNKKV+ N NYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGS
Sbjct: 565 CGNYQNKKVEKNNYNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGS 624
Query: 1490 REVPIEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRA 1311
REVPIEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRA
Sbjct: 625 REVPIEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRA 684
Query: 1310 YSYTI 1296
YSYTI
Sbjct: 685 YSYTI 689
Score = 300 bits (768), Expect = 8e-84
Identities = 141/144 (97%), Positives = 141/144 (97%)
Frame = -3
Query: 4088 MIDRYKHQQLRIGLVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 3909
MIDRYKHQQLRIG VSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGPVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 3908 FGPIKSGICACGNYRVIGAEKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWYLK 3729
GPIKSGICACGNYRVIGAEKEDPKFCEECGV FVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61 SGPIKSGICACGNYRVIGAEKEDPKFCEECGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 3728 RLPSYIANLLDKPLKELEGLVYCD 3657
RLPSYIANLLDKPLKELEGLVYCD
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD 144
>ref|YP_009431123.1| RNA polymerase beta (chloroplast) [Asparagus schoberioides]
gb|AEX94477.1| RNA polymerase beta (chloroplast) [Asparagus officinalis]
gb|ASW26559.1| RNA polymerase beta (chloroplast) [Asparagus schoberioides]
Length = 689
Score = 1044 bits (2699), Expect = 0.0
Identities = 519/543 (95%), Positives = 525/543 (96%), Gaps = 2/543 (0%)
Frame = -3
Query: 2918 YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 2739
YL+FSFARPI KKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE
Sbjct: 147 YLNFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 206
Query: 2738 QLADLDLRIIIDNSLLEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 2559
QLADLDLRII+DNSL+EWKELGDEE GNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP
Sbjct: 207 QLADLDLRIILDNSLVEWKELGDEEPVGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 266
Query: 2558 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 2379
EWMV PIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV
Sbjct: 267 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 326
Query: 2378 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 2199
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 327 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 386
Query: 2198 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 2019
SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL
Sbjct: 387 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 446
Query: 2018 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 1839
QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 447 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 506
Query: 1838 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNLYNCG 1659
SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYN YNCG
Sbjct: 507 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPYNCG 566
Query: 1658 NYQNKK--VDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSRE 1485
NYQNKK VDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSRE
Sbjct: 567 NYQNKKVDVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSRE 626
Query: 1484 VPIEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYS 1305
VP+EVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFC+AYS
Sbjct: 627 VPVEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCQAYS 686
Query: 1304 YTI 1296
Y+I
Sbjct: 687 YSI 689
Score = 293 bits (751), Expect = 2e-81
Identities = 140/146 (95%), Positives = 140/146 (95%), Gaps = 2/146 (1%)
Frame = -3
Query: 4088 MIDRYKHQQLRIGLVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 3909
MIDRYKHQQLRIG VSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGPVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 3908 FGPIKSGICACGNYRVIGA--EKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWY 3735
GPIKSGICACGNYRVIG EKEDPKFCEECGV FVDSRIRRYQMGYIKLACPVTHVWY
Sbjct: 61 SGPIKSGICACGNYRVIGTEKEKEDPKFCEECGVEFVDSRIRRYQMGYIKLACPVTHVWY 120
Query: 3734 LKRLPSYIANLLDKPLKELEGLVYCD 3657
LKRLPSYIANLLDKPLKELEGLVYCD
Sbjct: 121 LKRLPSYIANLLDKPLKELEGLVYCD 146
>emb|CUS18626.1| RNA polymerase beta (plastid) [Asparagus officinalis]
Length = 689
Score = 1042 bits (2695), Expect = 0.0
Identities = 518/543 (95%), Positives = 525/543 (96%), Gaps = 2/543 (0%)
Frame = -3
Query: 2918 YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 2739
YL+FSFARPI KKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE
Sbjct: 147 YLNFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 206
Query: 2738 QLADLDLRIIIDNSLLEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 2559
QLADLDLRII+DNSL+EWKELGDEE GNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP
Sbjct: 207 QLADLDLRIILDNSLVEWKELGDEEPVGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 266
Query: 2558 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 2379
EWMV PIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV
Sbjct: 267 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 326
Query: 2378 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 2199
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 327 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 386
Query: 2198 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 2019
SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL
Sbjct: 387 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 446
Query: 2018 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 1839
QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 447 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 506
Query: 1838 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNLYNCG 1659
SLEAQAEARLLMFSHMNLLSPAIGDPISVP+QDMLIGLYVLTIGNRRGICANRYN YNCG
Sbjct: 507 SLEAQAEARLLMFSHMNLLSPAIGDPISVPSQDMLIGLYVLTIGNRRGICANRYNPYNCG 566
Query: 1658 NYQNKK--VDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSRE 1485
NYQNKK VDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSRE
Sbjct: 567 NYQNKKVDVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSRE 626
Query: 1484 VPIEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYS 1305
VP+EVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFC+AYS
Sbjct: 627 VPVEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCQAYS 686
Query: 1304 YTI 1296
Y+I
Sbjct: 687 YSI 689
Score = 292 bits (747), Expect = 5e-81
Identities = 139/146 (95%), Positives = 139/146 (95%), Gaps = 2/146 (1%)
Frame = -3
Query: 4088 MIDRYKHQQLRIGLVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 3909
MIDRYKHQQLRIG VSPQQIKAWANKILPNGEI GEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGPVSPQQIKAWANKILPNGEIAGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 3908 FGPIKSGICACGNYRVIGA--EKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWY 3735
GPIKSGICACGNYRVIG EKEDPKFCEECGV FVDSRIRRYQMGYIKLACPVTHVWY
Sbjct: 61 SGPIKSGICACGNYRVIGTEKEKEDPKFCEECGVEFVDSRIRRYQMGYIKLACPVTHVWY 120
Query: 3734 LKRLPSYIANLLDKPLKELEGLVYCD 3657
LKRLPSYIANLLDKPLKELEGLVYCD
Sbjct: 121 LKRLPSYIANLLDKPLKELEGLVYCD 146
>ref|YP_009432548.1| RNA polymerase beta (chloroplast) [Cordyline indivisa]
gb|AEX94492.1| RNA polymerase beta (chloroplast) [Cordyline australis]
gb|ATB18831.1| RNA polymerase beta (chloroplast) [Cordyline indivisa]
Length = 685
Score = 1042 bits (2694), Expect = 0.0
Identities = 515/541 (95%), Positives = 522/541 (96%)
Frame = -3
Query: 2918 YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 2739
YL FSFARPI KKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE
Sbjct: 145 YLDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 204
Query: 2738 QLADLDLRIIIDNSLLEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 2559
QLADLDLRIII+NSL+EWKELGDEESAGNEWEDRKIRRRKDFLVRRM+LAKHFIRTNVEP
Sbjct: 205 QLADLDLRIIIENSLVEWKELGDEESAGNEWEDRKIRRRKDFLVRRMKLAKHFIRTNVEP 264
Query: 2558 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 2379
EWMV PIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV
Sbjct: 265 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 324
Query: 2378 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 2199
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 325 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 384
Query: 2198 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 2019
SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQ IASNIGIAKSKIREKEPIVWEIL
Sbjct: 385 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQQIASNIGIAKSKIREKEPIVWEIL 444
Query: 2018 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 1839
QEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 445 QEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 504
Query: 1838 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNLYNCG 1659
SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYN YNCG
Sbjct: 505 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPYNCG 564
Query: 1658 NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP 1479
NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRV+GSREVP
Sbjct: 565 NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVVGSREVP 624
Query: 1478 IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT 1299
IEVQYESLGTYHEIYGHYLI GSVKKEI CIYIRTTVGHVSFYREIEEA+QGFCRAY+Y
Sbjct: 625 IEVQYESLGTYHEIYGHYLIAGSVKKEIHCIYIRTTVGHVSFYREIEEAVQGFCRAYAYA 684
Query: 1298 I 1296
I
Sbjct: 685 I 685
Score = 299 bits (765), Expect = 2e-83
Identities = 140/144 (97%), Positives = 141/144 (97%)
Frame = -3
Query: 4088 MIDRYKHQQLRIGLVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 3909
MIDRYKHQQLRIG VSPQQI+AWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGPVSPQQIRAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 3908 FGPIKSGICACGNYRVIGAEKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWYLK 3729
GPIKSGICACGNYRVIGAEKEDPKFCEECGV FVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61 SGPIKSGICACGNYRVIGAEKEDPKFCEECGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 3728 RLPSYIANLLDKPLKELEGLVYCD 3657
RLPSYIANLLDKPLKELEGLVYCD
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD 144
>ref|YP_009370012.1| RNA polymerase beta (chloroplast) [Asparagus officinalis]
gb|ARO91418.1| RNA polymerase beta (chloroplast) [Asparagus officinalis]
Length = 686
Score = 1041 bits (2692), Expect = 0.0
Identities = 518/543 (95%), Positives = 523/543 (96%), Gaps = 2/543 (0%)
Frame = -3
Query: 2918 YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 2739
Y FSFARPI KKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE
Sbjct: 144 YCDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 203
Query: 2738 QLADLDLRIIIDNSLLEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 2559
QLADLDLRII+DNSL+EWKELGDEE GNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP
Sbjct: 204 QLADLDLRIILDNSLVEWKELGDEEPVGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 263
Query: 2558 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 2379
EWMV PIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV
Sbjct: 264 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 323
Query: 2378 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 2199
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 324 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 383
Query: 2198 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 2019
SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL
Sbjct: 384 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 443
Query: 2018 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 1839
QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 444 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 503
Query: 1838 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNLYNCG 1659
SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYN YNCG
Sbjct: 504 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPYNCG 563
Query: 1658 NYQNKK--VDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSRE 1485
NYQNKK VDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSRE
Sbjct: 564 NYQNKKVDVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSRE 623
Query: 1484 VPIEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYS 1305
VP+EVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFC+AYS
Sbjct: 624 VPVEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCQAYS 683
Query: 1304 YTI 1296
Y+I
Sbjct: 684 YSI 686
Score = 295 bits (755), Expect = 4e-82
Identities = 142/151 (94%), Positives = 142/151 (94%), Gaps = 2/151 (1%)
Frame = -3
Query: 4088 MIDRYKHQQLRIGLVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 3909
MIDRYKHQQLRIG VSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGPVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 3908 FGPIKSGICACGNYRVIGA--EKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWY 3735
GPIKSGICACGNYRVIG EKEDPKFCEECGV FVDSRIRRYQMGYIKLACPVTHVWY
Sbjct: 61 SGPIKSGICACGNYRVIGTEKEKEDPKFCEECGVEFVDSRIRRYQMGYIKLACPVTHVWY 120
Query: 3734 LKRLPSYIANLLDKPLKELEGLVYCDV*FDR 3642
LKRLPSYIANLLDKPLKELEGLVYCD F R
Sbjct: 121 LKRLPSYIANLLDKPLKELEGLVYCDFSFAR 151
>ref|YP_009431295.1| RNA polymerase beta (chloroplast) [Agapanthus coddii]
gb|AEX94461.1| RNA polymerase beta (chloroplast) [Agapanthus africanus]
gb|ASW26731.1| RNA polymerase beta (chloroplast) [Agapanthus coddii]
Length = 685
Score = 1041 bits (2692), Expect = 0.0
Identities = 517/541 (95%), Positives = 521/541 (96%)
Frame = -3
Query: 2918 YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 2739
YLHFSFARPI KKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGA AIRE
Sbjct: 145 YLHFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGASAIRE 204
Query: 2738 QLADLDLRIIIDNSLLEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 2559
QLADLDLRIII+NSL+EWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP
Sbjct: 205 QLADLDLRIIIENSLVEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 264
Query: 2558 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 2379
EWMV PIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV
Sbjct: 265 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 324
Query: 2378 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 2199
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 325 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 384
Query: 2198 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 2019
SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL
Sbjct: 385 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 444
Query: 2018 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 1839
QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 445 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 504
Query: 1838 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNLYNCG 1659
SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYN YNCG
Sbjct: 505 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPYNCG 564
Query: 1658 NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP 1479
NYQNK VDNNNYKY KEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLD RVIGSREV
Sbjct: 565 NYQNKTVDNNNYKYMKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDQRVIGSREVS 624
Query: 1478 IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT 1299
IEVQYESLGTYHEIYGHYLIVGS+KKEIRCIYIRTTVGHVSFYREIEEA+QGFCRAYSY
Sbjct: 625 IEVQYESLGTYHEIYGHYLIVGSMKKEIRCIYIRTTVGHVSFYREIEEAVQGFCRAYSYA 684
Query: 1298 I 1296
I
Sbjct: 685 I 685
Score = 301 bits (770), Expect = 4e-84
Identities = 144/154 (93%), Positives = 145/154 (94%)
Frame = -3
Query: 4088 MIDRYKHQQLRIGLVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 3909
MIDRYKHQQLRIG VSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGPVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 3908 FGPIKSGICACGNYRVIGAEKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWYLK 3729
GPIKSGICACGNYRVIGAEKEDPKFCEECGV FVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61 SGPIKSGICACGNYRVIGAEKEDPKFCEECGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 3728 RLPSYIANLLDKPLKELEGLVYCDV*FDRNLHFT 3627
RLPSYIANLLDKPLKELEGLVYCD LHF+
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDY-----LHFS 149
>gb|AEX94500.1| RNA polymerase beta (chloroplast) [Sansevieria trifasciata]
Length = 688
Score = 1041 bits (2691), Expect = 0.0
Identities = 519/544 (95%), Positives = 524/544 (96%), Gaps = 3/544 (0%)
Frame = -3
Query: 2918 YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 2739
YL+FSFARPI KKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE
Sbjct: 145 YLNFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 204
Query: 2738 QLADLDLRIIIDNSLLEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 2559
QLADLDLRIIIDNSL+EWKELG+EESAGNEWEDRKIRRRKDFLVRRMELAKHFIR NVEP
Sbjct: 205 QLADLDLRIIIDNSLVEWKELGEEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRINVEP 264
Query: 2558 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 2379
EWMV PIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV
Sbjct: 265 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 324
Query: 2378 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 2199
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 325 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 384
Query: 2198 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 2019
SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHI SNIGIAK+KIREKEPIVWEIL
Sbjct: 385 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIVSNIGIAKNKIREKEPIVWEIL 444
Query: 2018 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 1839
QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 445 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 504
Query: 1838 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNLYNCG 1659
SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYN YNCG
Sbjct: 505 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPYNCG 564
Query: 1658 NYQNKKVDNNNY---KYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSR 1488
NYQNKKVD NNY KYTKEKEPYFCSSYDALGAY+QKRINLDSPFWLRWRLDHRVIGSR
Sbjct: 565 NYQNKKVDKNNYKYNKYTKEKEPYFCSSYDALGAYQQKRINLDSPFWLRWRLDHRVIGSR 624
Query: 1487 EVPIEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAY 1308
EVPIEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAY
Sbjct: 625 EVPIEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAY 684
Query: 1307 SYTI 1296
SYTI
Sbjct: 685 SYTI 688
Score = 300 bits (769), Expect = 6e-84
Identities = 141/144 (97%), Positives = 141/144 (97%)
Frame = -3
Query: 4088 MIDRYKHQQLRIGLVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 3909
MIDRYKHQQLRIG VSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGSVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 3908 FGPIKSGICACGNYRVIGAEKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWYLK 3729
GPIKSGICACGNYRVIGAEKEDPKFCEECGV FVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61 SGPIKSGICACGNYRVIGAEKEDPKFCEECGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 3728 RLPSYIANLLDKPLKELEGLVYCD 3657
RLPSYIANLLDKPLKELEGLVYCD
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD 144
>gb|AEX94475.1| RNA polymerase beta (chloroplast) [Scadoxus cinnabarinus]
Length = 685
Score = 1040 bits (2690), Expect = 0.0
Identities = 517/541 (95%), Positives = 521/541 (96%)
Frame = -3
Query: 2918 YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 2739
YL+FSFARPI KKPTFLRLRGLFEYEIQSWKYSIPLFFT QGFETFRNREISTGAGAIRE
Sbjct: 145 YLNFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTNQGFETFRNREISTGAGAIRE 204
Query: 2738 QLADLDLRIIIDNSLLEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 2559
QLADLDLRIIIDNSL+EWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP
Sbjct: 205 QLADLDLRIIIDNSLVEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 264
Query: 2558 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 2379
EWMV PIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV
Sbjct: 265 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 324
Query: 2378 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 2199
MCQEKLVQEAVDTLLDNGIRGQPMRD HNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 325 MCQEKLVQEAVDTLLDNGIRGQPMRDVHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 384
Query: 2198 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 2019
SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL
Sbjct: 385 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 444
Query: 2018 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 1839
QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 445 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 504
Query: 1838 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNLYNCG 1659
SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLT+GNRRGIC NRYN YNCG
Sbjct: 505 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTMGNRRGICENRYNPYNCG 564
Query: 1658 NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP 1479
NYQNK VDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLD RVIGSREVP
Sbjct: 565 NYQNKTVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDQRVIGSREVP 624
Query: 1478 IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT 1299
IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEA+QGFCRAYSY
Sbjct: 625 IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAVQGFCRAYSYA 684
Query: 1298 I 1296
I
Sbjct: 685 I 685
Score = 299 bits (765), Expect = 2e-83
Identities = 140/144 (97%), Positives = 141/144 (97%)
Frame = -3
Query: 4088 MIDRYKHQQLRIGLVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 3909
MIDRYKHQQLRIG VSPQQI+AWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGPVSPQQIRAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 3908 FGPIKSGICACGNYRVIGAEKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWYLK 3729
GPIKSGICACGNYRVIGAEKEDPKFCEECGV FVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61 SGPIKSGICACGNYRVIGAEKEDPKFCEECGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 3728 RLPSYIANLLDKPLKELEGLVYCD 3657
RLPSYIANLLDKPLKELEGLVYCD
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD 144
>gb|AEX94462.1| RNA polymerase beta (chloroplast) [Anemarrhena asphodeloides]
Length = 685
Score = 1040 bits (2690), Expect = 0.0
Identities = 516/541 (95%), Positives = 521/541 (96%)
Frame = -3
Query: 2918 YLHFSFARPIVKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAGAIRE 2739
YL+FSFARP+ KKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGA AIRE
Sbjct: 145 YLNFSFARPVAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGASAIRE 204
Query: 2738 QLADLDLRIIIDNSLLEWKELGDEESAGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 2559
QLADLDLRIIIDNSL+EWKELGDEES GNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP
Sbjct: 205 QLADLDLRIIIDNSLVEWKELGDEESVGNEWEDRKIRRRKDFLVRRMELAKHFIRTNVEP 264
Query: 2558 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 2379
EWMV PIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV
Sbjct: 265 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLATSRSTPGELV 324
Query: 2378 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 2199
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 325 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 384
Query: 2198 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 2019
SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL
Sbjct: 385 SVIVVGPSLSLHQCGLPREIAIELFQTFVIRGLIRQHIASNIGIAKSKIREKEPIVWEIL 444
Query: 2018 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 1839
QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 445 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 504
Query: 1838 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNLYNCG 1659
SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYN YNCG
Sbjct: 505 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPYNCG 564
Query: 1658 NYQNKKVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDHRVIGSREVP 1479
NYQNK VDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLD RVIGSREVP
Sbjct: 565 NYQNKTVDNNNYKYTKEKEPYFCSSYDALGAYRQKRINLDSPFWLRWRLDQRVIGSREVP 624
Query: 1478 IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTVGHVSFYREIEEAIQGFCRAYSYT 1299
IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTT+G VSFYREIEEA+QGFCRAYSY
Sbjct: 625 IEVQYESLGTYHEIYGHYLIVGSVKKEIRCIYIRTTMGRVSFYREIEEAVQGFCRAYSYA 684
Query: 1298 I 1296
I
Sbjct: 685 I 685
Score = 299 bits (765), Expect = 2e-83
Identities = 140/144 (97%), Positives = 141/144 (97%)
Frame = -3
Query: 4088 MIDRYKHQQLRIGLVSPQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 3909
MIDRYKHQQLRIG VSPQQI+AWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGPVSPQQIRAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 3908 FGPIKSGICACGNYRVIGAEKEDPKFCEECGVAFVDSRIRRYQMGYIKLACPVTHVWYLK 3729
GPIKSGICACGNYRVIGAEKEDPKFCEECGV FVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61 SGPIKSGICACGNYRVIGAEKEDPKFCEECGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 3728 RLPSYIANLLDKPLKELEGLVYCD 3657
RLPSYIANLLDKPLKELEGLVYCD
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD 144