BLASTX nr result
ID: Ophiopogon22_contig00013447
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon22_contig00013447
(1445 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AJE29370.1| putative gag protein [Coffea canephora] 86 4e-30
gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposo... 99 3e-29
gb|KZV56298.1| hypothetical protein F511_00295 [Dorcoceras hygro... 84 6e-25
gb|ESR55658.1| hypothetical protein CICLE_v10023471mg, partial [... 80 8e-24
gb|PKA62818.1| Retrovirus-related Pol polyprotein from transposo... 103 2e-22
dbj|GAU44261.1| hypothetical protein TSUD_400070 [Trifolium subt... 62 1e-21
gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subc... 88 2e-21
ref|XP_022876702.1| nucleolar protein 14-like [Olea europaea var... 85 2e-20
gb|PPD88818.1| hypothetical protein GOBAR_DD14224 [Gossypium bar... 65 2e-20
dbj|GAU39928.1| hypothetical protein TSUD_275280 [Trifolium subt... 67 2e-20
gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposo... 69 3e-20
gb|PKA58053.1| Retrovirus-related Pol polyprotein from transposo... 98 7e-20
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711... 70 1e-19
emb|CAN76612.1| hypothetical protein VITISV_040104 [Vitis vinifera] 95 1e-19
gb|PKA57601.1| Retrovirus-related Pol polyprotein from transposo... 99 1e-19
gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposo... 71 1e-19
gb|ABA94368.2| retrotransposon protein, putative, Ty1-copia subc... 64 2e-19
gb|PON41343.1| Zinc finger, CCHC-type [Parasponia andersonii] 66 2e-19
gb|AAO13467.1| Putative retrovirus-related pol polyprotein [Oryz... 84 2e-19
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi... 72 6e-19
>gb|AJE29370.1| putative gag protein [Coffea canephora]
Length = 433
Score = 86.3 bits (212), Expect(2) = 4e-30
Identities = 51/98 (52%), Positives = 69/98 (70%), Gaps = 3/98 (3%)
Frame = -2
Query: 1264 VERFDDKENFDLWQKRVK-TLVQQGLHKILQRKKAKPENMSDKN*AELDLKTASTIQLCL 1088
++ F+ +F LWQ+RVK LVQQGL K L K KPE+M+D ELD + ASTI+L +
Sbjct: 10 IQPFNGTTSFTLWQRRVKDVLVQQGLAKALNGKNKKPESMNDDEFEELDARCASTIRLYV 69
Query: 1087 ANEVMYNVMNE-DSAPDL*LRLE-AYITKSLSNKLYLK 980
A+ ++ NV++E DSA DL +LE Y+ KSLSNKL+LK
Sbjct: 70 ADNIINNVIDEKDSAADLWKKLEKLYLAKSLSNKLHLK 107
Score = 75.9 bits (185), Expect(2) = 4e-30
Identities = 38/81 (46%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Frame = -1
Query: 986 LKKQLYGLCMQEGTTVLEHVNFFKKIINELLAVNVKIDEKDKALILLSSLPGSYDHIVTT 807
LK+Q Y L M EG ++++H+N F I+++L V V I+E++KAL+LL+ + SY+ +VTT
Sbjct: 106 LKRQFYALKMVEGGSLMDHMNTFNGILDQLQKVGVDIEEENKALLLLTPVSDSYESVVTT 165
Query: 806 MLYGKETLILE-VTSTILSNE 747
+LYGK+TL E V S++L +E
Sbjct: 166 LLYGKDTLEFENVQSSLLDHE 186
Score = 53.5 bits (127), Expect(2) = 1e-07
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = -2
Query: 412 GIIKMVDGSTCRVIGTGTVKIKGKDGMVCALETIQYVPEVRYNLLSIRVLD-EGCRIQVQ 236
G + + DGSTC+V G G VKIK +G + +L + YVP++R NL+S+ LD EG
Sbjct: 309 GFMCLGDGSTCQVKGVGVVKIKMLNGEIRSLGGVAYVPKLRRNLISLNQLDSEGYHFSAA 368
Query: 235 QGIVTIS 215
G++ I+
Sbjct: 369 SGVLKIT 375
Score = 32.7 bits (73), Expect(2) = 1e-07
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 486 WILDSGSTVHVCSHKEIFDSFVARK 412
WILDSG HVCS + FD+ +K
Sbjct: 283 WILDSGCVSHVCSRLDYFDTLQRKK 307
>gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Apostasia shenzhenica]
Length = 365
Score = 99.0 bits (245), Expect(2) = 3e-29
Identities = 50/98 (51%), Positives = 72/98 (73%), Gaps = 1/98 (1%)
Frame = -1
Query: 959 MQEGTTVLEHVNFFKKIINELLAVNVKIDEKDKALILLSSLPGSYDHIVTTMLYGKETL- 783
M EG +LEH+N F K+I++L ++NVK++E+++AL+LLSSLP SYDH+VTT+LYGK+TL
Sbjct: 1 MSEGANLLEHMNVFSKMISQLRSINVKLEEENEALLLLSSLPKSYDHLVTTILYGKDTLK 60
Query: 782 ILEVTSTILSNEIKKGQSKLRRMHRTWWLREGRRKGKF 669
+ EV +T+LSNE++ QS + GR K KF
Sbjct: 61 VEEVNATLLSNEVRNKQSTGESLTVKTSQDRGRSKNKF 98
Score = 60.1 bits (144), Expect(2) = 3e-29
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 4/151 (2%)
Frame = -2
Query: 652 CHFCHKKDHFMKNC--KH*QEWLKKKGH-AAVADVVMSGIDDEV*MTFIDENKFSR*KLD 482
C++C K+ H+ ++C K Q+ KK G A+VA + D E TF + LD
Sbjct: 115 CYYCKKEGHWKRDCPKKSKQQQQKKSGEEASVASRLEK--DSETLCTFSCMDSSDSWILD 172
Query: 481 SRFW*YGSCMFP*GDI*LLCCEEGIIKMVDGSTCRVIGTGTVKIKGKDGMVCALETIQYV 302
S Y C F + G + M + S C+ +G GT+KIK DG++ L +++V
Sbjct: 173 SDCS-YHMCPFRDWFSTYSIHDGGRVIMGNNSECKSVGIGTIKIKMFDGVIRTLTEVRHV 231
Query: 301 PEVRYNLLSIRVLD-EGCRIQVQQGIVTISQ 212
P++R L+S+ LD GC GI+ + +
Sbjct: 232 PDLRKGLISLGTLDASGCTFIGSDGIIKVKK 262
>gb|KZV56298.1| hypothetical protein F511_00295 [Dorcoceras hygrometricum]
Length = 1309
Score = 83.6 bits (205), Expect(2) = 6e-25
Identities = 47/102 (46%), Positives = 72/102 (70%), Gaps = 3/102 (2%)
Frame = -1
Query: 1019 VYNKEPL-QQIVLKKQLYGLCMQEGTTVLEHVNFFKKIINELLAVNVKIDEKDKALILLS 843
+Y K L ++ LKK LY + ++EG + +H++ F KII +L V++KI ++D A+++LS
Sbjct: 90 LYLKRSLANRLYLKKSLYTIHLEEGKDLKKHMDEFNKIILDLKNVDIKITDEDCAILMLS 149
Query: 842 SLPGSYDHIVTTMLYGKETLIL-EVTSTILSNEI-KKGQSKL 723
SLP SY+H V TMLYGKETL + EV S + S E+ KK ++K+
Sbjct: 150 SLPRSYEHFVDTMLYGKETLTMAEVKSALNSKELHKKNETKM 191
Score = 61.2 bits (147), Expect(2) = 6e-25
Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 15/222 (6%)
Frame = -2
Query: 652 CHFCHKKDHFMKNCKH*Q----EWLKKKGHAAVADVVMSGIDDEV*MTFIDENKFSR*KL 485
C CHK+ HF K+C + E K G AAV V G + + NK +
Sbjct: 229 CFVCHKEGHFKKDCPDRRARNPERRKDPGDAAV---VSDGYESAEVLVVSRTNKQDCWVM 285
Query: 484 DSRFW*YGSCMFP*GDI*LLCCEEGIIKMVDGSTCRVIGTGTVKIKGKDGMVCALETIQY 305
DS + C L+ E G + + + C+V+G G+V +K DG V + ++Y
Sbjct: 286 DSGCS-FHMCPIKSWFQNLVEEESGHVLLGNNRECKVMGIGSVLLKMHDGCVRTITEVRY 344
Query: 304 VPEVRYNLLSIRVLD--------EGCRIQVQQGIVTI---SQENXXXXXXXXXXXXXXXX 158
VP++R NLLSI +LD EG ++V +G +T+ SQ+N
Sbjct: 345 VPDLRRNLLSIGMLDSKGFNVKIEGGTMKVIKGSLTVMRGSQDN----GLYILEASTVTG 400
Query: 157 XGNSVRGGVSRISLQWSSSQGGASRKTVTELEPN*SVAGKSK 32
N+ GG ++ L W G S K + EL ++ G+ K
Sbjct: 401 SSNAAVGGANKARL-WHLRLGHVSEKGLVELSKQ-NLLGRDK 440
Score = 62.8 bits (151), Expect = 1e-06
Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Frame = -2
Query: 1282 SATKLEVERFDDKENFDLWQKRVKT-LVQQGLHKILQRKKAKPENMSDKN*AELDLKTAS 1106
S TK ++E+F +F LW+ ++K LV GL L + + + + K E D K S
Sbjct: 2 STTKFDLEKFTGSNDFSLWRIKMKALLVHTGLGGAL-NPEPQDDTIDKKKIVETDSKAFS 60
Query: 1105 TIQLCLANEVMYNVMNEDSAPDL*LRLEA-YITKSLSNKLYLKNNCMDYACKKGQ 944
I LCL +EV+ V E SA L +LE+ Y+ +SL+N+LYLK + ++G+
Sbjct: 61 AILLCLGDEVLREVAEEVSALSLWNKLESLYLKRSLANRLYLKKSLYTIHLEEGK 115
>gb|ESR55658.1| hypothetical protein CICLE_v10023471mg, partial [Citrus clementina]
Length = 185
Score = 80.1 bits (196), Expect(2) = 8e-24
Identities = 42/84 (50%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Frame = -1
Query: 995 QIVLKKQLYGLCMQEGTTVLEHVNFFKKIINELLAVNVKIDEKDKALILLSSLPGSYDHI 816
++ LK+Q + L M EGT + +H++ I++EL A+ VKI++ DKAL LL SLP SY H+
Sbjct: 81 RLYLKEQFHTLRMAEGTKISDHLSVLNGIVSELEAIGVKIEDDDKALRLLWSLPTSYKHM 140
Query: 815 VTTMLYGKETLIL-EVTSTILSNE 747
+ T++YGKE + L EVTST+LS E
Sbjct: 141 LPTLMYGKEIVDLEEVTSTLLSEE 164
Score = 60.8 bits (146), Expect(2) = 8e-24
Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Frame = -2
Query: 1207 LVQQGLHKILQRKKAKPEN-------MSDKN*AELDLKTASTIQLCLANEVMYNVMNEDS 1049
L+Q GLHK L+ K + N +SD++ ELD + AS I+LCLA V+ NV N +
Sbjct: 2 LIQFGLHKALRGKPSPASNSGSGKASISDEDWEELDDRAASAIRLCLAKNVLANVGNIPT 61
Query: 1048 APDL*LRLE-AYITKSLSNKLYLK 980
A +L +LE Y TKS+SN+LYLK
Sbjct: 62 AKELWEKLEKLYQTKSISNRLYLK 85
>gb|PKA62818.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Apostasia shenzhenica]
Length = 163
Score = 103 bits (258), Expect = 2e-22
Identities = 53/116 (45%), Positives = 82/116 (70%), Gaps = 1/116 (0%)
Frame = -1
Query: 1013 NKEPLQQIVLKKQLYGLCMQEGTTVLEHVNFFKKIINELLAVNVKIDEKDKALILLSSLP 834
+K ++ +K+QLY L M EG +L+H+N F K+I++L +++VK++++D+AL+LLSSLP
Sbjct: 10 SKSLTNKLYMKRQLYSLRMSEGVNLLKHMNVFCKMISQLRSIDVKLEDEDEALLLLSSLP 69
Query: 833 GSYDHIVTTMLYGKETLILE-VTSTILSNEIKKGQSKLRRMHRTWWLREGRRKGKF 669
SYDH+VTT+LY K+TL +E V +T+LSNE++ QS + GR K KF
Sbjct: 70 KSYDHLVTTILYDKDTLKVEKVNATLLSNEVRNKQSTCESLTVKISQDRGRSKNKF 125
>dbj|GAU44261.1| hypothetical protein TSUD_400070 [Trifolium subterraneum]
Length = 635
Score = 62.0 bits (149), Expect(4) = 1e-21
Identities = 42/114 (36%), Positives = 67/114 (58%), Gaps = 7/114 (6%)
Frame = -1
Query: 986 LKKQLYGLCMQEGTTVLEHVNFFKKIINELLAVNVKIDEKDKALILLSSLPGSYDHIVTT 807
LK+QLY M E +V E ++ F KII++L ++VKI+++D+A LL +LP S +H+
Sbjct: 244 LKQQLYFFRMVENKSVSEQLSEFNKIIDDLANIDVKIEDEDQAFHLLCALPKSLEHLNDA 303
Query: 806 MLYGKETLIL--EVTSTILSNE-IKKGQSKL----RRMHRTWWLREGRRKGKFK 666
++YGKE I EV + + + E IK + K+ ++ T + R KGK K
Sbjct: 304 LIYGKEGTITLDEVQAALRTKELIKLNELKIDDSGEGLNVTRGRSDNRGKGKGK 357
Score = 52.4 bits (124), Expect(4) = 1e-21
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Frame = -2
Query: 1249 DKENFDLWQKRVKTLVQQGLHKILQRKKAKPENMSDKN*AELDLKTASTIQLCLANEVMY 1070
D D K L QQ + L+ A P N+SD AE+D K S I LCLA++V+
Sbjct: 155 DNTTLDTNVKVRAILTQQKCDEALKGVAAMPTNLSDTEKAEMDDKALSAIILCLADKVLR 214
Query: 1069 NVMNEDSAPDL*LRLE-AYITKSLSNKLYLK 980
V E SA + +L+ Y+TKSL++K LK
Sbjct: 215 EVAKEKSAAAMWAKLDKLYMTKSLAHKQCLK 245
Score = 33.5 bits (75), Expect(4) = 1e-21
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = -3
Query: 492 KNWILDSGSTVHVCSHKEIFDSFVARKG 409
K+W++DSG + H+C K+ F++ ++G
Sbjct: 424 KSWVMDSGCSYHICPSKKYFETLELKEG 451
Score = 25.4 bits (54), Expect(4) = 1e-21
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -2
Query: 652 CHFCHKKDHFMKNC 611
C+ CH+ HF K+C
Sbjct: 375 CYHCHEPGHFKKDC 388
>gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 424
Score = 87.8 bits (216), Expect(2) = 2e-21
Identities = 38/94 (40%), Positives = 71/94 (75%)
Frame = -1
Query: 1013 NKEPLQQIVLKKQLYGLCMQEGTTVLEHVNFFKKIINELLAVNVKIDEKDKALILLSSLP 834
+K ++ LK+QLYGL MQE + + +HV+ F +++ +L ++VK+D++DKA+ILL SLP
Sbjct: 95 SKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLP 154
Query: 833 GSYDHIVTTMLYGKETLILEVTSTILSNEIKKGQ 732
SY+H+VT + +GK+T+ E+ S++L+ ++++ +
Sbjct: 155 PSYEHVVTILTHGKDTIKTEIISSLLARDLRRSK 188
Score = 45.1 bits (105), Expect(2) = 2e-21
Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 13/145 (8%)
Frame = -2
Query: 652 CHFCHKKDHFMKNCKH*QEWLKKKGHAAVADVVMSGIDDEV*----MTFIDENKFSR*KL 485
C+ CH+ H +NC L KK +A + G D + +T +E L
Sbjct: 223 CYKCHEFGHIRRNCP-----LLKKRKDGIASLAARGDDSDSSSHEILTVSNEKSGEAWML 277
Query: 484 DS---------RFW*YGSCMFP*GDI*LLCCEEGIIKMVDGSTCRVIGTGTVKIKGKDGM 332
DS R W + GD G++ + D ++ RV+G G VK K DG
Sbjct: 278 DSASSYHVTSKREW---FSSYKSGDF-------GVVYLGDDTSYRVVGVGDVKFKMYDGN 327
Query: 331 VCALETIQYVPEVRYNLLSIRVLDE 257
L +++VP +R +L+S+ L E
Sbjct: 328 EVLLSDVRHVPGLRKSLISLGSLHE 352
Score = 75.5 bits (184), Expect = 6e-11
Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 2/104 (1%)
Frame = -2
Query: 1285 TSATKLEVERFDDKENFDLWQKRVKTLV-QQGLHKILQRKKAKPENMSDKN*AELDLKTA 1109
T +K EV +FD NF LWQ R+K L+ QQG+ K L+ + PE M E+ + A
Sbjct: 4 TVVSKFEVVKFDGTGNFVLWQMRLKDLLAQQGISKALE--ETMPEKMDAGKWEEMKAQAA 61
Query: 1108 STIQLCLANEVMYNVMNEDSAPDL*LRLEA-YITKSLSNKLYLK 980
+TI+L L++ VMY VM+E ++ ++ ++L + Y++KSL++KLYLK
Sbjct: 62 ATIRLSLSDSVMYQVMDEKTSKEIWVKLTSLYMSKSLTSKLYLK 105
>ref|XP_022876702.1| nucleolar protein 14-like [Olea europaea var. sylvestris]
Length = 1147
Score = 84.7 bits (208), Expect(2) = 2e-20
Identities = 51/109 (46%), Positives = 70/109 (64%), Gaps = 8/109 (7%)
Frame = -2
Query: 1282 SATKLEVERFDDKENFDLWQKRVKTL-VQQGLHKILQRKKAKP------ENMSDKN*AEL 1124
S+ K ++E+FD K F LWQ +V+ L +Q GLHK L+RK K +MS+++ EL
Sbjct: 2 SSLKYDIEKFDRKIKFGLWQVQVRDLLIQTGLHKALKRKSTKSYCNEAKSSMSNEDWEEL 61
Query: 1123 DLKTASTIQLCLANEVMYNVMNEDSAPDL*LRL-EAYITKSLSNKLYLK 980
DLK AS I+LCLA V+ N+ + +L +L E Y TKSLSN+LYLK
Sbjct: 62 DLKAASIIRLCLAKNVLTNIHRISATKELWEKLEELYQTKSLSNRLYLK 110
Score = 45.1 bits (105), Expect(2) = 2e-20
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = -1
Query: 995 QIVLKKQLYGLCMQEGTTVLEHVNFFKKIINELLAVNVKIDEKDKALILLSSLPGSYDHI 816
++ LK+Q + L ++ GT + H++ K I+ EL A+ VKID++DK
Sbjct: 106 RLYLKEQFHSLLLEAGTKISNHLSVLKGIVLELEAIGVKIDDEDK--------------- 150
Query: 815 VTTMLYGKETL-ILEVTSTILSNEIKKG 735
GKET+ +EV S ++S E + G
Sbjct: 151 ------GKETVSFVEVKSNLISEERRLG 172
>gb|PPD88818.1| hypothetical protein GOBAR_DD14224 [Gossypium barbadense]
Length = 718
Score = 65.5 bits (158), Expect(2) = 2e-20
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = -1
Query: 1010 KEPLQQIVLKKQLYGLCMQEGTTVLEHVNFFKKIINELLAVNVKIDEKDKALILLSSLPG 831
K ++VLK++L+ M EG + +H++ F ++N+L V V ID++D+A++LL SLP
Sbjct: 362 KSLANRLVLKQRLFTFRMNEGELLKDHISQFITLLNDLKNVEVHIDDEDQAMLLLCSLPS 421
Query: 830 SYDHIVTTMLYGKETLILE-VTSTILSNE 747
SY T++YGK+ L E V +LS +
Sbjct: 422 SYKSFKETLIYGKDKLSFEDVKGHLLSRD 450
Score = 64.3 bits (155), Expect(2) = 2e-20
Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 6/155 (3%)
Frame = -2
Query: 658 KVCHFCHKKDHFMKNCKH*QEWLKKKGHAAVADVVMSGIDDEV*MTFIDENKFSR*KLDS 479
K C +C K H + + K+ + DVV + + DE F+ + KL S
Sbjct: 477 KRCRYCKKLGHVKADYYKLRN--KRAAESNEEDVVGANLVDEGGDDFLLVSTSDNSKLTS 534
Query: 478 RFW*YGSC---MFP*GD--I*LLCCEEGIIKMVDGSTCRVIGTGTVKIKGKDGMVCALET 314
+ C M+P + E G++ M + S+ ++IG GTVKI+ DG + L
Sbjct: 535 EWILDSGCSFHMYPNREWFSTYSSVEGGVVHMGNDSSSKIIGIGTVKIRIHDGTIKTLSD 594
Query: 313 IQYVPEVRYNLLSIRVLD-EGCRIQVQQGIVTISQ 212
++YVP++R NL+S+ +LD +GCRI ++ + +S+
Sbjct: 595 VRYVPDLRKNLISLSILDLKGCRINIESSNIKVSR 629
>dbj|GAU39928.1| hypothetical protein TSUD_275280 [Trifolium subterraneum]
Length = 580
Score = 66.6 bits (161), Expect(2) = 2e-20
Identities = 36/86 (41%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Frame = -1
Query: 989 VLKKQLYGLCMQEGTTVLEHVNFFKKIINELLAVNVKIDEKDKALILLSSLPGSYDHIVT 810
+LK+QLY M E +V+E + F KII++L +NVKI+++D+A LL +LP S +++
Sbjct: 101 LLKQQLYFFRMVENKSVVEQLTKFNKIIDDLANINVKIEDEDQAFHLLCALPKSLENLKD 160
Query: 809 TMLYGKETLIL--EVTSTILSNEIKK 738
+LYGKE I EV S +++ E+ K
Sbjct: 161 ALLYGKEGTITLDEVQSALITKELTK 186
Score = 62.8 bits (151), Expect(2) = 2e-20
Identities = 35/101 (34%), Positives = 63/101 (62%), Gaps = 2/101 (1%)
Frame = -2
Query: 1276 TKLEVERFDDKENFDLWQKRVKT-LVQQGLHKILQRKKAKPENMSDKN*AELDLKTASTI 1100
+K E+E+F +F LW+ +V+ L QQ + ++ + P N+S++ E+D K S I
Sbjct: 3 SKWEIEKFTGSNDFGLWKVKVRAILTQQKCDEAVKGEAGMPANLSNEEKTEMDKKAHSII 62
Query: 1099 QLCLANEVMYNVMNEDSAPDL*LRLEA-YITKSLSNKLYLK 980
LCL+++V+ V E +A ++ +L++ Y+TKSL++K LK
Sbjct: 63 ILCLSDKVLREVAKEKTAVEMWTKLDSLYMTKSLAHKQLLK 103
>gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 609
Score = 68.9 bits (167), Expect(2) = 3e-20
Identities = 35/90 (38%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Frame = -1
Query: 1010 KEPLQQIVLKKQLYGLCMQEGTTVLEHVNFFKKIINELLAVNVKIDEKDKALILLSSLPG 831
K +++LK++L+GL M+E T + +H++ I+ EL ++VKI+++D A+ILL+SLP
Sbjct: 30 KSICNKLLLKRRLFGLHMKEDTPLQDHLDELNSILMELRYIDVKIEDEDAAMILLASLPP 89
Query: 830 SYDHIVTTMLYGKETLIL-EVTSTILSNEI 744
SY+ V ++ GKE + + EV S++ S E+
Sbjct: 90 SYESFVNSLTVGKECITMEEVKSSLHSREL 119
Score = 60.1 bits (144), Expect(2) = 3e-20
Identities = 43/157 (27%), Positives = 83/157 (52%), Gaps = 5/157 (3%)
Frame = -2
Query: 667 SPSKVCHFCHKKDHFMKNCKH*QEWLKKKGHAAVADVVM--SGIDDEV*MTFIDENKFSR 494
+P +C++C + H+ K+C KK+ +VA S ++E+ ++ +D ++ S
Sbjct: 158 NPRDICNYCKEPGHWKKDCP------KKRNQKSVAVAAQEDSSFENELVLSIVDNHQHSA 211
Query: 493 *K--LDSRFW*YGSCMFP*GDI*LLCCEEGIIKMVDGSTCRVIGTGTVKIKGKDGMVCAL 320
+ LDS Y C + G + M + C+ IG GT++IK DG++ L
Sbjct: 212 EQWVLDSGCS-YHMCPNRSWFLTYEKKSGGDVFMGNDMACKTIGIGTIQIKMHDGVIRTL 270
Query: 319 ETIQYVPEVRYNLLSIRVL-DEGCRIQVQQGIVTISQ 212
+++VP+++ NL+S+ VL +G + V+ G++ IS+
Sbjct: 271 TEVRHVPDLKKNLISVGVLHTKGFKCNVEGGVMEISK 307
>gb|PKA58053.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Apostasia shenzhenica]
Length = 198
Score = 97.8 bits (242), Expect = 7e-20
Identities = 48/96 (50%), Positives = 72/96 (75%), Gaps = 1/96 (1%)
Frame = -1
Query: 1013 NKEPLQQIVLKKQLYGLCMQEGTTVLEHVNFFKKIINELLAVNVKIDEKDKALILLSSLP 834
+K ++ +K+QLY L M E +LEH+N F KII++ +++VK++E+DK L+LLS LP
Sbjct: 93 SKSLTNKLYMKRQLYSLRMSEEADLLEHMNIFSKIISQFHSIDVKLEEEDKTLLLLSLLP 152
Query: 833 GSYDHIVTTMLYGKETLILE-VTSTILSNEIKKGQS 729
SYDH+VTT+LY K+TL +E V +T+LSNE++ QS
Sbjct: 153 KSYDHLVTTILYDKDTLKVEKVNATLLSNEVQNKQS 188
Score = 87.8 bits (216), Expect = 3e-16
Identities = 47/102 (46%), Positives = 75/102 (73%), Gaps = 3/102 (2%)
Frame = -2
Query: 1276 TKLEVERFDDKENFDLWQKRVKTLVQQG--LHKILQRKKAKPENMSDKN*AELDLKTAST 1103
TK E E+F+ K++F +WQ+RVK ++ Q H +L R+KA+ ++++ EL LK +ST
Sbjct: 4 TKFEEEKFNGKKDFGIWQRRVKAILVQNDLYHALLGREKAR--KITNEECEELYLKASST 61
Query: 1102 IQLCLANEVMYNVMNEDSAPDL*LRLEA-YITKSLSNKLYLK 980
IQLCLA+EV+YN+ + +++ DL +LE Y++KSL+NKLY+K
Sbjct: 62 IQLCLADEVLYNIFDVETSVDLWRKLEKFYMSKSLTNKLYMK 103
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 69.7 bits (169), Expect(2) = 1e-19
Identities = 37/91 (40%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Frame = -1
Query: 1010 KEPLQQIVLKKQLYGLCMQEGTTVLEHVNFFKKIINELLAVNVKIDEKDKALILLSSLPG 831
K +++LK++L+GL M EGT + EH+ ++ EL ++VKI+++D ALILL SLP
Sbjct: 92 KSLTNKLLLKQRLFGLRMAEGTQLREHLEQLNTLLLELRNIDVKIEDEDAALILLVSLPM 151
Query: 830 SYDHIVTTMLYGKETLIL-EVTSTILSNEIK 741
S+++ V + + GK+T+ L EV S + S E++
Sbjct: 152 SFENFVQSFIVGKDTVSLEEVRSALHSRELR 182
Score = 57.4 bits (137), Expect(2) = 1e-19
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 1/138 (0%)
Frame = -2
Query: 670 SSPSKVCHFCHKKDHFMKNC-KH*QEWLKKKGHAAVADVVMSGIDDEV*MTFIDENKFSR 494
+ P VC++C +K H+ +C K ++ K+ AAVA+ + +D + +
Sbjct: 219 AKPDDVCNYCKEKGHWKFDCPKKKKQSEKQSVSAAVAEEDTNSEEDIALVADEHTHHSDV 278
Query: 493 *KLDSRFW*YGSCMFP*GDI*LLCCEEGIIKMVDGSTCRVIGTGTVKIKGKDGMVCALET 314
LDS Y C + G I M + S C+V+GTG++KI+ DG C L
Sbjct: 279 WVLDSGAS-YHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNE 337
Query: 313 IQYVPEVRYNLLSIRVLD 260
+++VP + NL+S+ +LD
Sbjct: 338 VRHVPLMTKNLISLSLLD 355
Score = 67.0 bits (162), Expect = 7e-08
Identities = 45/119 (37%), Positives = 69/119 (57%), Gaps = 5/119 (4%)
Frame = -2
Query: 1282 SATKLEVERFDDKENFDLWQKRVKTLV-QQGLHKILQRKK---AKPENMSDKN*AELDLK 1115
SA +++++F + +F LWQ +++ L+ QQG L + K PE A L+ K
Sbjct: 2 SALNVKIDKFTGRNSFSLWQIKMRALLKQQGFWAPLSKDKNAVVTPEM------AILEEK 55
Query: 1114 TASTIQLCLANEVMYNVMNEDSAPDL*LRLEA-YITKSLSNKLYLKNNCMDYACKKGQQ 941
STI LCLA++V+ V +E++A L L+LE+ Y+TKSL+NKL LK +G Q
Sbjct: 56 AHSTIMLCLADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQ 114
>emb|CAN76612.1| hypothetical protein VITISV_040104 [Vitis vinifera]
Length = 127
Score = 95.1 bits (235), Expect = 1e-19
Identities = 53/103 (51%), Positives = 78/103 (75%), Gaps = 2/103 (1%)
Frame = -2
Query: 1282 SATKLEVERFDDKENFDLWQKRVKTL-VQQGLHKILQRKKAKPENMSDKN*AELDLKTAS 1106
S+ K +V +FD NFDLWQ+RVK L VQQG+ K L K+ PE M++ + +L++K A+
Sbjct: 5 SSAKFDVVKFDGFGNFDLWQRRVKDLLVQQGMVKALYGKQ--PEGMNNMDWKDLEVKVAA 62
Query: 1105 TIQLCLANEVMYNVMNEDSAPDL*LRLEA-YITKSLSNKLYLK 980
TI+LCLA++VMY+VM+E+S + L+LE+ Y++K L+NKLYLK
Sbjct: 63 TIRLCLADDVMYHVMDEESPTAIWLKLESQYMSKLLTNKLYLK 105
>gb|PKA57601.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Apostasia shenzhenica]
Length = 249
Score = 98.6 bits (244), Expect = 1e-19
Identities = 56/113 (49%), Positives = 79/113 (69%), Gaps = 3/113 (2%)
Frame = -2
Query: 1276 TKLEVERFDDKENFDLWQKRVKT-LVQQGLHK-ILQRKKAKPENMSDKN*AELDLKTAST 1103
TK EVE+FD K++F +WQ RVK LVQ LH +L+RK A+ M+D+ ELDLK ST
Sbjct: 59 TKFEVEKFDHKKDFGIWQLRVKAILVQNDLHHALLERKNAR--KMTDEEWKELDLKALST 116
Query: 1102 IQLCLANEVMYNVMNEDSAPDL*LRLEA-YITKSLSNKLYLKNNCMDYACKKG 947
IQLCLA+EV+YN+ + +++ DL +LE Y++KSL+NKLY+K + +G
Sbjct: 117 IQLCLADEVLYNISDVETSVDLWRKLEKFYMSKSLTNKLYMKRQLYNLRMSEG 169
Score = 94.7 bits (234), Expect = 3e-18
Identities = 45/96 (46%), Positives = 69/96 (71%), Gaps = 1/96 (1%)
Frame = -1
Query: 1013 NKEPLQQIVLKKQLYGLCMQEGTTVLEHVNFFKKIINELLAVNVKIDEKDKALILLSSLP 834
+K ++ +K+QLY L M EG +LEH+N F K+I++ ++ VK+ EKD L+ LS LP
Sbjct: 148 SKSLTNKLYMKRQLYNLRMSEGANLLEHMNVFSKMISQFHSIEVKLQEKDVILLFLSLLP 207
Query: 833 GSYDHIVTTMLYGKETL-ILEVTSTILSNEIKKGQS 729
SY+H++ T+LYGK+TL + EV +T+LSNE++ QS
Sbjct: 208 KSYNHLIITILYGKDTLKVEEVNATLLSNEVRNKQS 243
>gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 593
Score = 71.2 bits (173), Expect(2) = 1e-19
Identities = 36/91 (39%), Positives = 63/91 (69%), Gaps = 1/91 (1%)
Frame = -1
Query: 1010 KEPLQQIVLKKQLYGLCMQEGTTVLEHVNFFKKIINELLAVNVKIDEKDKALILLSSLPG 831
K +++LK++L+GL M+E T + +H++ I+ EL +NVKI+++D A+ILL+SLP
Sbjct: 82 KSICNKLLLKRRLFGLHMKEDTPLQDHLDELNSILMELRDINVKIEDEDAAMILLASLPP 141
Query: 830 SYDHIVTTMLYGKETLIL-EVTSTILSNEIK 741
SY+ V ++ GKE + + EV S++ S E++
Sbjct: 142 SYESFVNSLSVGKECITMEEVKSSLHSRELR 172
Score = 55.5 bits (132), Expect(2) = 1e-19
Identities = 42/160 (26%), Positives = 83/160 (51%), Gaps = 8/160 (5%)
Frame = -2
Query: 667 SPSKVCHFCHKKDHFMKNCKH*QEWLKKKGHAAVADVVM--SGIDDEV*MTFIDENKF-- 500
+P +C++C + H+ K+C KK+ +V S ++E+ ++ +D ++
Sbjct: 210 NPRDICNYCKEPGHWKKDCP------KKRNQKSVVVAAQEDSSFENELVLSIVDNHQHFV 263
Query: 499 SR*KLDSRFW*YGSCMFP*GDI*LLCCEE---GIIKMVDGSTCRVIGTGTVKIKGKDGMV 329
+ LDS Y C L E+ G + M + C+ I GT++IK DG++
Sbjct: 264 EQWVLDSGCS-YHMCP---NRSWFLTYEKKFGGDVFMGNDMACKTISIGTIQIKMHDGVI 319
Query: 328 CALETIQYVPEVRYNLLSIRVLD-EGCRIQVQQGIVTISQ 212
L +++VP+++ NL+S+ VLD +G + V+ G++ I++
Sbjct: 320 RTLTEVRHVPDLKKNLISVGVLDTKGFKCNVEGGVMEINK 359
>gb|ABA94368.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 375
Score = 64.3 bits (155), Expect(2) = 2e-19
Identities = 29/69 (42%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Frame = -1
Query: 935 EHVNFFKKIINELLAVNVKIDEKDKALILLSSLPGSYDHIVTTMLYGKETL-ILEVTSTI 759
+HV+ F + + +L ++VK+D+KDKA+ILL SLP SY+H+VTT+ +GK T+ E+ S++
Sbjct: 106 KHVDVFNQWVVDLSKLDVKLDDKDKAIILLCSLPPSYEHVVTTLTHGKGTVKTEEIISSL 165
Query: 758 LSNEIKKGQ 732
L+ ++++ +
Sbjct: 166 LARDLRRSK 174
Score = 62.0 bits (149), Expect(2) = 2e-19
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
Frame = -2
Query: 1285 TSATKLEVERFDDKENFDLWQKRVKTLV-QQGLHKILQRKKAKPENMSDKN*AELDLKTA 1109
T +K EV +FD NF L Q R+K L+ QQG+ K L+ + PE M D E+ + A
Sbjct: 4 TVVSKFEVVKFDGTRNFVLSQMRLKDLLAQQGISKALE--ETMPEKMDDDKWDEMKAQAA 61
Query: 1108 STIQLCLANEVMYNVMNEDSAPDL*LRLEA-YITKSLSNKLYLKNN 974
+TI+L L++ VMY VM+E S ++ +L + Y++KSL+ + L+ +
Sbjct: 62 ATIRLRLSDFVMYQVMDEKSPKEIWDKLASLYMSKSLTKESNLRKH 107
>gb|PON41343.1| Zinc finger, CCHC-type [Parasponia andersonii]
Length = 297
Score = 66.2 bits (160), Expect(2) = 2e-19
Identities = 32/93 (34%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Frame = -1
Query: 1010 KEPLQQIVLKKQLYGLCMQEGTTVLEHVNFFKKIINELLAVNVKIDEKDKALILLSSLPG 831
K ++ +K++L+ M E ++ + ++ F KII++L + +K++++DKALILL++LP
Sbjct: 3 KSLANRLHMKQRLHSFKMNEEKSISDQIDKFNKIIDDLENIEIKLEDEDKALILLNALPK 62
Query: 830 SYDHIVTTMLYGKETLIL--EVTSTILSNEIKK 738
+Y+H MLYG+E I EV S + + E+ +
Sbjct: 63 AYEHFKDAMLYGREQTITLDEVQSAVKAKELPR 95
Score = 60.1 bits (144), Expect(2) = 2e-19
Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 5/152 (3%)
Frame = -2
Query: 652 CHFCHKKDHFMKNC----KH*QEWLKKKGHAAVADVVMSGIDDEV*MTFIDENKFSR*KL 485
C CHK+ HF ++C K E K G A+VA G D + DE+ +
Sbjct: 136 CFHCHKEGHFKRDCPDRKKKVHEKPKDPGEASVAS---DGYDSAEVLVVTDEDSSKEWIM 192
Query: 484 DSRFW*YGSCMFP*GDI*LLCCEEGIIKMVDGSTCRVIGTGTVKIKGKDGMVCALETIQY 305
DS + C L + G + + + C+V G G+V+I+ DGM L+ ++Y
Sbjct: 193 DSGCS-FHMCPTKSWFENLEKTDGGSVLLGNNKPCKVAGIGSVRIRMFDGMERILQQVRY 251
Query: 304 VPEVRYNLLSIRVLD-EGCRIQVQQGIVTISQ 212
VPE++ NL+S+ +LD G + + G + +S+
Sbjct: 252 VPELKRNLISLGMLDMNGYSFKAEHGSLKVSK 283
>gb|AAO13467.1| Putative retrovirus-related pol polyprotein [Oryza sativa Japonica
Group]
gb|ABF94286.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 556
Score = 83.6 bits (205), Expect(2) = 2e-19
Identities = 38/95 (40%), Positives = 72/95 (75%), Gaps = 1/95 (1%)
Frame = -1
Query: 1013 NKEPLQQIVLKKQLYGLCMQEGTTVLEHVNFFKKIINELLAVNVKIDEKDKALILLSSLP 834
+K ++ LK+QLYGL MQE + + +HV+ F +++ +L ++VK+D++DKA+ILL SLP
Sbjct: 226 SKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLP 285
Query: 833 GSYDHIVTTMLYGKETL-ILEVTSTILSNEIKKGQ 732
S++H+VTT+ +GK+T+ E+ S++L+ ++++ +
Sbjct: 286 PSFEHVVTTLTHGKDTVKTEEIISSLLARDLRRSK 320
Score = 42.4 bits (98), Expect(2) = 2e-19
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Frame = -2
Query: 652 CHFCHKKDHFMKNCKH*QEWLKKKGHAAVADVVMSGIDDEV*----MTFIDENKFSR*KL 485
C+ CH+ H +NC L KK +A + G + + +T +E L
Sbjct: 355 CYKCHEFGHIRRNCP-----LLKKRKGGIASLAARGDNSDSSSHEILTVSNEKSGEAWML 409
Query: 484 DSRF-------W*YGSCMFP*GDI*LLCCEEGIIKMVDGSTCRVIGTGTVKIKGKDGMVC 326
DS W + S + GD G++ + + ++ RVIG G +K K DG
Sbjct: 410 DSASSYHVTSKWEWFSS-YKSGDF-------GVVYLGNDTSYRVIGVGDIKFKMYDGNEV 461
Query: 325 ALETIQYVPEVRYNLLSIRVLDE 257
L +++VP +R +L+S+ L E
Sbjct: 462 LLSDVRHVPGLRKSLISLGSLHE 484
>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 838
Score = 71.6 bits (174), Expect(2) = 6e-19
Identities = 38/90 (42%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Frame = -1
Query: 995 QIVLKKQLYGLCMQEGTTVLEHVNFFKKIINELLAVNVKIDEKDKALILLSSLPGSYDHI 816
+I LK++LYG M + T+ E+VN F K+I++L V V + ++D+A++LL SLP +D +
Sbjct: 112 RIYLKQRLYGYKMSDSMTIEENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQL 171
Query: 815 VTTMLYGKETLIL-EVTSTILSNEIKKGQS 729
T+ YGK TL L E+T I S ++ G S
Sbjct: 172 KDTLKYGKTTLALDEITGAIRSKVLELGAS 201
Score = 52.8 bits (125), Expect(2) = 6e-19
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 8/159 (5%)
Frame = -2
Query: 670 SSPSKVCHFCHKKDHFMKNCKH*QEWLKKKGHAAVADV--VMSGIDDEV*MTFIDENKFS 497
S KVC C K+ HF K C +E KK ++ + V+ D + +E+
Sbjct: 238 SREKKVCWVCGKEGHFKKQCYVWKEKNKKGNNSEKGESSNVIGQAADAAALAVREESNAD 297
Query: 496 R*KLDSRFW*YGSCMF---P*GDI*LLCCEE--GIIKMVDGSTCRVIGTGTVKIKGKDGM 332
++D+ + C F P D + E G +KM + + + G G+++I+ D
Sbjct: 298 NQEVDNEWIMDTGCSFHMTPRRDWFVEFDESQTGRVKMANQTYSEIKGIGSIRIQNDDNT 357
Query: 331 VCALETIQYVPEVRYNLLSIRVL-DEGCRIQVQQGIVTI 218
L+ ++YVP + NL+S+ L D+GC Q + G + +
Sbjct: 358 TVLLKNVRYVPSMSKNLISMGTLEDQGCWFQSKAGTLKV 396