BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00015237
         (1791 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020574967.1| DNA-directed RNA polymerase III subunit RPC6...    62   1e-20
ref|XP_020691279.1| DNA-directed RNA polymerase III subunit RPC6...    63   1e-19
ref|XP_006465349.1| PREDICTED: DNA-directed RNA polymerase III s...    48   5e-11
ref|XP_006427248.1| DNA-directed RNA polymerase III subunit RPC6...    48   5e-11
ref|XP_021609496.1| DNA-directed RNA polymerase III subunit RPC6...    43   1e-10
ref|XP_006475958.1| PREDICTED: DNA-directed RNA polymerase III s...    48   3e-10
ref|XP_021681807.1| DNA-directed RNA polymerase III subunit RPC6...    43   3e-10
ref|XP_006475959.1| PREDICTED: DNA-directed RNA polymerase III s...    48   3e-10
ref|XP_015872858.1| PREDICTED: DNA-directed RNA polymerase III s...    44   6e-10
gb|KDO80021.1| hypothetical protein CISIN_1g0254932mg, partial [...    47   6e-10
ref|NP_001151058.1| RNA polymerase Rpc34 subunit family protein ...    52   3e-09
ref|XP_020399298.1| RNA polymerase Rpc34 subunit family protein ...    52   3e-09
ref|XP_020246712.1| DNA-directed RNA polymerase III subunit RPC6...    67   1e-08
ref|XP_002509507.1| PREDICTED: DNA-directed RNA polymerase III s...    43   1e-08
ref|XP_022721223.1| DNA-directed RNA polymerase III subunit RPC6...    43   2e-08
gb|PIN15632.1| RNA polymerase III, subunit C34 [Handroanthus imp...    44   3e-08
emb|CBI36309.3| unnamed protein product, partial [Vitis vinifera]      48   4e-08
gb|KRH01470.1| hypothetical protein GLYMA_18G279200 [Glycine max]      45   6e-08
ref|XP_003551792.1| PREDICTED: DNA-directed RNA polymerase III s...    45   6e-08
gb|EOY25790.1| DNA-directed RNA polymerase III subunit rpc6, put...    42   6e-08

>ref|XP_020574967.1| DNA-directed RNA polymerase III subunit RPC6 [Phalaenopsis
           equestris]
          Length = 282

 Score = 62.0 bits (149), Expect(3) = 1e-20
 Identities = 34/69 (49%), Positives = 41/69 (59%)
 Frame = -3

Query: 208 KLQSSGVGEFSHVLAGKDCYRILKGREGPKESALVSLLVWELP*INECMPSRSTLLINSV 29
           +L SSGVGEFS++ AGK CYR L+GR GPK   L S+     P INEC P         V
Sbjct: 213 ELISSGVGEFSNIQAGKKCYRSLRGRGGPKAGGLSSVPCGVCPRINECSPDGIISPKTCV 272

Query: 28  YYR*CLSVD 2
           YY+  L +D
Sbjct: 273 YYQKWLGLD 281



 Score = 55.1 bits (131), Expect(3) = 1e-20
 Identities = 26/47 (55%), Positives = 36/47 (76%)
 Frame = -1

Query: 552 GILSTMVTKALKSIQTKNLMKEVATVIYKSKKIFMTMKFNTSKEISG 412
           G+ +  VTKALKS+Q+KNL+K+V  V  K++K FM ++F  SKEISG
Sbjct: 97  GLANNAVTKALKSLQSKNLIKDVVNVHNKARKFFMAVEFEPSKEISG 143



 Score = 33.9 bits (76), Expect(3) = 1e-20
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -2

Query: 380 FIKILGQQCMMHTLKLNVATGMGI*VVIRESHVFNMEIS 264
           FI+IL +QC MH  +L +A+   +   +R+S +F  E S
Sbjct: 156 FIRILREQCRMHVERLKIASVENVWKCVRDSGIFKTECS 194


>ref|XP_020691279.1| DNA-directed RNA polymerase III subunit RPC6 [Dendrobium catenatum]
 ref|XP_020691280.1| DNA-directed RNA polymerase III subunit RPC6 [Dendrobium catenatum]
 gb|PKU75411.1| hypothetical protein MA16_Dca020480 [Dendrobium catenatum]
          Length = 231

 Score = 62.8 bits (151), Expect(3) = 1e-19
 Identities = 32/69 (46%), Positives = 42/69 (60%)
 Frame = -3

Query: 208 KLQSSGVGEFSHVLAGKDCYRILKGREGPKESALVSLLVWELP*INECMPSRSTLLINSV 29
           +L SSGVG+F H+ AG++CYR LKGR+GPKE    ++     P INEC P         V
Sbjct: 162 ELISSGVGDFFHIRAGRECYRSLKGRDGPKEGFFSAVPCGVCPRINECSPDGIISPNTCV 221

Query: 28  YYR*CLSVD 2
           YY+  L +D
Sbjct: 222 YYQKWLGLD 230



 Score = 51.6 bits (122), Expect(3) = 1e-19
 Identities = 24/47 (51%), Positives = 35/47 (74%)
 Frame = -1

Query: 552 GILSTMVTKALKSIQTKNLMKEVATVIYKSKKIFMTMKFNTSKEISG 412
           G+ +  VTKALKS+Q+K  +K+V  +  K+KKI+M ++F  SKEISG
Sbjct: 46  GLPNNAVTKALKSLQSKGFIKDVVNIHNKAKKIYMAVEFEPSKEISG 92



 Score = 33.1 bits (74), Expect(3) = 1e-19
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = -2

Query: 380 FIKILGQQCMMHTLKLNVATGMGI*VVIRESHVFNMEIS 264
           FI IL +QC +H  +L VAT   +   IR+S VF ++ S
Sbjct: 105 FITILRKQCRLHVERLKVATLENVWQFIRDSKVFYIDFS 143


>ref|XP_006465349.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
           [Citrus sinensis]
          Length = 233

 Score = 47.8 bits (112), Expect(3) = 5e-11
 Identities = 23/48 (47%), Positives = 33/48 (68%)
 Frame = -1

Query: 555 VGILSTMVTKALKSIQTKNLMKEVATVIYKSKKIFMTMKFNTSKEISG 412
           V +   +VTK++KS+Q K+L+KEV  +  K KK  M ++F  SKEISG
Sbjct: 46  VNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISG 93



 Score = 38.5 bits (88), Expect(3) = 5e-11
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = -3

Query: 208 KLQSSGVGEFSHVLAGKDCYR-ILKGREG--PKESALVSLLVWELP*INECMPSRSTLLI 38
           +++S+G GEF+++  GK CY+ + KG  G  PK  +L S+     P IN C P       
Sbjct: 163 EVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICTPDGVISPK 222

Query: 37  NSVYY 23
             VYY
Sbjct: 223 TCVYY 227



 Score = 31.6 bits (70), Expect(3) = 5e-11
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -2

Query: 380 FIKILGQQCMMHTLKLNVATGMGI*VVIRESHVFNMEIS 264
           FIK++  QC+   +KL VAT  GI   I+ S  F ++++
Sbjct: 106 FIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLT 144


>ref|XP_006427248.1| DNA-directed RNA polymerase III subunit RPC6 [Citrus clementina]
 ref|XP_024036378.1| DNA-directed RNA polymerase III subunit RPC6 [Citrus clementina]
 gb|ESR40488.1| hypothetical protein CICLE_v10026399mg [Citrus clementina]
 gb|KDO45213.1| hypothetical protein CISIN_1g026766mg [Citrus sinensis]
 gb|KDO45214.1| hypothetical protein CISIN_1g026766mg [Citrus sinensis]
 dbj|GAY63105.1| hypothetical protein CUMW_222970 [Citrus unshiu]
          Length = 233

 Score = 47.8 bits (112), Expect(3) = 5e-11
 Identities = 23/48 (47%), Positives = 33/48 (68%)
 Frame = -1

Query: 555 VGILSTMVTKALKSIQTKNLMKEVATVIYKSKKIFMTMKFNTSKEISG 412
           V +   +VTK++KS+Q K+L+KEV  +  K KK  M ++F  SKEISG
Sbjct: 46  VNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISG 93



 Score = 38.5 bits (88), Expect(3) = 5e-11
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = -3

Query: 208 KLQSSGVGEFSHVLAGKDCYR-ILKGREG--PKESALVSLLVWELP*INECMPSRSTLLI 38
           +++S+G GEF+++  GK CY+ + KG  G  PK  +L S+     P IN C P       
Sbjct: 163 EVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPK 222

Query: 37  NSVYY 23
             VYY
Sbjct: 223 TCVYY 227



 Score = 31.6 bits (70), Expect(3) = 5e-11
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -2

Query: 380 FIKILGQQCMMHTLKLNVATGMGI*VVIRESHVFNMEIS 264
           FIK++  QC+   +KL VAT  GI   I+ S  F ++++
Sbjct: 106 FIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLT 144


>ref|XP_021609496.1| DNA-directed RNA polymerase III subunit RPC6 [Manihot esculenta]
 gb|OAY52825.1| hypothetical protein MANES_04G114300 [Manihot esculenta]
 gb|OAY52826.1| hypothetical protein MANES_04G114300 [Manihot esculenta]
          Length = 236

 Score = 43.1 bits (100), Expect(3) = 1e-10
 Identities = 20/42 (47%), Positives = 29/42 (69%)
 Frame = -1

Query: 537 MVTKALKSIQTKNLMKEVATVIYKSKKIFMTMKFNTSKEISG 412
           +V K+LK +Q KNL+KEV  +  K +K +M  +F  SKEI+G
Sbjct: 55  VVNKSLKVLQAKNLIKEVVNIQNKGRKHYMATEFEPSKEITG 96



 Score = 40.4 bits (93), Expect(3) = 1e-10
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = -3

Query: 208 KLQSSGVGEFSHVLAGKDCYR-ILKGREG--PKESALVSLLVWELP*INECMPSRSTLLI 38
           +L+S+G+GEF+ +  GK CY+ I KG  G  PK  A+ S+     P I++C P       
Sbjct: 166 ELKSNGMGEFASIPVGKICYKCISKGSGGGEPKIGAMASIPCGVCPRIHQCTPDGIISPQ 225

Query: 37  NSVYY 23
             VYY
Sbjct: 226 TCVYY 230



 Score = 32.7 bits (73), Expect(3) = 1e-10
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = -2

Query: 380 FIKILGQQCMMHTLKLNVATGMGI*VVIRESHVFNMEIS 264
           FI+IL +QC     KL VAT  GI   I+ S V N+E++
Sbjct: 109 FIQILKEQCTKQIYKLKVATLEGITDSIKRSGVLNVELT 147


>ref|XP_006475958.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
           isoform X1 [Citrus sinensis]
          Length = 252

 Score = 47.8 bits (112), Expect(3) = 3e-10
 Identities = 23/48 (47%), Positives = 33/48 (68%)
 Frame = -1

Query: 555 VGILSTMVTKALKSIQTKNLMKEVATVIYKSKKIFMTMKFNTSKEISG 412
           V +   +VTK++KS+Q K+L+KEV  +  K KK  M ++F  SKEISG
Sbjct: 65  VNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKEISG 112



 Score = 35.8 bits (81), Expect(3) = 3e-10
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = -3

Query: 208 KLQSSGVGEFSHVLAGKDCYR-ILKGREG--PKESALVSLLVWELP*INECMPSRSTLLI 38
           +++S+G GEF+++  GK CY+ + KG  G  PK  +  S+     P IN C P       
Sbjct: 182 EVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPK 241

Query: 37  NSVYY 23
             VYY
Sbjct: 242 TCVYY 246



 Score = 31.6 bits (70), Expect(3) = 3e-10
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -2

Query: 380 FIKILGQQCMMHTLKLNVATGMGI*VVIRESHVFNMEIS 264
           FIK++  QC+   +KL VAT  GI   I+ S  F ++++
Sbjct: 125 FIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLT 163


>ref|XP_021681807.1| DNA-directed RNA polymerase III subunit RPC6-like [Hevea
           brasiliensis]
          Length = 236

 Score = 43.1 bits (100), Expect(3) = 3e-10
 Identities = 20/42 (47%), Positives = 29/42 (69%)
 Frame = -1

Query: 537 MVTKALKSIQTKNLMKEVATVIYKSKKIFMTMKFNTSKEISG 412
           +V K+LK +Q KNL+KEV  +  K +K +M  +F  SKEI+G
Sbjct: 55  VVNKSLKVLQAKNLIKEVVNIQNKGRKHYMATEFEPSKEITG 96



 Score = 39.7 bits (91), Expect(3) = 3e-10
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = -3

Query: 208 KLQSSGVGEFSHVLAGKDCYR-ILKGREG--PKESALVSLLVWELP*INECMPSRSTLLI 38
           +L+S+G+GEF+ +  GK CY+ I KG  G  P+  A+ S+     P I +C P       
Sbjct: 166 ELKSNGMGEFASIPVGKICYKCISKGNIGGEPRTGAMASIPCGVCPRIRQCTPDGIISPQ 225

Query: 37  NSVYY 23
             VYY
Sbjct: 226 TCVYY 230



 Score = 32.3 bits (72), Expect(3) = 3e-10
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = -2

Query: 380 FIKILGQQCMMHTLKLNVATGMGI*VVIRESHVFNMEIS 264
           FI+IL +QC     KL VAT  G+   I+ S V N+E++
Sbjct: 109 FIQILKEQCTKQIYKLKVATLEGVTDSIKRSGVLNVELT 147


>ref|XP_006475959.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
           isoform X2 [Citrus sinensis]
          Length = 234

 Score = 47.8 bits (112), Expect(3) = 3e-10
 Identities = 23/48 (47%), Positives = 33/48 (68%)
 Frame = -1

Query: 555 VGILSTMVTKALKSIQTKNLMKEVATVIYKSKKIFMTMKFNTSKEISG 412
           V +   +VTK++KS+Q K+L+KEV  +  K KK  M ++F  SKEISG
Sbjct: 47  VNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKEISG 94



 Score = 35.8 bits (81), Expect(3) = 3e-10
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = -3

Query: 208 KLQSSGVGEFSHVLAGKDCYR-ILKGREG--PKESALVSLLVWELP*INECMPSRSTLLI 38
           +++S+G GEF+++  GK CY+ + KG  G  PK  +  S+     P IN C P       
Sbjct: 164 EVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPK 223

Query: 37  NSVYY 23
             VYY
Sbjct: 224 TCVYY 228



 Score = 31.6 bits (70), Expect(3) = 3e-10
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -2

Query: 380 FIKILGQQCMMHTLKLNVATGMGI*VVIRESHVFNMEIS 264
           FIK++  QC+   +KL VAT  GI   I+ S  F ++++
Sbjct: 107 FIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLT 145


>ref|XP_015872858.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Ziziphus
           jujuba]
          Length = 238

 Score = 44.3 bits (103), Expect(3) = 6e-10
 Identities = 21/42 (50%), Positives = 29/42 (69%)
 Frame = -1

Query: 537 MVTKALKSIQTKNLMKEVATVIYKSKKIFMTMKFNTSKEISG 412
           +V K+LKS+Q K L+KEV  +  K +K +M  +F  SKEISG
Sbjct: 58  VVNKSLKSLQAKKLIKEVVNIQNKGRKHYMAAEFEPSKEISG 99



 Score = 40.0 bits (92), Expect(3) = 6e-10
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -3

Query: 205 LQSSGVGEFSHVLAGKDCYRIL-KGREG-PKESALVSLLVWELP*INECMPSRSTLLINS 32
           ++S+G+GEF  +  GK CY+   KG  G PK  A+ S+     P IN C P         
Sbjct: 170 VKSNGMGEFDSIPVGKVCYKCTNKGVRGEPKAGAMASIPCGVCPRINHCTPDGIISPTTC 229

Query: 31  VYY 23
           VYY
Sbjct: 230 VYY 232



 Score = 29.6 bits (65), Expect(3) = 6e-10
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 380 FIKILGQQCMMHTLKLNVATGMGI*VVIRESHVFNMEIS 264
           FI +L  QC     K  VAT  GI  VIR + +F +E S
Sbjct: 112 FIDLLKDQCAKIIYKQRVATVEGILDVIRRTGIFKVEFS 150


>gb|KDO80021.1| hypothetical protein CISIN_1g0254932mg, partial [Citrus sinensis]
          Length = 234

 Score = 46.6 bits (109), Expect(3) = 6e-10
 Identities = 22/48 (45%), Positives = 33/48 (68%)
 Frame = -1

Query: 555 VGILSTMVTKALKSIQTKNLMKEVATVIYKSKKIFMTMKFNTSKEISG 412
           V +   +VTK++KS+Q K+L+KEV  +  K KK  M ++F  SK+ISG
Sbjct: 47  VNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISG 94



 Score = 35.8 bits (81), Expect(3) = 6e-10
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = -3

Query: 208 KLQSSGVGEFSHVLAGKDCYR-ILKGREG--PKESALVSLLVWELP*INECMPSRSTLLI 38
           +++S+G GEF+++  GK CY+ + KG  G  PK  +  S+     P IN C P       
Sbjct: 164 EVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPK 223

Query: 37  NSVYY 23
             VYY
Sbjct: 224 TCVYY 228



 Score = 31.6 bits (70), Expect(3) = 6e-10
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -2

Query: 380 FIKILGQQCMMHTLKLNVATGMGI*VVIRESHVFNMEIS 264
           FIK++  QC+   +KL VAT  GI   I+ S  F ++++
Sbjct: 107 FIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLT 145


>ref|NP_001151058.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
 gb|ACG41460.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
          Length = 260

 Score = 52.4 bits (124), Expect(2) = 3e-09
 Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
 Frame = -1

Query: 537 MVTKALKSIQTKNLMKEVATVIYKSKKIFMTMKFNTSKEISGSVPWCGTQLSVHQNIRAT 358
           + TK ++++ T+ L+KEV+ V ++S+KIFM   F  S EI+G   W       + + R  
Sbjct: 83  IATKVVRTLVTRRLLKEVSDVRHRSRKIFMATDFQPSAEITGGT-W-------YHDGRLD 134

Query: 357 MHDAYSETQCCHWHGDMSGH*GVTCLQHGNL--------TL*QIVDLVDLIVLDKEVENC 202
                +  +CC    +  G   V  + HG L        T+ +I D++  +VLDK +E  
Sbjct: 135 TDAVTTARRCCQAQVERLGAATVQMIHHGILKDDPRAGYTIDKIRDIIKTMVLDKVLEEV 194

Query: 201 RALVSG 184
           ++  +G
Sbjct: 195 KSTGTG 200



 Score = 40.0 bits (92), Expect(2) = 3e-09
 Identities = 23/69 (33%), Positives = 35/69 (50%)
 Frame = -3

Query: 208 KLQSSGVGEFSHVLAGKDCYRILKGREGPKESALVSLLVWELP*INECMPSRSTLLINSV 29
           +++S+G GEF  V AG  CYR++ G   P+   +  +     P I+EC P         V
Sbjct: 193 EVKSTGTGEFRDVRAGTMCYRLVTG--APQGGTMEGIPCGVCPRIDECSPEGIISPSTCV 250

Query: 28  YYR*CLSVD 2
           YY+  L +D
Sbjct: 251 YYKNWLQMD 259


>ref|XP_020399298.1| RNA polymerase Rpc34 subunit family protein isoform X1 [Zea mays]
 ref|XP_020399299.1| RNA polymerase Rpc34 subunit family protein isoform X1 [Zea mays]
 ref|XP_020399300.1| RNA polymerase Rpc34 subunit family protein isoform X1 [Zea mays]
 gb|ACN31977.1| unknown [Zea mays]
 gb|AQL04399.1| DNA binding [Zea mays]
          Length = 260

 Score = 52.4 bits (124), Expect(2) = 3e-09
 Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
 Frame = -1

Query: 537 MVTKALKSIQTKNLMKEVATVIYKSKKIFMTMKFNTSKEISGSVPWCGTQLSVHQNIRAT 358
           + TK ++++ T+ L+KEV+ V ++S+KIFM   F  S EI+G   W       + + R  
Sbjct: 83  IATKVVRTLVTRRLLKEVSDVRHRSRKIFMATDFQPSAEITGGT-W-------YHDGRLD 134

Query: 357 MHDAYSETQCCHWHGDMSGH*GVTCLQHGNL--------TL*QIVDLVDLIVLDKEVENC 202
                +  +CC    +  G   V  + HG L        T+ +I D++  +VLDK +E  
Sbjct: 135 TDAVTTARRCCQAQVERLGAATVQMIHHGILKDDPRAGYTIDKIRDIIKTMVLDKVLEEV 194

Query: 201 RALVSG 184
           ++  +G
Sbjct: 195 KSTGTG 200



 Score = 39.7 bits (91), Expect(2) = 3e-09
 Identities = 23/69 (33%), Positives = 35/69 (50%)
 Frame = -3

Query: 208 KLQSSGVGEFSHVLAGKDCYRILKGREGPKESALVSLLVWELP*INECMPSRSTLLINSV 29
           +++S+G GEF  V AG  CYR++ G   P+   +  +     P I+EC P         V
Sbjct: 193 EVKSTGTGEFRDVRAGTMCYRLVTG--APQGGMMEGIPCGVCPRIDECSPEGIISPSTCV 250

Query: 28  YYR*CLSVD 2
           YY+  L +D
Sbjct: 251 YYKKWLQMD 259


>ref|XP_020246712.1| DNA-directed RNA polymerase III subunit RPC6 [Asparagus
           officinalis]
 ref|XP_020246713.1| DNA-directed RNA polymerase III subunit RPC6 [Asparagus
           officinalis]
 gb|ONK58492.1| uncharacterized protein A4U43_C09F13600 [Asparagus officinalis]
          Length = 231

 Score = 67.0 bits (162), Expect = 1e-08
 Identities = 32/62 (51%), Positives = 40/62 (64%)
 Frame = -3

Query: 208 KLQSSGVGEFSHVLAGKDCYRILKGREGPKESALVSLLVWELP*INECMPSRSTLLINSV 29
           K++SSGVG+FSHV  G+DCYR+ +G  GPKE A  S+     P I+EC P      IN V
Sbjct: 161 KVRSSGVGDFSHVPEGRDCYRVSRGEGGPKEGAFASIPCGVCPRIHECTPDGVISPINCV 220

Query: 28  YY 23
           YY
Sbjct: 221 YY 222


>ref|XP_002509507.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Ricinus
           communis]
 ref|XP_015570361.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Ricinus
           communis]
 ref|XP_015570404.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Ricinus
           communis]
 gb|EEF50894.1| DNA-directed RNA polymerase III subunit F, putative [Ricinus
           communis]
          Length = 236

 Score = 43.1 bits (100), Expect(3) = 1e-08
 Identities = 20/42 (47%), Positives = 29/42 (69%)
 Frame = -1

Query: 537 MVTKALKSIQTKNLMKEVATVIYKSKKIFMTMKFNTSKEISG 412
           +V K+LK +Q KNL+KEV  +  K +K +M  +F  SKEI+G
Sbjct: 55  VVNKSLKVLQAKNLIKEVVNIQNKGRKHYMATEFEPSKEITG 96



 Score = 34.3 bits (77), Expect(3) = 1e-08
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = -2

Query: 380 FIKILGQQCMMHTLKLNVATGMGI*VVIRESHVFNMEIS 264
           FIK+L + C    LKL VAT  GI   I+ S +FN E++
Sbjct: 109 FIKLLKEVCTKQVLKLKVATLEGITDSIKRSGIFNTELT 147



 Score = 32.3 bits (72), Expect(3) = 1e-08
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = -3

Query: 208 KLQSSGVGEFSHVLAGKDCYRIL-KGREG--PKESALVSLLVWELP*INECMPSRSTLLI 38
           +++S+G+ EFS +  GK CY+ + KG     P+  A+ S+     P I++C P       
Sbjct: 166 EVKSNGMLEFSFIPIGKVCYKCVGKGSTAGEPRIGAMASIPCGVCPRISQCTPDGIISPQ 225

Query: 37  NSVYY 23
             VYY
Sbjct: 226 TCVYY 230


>ref|XP_022721223.1| DNA-directed RNA polymerase III subunit RPC6 [Durio zibethinus]
          Length = 237

 Score = 42.7 bits (99), Expect(3) = 2e-08
 Identities = 19/48 (39%), Positives = 32/48 (66%)
 Frame = -1

Query: 555 VGILSTMVTKALKSIQTKNLMKEVATVIYKSKKIFMTMKFNTSKEISG 412
           + +   +VTK LKS+  KNL+KEV  +  + +K F++++F  S EI+G
Sbjct: 50  INLPDNLVTKCLKSLLAKNLIKEVKNIQSRGRKHFISVEFEPSNEITG 97



 Score = 38.9 bits (89), Expect(3) = 2e-08
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
 Frame = -3

Query: 208 KLQSSGVGEFSHVLAGKDCYRILKGREG----PKESALVSLLVWELP*INECMPSRSTLL 41
           +++SSG GEF+ +  GK CY+ + G+ G    PK  A+ S+     P I+ C P      
Sbjct: 167 EVKSSGTGEFASIPVGKVCYKCI-GKRGYGGEPKFGAMASIPCGVCPQISHCTPDGIISP 225

Query: 40  INSVYYR 20
              VYY+
Sbjct: 226 KTCVYYK 232



 Score = 27.3 bits (59), Expect(3) = 2e-08
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 380 FIKILGQQCMMHTLKLNVATGMGI*VVIRESHVFNMEIS 264
           +I +L +QC      L VAT  G+   I+ S+V  +E+S
Sbjct: 110 YINVLKEQCWRKIYGLKVATLEGVTDAIKRSNVSQIELS 148


>gb|PIN15632.1| RNA polymerase III, subunit C34 [Handroanthus impetiginosus]
          Length = 240

 Score = 43.9 bits (102), Expect(3) = 3e-08
 Identities = 20/42 (47%), Positives = 30/42 (71%)
 Frame = -1

Query: 537 MVTKALKSIQTKNLMKEVATVIYKSKKIFMTMKFNTSKEISG 412
           ++ K++KS+ TK L+KEV  +  K KK +M ++F  SKEISG
Sbjct: 57  VIQKSIKSLLTKKLIKEVVNIQNKGKKHYMAVEFEPSKEISG 98



 Score = 39.3 bits (90), Expect(3) = 3e-08
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = -3

Query: 208 KLQSSGVGEFSHVLAGKDCYRILKGR---EGPKESALVSLLVWELP*INECMPSRSTLLI 38
           +++S+G+GE+  +  G  CYR+  G    +GP+  A  S+     P I+ C P       
Sbjct: 168 EVKSTGLGEYHSIPIGTVCYRVASGTGAGKGPRIGAFASIPCGACPRISLCTPDGVISPS 227

Query: 37  NSVYYR*CLSVD 2
             VYY   L++D
Sbjct: 228 TCVYYNKWLNID 239



 Score = 25.0 bits (53), Expect(3) = 3e-08
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 380 FIKILGQQCMMHTLKLNVATGMGI*VVIRESHVFNMEIS 264
           FI +L Q C+ +  +  VAT  G+   +++S V    IS
Sbjct: 111 FINVLKQLCLRYMHRQKVATLEGVHNELKKSQVLKFPIS 149


>emb|CBI36309.3| unnamed protein product, partial [Vitis vinifera]
          Length = 493

 Score = 47.8 bits (112), Expect(2) = 4e-08
 Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
 Frame = -1

Query: 537 MVTKALKSIQTKNLMKEVATVIYKSKKIFMTMKFNTSKEISGSVPWCGTQLSVH--QNIR 364
           +VTK+LK++Q K L+KEV  +  K +K +M ++F  SKE++G   +    L     + ++
Sbjct: 147 VVTKSLKALQVKKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILK 206

Query: 363 ATMHDAYSETQCCHWHGDMSGH*GVTCLQHGNLTL*QIVDLVDLIVLDKEVENCRALVSG 184
            T     S+ +     G +S     T L     +  QI +++  +VLD E+   R+  SG
Sbjct: 207 ETCVKVLSKLKVATAEG-ISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSG 265



 Score = 40.4 bits (93), Expect(2) = 4e-08
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = -3

Query: 208 KLQSSGVGEFSHVLAGKDCYRILK----GREGPKESALVSLLVWELP*INECMPSRSTLL 41
           +++SSG GEFS +  G  CYR       G  GPK  A+ S+     P I +C P      
Sbjct: 258 EVRSSGSGEFSSIPIGAVCYRCTNKGGLGGGGPKIGAMASIPCGVCPRITQCTPDGIISP 317

Query: 40  INSVYYR*CLS 8
            +SV+Y  C +
Sbjct: 318 KSSVHYLLCFA 328


>gb|KRH01470.1| hypothetical protein GLYMA_18G279200 [Glycine max]
          Length = 268

 Score = 45.1 bits (105), Expect(3) = 6e-08
 Identities = 21/45 (46%), Positives = 32/45 (71%)
 Frame = -1

Query: 540 TMVTKALKSIQTKNLMKEVATVIYKSKKIFMTMKFNTSKEISGSV 406
           ++V K+LK +Q+KNL+KEV  +  K +K +M  +F  SKEI+G V
Sbjct: 86  SIVKKSLKLLQSKNLIKEVVNIQNKGRKHYMAAEFEPSKEITGGV 130



 Score = 34.3 bits (77), Expect(3) = 6e-08
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = -3

Query: 208 KLQSSGVGEFSHVLAGKDCYRILK---GREGPKESALVSLLVWELP*INECMPSRSTLLI 38
           +++S+G G+FS V  G+ CYR       R   K  A+ S+     P IN C P       
Sbjct: 198 EVKSTGFGDFSSVPVGRICYRCKSKGGNRGEQKPGAMASIPCGVCPRINFCTPDGIISPR 257

Query: 37  NSVYYR 20
             VYY+
Sbjct: 258 TCVYYQ 263



 Score = 27.7 bits (60), Expect(3) = 6e-08
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 380 FIKILGQQCMMHTLKLNVATGMGI*VVIRESHVFNMEIS 264
           FI ++   C+ +  +  VAT  G+    R+S VFN+E++
Sbjct: 141 FINLVKDVCLKYIFRQKVATRDGVMEWSRKSGVFNVEVT 179


>ref|XP_003551792.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Glycine
           max]
 ref|XP_014625767.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Glycine
           max]
 gb|KHN13797.1| DNA-directed RNA polymerase III subunit RPC6 [Glycine soja]
 gb|KRH01471.1| hypothetical protein GLYMA_18G279200 [Glycine max]
          Length = 239

 Score = 45.1 bits (105), Expect(3) = 6e-08
 Identities = 21/45 (46%), Positives = 32/45 (71%)
 Frame = -1

Query: 540 TMVTKALKSIQTKNLMKEVATVIYKSKKIFMTMKFNTSKEISGSV 406
           ++V K+LK +Q+KNL+KEV  +  K +K +M  +F  SKEI+G V
Sbjct: 57  SIVKKSLKLLQSKNLIKEVVNIQNKGRKHYMAAEFEPSKEITGGV 101



 Score = 34.3 bits (77), Expect(3) = 6e-08
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = -3

Query: 208 KLQSSGVGEFSHVLAGKDCYRILK---GREGPKESALVSLLVWELP*INECMPSRSTLLI 38
           +++S+G G+FS V  G+ CYR       R   K  A+ S+     P IN C P       
Sbjct: 169 EVKSTGFGDFSSVPVGRICYRCKSKGGNRGEQKPGAMASIPCGVCPRINFCTPDGIISPR 228

Query: 37  NSVYYR 20
             VYY+
Sbjct: 229 TCVYYQ 234



 Score = 27.7 bits (60), Expect(3) = 6e-08
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 380 FIKILGQQCMMHTLKLNVATGMGI*VVIRESHVFNMEIS 264
           FI ++   C+ +  +  VAT  G+    R+S VFN+E++
Sbjct: 112 FINLVKDVCLKYIFRQKVATRDGVMEWSRKSGVFNVEVT 150


>gb|EOY25790.1| DNA-directed RNA polymerase III subunit rpc6, putative isoform 1
           [Theobroma cacao]
 gb|EOY25791.1| DNA-directed RNA polymerase III subunit rpc6, putative isoform 1
           [Theobroma cacao]
          Length = 237

 Score = 42.0 bits (97), Expect(3) = 6e-08
 Identities = 19/48 (39%), Positives = 31/48 (64%)
 Frame = -1

Query: 555 VGILSTMVTKALKSIQTKNLMKEVATVIYKSKKIFMTMKFNTSKEISG 412
           + +   +VTK LKS+  KNL+KEV  +  + +K F++ +F  S EI+G
Sbjct: 50  INLPDNLVTKCLKSLLAKNLIKEVKNIQNRGRKHFISAEFEPSNEITG 97



 Score = 37.7 bits (86), Expect(3) = 6e-08
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = -3

Query: 208 KLQSSGVGEFSHVLAGKDCYRILKGREG----PKESALVSLLVWELP*INECMPSRSTLL 41
           +++SSG GEF+ +  GK CY+ + G+ G    PK   + S+     P I+ C P      
Sbjct: 167 EVKSSGTGEFASIPVGKVCYKCI-GKRGYGGEPKVGTMASIPCGVCPQISHCTPDGIISP 225

Query: 40  INSVYYR 20
              VYY+
Sbjct: 226 KTCVYYK 232



 Score = 27.3 bits (59), Expect(3) = 6e-08
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 380 FIKILGQQCMMHTLKLNVATGMGI*VVIRESHVFNMEIS 264
           +I +L +QC      L VAT  G+   I+ S+V  +E+S
Sbjct: 110 YINVLKEQCWRKIYGLKVATLEGVTDAIKRSNVSQIELS 148