BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00011181
         (2482 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020258675.1| protein RNA-directed DNA methylation 3, part...  1031   0.0  
gb|ONK75729.1| uncharacterized protein A4U43_C03F19930 [Asparagu...  1024   0.0  
ref|XP_010933206.1| PREDICTED: protein RNA-directed DNA methylat...   738   0.0  
ref|XP_010933194.1| PREDICTED: protein RNA-directed DNA methylat...   738   0.0  
ref|XP_010933212.1| PREDICTED: protein RNA-directed DNA methylat...   736   0.0  
ref|XP_010933199.1| PREDICTED: protein RNA-directed DNA methylat...   736   0.0  
ref|XP_008794002.1| PREDICTED: protein RNA-directed DNA methylat...   724   0.0  
ref|XP_020091605.1| protein RNA-directed DNA methylation 3 isofo...   696   0.0  
ref|XP_020091606.1| protein RNA-directed DNA methylation 3 isofo...   695   0.0  
ref|XP_020091604.1| protein RNA-directed DNA methylation 3 isofo...   695   0.0  
ref|XP_020091602.1| protein RNA-directed DNA methylation 3 isofo...   695   0.0  
gb|OAY66311.1| Protein RNA-directed DNA methylation 3 [Ananas co...   687   0.0  
gb|PAN18741.1| hypothetical protein PAHAL_C02415 [Panicum hallii]     648   0.0  
gb|PAN18742.1| hypothetical protein PAHAL_C02415 [Panicum hallii]     648   0.0  
gb|AQK94721.1| Protein RNA-directed DNA methylation 3 [Zea mays]      630   0.0  
ref|XP_004961584.1| protein RNA-directed DNA methylation 3 [Seta...   644   0.0  
ref|XP_020682212.1| protein RNA-directed DNA methylation 3 [Dend...   642   0.0  
ref|XP_008656431.1| protein RNA-directed DNA methylation 3 isofo...   631   0.0  
ref|XP_020587140.1| protein RNA-directed DNA methylation 3 [Phal...   639   0.0  
ref|XP_009409884.1| PREDICTED: protein RNA-directed DNA methylat...   635   0.0  

>ref|XP_020258675.1| protein RNA-directed DNA methylation 3, partial [Asparagus
            officinalis]
          Length = 1734

 Score = 1031 bits (2665), Expect = 0.0
 Identities = 558/885 (63%), Positives = 617/885 (69%), Gaps = 105/885 (11%)
 Frame = +1

Query: 127  RSEGKEFRSAGKPQYLPFLVKXXXXXXXXXXXXIKDRYGRGSEYAVYDEDPKECDDGVSV 306
            +   K+F+ AGK  YLP  VK            IKDRYG+GSEY VYDEDPK+ +  VSV
Sbjct: 46   KESSKDFKGAGKSPYLPIFVKEEEVSGDELEELIKDRYGKGSEYVVYDEDPKQDNAAVSV 105

Query: 307  ELSAEDPKIWRVKCMVGREQQMVLSLMHKYADLQRLGTKMEIISAFTLEHVKGYVYIEAD 486
            E  A DP IW+VKCMVG+EQQ+VLSLMHKYADLQRLGTKM+IISAFTLEHVKGYVYIEAD
Sbjct: 106  EHLAGDPNIWKVKCMVGKEQQIVLSLMHKYADLQRLGTKMDIISAFTLEHVKGYVYIEAD 165

Query: 487  KACDIVEACKGFFNIYATRMGLVPSNDIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 666
            KACD+VEACKGFFNIY+TRMGLVP+ +IPHLLS RNK C +SKGTWVRMK+GNYKGDLGQ
Sbjct: 166  KACDVVEACKGFFNIYSTRMGLVPNTEIPHLLSIRNKACILSKGTWVRMKSGNYKGDLGQ 225

Query: 667  VVDYDEARKRATIKLVPRIDLQAIAKKYGGGVSLKEAAVPAPRLISSQELEHFRSHIEIR 846
            VVDYD+ RK+ATIKLVPRIDLQAIAKK+GGGVSLKEAAVP+PRLISS ELE FRSHIEIR
Sbjct: 226  VVDYDDMRKKATIKLVPRIDLQAIAKKFGGGVSLKEAAVPSPRLISSHELEQFRSHIEIR 285

Query: 847  RDRHSGEYFEILDGLMLKDGFLYKKVSIASIVFWGVQPSKDELLKFTEMSKADEEDVSWL 1026
            RDRHSGE FEILDGLMLKDG+LYKKVSIASIV+WGV+PSKDELLKFTEMSK +EEDVSWL
Sbjct: 286  RDRHSGECFEILDGLMLKDGYLYKKVSIASIVYWGVEPSKDELLKFTEMSKPEEEDVSWL 345

Query: 1027 STVYNVRKKMKSSEAADSKGASELGNGFILHDLVLFGRKGFGVXXXXXXXXXXXXXXXX- 1203
            S+VYNVRKK+K S+ +D KG+SE GN F LHDLVLFGRK FGV                 
Sbjct: 346  SSVYNVRKKIKPSKDSDLKGSSEKGNSFNLHDLVLFGRKAFGVIIDMGKDGTMKVLRGDK 405

Query: 1204 EGQEVMTIKSEDIKGHCVDKMFTASDRHRKTIYINDTVKVLKGPLEGREGVVRHMYKGTL 1383
            EGQEV+T+K+E IK  CVDKMFTASDRHRKTI IND +KVL+GPLEGR+G   HMYKGTL
Sbjct: 406  EGQEVITVKAEAIKSQCVDKMFTASDRHRKTICINDIIKVLEGPLEGRQGTACHMYKGTL 465

Query: 1384 FIYDENQEENSGIFCAKSDLCENITPPKDSSFRKGGNKSSSSFNQSPVRSCEQEDSSYTF 1563
            FIYDE+QE NSGIFC KSDLCE ITP KDS F KG NK+SSSF+Q PV S EQEDSS TF
Sbjct: 466  FIYDESQEGNSGIFCTKSDLCEKITPAKDS-FGKG-NKASSSFSQDPVISSEQEDSSCTF 523

Query: 1564 SRNRHSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFLSI 1743
            SRNR  ESNQ FS+GQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITV+EQ LS 
Sbjct: 524  SRNRRRESNQIFSVGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVDEQLLSD 583

Query: 1744 PNIKRDFAAEMPTDIFGTQERFTGGLSGNGEQTVVTSSWDGASSSWQALSTSTL-FGNNN 1920
            PN+KRD A               GGLSGNGEQT+  SSWDG SSSWQ LSTS   F  NN
Sbjct: 584  PNLKRDTAG--------------GGLSGNGEQTLGASSWDGGSSSWQDLSTSAFSFSANN 629

Query: 1921 DQKT------------------EQEQG-----------------ADPWGSKVSLAAGDRE 1995
            DQK+                  +QEQ                  ADPWGSK SLAA D  
Sbjct: 630  DQKSGQEQGADPWAGRVSHVAGDQEQSDPWVSKASITAGADGGSADPWGSKASLAARDDG 689

Query: 1996 QGADPWGSHASIVAGDHEGSDPWGSKLVPVATDTEQGADPWGSKASISA----------- 2142
              ADPWGS AS+ AGD   +DPWGSK    A      ADPWGSKAS++A           
Sbjct: 690  GSADPWGSKASLPAGDGGSADPWGSKTSLAAGAEGSSADPWGSKASLAAREGGSADPSGN 749

Query: 2143 ------GD----------------------------------KEQGADAWGRNMAGAST- 2199
                  GD                                  +EQG D WG ++AG +T 
Sbjct: 750  KASLAAGDGGSADPWGSKQTPGTRDGGSADPWGTKLTPGAREQEQGVDPWGSSIAGTTTA 809

Query: 2200 -EKEERADPWGGKTVLGDSSHSDTAFGSWVKVSSTSGEHNS-WNKSEGGGFEKDGDGWNK 2373
               + RADPWGGKT  G SSHSD  F SW K S+ SGE NS WNK+EG G EKDGDGWNK
Sbjct: 810  DNNKPRADPWGGKTTHGGSSHSDKTFDSWAKASTASGEENSVWNKTEGVGCEKDGDGWNK 869

Query: 2374 PCVKTT--------------PPTAKADDKQGADPWGSKVSVTARD 2466
            P   ++               P A  D  +G D WGSK SV  +D
Sbjct: 870  PSASSSFSGRERGADQWESKVPAAAKDHARGVDAWGSKASVANKD 914



 Score =  135 bits (340), Expect = 1e-28
 Identities = 77/169 (45%), Positives = 91/169 (53%), Gaps = 26/169 (15%)
 Frame = +1

Query: 2038 GDHEGSDPWGSKLVPVATDTEQGADP------WGSKASISAGDKEQGADAWGRNMAGAST 2199
            G   G   WG       T TE+  D       WGS  S +  ++E+GA  WG ++AGAST
Sbjct: 1310 GSGRGRGQWGGS----GTATEENQDKSGEFGGWGSGKSWNQKEQERGAGPWGSSVAGAST 1365

Query: 2200 EKEERADPWGGKTVLGDSSHSDTAFGSWVKVSSTSGEHNS-WNKSEGGGFE-KDGDGWNK 2373
            +KE+ ADPWG K    +S+HSD AF SWVK SSTSGE NS W K+ GGG   KDGDGWNK
Sbjct: 1366 DKEQNADPWGSKATPSESNHSDKAFDSWVKASSTSGERNSLWAKTTGGGGSGKDGDGWNK 1425

Query: 2374 PCVKTTPPT------------------AKADDKQGADPWGSKVSVTARD 2466
               KT   T                  +  D  QGADPWGSK S  A+D
Sbjct: 1426 SSTKTISSTLGMISPDQGEGAATWASGSSRDKTQGADPWGSKASPAAKD 1474



 Score =  109 bits (273), Expect = 1e-20
 Identities = 87/285 (30%), Positives = 110/285 (38%), Gaps = 74/285 (25%)
 Frame = +1

Query: 1804 RFTGGLSGNGEQTVVTSSWDGASSSWQALSTSTLFGNNNDQKTEQEQGADPWGSKVSLAA 1983
            R  G   G+G  T       G    W +       G + +QK EQE+GA PWGS V+ A+
Sbjct: 1313 RGRGQWGGSGTATEENQDKSGEFGGWGS-------GKSWNQK-EQERGAGPWGSSVAGAS 1364

Query: 1984 GDREQGADPWGSHASIVAGDH--------------------------------EGSDPWG 2067
             D+EQ ADPWGS A+    +H                                +  D W 
Sbjct: 1365 TDKEQNADPWGSKATPSESNHSDKAFDSWVKASSTSGERNSLWAKTTGGGGSGKDGDGWN 1424

Query: 2068 SKLVPVATDT-----------------------EQGADPWGSKASISAGDK--------- 2151
                   + T                        QGADPWGSKAS +A DK         
Sbjct: 1425 KSSTKTISSTLGMISPDQGEGAATWASGSSRDKTQGADPWGSKASPAAKDKGEADPWGGK 1484

Query: 2152 ---------EQGADAWGRNMAGAS-TEKEERADPWGGKTVLGDSSHSDTAFGSWVKVSST 2301
                      QGADAWG   A  S  +KE++AD WG K   GDSS++             
Sbjct: 1485 LAASARADPGQGADAWGSKAAAPSRADKEQKADAWGSKAAPGDSSNN------------- 1531

Query: 2302 SGEHNSWNKSEGGGFEKDGDGWNKPCVKTTPPTAKADDKQGADPW 2436
              +++ WNK  G G  KDGDGW+K    +T        K GAD W
Sbjct: 1532 --QNSPWNKVAGEGSGKDGDGWSKAATYST--------KNGADGW 1566



 Score =  106 bits (265), Expect = 1e-19
 Identities = 66/195 (33%), Positives = 89/195 (45%), Gaps = 5/195 (2%)
 Frame = +1

Query: 1822 SGNGEQTVVTSSWDGAS-----SSWQALSTSTLFGNNNDQKTEQEQGADPWGSKVSLAAG 1986
            + +GE+  V +  +G         W   S S+ F         +E+GAD W SKV  AA 
Sbjct: 843  TASGEENSVWNKTEGVGCEKDGDGWNKPSASSSFSG-------RERGADQWESKVPAAAK 895

Query: 1987 DREQGADPWGSHASIVAGDHEGSDPWGSKLVPVATDTEQGADPWGSKASISAGDKEQGAD 2166
            D  +G D WGS AS+   D  G DPW SK V      EQG                QG D
Sbjct: 896  DHARGVDAWGSKASVANKDQGGEDPWASK-VTAGVRAEQG----------------QGTD 938

Query: 2167 AWGRNMAGASTEKEERADPWGGKTVLGDSSHSDTAFGSWVKVSSTSGEHNSWNKSEGGGF 2346
             W  N+A A+ +KE++ D W  K  L  +S  D              +++SW+K+ GGG 
Sbjct: 939  PWVSNVAVATRDKEQKFDTWSSKAALAPNSVGD--------------QNSSWDKAAGGGS 984

Query: 2347 EKDGDGWNKPCVKTT 2391
             +DGD W+KP  K T
Sbjct: 985  GEDGDSWSKPSCKGT 999


>gb|ONK75729.1| uncharacterized protein A4U43_C03F19930 [Asparagus officinalis]
          Length = 1710

 Score = 1024 bits (2647), Expect = 0.0
 Identities = 557/884 (63%), Positives = 617/884 (69%), Gaps = 104/884 (11%)
 Frame = +1

Query: 127  RSEGKEFRSAGKPQYLPFLVKXXXXXXXXXXXXIKDRYGRGSEYAVYDEDPKECDDGVSV 306
            +   K+F+ AGK  YLP  VK            IKDRYG+GSEY VYDEDPK+ +  VSV
Sbjct: 27   KESSKDFKGAGKSPYLPIFVKEEEVSGDELEELIKDRYGKGSEYVVYDEDPKQDNAAVSV 86

Query: 307  ELSAEDPKIWRVKCMVGREQQMVLSLMHKYADLQRLGTKMEIISAFTLEHVKGYVYIEAD 486
            E  A DP IW+VKCMVG+EQQ+VLSLMHKYADLQRLGTKM+IISAFTLEHVKGYVYIEAD
Sbjct: 87   EHLAGDPNIWKVKCMVGKEQQIVLSLMHKYADLQRLGTKMDIISAFTLEHVKGYVYIEAD 146

Query: 487  KACDIVEACKGFFNIYATRMGLVPSNDIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 666
            KACD+VEACKGFFNIY+TRMGLVP+ +IPHLLS RNK C +SKGTWVRMK+GNYKGDLGQ
Sbjct: 147  KACDVVEACKGFFNIYSTRMGLVPNTEIPHLLSIRNKACILSKGTWVRMKSGNYKGDLGQ 206

Query: 667  VVDYDEARKRATIKLVPRIDLQAIAKKYGGGVSLKEAAVPAPRLISSQELEHFRSHIEIR 846
            VVDYD+ RK+ATIKLVPRIDLQAIAKK+GGGVSLKEAAVP+PRLISS ELE FRSHIEIR
Sbjct: 207  VVDYDDMRKKATIKLVPRIDLQAIAKKFGGGVSLKEAAVPSPRLISSHELEQFRSHIEIR 266

Query: 847  RDRHSGEYFEILDGLMLKDGFLYKKVSIASIVFWGVQPSKDELLKFTEMSKADEEDVSWL 1026
            RDRHSGE FEILDGLMLKDG+LYKKVSIASIV+WGV+PSKDELLKFTEMSK +EEDVSWL
Sbjct: 267  RDRHSGECFEILDGLMLKDGYLYKKVSIASIVYWGVEPSKDELLKFTEMSKPEEEDVSWL 326

Query: 1027 STVYNVRKKMKSSEAADSKGASELGNGFILHDLVLFGRKGFGVXXXXXXXXXXXXXXXX- 1203
            S+VYNVRKK+K S+ +D KG+SE GN F LHDLVLFGRK FGV                 
Sbjct: 327  SSVYNVRKKIKPSKDSDLKGSSEKGNSFNLHDLVLFGRKAFGVIIDMGKDGTMKVLRGDK 386

Query: 1204 EGQEVMTIKSEDIKGHCVDKMFTASDRHRKTIYINDTVKVLKGPLEGREGVVRHMYKGTL 1383
            EGQEV+T+K+E IK  CVDKMFTASDRHRKTI IND +KVL+GPLEGR+G   HMYKGTL
Sbjct: 387  EGQEVITVKAEAIKSQCVDKMFTASDRHRKTICINDIIKVLEGPLEGRQGTACHMYKGTL 446

Query: 1384 FIYDENQEENSGIFCAKSDLCENITPPKDSSFRKGGNKSSSSFNQSPVRSCEQEDSSYTF 1563
            FIYDE+QE NSGIFC KSDLCE ITP KDS F KG NK+SSSF+Q PV S EQEDSS  F
Sbjct: 447  FIYDESQEGNSGIFCTKSDLCEKITPAKDS-FGKG-NKASSSFSQDPVISSEQEDSS--F 502

Query: 1564 SRNRHSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFLSI 1743
            SRNR  ESNQ FS+GQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITV+EQ LS 
Sbjct: 503  SRNRRRESNQIFSVGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVDEQLLSD 562

Query: 1744 PNIKRDFAAEMPTDIFGTQERFTGGLSGNGEQTVVTSSWDGASSSWQALSTSTL-FGNNN 1920
            PN+KRD A               GGLSGNGEQT+  SSWDG SSSWQ LSTS   F  NN
Sbjct: 563  PNLKRDTAG--------------GGLSGNGEQTLGASSWDGGSSSWQDLSTSAFSFSANN 608

Query: 1921 DQKT------------------EQEQG----------------ADPWGSKVSLAAGDREQ 1998
            DQK+                  +QEQ                 ADPWGSK SLAA D   
Sbjct: 609  DQKSGQEQGADPWAGRVSHVAGDQEQSDPWVSKASITAGDGGSADPWGSKASLAARDDGG 668

Query: 1999 GADPWGSHASIVAGDHEGSDPWGSKLVPVATDTEQGADPWGSKASISA------------ 2142
             ADPWGS AS+ AGD   +DPWGSK   +A      ADPWGSKAS++A            
Sbjct: 669  SADPWGSKASLPAGDGGSADPWGSK-TSLAAGEGSSADPWGSKASLAAREGGSADPSGNK 727

Query: 2143 -----GD----------------------------------KEQGADAWGRNMAGAST-- 2199
                 GD                                  +EQG D WG ++AG +T  
Sbjct: 728  ASLAAGDGGSADPWGSKQTPGTRDGGSADPWGTKLTPGAREQEQGVDPWGSSIAGTTTAD 787

Query: 2200 EKEERADPWGGKTVLGDSSHSDTAFGSWVKVSSTSGEHNS-WNKSEGGGFEKDGDGWNKP 2376
              + RADPWGGKT  G SSHSD  F SW K S+ SGE NS WNK+EG G EKDGDGWNKP
Sbjct: 788  NNKPRADPWGGKTTHGGSSHSDKTFDSWAKASTASGEENSVWNKTEGVGCEKDGDGWNKP 847

Query: 2377 CVKTT--------------PPTAKADDKQGADPWGSKVSVTARD 2466
               ++               P A  D  +G D WGSK SV  +D
Sbjct: 848  SASSSFSGRERGADQWESKVPAAAKDHARGVDAWGSKASVANKD 891



 Score =  135 bits (340), Expect = 1e-28
 Identities = 77/169 (45%), Positives = 91/169 (53%), Gaps = 26/169 (15%)
 Frame = +1

Query: 2038 GDHEGSDPWGSKLVPVATDTEQGADP------WGSKASISAGDKEQGADAWGRNMAGAST 2199
            G   G   WG       T TE+  D       WGS  S +  ++E+GA  WG ++AGAST
Sbjct: 1287 GSGRGRGQWGGS----GTATEENQDKSGEFGGWGSGKSWNQKEQERGAGPWGSSVAGAST 1342

Query: 2200 EKEERADPWGGKTVLGDSSHSDTAFGSWVKVSSTSGEHNS-WNKSEGGGFE-KDGDGWNK 2373
            +KE+ ADPWG K    +S+HSD AF SWVK SSTSGE NS W K+ GGG   KDGDGWNK
Sbjct: 1343 DKEQNADPWGSKATPSESNHSDKAFDSWVKASSTSGERNSLWAKTTGGGGSGKDGDGWNK 1402

Query: 2374 PCVKTTPPT------------------AKADDKQGADPWGSKVSVTARD 2466
               KT   T                  +  D  QGADPWGSK S  A+D
Sbjct: 1403 SSTKTISSTLGMISPDQGEGAATWASGSSRDKTQGADPWGSKASPAAKD 1451



 Score =  113 bits (282), Expect = 1e-21
 Identities = 78/212 (36%), Positives = 95/212 (44%), Gaps = 7/212 (3%)
 Frame = +1

Query: 1822 SGNGEQTVVTSSWDGASSS------WQALSTSTLFGNNNDQKTEQEQGADPWGSKVSLAA 1983
            S +GE+  + +   G   S      W   ST T+         +Q +GA  W S  S   
Sbjct: 1375 STSGERNSLWAKTTGGGGSGKDGDGWNKSSTKTISSTLGMISPDQGEGAATWASGSSR-- 1432

Query: 1984 GDREQGADPWGSHASIVAGDHEGSDPWGSKLVPVATDTEQGADPWGSKASI-SAGDKEQG 2160
             D+ QGADPWGS AS  A D   +DPWG KL   A D  QGAD WGSKA+  S  DKEQ 
Sbjct: 1433 -DKTQGADPWGSKASPAAKDKGEADPWGGKLAASARDPGQGADAWGSKAAAPSRADKEQK 1491

Query: 2161 ADAWGRNMAGASTEKEERADPWGGKTVLGDSSHSDTAFGSWVKVSSTSGEHNSWNKSEGG 2340
            ADA                  WG K   GDSS++               +++ WNK  G 
Sbjct: 1492 ADA------------------WGSKAAPGDSSNN---------------QNSPWNKVAGE 1518

Query: 2341 GFEKDGDGWNKPCVKTTPPTAKADDKQGADPW 2436
            G  KDGDGW+K    +T        K GAD W
Sbjct: 1519 GSGKDGDGWSKAATYST--------KNGADGW 1542



 Score =  106 bits (265), Expect = 1e-19
 Identities = 66/195 (33%), Positives = 89/195 (45%), Gaps = 5/195 (2%)
 Frame = +1

Query: 1822 SGNGEQTVVTSSWDGAS-----SSWQALSTSTLFGNNNDQKTEQEQGADPWGSKVSLAAG 1986
            + +GE+  V +  +G         W   S S+ F         +E+GAD W SKV  AA 
Sbjct: 820  TASGEENSVWNKTEGVGCEKDGDGWNKPSASSSFSG-------RERGADQWESKVPAAAK 872

Query: 1987 DREQGADPWGSHASIVAGDHEGSDPWGSKLVPVATDTEQGADPWGSKASISAGDKEQGAD 2166
            D  +G D WGS AS+   D  G DPW SK V      EQG                QG D
Sbjct: 873  DHARGVDAWGSKASVANKDQGGEDPWASK-VTAGVRAEQG----------------QGTD 915

Query: 2167 AWGRNMAGASTEKEERADPWGGKTVLGDSSHSDTAFGSWVKVSSTSGEHNSWNKSEGGGF 2346
             W  N+A A+ +KE++ D W  K  L  +S  D              +++SW+K+ GGG 
Sbjct: 916  PWVSNVAVATRDKEQKFDTWSSKAALAPNSVGD--------------QNSSWDKAAGGGS 961

Query: 2347 EKDGDGWNKPCVKTT 2391
             +DGD W+KP  K T
Sbjct: 962  GEDGDSWSKPSCKGT 976


>ref|XP_010933206.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X3 [Elaeis
            guineensis]
          Length = 2067

 Score =  738 bits (1904), Expect = 0.0
 Identities = 398/762 (52%), Positives = 503/762 (66%), Gaps = 11/762 (1%)
 Frame = +1

Query: 112  FSKGGRSEGKEFRSAGKPQYLPFLVKXXXXXXXXXXXXIKDRYGRGSEYAVYDEDPKECD 291
            F    +S  ++ R  GK   +PF +K            IKDRYG GSE+ VY+ED KE D
Sbjct: 79   FMDASKSGNEDIRPVGKSHPVPFFLKEEELSGDELEALIKDRYGHGSEFVVYNEDSKERD 138

Query: 292  DGVSVELSAEDPKIWRVKCMVGREQQMVLSLMHKYADLQRLGTKMEIISAFTLEHVKGYV 471
            D +S   S +DP +WRVKCM GRE+Q+    M KY DL   G+KM+IISAF L+HVKGYV
Sbjct: 139  DRISEVDSLKDPTVWRVKCMGGRERQIAFCFMQKYIDLNNYGSKMQIISAFALDHVKGYV 198

Query: 472  YIEADKACDIVEACKGFFNIYATRMGLVPSNDIPHLLSTRNKPCTISKGTWVRMKNGNYK 651
            +IEADK CDI+EACKGF+++Y++++  VP +++P L S+R+K C +S+G+WVRMK+G YK
Sbjct: 199  FIEADKECDIIEACKGFYSVYSSKINRVPGSEVPQLFSSRSKSCEVSEGSWVRMKSGKYK 258

Query: 652  GDLGQVVDYDEARKRATIKLVPRIDLQAIAKKYGGGVSLKEAAVPAPRLISSQELEHFRS 831
            GDL QVV  D+ +K+  +KL+PR+DLQAI+KK+GGG+SLK+AAVPAPRLISS ELE FR 
Sbjct: 259  GDLAQVVAVDDGQKKVMVKLIPRVDLQAISKKFGGGISLKQAAVPAPRLISSHELEMFRP 318

Query: 832  HIEIRRDRHSGEYFEILDGLMLKDGFLYKKVSIASIVFWGVQPSKDELLKFTEMSKADEE 1011
            HIE+RRDR +GE F+ILDGLMLKDGFLYK+VSI S++ W VQPS  ELLKF+ +SK  +E
Sbjct: 319  HIEVRRDRQTGEIFDILDGLMLKDGFLYKRVSIGSVICWAVQPSDMELLKFSNVSKVGDE 378

Query: 1012 DVSWLSTVYNVRKKMKSSEAADSKGASELGNGFILHDLVLFGRKGFGVXXXXXXXXXXXX 1191
            D++W+S+VY  R KM+ SEAAD K  ++ GNGF LHD VLFG K FGV            
Sbjct: 379  DLTWVSSVYRGRNKMRLSEAADQKVLAKKGNGFNLHDFVLFGHKAFGVIIAVEKDGFRIL 438

Query: 1192 XXXXEGQEVMTIKSEDIKGHCVDKMFTASDRHRKTIYINDTVKVLKGPLEGREGVVRHMY 1371
                EG EV+T+K +DIK  CVDKMFTASDR+ KTI INDTVKVL+GPL+ R+G+VRHMY
Sbjct: 439  KGGMEGPEVVTVKVQDIKSACVDKMFTASDRYMKTISINDTVKVLEGPLQDRQGIVRHMY 498

Query: 1372 KGTLFIYDENQEENSGIFCAKSDLCENITPPKDSSFRKGGNKSSSSFNQSPVRSCEQEDS 1551
            KGTLFIYDEN+ ENSG FCAKS  CEN+   K       G KSS SF Q P+RS E++D 
Sbjct: 499  KGTLFIYDENETENSGFFCAKSASCENLKELK-------GEKSSHSFFQPPMRSSEEQDR 551

Query: 1552 SYTFSRNRHSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQ 1731
            S+ F+ +R S+ +Q FSIGQTLRIRKGPLKGYLCRVV +YRSDVTVKLDSLVKVITVE +
Sbjct: 552  SHGFNWHRQSDRDQIFSIGQTLRIRKGPLKGYLCRVVGVYRSDVTVKLDSLVKVITVEAE 611

Query: 1732 FLSIPNIKRDFAAEMPTDIFGTQERFTGGLSGNGEQTVVTSSWDGA-----SSSWQALST 1896
            +LS+PN+KRD +A   ++ FGTQE    GLS  G Q V    WD +       SWQA   
Sbjct: 612  YLSVPNVKRDDSAATTSNTFGTQE----GLSIAG-QHVDNGQWDASVPSFGRGSWQAFPG 666

Query: 1897 STLFG-NNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHASIVAGDHEGSDPWGSK 2073
            S     +NND K+++   ADPWGSKV   A      AD W  H+S      +  D WG  
Sbjct: 667  SNSSDVDNNDHKSDEGHDADPWGSKVLSGA-----RADAW--HSS------KAMDGWGKA 713

Query: 2074 LVPVA-TDTEQGADPWGSKASISAGDKEQGADAW-GRNMAGASTEKEERADPWGGKTVLG 2247
                   D++      G K +  A +  + AD W G+ +A  STE +E   P    +  G
Sbjct: 714  AGSSGEQDSQWNMTAAGDKVTDQARNCIEDADGWNGKALAKTSTEIDESKKPKPQSSDAG 773

Query: 2248 DSSHSDTAFGSWVKVSSTSGEHNSWNKSEG---GGFEKDGDG 2364
                 D  FGS   +  T     +W+K      G   K+ DG
Sbjct: 774  GWGRGD--FGSGNNLDPTENVSGNWDKQRDDDLGDSRKNSDG 813


>ref|XP_010933194.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X1 [Elaeis
            guineensis]
          Length = 2069

 Score =  738 bits (1904), Expect = 0.0
 Identities = 398/762 (52%), Positives = 503/762 (66%), Gaps = 11/762 (1%)
 Frame = +1

Query: 112  FSKGGRSEGKEFRSAGKPQYLPFLVKXXXXXXXXXXXXIKDRYGRGSEYAVYDEDPKECD 291
            F    +S  ++ R  GK   +PF +K            IKDRYG GSE+ VY+ED KE D
Sbjct: 81   FMDASKSGNEDIRPVGKSHPVPFFLKEEELSGDELEALIKDRYGHGSEFVVYNEDSKERD 140

Query: 292  DGVSVELSAEDPKIWRVKCMVGREQQMVLSLMHKYADLQRLGTKMEIISAFTLEHVKGYV 471
            D +S   S +DP +WRVKCM GRE+Q+    M KY DL   G+KM+IISAF L+HVKGYV
Sbjct: 141  DRISEVDSLKDPTVWRVKCMGGRERQIAFCFMQKYIDLNNYGSKMQIISAFALDHVKGYV 200

Query: 472  YIEADKACDIVEACKGFFNIYATRMGLVPSNDIPHLLSTRNKPCTISKGTWVRMKNGNYK 651
            +IEADK CDI+EACKGF+++Y++++  VP +++P L S+R+K C +S+G+WVRMK+G YK
Sbjct: 201  FIEADKECDIIEACKGFYSVYSSKINRVPGSEVPQLFSSRSKSCEVSEGSWVRMKSGKYK 260

Query: 652  GDLGQVVDYDEARKRATIKLVPRIDLQAIAKKYGGGVSLKEAAVPAPRLISSQELEHFRS 831
            GDL QVV  D+ +K+  +KL+PR+DLQAI+KK+GGG+SLK+AAVPAPRLISS ELE FR 
Sbjct: 261  GDLAQVVAVDDGQKKVMVKLIPRVDLQAISKKFGGGISLKQAAVPAPRLISSHELEMFRP 320

Query: 832  HIEIRRDRHSGEYFEILDGLMLKDGFLYKKVSIASIVFWGVQPSKDELLKFTEMSKADEE 1011
            HIE+RRDR +GE F+ILDGLMLKDGFLYK+VSI S++ W VQPS  ELLKF+ +SK  +E
Sbjct: 321  HIEVRRDRQTGEIFDILDGLMLKDGFLYKRVSIGSVICWAVQPSDMELLKFSNVSKVGDE 380

Query: 1012 DVSWLSTVYNVRKKMKSSEAADSKGASELGNGFILHDLVLFGRKGFGVXXXXXXXXXXXX 1191
            D++W+S+VY  R KM+ SEAAD K  ++ GNGF LHD VLFG K FGV            
Sbjct: 381  DLTWVSSVYRGRNKMRLSEAADQKVLAKKGNGFNLHDFVLFGHKAFGVIIAVEKDGFRIL 440

Query: 1192 XXXXEGQEVMTIKSEDIKGHCVDKMFTASDRHRKTIYINDTVKVLKGPLEGREGVVRHMY 1371
                EG EV+T+K +DIK  CVDKMFTASDR+ KTI INDTVKVL+GPL+ R+G+VRHMY
Sbjct: 441  KGGMEGPEVVTVKVQDIKSACVDKMFTASDRYMKTISINDTVKVLEGPLQDRQGIVRHMY 500

Query: 1372 KGTLFIYDENQEENSGIFCAKSDLCENITPPKDSSFRKGGNKSSSSFNQSPVRSCEQEDS 1551
            KGTLFIYDEN+ ENSG FCAKS  CEN+   K       G KSS SF Q P+RS E++D 
Sbjct: 501  KGTLFIYDENETENSGFFCAKSASCENLKELK-------GEKSSHSFFQPPMRSSEEQDR 553

Query: 1552 SYTFSRNRHSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQ 1731
            S+ F+ +R S+ +Q FSIGQTLRIRKGPLKGYLCRVV +YRSDVTVKLDSLVKVITVE +
Sbjct: 554  SHGFNWHRQSDRDQIFSIGQTLRIRKGPLKGYLCRVVGVYRSDVTVKLDSLVKVITVEAE 613

Query: 1732 FLSIPNIKRDFAAEMPTDIFGTQERFTGGLSGNGEQTVVTSSWDGA-----SSSWQALST 1896
            +LS+PN+KRD +A   ++ FGTQE    GLS  G Q V    WD +       SWQA   
Sbjct: 614  YLSVPNVKRDDSAATTSNTFGTQE----GLSIAG-QHVDNGQWDASVPSFGRGSWQAFPG 668

Query: 1897 STLFG-NNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHASIVAGDHEGSDPWGSK 2073
            S     +NND K+++   ADPWGSKV   A      AD W  H+S      +  D WG  
Sbjct: 669  SNSSDVDNNDHKSDEGHDADPWGSKVLSGA-----RADAW--HSS------KAMDGWGKA 715

Query: 2074 LVPVA-TDTEQGADPWGSKASISAGDKEQGADAW-GRNMAGASTEKEERADPWGGKTVLG 2247
                   D++      G K +  A +  + AD W G+ +A  STE +E   P    +  G
Sbjct: 716  AGSSGEQDSQWNMTAAGDKVTDQARNCIEDADGWNGKALAKTSTEIDESKKPKPQSSDAG 775

Query: 2248 DSSHSDTAFGSWVKVSSTSGEHNSWNKSEG---GGFEKDGDG 2364
                 D  FGS   +  T     +W+K      G   K+ DG
Sbjct: 776  GWGRGD--FGSGNNLDPTENVSGNWDKQRDDDLGDSRKNSDG 815


>ref|XP_010933212.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X4 [Elaeis
            guineensis]
          Length = 2066

 Score =  736 bits (1901), Expect = 0.0
 Identities = 395/762 (51%), Positives = 501/762 (65%), Gaps = 11/762 (1%)
 Frame = +1

Query: 112  FSKGGRSEGKEFRSAGKPQYLPFLVKXXXXXXXXXXXXIKDRYGRGSEYAVYDEDPKECD 291
            F    +S  ++ R  GK   +PF +K            IKDRYG GSE+ VY+ED KE D
Sbjct: 79   FMDASKSGNEDIRPVGKSHPVPFFLKEEELSGDELEALIKDRYGHGSEFVVYNEDSKERD 138

Query: 292  DGVSVELSAEDPKIWRVKCMVGREQQMVLSLMHKYADLQRLGTKMEIISAFTLEHVKGYV 471
            D +S   S +DP +WRVKCM GRE+Q+    M KY DL   G+KM+IISAF L+HVKGYV
Sbjct: 139  DRISEVDSLKDPTVWRVKCMGGRERQIAFCFMQKYIDLNNYGSKMQIISAFALDHVKGYV 198

Query: 472  YIEADKACDIVEACKGFFNIYATRMGLVPSNDIPHLLSTRNKPCTISKGTWVRMKNGNYK 651
            +IEADK CDI+EACKGF+++Y++++  VP +++P L S+R+K C +S+G+WVRMK+G YK
Sbjct: 199  FIEADKECDIIEACKGFYSVYSSKINRVPGSEVPQLFSSRSKSCEVSEGSWVRMKSGKYK 258

Query: 652  GDLGQVVDYDEARKRATIKLVPRIDLQAIAKKYGGGVSLKEAAVPAPRLISSQELEHFRS 831
            GDL QVV  D+ +K+  +KL+PR+DLQAI+KK+GGG+SLK+AAVPAPRLISS ELE FR 
Sbjct: 259  GDLAQVVAVDDGQKKVMVKLIPRVDLQAISKKFGGGISLKQAAVPAPRLISSHELEMFRP 318

Query: 832  HIEIRRDRHSGEYFEILDGLMLKDGFLYKKVSIASIVFWGVQPSKDELLKFTEMSKADEE 1011
            HIE+RRDR +GE F+ILDGLMLKDGFLYK+VSI S++ W VQPS  ELLKF+ +SK  +E
Sbjct: 319  HIEVRRDRQTGEIFDILDGLMLKDGFLYKRVSIGSVICWAVQPSDMELLKFSNVSKVGDE 378

Query: 1012 DVSWLSTVYNVRKKMKSSEAADSKGASELGNGFILHDLVLFGRKGFGVXXXXXXXXXXXX 1191
            D++W+S+VY  R KM+ SEAAD K  ++ GNGF LHD VLFG K FGV            
Sbjct: 379  DLTWVSSVYRGRNKMRLSEAADQKVLAKKGNGFNLHDFVLFGHKAFGVIIAVEKDGFRIL 438

Query: 1192 XXXXEGQEVMTIKSEDIKGHCVDKMFTASDRHRKTIYINDTVKVLKGPLEGREGVVRHMY 1371
                EG EV+T+K +DIK  CVDKMFTASDR+ KTI INDTVKVL+GPL+ R+G+VRHMY
Sbjct: 439  KGGMEGPEVVTVKVQDIKSACVDKMFTASDRYMKTISINDTVKVLEGPLQDRQGIVRHMY 498

Query: 1372 KGTLFIYDENQEENSGIFCAKSDLCENITPPKDSSFRKGGNKSSSSFNQSPVRSCEQEDS 1551
            KGTLFIYDEN+ ENSG FCAKS  CEN+   K       G KSS SF Q P+RS E++D 
Sbjct: 499  KGTLFIYDENETENSGFFCAKSASCENLKELK-------GEKSSHSFFQPPMRSSEEQDR 551

Query: 1552 SYTFSRNRHSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQ 1731
            S+ F+ +R S+ +Q FSIGQTLRIRKGPLKGYLCRVV +YRSDVTVKLDSLVKVITVE +
Sbjct: 552  SHGFNWHRQSDRDQIFSIGQTLRIRKGPLKGYLCRVVGVYRSDVTVKLDSLVKVITVEAE 611

Query: 1732 FLSIPNIKRDFAAEMPTDIFGTQERFTGGLSGNGEQTVVTSSWDGA-----SSSWQALST 1896
            +LS+PN+KRD +A   ++ FGTQE  + G      Q V    WD +       SWQA   
Sbjct: 612  YLSVPNVKRDDSAATTSNTFGTQEGLSIG------QHVDNGQWDASVPSFGRGSWQAFPG 665

Query: 1897 STLFG-NNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHASIVAGDHEGSDPWGSK 2073
            S     +NND K+++   ADPWGSKV   A      AD W  H+S      +  D WG  
Sbjct: 666  SNSSDVDNNDHKSDEGHDADPWGSKVLSGA-----RADAW--HSS------KAMDGWGKA 712

Query: 2074 LVPVA-TDTEQGADPWGSKASISAGDKEQGADAW-GRNMAGASTEKEERADPWGGKTVLG 2247
                   D++      G K +  A +  + AD W G+ +A  STE +E   P    +  G
Sbjct: 713  AGSSGEQDSQWNMTAAGDKVTDQARNCIEDADGWNGKALAKTSTEIDESKKPKPQSSDAG 772

Query: 2248 DSSHSDTAFGSWVKVSSTSGEHNSWNKSEG---GGFEKDGDG 2364
                 D  FGS   +  T     +W+K      G   K+ DG
Sbjct: 773  GWGRGD--FGSGNNLDPTENVSGNWDKQRDDDLGDSRKNSDG 812


>ref|XP_010933199.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X2 [Elaeis
            guineensis]
          Length = 2068

 Score =  736 bits (1901), Expect = 0.0
 Identities = 395/762 (51%), Positives = 501/762 (65%), Gaps = 11/762 (1%)
 Frame = +1

Query: 112  FSKGGRSEGKEFRSAGKPQYLPFLVKXXXXXXXXXXXXIKDRYGRGSEYAVYDEDPKECD 291
            F    +S  ++ R  GK   +PF +K            IKDRYG GSE+ VY+ED KE D
Sbjct: 81   FMDASKSGNEDIRPVGKSHPVPFFLKEEELSGDELEALIKDRYGHGSEFVVYNEDSKERD 140

Query: 292  DGVSVELSAEDPKIWRVKCMVGREQQMVLSLMHKYADLQRLGTKMEIISAFTLEHVKGYV 471
            D +S   S +DP +WRVKCM GRE+Q+    M KY DL   G+KM+IISAF L+HVKGYV
Sbjct: 141  DRISEVDSLKDPTVWRVKCMGGRERQIAFCFMQKYIDLNNYGSKMQIISAFALDHVKGYV 200

Query: 472  YIEADKACDIVEACKGFFNIYATRMGLVPSNDIPHLLSTRNKPCTISKGTWVRMKNGNYK 651
            +IEADK CDI+EACKGF+++Y++++  VP +++P L S+R+K C +S+G+WVRMK+G YK
Sbjct: 201  FIEADKECDIIEACKGFYSVYSSKINRVPGSEVPQLFSSRSKSCEVSEGSWVRMKSGKYK 260

Query: 652  GDLGQVVDYDEARKRATIKLVPRIDLQAIAKKYGGGVSLKEAAVPAPRLISSQELEHFRS 831
            GDL QVV  D+ +K+  +KL+PR+DLQAI+KK+GGG+SLK+AAVPAPRLISS ELE FR 
Sbjct: 261  GDLAQVVAVDDGQKKVMVKLIPRVDLQAISKKFGGGISLKQAAVPAPRLISSHELEMFRP 320

Query: 832  HIEIRRDRHSGEYFEILDGLMLKDGFLYKKVSIASIVFWGVQPSKDELLKFTEMSKADEE 1011
            HIE+RRDR +GE F+ILDGLMLKDGFLYK+VSI S++ W VQPS  ELLKF+ +SK  +E
Sbjct: 321  HIEVRRDRQTGEIFDILDGLMLKDGFLYKRVSIGSVICWAVQPSDMELLKFSNVSKVGDE 380

Query: 1012 DVSWLSTVYNVRKKMKSSEAADSKGASELGNGFILHDLVLFGRKGFGVXXXXXXXXXXXX 1191
            D++W+S+VY  R KM+ SEAAD K  ++ GNGF LHD VLFG K FGV            
Sbjct: 381  DLTWVSSVYRGRNKMRLSEAADQKVLAKKGNGFNLHDFVLFGHKAFGVIIAVEKDGFRIL 440

Query: 1192 XXXXEGQEVMTIKSEDIKGHCVDKMFTASDRHRKTIYINDTVKVLKGPLEGREGVVRHMY 1371
                EG EV+T+K +DIK  CVDKMFTASDR+ KTI INDTVKVL+GPL+ R+G+VRHMY
Sbjct: 441  KGGMEGPEVVTVKVQDIKSACVDKMFTASDRYMKTISINDTVKVLEGPLQDRQGIVRHMY 500

Query: 1372 KGTLFIYDENQEENSGIFCAKSDLCENITPPKDSSFRKGGNKSSSSFNQSPVRSCEQEDS 1551
            KGTLFIYDEN+ ENSG FCAKS  CEN+   K       G KSS SF Q P+RS E++D 
Sbjct: 501  KGTLFIYDENETENSGFFCAKSASCENLKELK-------GEKSSHSFFQPPMRSSEEQDR 553

Query: 1552 SYTFSRNRHSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQ 1731
            S+ F+ +R S+ +Q FSIGQTLRIRKGPLKGYLCRVV +YRSDVTVKLDSLVKVITVE +
Sbjct: 554  SHGFNWHRQSDRDQIFSIGQTLRIRKGPLKGYLCRVVGVYRSDVTVKLDSLVKVITVEAE 613

Query: 1732 FLSIPNIKRDFAAEMPTDIFGTQERFTGGLSGNGEQTVVTSSWDGA-----SSSWQALST 1896
            +LS+PN+KRD +A   ++ FGTQE  + G      Q V    WD +       SWQA   
Sbjct: 614  YLSVPNVKRDDSAATTSNTFGTQEGLSIG------QHVDNGQWDASVPSFGRGSWQAFPG 667

Query: 1897 STLFG-NNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHASIVAGDHEGSDPWGSK 2073
            S     +NND K+++   ADPWGSKV   A      AD W  H+S      +  D WG  
Sbjct: 668  SNSSDVDNNDHKSDEGHDADPWGSKVLSGA-----RADAW--HSS------KAMDGWGKA 714

Query: 2074 LVPVA-TDTEQGADPWGSKASISAGDKEQGADAW-GRNMAGASTEKEERADPWGGKTVLG 2247
                   D++      G K +  A +  + AD W G+ +A  STE +E   P    +  G
Sbjct: 715  AGSSGEQDSQWNMTAAGDKVTDQARNCIEDADGWNGKALAKTSTEIDESKKPKPQSSDAG 774

Query: 2248 DSSHSDTAFGSWVKVSSTSGEHNSWNKSEG---GGFEKDGDG 2364
                 D  FGS   +  T     +W+K      G   K+ DG
Sbjct: 775  GWGRGD--FGSGNNLDPTENVSGNWDKQRDDDLGDSRKNSDG 814


>ref|XP_008794002.1| PREDICTED: protein RNA-directed DNA methylation 3 [Phoenix
            dactylifera]
          Length = 2039

 Score =  724 bits (1870), Expect = 0.0
 Identities = 398/812 (49%), Positives = 510/812 (62%), Gaps = 34/812 (4%)
 Frame = +1

Query: 142  EFRSAGKPQYLPFLVKXXXXXXXXXXXXIKDRYGRGSEYAVYDEDPKECDDGVSVELSAE 321
            + R  GK   LPF +K            IKDRYG GSE+ VY+ED KE DD VS   S +
Sbjct: 87   DVRPVGKSHPLPFFLKEEELSGDELEALIKDRYGHGSEFVVYNEDSKERDDRVSEVDSLK 146

Query: 322  DPKIWRVKCMVGREQQMVLSLMHKYADLQRLGTKMEIISAFTLEHVKGYVYIEADKACDI 501
            DP +WRVKCMVGRE+Q+    M KY DL   G K++IISAF L+HVKGYV+IEADK  D+
Sbjct: 147  DPSVWRVKCMVGRERQIAFCFMQKYIDLNNFGNKIQIISAFALDHVKGYVFIEADKEYDV 206

Query: 502  VEACKGFFNIYATRMGLVPSNDIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYD 681
             EACKGF+++Y++++  V  +++P L S+R+K C +S+G+WVRMK+G YKGDL QVV  D
Sbjct: 207  TEACKGFYSVYSSKINRVHGSEVPQLFSSRSKSCEVSEGSWVRMKSGKYKGDLAQVVAVD 266

Query: 682  EARKRATIKLVPRIDLQAIAKKYGGGVSLKEAAVPAPRLISSQELEHFRSHIEIRRDRHS 861
            + +K+  +KLVPR+DLQAI+KK+GGGVSLK+AAVPAPRLISS ELE FR HIE+RRDR +
Sbjct: 267  DGQKKVMVKLVPRVDLQAISKKFGGGVSLKQAAVPAPRLISSHELEMFRPHIEVRRDRQT 326

Query: 862  GEYFEILDGLMLKDGFLYKKVSIASIVFWGVQPSKDELLKFTEMSKADEEDVSWLSTVYN 1041
            GE FEILDGLMLKDGFLYK+VSI S++ WGVQPS  ELLKF+ + K  +E ++W+S+VY+
Sbjct: 327  GEIFEILDGLMLKDGFLYKRVSIGSVICWGVQPSDMELLKFSSVGKDGDEHLNWVSSVYH 386

Query: 1042 VRKKMKSSEAADSKGASELGNGFILHDLVLFGRKGFGVXXXXXXXXXXXXXXXXEGQEVM 1221
             R KM+ +EAAD +  ++ GNGF LHD VLFG K FGV                EG EV+
Sbjct: 387  GRNKMRPTEAADQQVLAKKGNGFNLHDFVLFGHKAFGVIIAVEKDGFRILKGGVEGPEVV 446

Query: 1222 TIKSEDIKGHCVDKMFTASDRHRKTIYINDTVKVLKGPLEGREGVVRHMYKGTLFIYDEN 1401
            T+K +DIK  CVDKMFTASDR+ KTI INDTVKVL+GPL+ ++G+V+HMYKGTLFIYDEN
Sbjct: 447  TVKIQDIKSACVDKMFTASDRYMKTISINDTVKVLEGPLQDKQGIVKHMYKGTLFIYDEN 506

Query: 1402 QEENSGIFCAKSDLCENITPPKDSSFRKGGNKSSSSFNQSPVRSCEQEDSSYTFSRNRHS 1581
            + ENSG FCAKS  CEN+   K       G KSS SF+Q+P+ S E++D S+ F+  R +
Sbjct: 507  ETENSGFFCAKSASCENMKESK-------GEKSSHSFSQAPMGSYEEQDRSHGFNWRRQT 559

Query: 1582 ESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKRD 1761
            E +Q FSIGQTLRIRKGPLKGYLCRVV +YRSDVTVK+DSLVK+ITVE ++LS+PN+KRD
Sbjct: 560  ERDQVFSIGQTLRIRKGPLKGYLCRVVGVYRSDVTVKVDSLVKIITVEAEYLSVPNVKRD 619

Query: 1762 FAAEMPTDIFGTQERFT-GGLSGNGEQTVVTSSWDGASSSWQALSTSTLFG-NNNDQKTE 1935
             +A   ++ FGTQER + G  + NG+  V   S+     SWQA   S     +NN  K +
Sbjct: 620  DSAATTSNPFGTQERLSIGQHAENGQWDVGVPSF--GRDSWQAFPASNFSDVDNNGHKAD 677

Query: 1936 QEQGADPWGSKV-SLAAGD---REQGADPWGSHASIVAGDHEGSDPW-----GSKLVPVA 2088
            +   ADPWGSKV S A  D     +  D WG  AS      E    W     G K+   A
Sbjct: 678  EGHDADPWGSKVISGARADAWHSSKAMDGWGKAAS---SSGEQDSQWNMTAAGEKVTDQA 734

Query: 2089 TDTEQGADPWGSKA----------SISAGDKEQGADAWGRNMAGASTE---KEERADPWG 2229
             +  + AD W  KA          S  +  +  G   WGR   G+       E     W 
Sbjct: 735  RNCIEDADGWNGKALAKTSTEIDGSKKSKPQSGGDGGWGRGNFGSGNNLDPSENVTGNWD 794

Query: 2230 GKTV--LGDSSHSDTAFGSW--VKVSSTSGEHNSWNKSEGGGFEKDGDGWNKPCVKTTPP 2397
             +    LGDS  +      W     S   G+  SW++S         + W +P V +   
Sbjct: 795  KQRADNLGDSLKNSDGVSGWDRAATSKDKGKDLSWDRS---------NNWTRPEVVSNDK 845

Query: 2398 TAKADDKQGA------DPWGSKVSVTARDDTQ 2475
             +  D K  A      D WG   S   ++  +
Sbjct: 846  VSSWDVKGKAIISNEDDSWGKAASTQEKNTNE 877


>ref|XP_020091605.1| protein RNA-directed DNA methylation 3 isoform X3 [Ananas comosus]
          Length = 1714

 Score =  696 bits (1795), Expect = 0.0
 Identities = 388/800 (48%), Positives = 509/800 (63%), Gaps = 19/800 (2%)
 Frame = +1

Query: 127  RSEGKEFRSAGKPQYLPFLVKXXXXXXXXXXXXIKDRYGRGSEYAVYDEDPKECDDGVSV 306
            ++E ++ +   +P +LPF VK            IKDRYGR S+Y V+ ED KE  D VS 
Sbjct: 81   KAENEDLKGTARPPHLPFFVKEEELSGDELEELIKDRYGRSSKYVVHAEDSKESGDEVSA 140

Query: 307  ELSAEDPKIWRVKCMVGREQQMVLSLMHKYADLQRLGTKMEIISAFTLEHVKGYVYIEAD 486
                +DP +W++KCM+GRE+QM    M K+ DL  LG K++I+SAF L+HVKG+V++EAD
Sbjct: 141  ADLMKDPTVWKIKCMIGRERQMAFCFMQKFVDLDCLGNKLQIVSAFALDHVKGFVFVEAD 200

Query: 487  KACDIVEACKGFFNIYATRMGLVPSNDIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 666
            KA D+ EACKGF NIY  R+ LVP +++ HLLS+RNK C IS+G+WVRMK+G YKGDL Q
Sbjct: 201  KANDVSEACKGFCNIYPGRINLVPPSEVSHLLSSRNKSCGISQGSWVRMKSGKYKGDLAQ 260

Query: 667  VVDYDEARKRATIKLVPRIDLQAIAKKYGGGVSLKEAAVPAPRLISSQELEHFRSHIEIR 846
            VV+ D+ RKR  IKL+PRIDLQAI+KK+GGG+SLK AAVPAPRLISS EL+ FR  IE R
Sbjct: 261  VVNLDDGRKRVMIKLIPRIDLQAISKKFGGGLSLKHAAVPAPRLISSHELDEFRPLIETR 320

Query: 847  RDRHSGEYFEILDGLMLKDGFLYKKVSIASIVFWGVQPSKDELLKFTEMSKADEEDVSWL 1026
            RDR SGE FE+LDG+MLKDG++YK VS  S+VFWGVQPS+ ELLKF+ ++K D ED+ W+
Sbjct: 321  RDRQSGEVFEVLDGMMLKDGYMYKWVSNGSVVFWGVQPSESELLKFSNVNKDDSEDLDWV 380

Query: 1027 STVYNVRKKMKSSEAADSKGASELGNGFILHDLVLFGRKGFGVXXXXXXXXXXXXXXXXE 1206
            S+VY+ RKK++ ++ +D+   +   N + LHDLVLFG+K FGV                E
Sbjct: 381  SSVYSGRKKVRLTDDSDNVATTSRKNEYKLHDLVLFGQKDFGVIVTVEKDGVRILKGGTE 440

Query: 1207 GQEVMTIKSEDIKGHCVDKMFTASDRHRKTIYINDTVKVLKGPLEGREGVVRHMYKGTLF 1386
            G  V+T++ +DIK  CVDKMFTA DRH KTI +ND VKVL+G LEGR+G+V+H+Y+G++F
Sbjct: 441  GSAVVTLRKQDIKSGCVDKMFTALDRHSKTISVNDIVKVLEGSLEGRQGIVKHLYRGSIF 500

Query: 1387 IYDENQEENSGIFCAKSDLCENITPPKDS--SFRKG-GNKSSSSFNQSPVRSCEQEDSSY 1557
            IYDEN+ ENSG FCAKS+ CE I   ++S  SF    G+ S+S F++ P  S E +DSS 
Sbjct: 501  IYDENETENSGFFCAKSESCEKIKKSRESVNSFDDNLGDGSASLFSEPPTISFENQDSSS 560

Query: 1558 TFSRNRHSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFL 1737
               R R  + +  FSIGQTLRI KGPLKGYLCRVVRI+RS+VTVKLDSLVK+ITV+ +FL
Sbjct: 561  GAGRRRQYDRDSLFSIGQTLRICKGPLKGYLCRVVRIFRSEVTVKLDSLVKIITVDAKFL 620

Query: 1738 SIPNIKRDFAAEMPTDIFGTQER-FTGGLSGNG-EQTVVTSSWDG-----ASSSWQALST 1896
            S+P  KRD +    +D+FGTQE    G  S +G E     SSWD       S  WQ  S 
Sbjct: 621  SVPTRKRDDSTGAASDLFGTQEMPSIGPFSADGTESQPGRSSWDSPLPSFGSDGWQPFSA 680

Query: 1897 STL-FGNNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHASIVAGDHEGSDPWGSK 2073
            S L    N D KT+     DPWGSKV       +Q AD W ++A+  +GD   S  W   
Sbjct: 681  SKLSAAGNTDNKTDD---VDPWGSKVK-----SDQSADTW-ANAAAPSGDQNSS--WDKS 729

Query: 2074 LVPVATDTEQGADPWGSKAS--ISAGDKEQGADAWGRNMAGASTEKEERADPWGGKTVLG 2247
                A+     AD W + ++   + G ++  +DA G        EKE        KT+  
Sbjct: 730  TTNAASGQ---ADTWQNNSNDWSNKGSQKSTSDAGG-------WEKE--------KTLAS 771

Query: 2248 DSSHSDTAFGSWVKVS----STSGEHNSWNKSEGGGFEKDGDGWNKP--CVKTTPPTAKA 2409
            DS  S   +G+  K+S    S +G  N+W+K+     +  G  WN+P    K+   T+K 
Sbjct: 772  DSGGS---WGTGNKISNLDNSKTGGDNAWDKASNDKDKGKGSSWNEPNNWTKSEAVTSKT 828

Query: 2410 DDKQGADPWGSKVSVTARDD 2469
            D       W  K    A DD
Sbjct: 829  DS------WDVKGKAIAMDD 842


>ref|XP_020091606.1| protein RNA-directed DNA methylation 3 isoform X4 [Ananas comosus]
          Length = 1705

 Score =  695 bits (1794), Expect = 0.0
 Identities = 388/801 (48%), Positives = 509/801 (63%), Gaps = 20/801 (2%)
 Frame = +1

Query: 127  RSEGKEFRSAGKPQYLPFLVKXXXXXXXXXXXXIKDRYGRGSEYAVYDEDPKECDDGVSV 306
            ++E ++ +   +P +LPF VK            IKDRYGR S+Y V+ ED KE  D VS 
Sbjct: 81   KAENEDLKGTARPPHLPFFVKEEELSGDELEELIKDRYGRSSKYVVHAEDSKESGDEVSA 140

Query: 307  ELSAEDPKIWRVKCMVGREQQMVLSLMHKYADLQRLGTKMEIISAFTLEHVKGYVYIEAD 486
                +DP +W++KCM+GRE+QM    M K+ DL  LG K++I+SAF L+HVKG+V++EAD
Sbjct: 141  ADLMKDPTVWKIKCMIGRERQMAFCFMQKFVDLDCLGNKLQIVSAFALDHVKGFVFVEAD 200

Query: 487  KACDIVEACKGFFNIYATRMGLVPSNDIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 666
            KA D+ EACKGF NIY  R+ LVP +++ HLLS+RNK C IS+G+WVRMK+G YKGDL Q
Sbjct: 201  KANDVSEACKGFCNIYPGRINLVPPSEVSHLLSSRNKSCGISQGSWVRMKSGKYKGDLAQ 260

Query: 667  VVDYDEARKRATIKLVPRIDLQAIAKKYGGGVSLKEAAVPAPRLISSQELEHFRSHIEIR 846
            VV+ D+ RKR  IKL+PRIDLQAI+KK+GGG+SLK AAVPAPRLISS EL+ FR  IE R
Sbjct: 261  VVNLDDGRKRVMIKLIPRIDLQAISKKFGGGLSLKHAAVPAPRLISSHELDEFRPLIETR 320

Query: 847  RDRHSGEYFEILDGLMLKDGFLYKKVSIASIVFWGVQPSKDELLKFTEMSKADEEDVSWL 1026
            RDR SGE FE+LDG+MLKDG++YK VS  S+VFWGVQPS+ ELLKF+ ++K D ED+ W+
Sbjct: 321  RDRQSGEVFEVLDGMMLKDGYMYKWVSNGSVVFWGVQPSESELLKFSNVNKDDSEDLDWV 380

Query: 1027 STVYNVRKKMKSSEAADSKGASELGNGFILHDLVLFGRKGFGVXXXXXXXXXXXXXXXXE 1206
            S+VY+ RKK++ ++ +D+   +   N + LHDLVLFG+K FGV                E
Sbjct: 381  SSVYSGRKKVRLTDDSDNVATTSRKNEYKLHDLVLFGQKDFGVIVTVEKDGVRILKGGTE 440

Query: 1207 GQEVMTIKSEDIKGHCVDKMFTASDRHRKTIYINDTVKVLKGPLEGREGVVRHMYKGTLF 1386
            G  V+T++ +DIK  CVDKMFTA DRH KTI +ND VKVL+G LEGR+G+V+H+Y+G++F
Sbjct: 441  GSAVVTLRKQDIKSGCVDKMFTALDRHSKTISVNDIVKVLEGSLEGRQGIVKHLYRGSIF 500

Query: 1387 IYDENQEENSGIFCAKSDLCENITPPKDS--SFRKG--GNKSSSSFNQSPVRSCEQEDSS 1554
            IYDEN+ ENSG FCAKS+ CE I   ++S  SF     G+ S+S F++ P  S E +DSS
Sbjct: 501  IYDENETENSGFFCAKSESCEKIKKSRESVNSFDDNLQGDGSASLFSEPPTISFENQDSS 560

Query: 1555 YTFSRNRHSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQF 1734
                R R  + +  FSIGQTLRI KGPLKGYLCRVVRI+RS+VTVKLDSLVK+ITV+ +F
Sbjct: 561  SGAGRRRQYDRDSLFSIGQTLRICKGPLKGYLCRVVRIFRSEVTVKLDSLVKIITVDAKF 620

Query: 1735 LSIPNIKRDFAAEMPTDIFGTQER-FTGGLSGNG-EQTVVTSSWDG-----ASSSWQALS 1893
            LS+P  KRD +    +D+FGTQE    G  S +G E     SSWD       S  WQ  S
Sbjct: 621  LSVPTRKRDDSTGAASDLFGTQEMPSIGPFSADGTESQPGRSSWDSPLPSFGSDGWQPFS 680

Query: 1894 TSTL-FGNNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHASIVAGDHEGSDPWGS 2070
             S L    N D KT+     DPWGSKV       +Q AD W ++A+  +GD   S  W  
Sbjct: 681  ASKLSAAGNTDNKTDD---VDPWGSKVK-----SDQSADTW-ANAAAPSGDQNSS--WDK 729

Query: 2071 KLVPVATDTEQGADPWGSKAS--ISAGDKEQGADAWGRNMAGASTEKEERADPWGGKTVL 2244
                 A+     AD W + ++   + G ++  +DA G        EKE        KT+ 
Sbjct: 730  STTNAASGQ---ADTWQNNSNDWSNKGSQKSTSDAGG-------WEKE--------KTLA 771

Query: 2245 GDSSHSDTAFGSWVKVS----STSGEHNSWNKSEGGGFEKDGDGWNKP--CVKTTPPTAK 2406
             DS  S   +G+  K+S    S +G  N+W+K+     +  G  WN+P    K+   T+K
Sbjct: 772  SDSGGS---WGTGNKISNLDNSKTGGDNAWDKASNDKDKGKGSSWNEPNNWTKSEAVTSK 828

Query: 2407 ADDKQGADPWGSKVSVTARDD 2469
             D       W  K    A DD
Sbjct: 829  TDS------WDVKGKAIAMDD 843


>ref|XP_020091604.1| protein RNA-directed DNA methylation 3 isoform X2 [Ananas comosus]
          Length = 1714

 Score =  695 bits (1794), Expect = 0.0
 Identities = 388/801 (48%), Positives = 509/801 (63%), Gaps = 20/801 (2%)
 Frame = +1

Query: 127  RSEGKEFRSAGKPQYLPFLVKXXXXXXXXXXXXIKDRYGRGSEYAVYDEDPKECDDGVSV 306
            ++E ++ +   +P +LPF VK            IKDRYGR S+Y V+ ED KE  D VS 
Sbjct: 81   KAENEDLKGTARPPHLPFFVKEEELSGDELEELIKDRYGRSSKYVVHAEDSKESGDEVSA 140

Query: 307  ELSAEDPKIWRVKCMVGREQQMVLSLMHKYADLQRLGTKMEIISAFTLEHVKGYVYIEAD 486
                +DP +W++KCM+GRE+QM    M K+ DL  LG K++I+SAF L+HVKG+V++EAD
Sbjct: 141  ADLMKDPTVWKIKCMIGRERQMAFCFMQKFVDLDCLGNKLQIVSAFALDHVKGFVFVEAD 200

Query: 487  KACDIVEACKGFFNIYATRMGLVPSNDIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 666
            KA D+ EACKGF NIY  R+ LVP +++ HLLS+RNK C IS+G+WVRMK+G YKGDL Q
Sbjct: 201  KANDVSEACKGFCNIYPGRINLVPPSEVSHLLSSRNKSCGISQGSWVRMKSGKYKGDLAQ 260

Query: 667  VVDYDEARKRATIKLVPRIDLQAIAKKYGGGVSLKEAAVPAPRLISSQELEHFRSHIEIR 846
            VV+ D+ RKR  IKL+PRIDLQAI+KK+GGG+SLK AAVPAPRLISS EL+ FR  IE R
Sbjct: 261  VVNLDDGRKRVMIKLIPRIDLQAISKKFGGGLSLKHAAVPAPRLISSHELDEFRPLIETR 320

Query: 847  RDRHSGEYFEILDGLMLKDGFLYKKVSIASIVFWGVQPSKDELLKFTEMSKADEEDVSWL 1026
            RDR SGE FE+LDG+MLKDG++YK VS  S+VFWGVQPS+ ELLKF+ ++K D ED+ W+
Sbjct: 321  RDRQSGEVFEVLDGMMLKDGYMYKWVSNGSVVFWGVQPSESELLKFSNVNKDDSEDLDWV 380

Query: 1027 STVYNVRKKMKSSEAADSKGASELGNGFILHDLVLFGRKGFGVXXXXXXXXXXXXXXXXE 1206
            S+VY+ RKK++ ++ +D+   +   N + LHDLVLFG+K FGV                E
Sbjct: 381  SSVYSGRKKVRLTDDSDNVATTSRKNEYKLHDLVLFGQKDFGVIVTVEKDGVRILKGGTE 440

Query: 1207 GQEVMTIKSEDIKGHCVDKMFTASDRHRKTIYINDTVKVLKGPLEGREGVVRHMYKGTLF 1386
            G  V+T++ +DIK  CVDKMFTA DRH KTI +ND VKVL+G LEGR+G+V+H+Y+G++F
Sbjct: 441  GSAVVTLRKQDIKSGCVDKMFTALDRHSKTISVNDIVKVLEGSLEGRQGIVKHLYRGSIF 500

Query: 1387 IYDENQEENSGIFCAKSDLCENITPPKDS--SFRKG--GNKSSSSFNQSPVRSCEQEDSS 1554
            IYDEN+ ENSG FCAKS+ CE I   ++S  SF     G+ S+S F++ P  S E +DSS
Sbjct: 501  IYDENETENSGFFCAKSESCEKIKKSRESVNSFDDNLQGDGSASLFSEPPTISFENQDSS 560

Query: 1555 YTFSRNRHSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQF 1734
                R R  + +  FSIGQTLRI KGPLKGYLCRVVRI+RS+VTVKLDSLVK+ITV+ +F
Sbjct: 561  SGAGRRRQYDRDSLFSIGQTLRICKGPLKGYLCRVVRIFRSEVTVKLDSLVKIITVDAKF 620

Query: 1735 LSIPNIKRDFAAEMPTDIFGTQER-FTGGLSGNG-EQTVVTSSWDG-----ASSSWQALS 1893
            LS+P  KRD +    +D+FGTQE    G  S +G E     SSWD       S  WQ  S
Sbjct: 621  LSVPTRKRDDSTGAASDLFGTQEMPSIGPFSADGTESQPGRSSWDSPLPSFGSDGWQPFS 680

Query: 1894 TSTL-FGNNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHASIVAGDHEGSDPWGS 2070
             S L    N D KT+     DPWGSKV       +Q AD W ++A+  +GD   S  W  
Sbjct: 681  ASKLSAAGNTDNKTDD---VDPWGSKVK-----SDQSADTW-ANAAAPSGDQNSS--WDK 729

Query: 2071 KLVPVATDTEQGADPWGSKAS--ISAGDKEQGADAWGRNMAGASTEKEERADPWGGKTVL 2244
                 A+     AD W + ++   + G ++  +DA G        EKE        KT+ 
Sbjct: 730  STTNAASGQ---ADTWQNNSNDWSNKGSQKSTSDAGG-------WEKE--------KTLA 771

Query: 2245 GDSSHSDTAFGSWVKVS----STSGEHNSWNKSEGGGFEKDGDGWNKP--CVKTTPPTAK 2406
             DS  S   +G+  K+S    S +G  N+W+K+     +  G  WN+P    K+   T+K
Sbjct: 772  SDSGGS---WGTGNKISNLDNSKTGGDNAWDKASNDKDKGKGSSWNEPNNWTKSEAVTSK 828

Query: 2407 ADDKQGADPWGSKVSVTARDD 2469
             D       W  K    A DD
Sbjct: 829  TDS------WDVKGKAIAMDD 843


>ref|XP_020091602.1| protein RNA-directed DNA methylation 3 isoform X1 [Ananas comosus]
          Length = 1715

 Score =  695 bits (1794), Expect = 0.0
 Identities = 388/801 (48%), Positives = 509/801 (63%), Gaps = 20/801 (2%)
 Frame = +1

Query: 127  RSEGKEFRSAGKPQYLPFLVKXXXXXXXXXXXXIKDRYGRGSEYAVYDEDPKECDDGVSV 306
            ++E ++ +   +P +LPF VK            IKDRYGR S+Y V+ ED KE  D VS 
Sbjct: 81   KAENEDLKGTARPPHLPFFVKEEELSGDELEELIKDRYGRSSKYVVHAEDSKESGDEVSA 140

Query: 307  ELSAEDPKIWRVKCMVGREQQMVLSLMHKYADLQRLGTKMEIISAFTLEHVKGYVYIEAD 486
                +DP +W++KCM+GRE+QM    M K+ DL  LG K++I+SAF L+HVKG+V++EAD
Sbjct: 141  ADLMKDPTVWKIKCMIGRERQMAFCFMQKFVDLDCLGNKLQIVSAFALDHVKGFVFVEAD 200

Query: 487  KACDIVEACKGFFNIYATRMGLVPSNDIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 666
            KA D+ EACKGF NIY  R+ LVP +++ HLLS+RNK C IS+G+WVRMK+G YKGDL Q
Sbjct: 201  KANDVSEACKGFCNIYPGRINLVPPSEVSHLLSSRNKSCGISQGSWVRMKSGKYKGDLAQ 260

Query: 667  VVDYDEARKRATIKLVPRIDLQAIAKKYGGGVSLKEAAVPAPRLISSQELEHFRSHIEIR 846
            VV+ D+ RKR  IKL+PRIDLQAI+KK+GGG+SLK AAVPAPRLISS EL+ FR  IE R
Sbjct: 261  VVNLDDGRKRVMIKLIPRIDLQAISKKFGGGLSLKHAAVPAPRLISSHELDEFRPLIETR 320

Query: 847  RDRHSGEYFEILDGLMLKDGFLYKKVSIASIVFWGVQPSKDELLKFTEMSKADEEDVSWL 1026
            RDR SGE FE+LDG+MLKDG++YK VS  S+VFWGVQPS+ ELLKF+ ++K D ED+ W+
Sbjct: 321  RDRQSGEVFEVLDGMMLKDGYMYKWVSNGSVVFWGVQPSESELLKFSNVNKDDSEDLDWV 380

Query: 1027 STVYNVRKKMKSSEAADSKGASELGNGFILHDLVLFGRKGFGVXXXXXXXXXXXXXXXXE 1206
            S+VY+ RKK++ ++ +D+   +   N + LHDLVLFG+K FGV                E
Sbjct: 381  SSVYSGRKKVRLTDDSDNVATTSRKNEYKLHDLVLFGQKDFGVIVTVEKDGVRILKGGTE 440

Query: 1207 GQEVMTIKSEDIKGHCVDKMFTASDRHRKTIYINDTVKVLKGPLEGREGVVRHMYKGTLF 1386
            G  V+T++ +DIK  CVDKMFTA DRH KTI +ND VKVL+G LEGR+G+V+H+Y+G++F
Sbjct: 441  GSAVVTLRKQDIKSGCVDKMFTALDRHSKTISVNDIVKVLEGSLEGRQGIVKHLYRGSIF 500

Query: 1387 IYDENQEENSGIFCAKSDLCENITPPKDS--SFRKG--GNKSSSSFNQSPVRSCEQEDSS 1554
            IYDEN+ ENSG FCAKS+ CE I   ++S  SF     G+ S+S F++ P  S E +DSS
Sbjct: 501  IYDENETENSGFFCAKSESCEKIKKSRESVNSFDDNLQGDGSASLFSEPPTISFENQDSS 560

Query: 1555 YTFSRNRHSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQF 1734
                R R  + +  FSIGQTLRI KGPLKGYLCRVVRI+RS+VTVKLDSLVK+ITV+ +F
Sbjct: 561  SGAGRRRQYDRDSLFSIGQTLRICKGPLKGYLCRVVRIFRSEVTVKLDSLVKIITVDAKF 620

Query: 1735 LSIPNIKRDFAAEMPTDIFGTQER-FTGGLSGNG-EQTVVTSSWDG-----ASSSWQALS 1893
            LS+P  KRD +    +D+FGTQE    G  S +G E     SSWD       S  WQ  S
Sbjct: 621  LSVPTRKRDDSTGAASDLFGTQEMPSIGPFSADGTESQPGRSSWDSPLPSFGSDGWQPFS 680

Query: 1894 TSTL-FGNNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHASIVAGDHEGSDPWGS 2070
             S L    N D KT+     DPWGSKV       +Q AD W ++A+  +GD   S  W  
Sbjct: 681  ASKLSAAGNTDNKTDD---VDPWGSKVK-----SDQSADTW-ANAAAPSGDQNSS--WDK 729

Query: 2071 KLVPVATDTEQGADPWGSKAS--ISAGDKEQGADAWGRNMAGASTEKEERADPWGGKTVL 2244
                 A+     AD W + ++   + G ++  +DA G        EKE        KT+ 
Sbjct: 730  STTNAASGQ---ADTWQNNSNDWSNKGSQKSTSDAGG-------WEKE--------KTLA 771

Query: 2245 GDSSHSDTAFGSWVKVS----STSGEHNSWNKSEGGGFEKDGDGWNKP--CVKTTPPTAK 2406
             DS  S   +G+  K+S    S +G  N+W+K+     +  G  WN+P    K+   T+K
Sbjct: 772  SDSGGS---WGTGNKISNLDNSKTGGDNAWDKASNDKDKGKGSSWNEPNNWTKSEAVTSK 828

Query: 2407 ADDKQGADPWGSKVSVTARDD 2469
             D       W  K    A DD
Sbjct: 829  TDS------WDVKGKAIAMDD 843


>gb|OAY66311.1| Protein RNA-directed DNA methylation 3 [Ananas comosus]
          Length = 1701

 Score =  687 bits (1772), Expect = 0.0
 Identities = 387/800 (48%), Positives = 506/800 (63%), Gaps = 19/800 (2%)
 Frame = +1

Query: 127  RSEGKEFRSAGKPQYLPFLVKXXXXXXXXXXXXIKDRYGRGSEYAVYDEDPKECDDGVSV 306
            ++E ++ +   +P +LPF VK            IKDRYGR S+Y V+ ED KE  D VS 
Sbjct: 81   KAENEDLKGTARPPHLPFFVKEEELSGDELEELIKDRYGRSSKYVVHAEDSKESGDEVSA 140

Query: 307  ELSAEDPKIWRVKCMVGREQQMVLSLMHKYADLQRLGTKMEIISAFTLEHVKGYVYIEAD 486
                +DP +W++KCM+GRE+QM    M K+ DL  LG K++I+SAF L+HVKG+V++EAD
Sbjct: 141  ADLMKDPTVWKIKCMIGRERQMAFCFMQKFVDLDCLGNKLQIVSAFALDHVKGFVFVEAD 200

Query: 487  KACDIVEACKGFFNIYATRMGLVPSNDIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQ 666
            KA D+ EACKGF NIY  R+ LVP +++ HLLS+RNK C IS+G+WVRMK+G YKGDL Q
Sbjct: 201  KANDVSEACKGFCNIYPGRINLVPPSEVSHLLSSRNKSCGISQGSWVRMKSGKYKGDLAQ 260

Query: 667  VVDYDEARKRATIKLVPRIDLQAIAKKYGGGVSLKEAAVPAPRLISSQELEHFRSHIEIR 846
            VV+ D+ RKR  IKL+PRIDLQAI+KK+GGG+SLK AAVPAPRLISS ELE     IE R
Sbjct: 261  VVNLDDGRKRVMIKLIPRIDLQAISKKFGGGLSLKHAAVPAPRLISSHELEPL---IETR 317

Query: 847  RDRHSGEYFEILDGLMLKDGFLYKKVSIASIVFWGVQPSKDELLKFTEMSKADEEDVSWL 1026
            RDR SGE FE+LDG+MLKDG++YK VS  S+VFWGVQPS+ ELLKF+ ++K D ED+ W+
Sbjct: 318  RDRQSGEVFEVLDGMMLKDGYMYKWVSNGSVVFWGVQPSESELLKFSNVNKDDSEDLDWV 377

Query: 1027 STVYNVRKKMKSSEAADSKGASELGNGFILHDLVLFGRKGFGVXXXXXXXXXXXXXXXXE 1206
            S+VY+ RKK++ ++ +D+   +   N + LHDLVLFG+K FGV                E
Sbjct: 378  SSVYSGRKKVRLTDDSDNVATTSRKNEYKLHDLVLFGQKDFGVIVTVEKDGVRILKGGTE 437

Query: 1207 GQEVMTIKSEDIKGHCVDKMFTASDRHRKTIYINDTVKVLKGPLEGREGVVRHMYKGTLF 1386
            G  V+T++ +DIK  CVDKMFTA DRH KTI +ND VKVL+G LEGR+G+V+H+Y+G++F
Sbjct: 438  GSAVVTLRKQDIKSGCVDKMFTALDRHSKTISVNDIVKVLEGSLEGRQGIVKHLYRGSIF 497

Query: 1387 IYDENQEENSGIFCAKSDLCENITPPKDS--SFRKG-GNKSSSSFNQSPVRSCEQEDSSY 1557
            IYDEN+ ENSG FCAKS+ CE I   ++S  SF    G+ S+S F++ P  S E +DSS 
Sbjct: 498  IYDENETENSGFFCAKSESCEKIKKSRESVNSFDDNLGDGSASLFSEPPTISFENQDSSS 557

Query: 1558 TFSRNRHSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVEEQFL 1737
               R R  + +  FSIGQTLRI KGPLKGYLCRVVRI+RS+VTVKLDSLVK+ITV+ +FL
Sbjct: 558  GAGRRRQYDRDSLFSIGQTLRICKGPLKGYLCRVVRIFRSEVTVKLDSLVKIITVDAKFL 617

Query: 1738 SIPNIKRDFAAEMPTDIFGTQER-FTGGLSGNG-EQTVVTSSWDG-----ASSSWQALST 1896
            S+P  KRD +    +D+FGTQE    G  S +G E     SSWD       S  WQ  S 
Sbjct: 618  SVPTRKRDDSTGAASDLFGTQEMPSIGPFSADGTESQPGRSSWDSPLPSFGSDGWQPFSA 677

Query: 1897 STL-FGNNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHASIVAGDHEGSDPWGSK 2073
            S L    N D KT+     DPWGSKV       +Q AD W ++A+  +GD   S  W   
Sbjct: 678  SKLSAAGNTDNKTDD---VDPWGSKVK-----SDQSADTW-ANAAAPSGDQNSS--WDKS 726

Query: 2074 LVPVATDTEQGADPWGSKAS--ISAGDKEQGADAWGRNMAGASTEKEERADPWGGKTVLG 2247
                A+     AD W + ++   + G ++  +DA G        EKE        KT+  
Sbjct: 727  TTNAASGQ---ADTWQNNSNDWSNKGSQKSTSDAGG-------WEKE--------KTLAS 768

Query: 2248 DSSHSDTAFGSWVKVS----STSGEHNSWNKSEGGGFEKDGDGWNKP--CVKTTPPTAKA 2409
            DS  S   +G+  K S    S +G  N+W+K+     +  G  WN+P    K+   T+K 
Sbjct: 769  DSGGS---WGTGNKTSNLDNSKTGGDNAWDKASNDKDKGKGSSWNEPNNWTKSEAVTSKT 825

Query: 2410 DDKQGADPWGSKVSVTARDD 2469
            D       W  K    A DD
Sbjct: 826  DS------WDVKGKAIAMDD 839


>gb|PAN18741.1| hypothetical protein PAHAL_C02415 [Panicum hallii]
          Length = 1664

 Score =  648 bits (1672), Expect = 0.0
 Identities = 378/839 (45%), Positives = 503/839 (59%), Gaps = 50/839 (5%)
 Frame = +1

Query: 112  FSKGGRSEGKEFRSAGKPQYLPFLVKXXXXXXXXXXXXIKDRYGRGSEYAVYDEDPKECD 291
            F+ G   +    +   +   LPFLVK            I+ RY  G +YA      +E D
Sbjct: 82   FTGGEHVQNLSHKRTERSHPLPFLVKEEELSGDELEEFIRTRYSNGVKYAADRSYSREDD 141

Query: 292  DGVSVELSAEDPKIWRVKCMVGREQQMVLSLMHKYADLQRLGTKMEIISAFTLEHVKGYV 471
            D   ++ + ++P IWRVKCMVGRE+QM    M K+ DLQ++GTK+ II+AF L+HV+G+V
Sbjct: 142  DIFPIDGALKEPTIWRVKCMVGRERQMAFCFMQKFVDLQKIGTKVPIITAFALDHVRGFV 201

Query: 472  YIEADKACDIVEACKGFFNIYATRMGLVPSNDIPHLLSTRNKPCTISKGTWVRMKNGNYK 651
            ++EA+KACD+ EACKGF ++YA+R+  VP+ ++P LLS+R KP  IS+GTWVRMKNGNYK
Sbjct: 202  FVEAEKACDVTEACKGFCSVYASRITSVPAAEVPSLLSSRTKPFEISRGTWVRMKNGNYK 261

Query: 652  GDLGQVVDYDEARKRATIKLVPRIDLQAIAKKYGGGVSLKEAAVPAPRLISSQELEHFRS 831
            GDL QVV  D  RKR  IK++PR+DL AI+KKYGG +SLK AAVPAPRLISSQELE FR 
Sbjct: 262  GDLAQVVSVDNGRKRVMIKIIPRVDLHAISKKYGGAISLKGAAVPAPRLISSQELEFFRP 321

Query: 832  HIEIRRDRHSGEYFEILDGLMLKDGFLYKKVSIASIVFWGVQPSKDELLKFTE--MSKAD 1005
            HIE++RDR +GE FE+LDGLM KDGFLYK+V+++S+++WG+QP++ ELLKF+   +++A 
Sbjct: 322  HIEMKRDRQTGEVFEVLDGLMFKDGFLYKRVALSSLIYWGIQPTETELLKFSSSPINRAS 381

Query: 1006 EEDVSWLSTVYNVRK---------------KMKSSEAADSKGASE---LGNGFILHDLVL 1131
             +D+ W+S++Y  +K               KMKSS+ + +  ++E     + F LHDLVL
Sbjct: 382  ADDLDWVSSIYGPKKRNIPAKPDIKSSSSSKMKSSKTSKASISTEDFDDNDEFNLHDLVL 441

Query: 1132 FGRKGFGVXXXXXXXXXXXXXXXXEGQEVMTIKSEDIKGHCVDKMFTASDRHRKTIYIND 1311
            FGRK FGV                EG  V T+K  DIK  CVDKMFTA DR  K + IND
Sbjct: 442  FGRKDFGVIIAIEKDGFRILKGGPEGSAV-TVKKNDIKKSCVDKMFTAVDRQNKIVSIND 500

Query: 1312 TVKVLKGPLEGREGVVRHMYKGTLFIYDENQEENSGIFCAKSDLCENITPPKDSSFRKGG 1491
            TV VL+GP +G++GVV+H+Y G LFIY+E++ EN G FCA+   CEN+   KD     GG
Sbjct: 501  TVNVLEGPFQGKQGVVKHLYMGILFIYNESESENCGFFCAQCGSCENVKKRKD----LGG 556

Query: 1492 NKSSSSFNQSPV---RSCEQEDSSYTFSRNRHSESNQPFSIGQTLRIRKGPLKGYLCRVV 1662
            + + +  N  P+    S EQ +   T  R   S   Q FSIGQ LRIRKGPLKGYLCRVV
Sbjct: 557  STTENLDNPFPMFAEPSYEQNEHRGT-ERPYRSTREQLFSIGQMLRIRKGPLKGYLCRVV 615

Query: 1663 RIYRSDVTVKLDSLVKVITVEEQFLSIPNIKRDFAAEMPTDIFGTQERFTGGLSGNGEQT 1842
            RI+R+DVTVKLDSL+K++TV+ +FLS+P  + D  +  P   FG+Q+  T       E+T
Sbjct: 616  RIFRNDVTVKLDSLLKIVTVQAEFLSVPANRGDNLSGAPAGNFGSQD--TSFFGSEAEKT 673

Query: 1843 VVTSSWDG-----ASSSWQALSTSTLFGNN------ND---QKTEQEQGADPWGSKVSLA 1980
                SWD       S SWQ  S+STL   N      ND   +K+  E  +DPWG K    
Sbjct: 674  ----SWDNGLPSFGSDSWQPFSSSTLPVQNTGGESENDPWSKKSSAEGESDPWGKKTD-- 727

Query: 1981 AGDREQGADPWGSHASIVA-GDHEGSDPWGSKLVPVATDTEQGADPWGSKASISA-GDKE 2154
             GD     DPWG+  +  A GD   SDPWG+K+ P A   +  +DPWG+K + SA GD  
Sbjct: 728  -GD----PDPWGNKVAHSADGD---SDPWGNKVAPSA---DGDSDPWGNKVAPSAYGD-- 774

Query: 2155 QGADAWGRNMAGASTEKEERADPWGGKTVLG-----------DSSHSDTAFGSWVKVSST 2301
              +D WG+ +    T     +D WG KT                S SD A+G    V  +
Sbjct: 775  --SDPWGKKVV---TPAHGDSDAWGKKTTSSAVGVWNAGAAQKESSSDNAWGKQAGVGRS 829

Query: 2302 SGEHNSWNKSEGGGFEKDGDGWNKPCVKTTPPTAKADDKQGADPWGSKVSVTARDDTQG 2478
                +SW+ +      +  D W + C +       AD    ADPWGSKV      DT+G
Sbjct: 830  DAAGSSWDGTVVNKESEKSDNWGEAC-RVVDMGTGAD----ADPWGSKVKAI---DTEG 880



 Score = 68.9 bits (167), Expect = 5e-08
 Identities = 52/184 (28%), Positives = 74/184 (40%), Gaps = 14/184 (7%)
 Frame = +1

Query: 1867 ASSSWQALSTSTLFGNN----------NDQKTEQEQGADPWGSKVSLAAGDREQGADPWG 2016
            ++  W +   +  FG N          N     +EQ  D W SK++ A  +   G   W 
Sbjct: 1175 SNQPWSSSGVTKSFGENKPSTWNSSKDNKPSVGKEQQNDTWASKMTSAGAEDNSGG--WN 1232

Query: 2017 SHAS---IVAGDHEGSDPWGSKLVPVATDTEQGADPWGSKASISAGDKEQGADAWGRNMA 2187
            + A       G+   +DPW +K      D EQ  DPW SK   S G  +  + +W  N  
Sbjct: 1233 TRAKDSCTDGGEERQNDPWANK-AGTNKDKEQETDPWTSKVPSSVGSDDNNS-SW--NTT 1288

Query: 2188 GASTEKEERA-DPWGGKTVLGDSSHSDTAFGSWVKVSSTSGEHNSWNKSEGGGFEKDGDG 2364
               T  EE+A DPW  K    +   +D    SW   SS   + +SW+K     F      
Sbjct: 1289 AKDTPSEEKAGDPWSSKGSNDNIKKTD----SWGAGSSGGNQESSWSKP---NFSLGDQA 1341

Query: 2365 WNKP 2376
            W+KP
Sbjct: 1342 WSKP 1345


>gb|PAN18742.1| hypothetical protein PAHAL_C02415 [Panicum hallii]
          Length = 1679

 Score =  648 bits (1672), Expect = 0.0
 Identities = 378/839 (45%), Positives = 503/839 (59%), Gaps = 50/839 (5%)
 Frame = +1

Query: 112  FSKGGRSEGKEFRSAGKPQYLPFLVKXXXXXXXXXXXXIKDRYGRGSEYAVYDEDPKECD 291
            F+ G   +    +   +   LPFLVK            I+ RY  G +YA      +E D
Sbjct: 82   FTGGEHVQNLSHKRTERSHPLPFLVKEEELSGDELEEFIRTRYSNGVKYAADRSYSREDD 141

Query: 292  DGVSVELSAEDPKIWRVKCMVGREQQMVLSLMHKYADLQRLGTKMEIISAFTLEHVKGYV 471
            D   ++ + ++P IWRVKCMVGRE+QM    M K+ DLQ++GTK+ II+AF L+HV+G+V
Sbjct: 142  DIFPIDGALKEPTIWRVKCMVGRERQMAFCFMQKFVDLQKIGTKVPIITAFALDHVRGFV 201

Query: 472  YIEADKACDIVEACKGFFNIYATRMGLVPSNDIPHLLSTRNKPCTISKGTWVRMKNGNYK 651
            ++EA+KACD+ EACKGF ++YA+R+  VP+ ++P LLS+R KP  IS+GTWVRMKNGNYK
Sbjct: 202  FVEAEKACDVTEACKGFCSVYASRITSVPAAEVPSLLSSRTKPFEISRGTWVRMKNGNYK 261

Query: 652  GDLGQVVDYDEARKRATIKLVPRIDLQAIAKKYGGGVSLKEAAVPAPRLISSQELEHFRS 831
            GDL QVV  D  RKR  IK++PR+DL AI+KKYGG +SLK AAVPAPRLISSQELE FR 
Sbjct: 262  GDLAQVVSVDNGRKRVMIKIIPRVDLHAISKKYGGAISLKGAAVPAPRLISSQELEFFRP 321

Query: 832  HIEIRRDRHSGEYFEILDGLMLKDGFLYKKVSIASIVFWGVQPSKDELLKFTE--MSKAD 1005
            HIE++RDR +GE FE+LDGLM KDGFLYK+V+++S+++WG+QP++ ELLKF+   +++A 
Sbjct: 322  HIEMKRDRQTGEVFEVLDGLMFKDGFLYKRVALSSLIYWGIQPTETELLKFSSSPINRAS 381

Query: 1006 EEDVSWLSTVYNVRK---------------KMKSSEAADSKGASE---LGNGFILHDLVL 1131
             +D+ W+S++Y  +K               KMKSS+ + +  ++E     + F LHDLVL
Sbjct: 382  ADDLDWVSSIYGPKKRNIPAKPDIKSSSSSKMKSSKTSKASISTEDFDDNDEFNLHDLVL 441

Query: 1132 FGRKGFGVXXXXXXXXXXXXXXXXEGQEVMTIKSEDIKGHCVDKMFTASDRHRKTIYIND 1311
            FGRK FGV                EG  V T+K  DIK  CVDKMFTA DR  K + IND
Sbjct: 442  FGRKDFGVIIAIEKDGFRILKGGPEGSAV-TVKKNDIKKSCVDKMFTAVDRQNKIVSIND 500

Query: 1312 TVKVLKGPLEGREGVVRHMYKGTLFIYDENQEENSGIFCAKSDLCENITPPKDSSFRKGG 1491
            TV VL+GP +G++GVV+H+Y G LFIY+E++ EN G FCA+   CEN+   KD     GG
Sbjct: 501  TVNVLEGPFQGKQGVVKHLYMGILFIYNESESENCGFFCAQCGSCENVKKRKD----LGG 556

Query: 1492 NKSSSSFNQSPV---RSCEQEDSSYTFSRNRHSESNQPFSIGQTLRIRKGPLKGYLCRVV 1662
            + + +  N  P+    S EQ +   T  R   S   Q FSIGQ LRIRKGPLKGYLCRVV
Sbjct: 557  STTENLDNPFPMFAEPSYEQNEHRGT-ERPYRSTREQLFSIGQMLRIRKGPLKGYLCRVV 615

Query: 1663 RIYRSDVTVKLDSLVKVITVEEQFLSIPNIKRDFAAEMPTDIFGTQERFTGGLSGNGEQT 1842
            RI+R+DVTVKLDSL+K++TV+ +FLS+P  + D  +  P   FG+Q+  T       E+T
Sbjct: 616  RIFRNDVTVKLDSLLKIVTVQAEFLSVPANRGDNLSGAPAGNFGSQD--TSFFGSEAEKT 673

Query: 1843 VVTSSWDG-----ASSSWQALSTSTLFGNN------ND---QKTEQEQGADPWGSKVSLA 1980
                SWD       S SWQ  S+STL   N      ND   +K+  E  +DPWG K    
Sbjct: 674  ----SWDNGLPSFGSDSWQPFSSSTLPVQNTGGESENDPWSKKSSAEGESDPWGKKTD-- 727

Query: 1981 AGDREQGADPWGSHASIVA-GDHEGSDPWGSKLVPVATDTEQGADPWGSKASISA-GDKE 2154
             GD     DPWG+  +  A GD   SDPWG+K+ P A   +  +DPWG+K + SA GD  
Sbjct: 728  -GD----PDPWGNKVAHSADGD---SDPWGNKVAPSA---DGDSDPWGNKVAPSAYGD-- 774

Query: 2155 QGADAWGRNMAGASTEKEERADPWGGKTVLG-----------DSSHSDTAFGSWVKVSST 2301
              +D WG+ +    T     +D WG KT                S SD A+G    V  +
Sbjct: 775  --SDPWGKKVV---TPAHGDSDAWGKKTTSSAVGVWNAGAAQKESSSDNAWGKQAGVGRS 829

Query: 2302 SGEHNSWNKSEGGGFEKDGDGWNKPCVKTTPPTAKADDKQGADPWGSKVSVTARDDTQG 2478
                +SW+ +      +  D W + C +       AD    ADPWGSKV      DT+G
Sbjct: 830  DAAGSSWDGTVVNKESEKSDNWGEAC-RVVDMGTGAD----ADPWGSKVKAI---DTEG 880



 Score = 65.5 bits (158), Expect = 6e-07
 Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 19/193 (9%)
 Frame = +1

Query: 1855 SWDGASSSWQALS--TSTLFGNNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHAS 2028
            SW G   +W A +  ++  + ++   K+  E     W S         EQ  DPW S  +
Sbjct: 1161 SW-GGGDNWNATNPPSNQPWSSSGVTKSFGENKPSTWNSSKDNKPSVGEQD-DPWASKVA 1218

Query: 2029 IVAGDHEGSDPWGSKLVPVATDTEQGADPWGSKASISAGDKEQGADAWGRNMAGASTEKE 2208
             + G  + +D W SK+     +   G     +K S + G +E+  D W  N AG + +KE
Sbjct: 1219 SIEGKEQQNDTWASKMTSAGAEDNSGGWNTRAKDSCTDGGEERQNDPWA-NKAGTNKDKE 1277

Query: 2209 ERADPWGGK---------------TVLGDSSHSDTAFGSWVKVSSTSG--EHNSWNKSEG 2337
            +  DPW  K               T   D+   + A   W    S     + +SW     
Sbjct: 1278 QETDPWTSKVPSSVGSDDNNSSWNTTAKDTPSEEKAGDPWSSKGSNDNIKKTDSWGAGSS 1337

Query: 2338 GGFEKDGDGWNKP 2376
            GG ++    W+KP
Sbjct: 1338 GGNQE--SSWSKP 1348


>gb|AQK94721.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 1116

 Score =  630 bits (1625), Expect = 0.0
 Identities = 363/818 (44%), Positives = 490/818 (59%), Gaps = 39/818 (4%)
 Frame = +1

Query: 112  FSKGGRSEGKEFRSAGKPQYLPFLVKXXXXXXXXXXXXIKDRYGRGSEYAVYDEDPKECD 291
            F+ G  ++    +   +   LPFLVK            IK+RY    +YA      +E D
Sbjct: 86   FTGGEHAQNLSHKRTERSHPLPFLVKEEELSGDELEEFIKNRYSNRVKYAADRSYSREDD 145

Query: 292  DGVSVELSAEDPKIWRVKCMVGREQQMVLSLMHKYADLQRLGTKMEIISAFTLEHVKGYV 471
            D  S++ + ++P IWRVKCMVGRE+QM    M K+ DL+++GTK+ II+AF L+H++G+V
Sbjct: 146  DIFSMDCALKEPTIWRVKCMVGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFV 205

Query: 472  YIEADKACDIVEACKGFFNIYATRMGLVPSNDIPHLLSTRNKPCTISKGTWVRMKNGNYK 651
            ++EA+KACD+ EACKGF ++Y +R+  VP+ ++P LLS+R KP  IS+GTW+RMKNGNYK
Sbjct: 206  FVEAEKACDVTEACKGFCSVYTSRITSVPAAEVPSLLSSRTKPFEISRGTWIRMKNGNYK 265

Query: 652  GDLGQVVDYDEARKRATIKLVPRIDLQAIAKKYGGGVSLKEAAVPAPRLISSQELEHFRS 831
            GDL QVV  D+ RK+  IK+VPR+DL AI+KK+GG VSLK AAVPAPRLISSQELE FR 
Sbjct: 266  GDLAQVVSVDDGRKKVMIKIVPRVDLHAISKKFGGAVSLKGAAVPAPRLISSQELEFFRP 325

Query: 832  HIEIRRDRHSGEYFEILDGLMLKDGFLYKKVSIASIVFWGVQPSKDELLKFTE--MSKAD 1005
            HIEI+RDR +GE FE+LDGLM KDGFLYKKV+++S+++WG+QP++ ELLKF+    ++A 
Sbjct: 326  HIEIKRDRQTGEVFEVLDGLMFKDGFLYKKVALSSLIYWGIQPTETELLKFSSSPSNRAS 385

Query: 1006 EEDVSWLSTVYNVRK--------------KMKSSEAADSKGASELGN-----GFILHDLV 1128
             +D+ WLS +Y  +K              K++SS+A+D K ++   N      F LHDLV
Sbjct: 386  ADDLDWLSGMYGSKKRNLPEKRDMESSSSKIRSSKASDLKASTSTENYDENDEFNLHDLV 445

Query: 1129 LFGRKGFGVXXXXXXXXXXXXXXXXEGQEVMTIKSEDIKGHCVDKMFTASDRHRKTIYIN 1308
            L+GRK FGV                EG  V  ++ +DIK  CVDKMFTA D  +KTI IN
Sbjct: 446  LYGRKDFGVIVAVEKDGFRILKGGPEGSAV-KVRKQDIKKGCVDKMFTAVDHQKKTISIN 504

Query: 1309 DTVKVLKGPLEGREGVVRHMYKGTLFIYDENQEENSGIFCAKSDLCENITPPKDSSFRKG 1488
            DTV V++GP +G++GVV+H+Y G LFIY+E++ EN G FCA+S  CE I     SS  + 
Sbjct: 505  DTVNVVEGPFQGKQGVVKHLYLGILFIYNESESENCGFFCAQSGSCEKIRKGLGSSTTES 564

Query: 1489 GNKSSSSFNQSPVRSCEQEDSSYTFSRNRHSESNQPFSIGQTLRIRKGPLKGYLCRVVRI 1668
             + ++  F   P  + EQ     T  R   S   Q FSIGQ LRIRKGPLKGYLCRVVRI
Sbjct: 565  SDFTTPMF---PEPAYEQNGHRDT-ERPYRSTREQLFSIGQMLRIRKGPLKGYLCRVVRI 620

Query: 1669 YRSDVTVKLDSLVKVITVEEQFLSIPNIKRDFAAEMPTDIFGTQE-RFTGGLSGNGEQTV 1845
            +R+DVTVKLDSL+K++TV+   LS+P  + D  +  P   FG+Q+  F G  +G      
Sbjct: 621  FRNDVTVKLDSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTSFFGSEAGK----- 675

Query: 1846 VTSSWDG-----ASSSWQALSTSTLFGNNNDQKTEQEQGADPWGSKVSLAAGDREQGADP 2010
              +SWD       S SWQ  S+STL   N   ++E    ADPW  K S      +  +DP
Sbjct: 676  --TSWDNGLPSFGSDSWQPFSSSTLSVQNAGGESE----ADPWSKKTS-----AKDDSDP 724

Query: 2011 WGSHASIVAGDHEGSDPWGSKLVPVATDTEQGADPWGSKASISAGDKEQGADAWGRNMAG 2190
            WG       GD   SD WG K       T+  +DPWG K ++SA D +  ++ WG+    
Sbjct: 725  WGKKTD---GD---SDRWGKK-------TDGDSDPWG-KEAVSAADGD--SNPWGKETVP 768

Query: 2191 ASTEKEERADPWGGKTVLGDSSHSD-----------TAFGSWVKVSSTSGEHNSWNKSEG 2337
            ++      +DPWG K V      SD           TA+     V  +    +SW+++  
Sbjct: 769  SAAGD---SDPWGKKVVSSADGDSDSWDTEKEGSGGTAWDKQAGVGGSDAAGSSWDRAVV 825

Query: 2338 GGFEKDGDGWNKPC-VKTTPPTAKADDKQGADPWGSKV 2448
               EK  D W + C V      A+AD     DPWGSKV
Sbjct: 826  NESEK-SDNWGEACRVMDMGTGAEAD----TDPWGSKV 858


>ref|XP_004961584.1| protein RNA-directed DNA methylation 3 [Setaria italica]
          Length = 1702

 Score =  644 bits (1662), Expect = 0.0
 Identities = 375/867 (43%), Positives = 514/867 (59%), Gaps = 80/867 (9%)
 Frame = +1

Query: 112  FSKGGRSEGKEFRSAGKPQYLPFLVKXXXXXXXXXXXXIKDRYGRGSEYAVYDEDPKECD 291
            F+ G  ++    + A +   LPFLVK            I+ RY  G  YA      +E D
Sbjct: 90   FTGGEHAQNLSSKRAERSHPLPFLVKEEELSGDELEEFIRKRYSNGVRYAADRNFSREDD 149

Query: 292  DGVSVELSAEDPKIWRVKCMVGREQQMVLSLMHKYADLQRLGTKMEIISAFTLEHVKGYV 471
            D   ++ + ++P IWRVKCMVGRE+QM    M K+ DLQ++GTK+ II+AF L+HV+G+V
Sbjct: 150  DIFPMDGALKEPTIWRVKCMVGRERQMAFCFMQKFVDLQKIGTKVPIITAFALDHVRGFV 209

Query: 472  YIEADKACDIVEACKGFFNIYATRMGLVPSNDIPHLLSTRNKPCTISKGTWVRMKNGNYK 651
            ++EA+KACD+ EACKGF ++YA+R+  VP+ ++P LLS+R KP  IS+GTWVRMKNGNYK
Sbjct: 210  FVEAEKACDVTEACKGFCSVYASRIISVPAAEVPSLLSSRTKPFEISRGTWVRMKNGNYK 269

Query: 652  GDLGQVVDYDEARKRATIKLVPRIDLQAIAKKYGGGVSLKEAAVPAPRLISSQELEHFRS 831
            GDL QVV  D+ RKR  IK++PR+DL AI++KYGG +SLKEA VPAPRLISSQELE FR 
Sbjct: 270  GDLAQVVSEDDGRKRVLIKIIPRVDLHAISRKYGGAISLKEAVVPAPRLISSQELEFFRP 329

Query: 832  HIEIRRDRHSGEYFEILDGLMLKDGFLYKKVSIASIVFWGVQPSKDELLKFTE--MSKAD 1005
            HIE++RDR +GE FE+LDGLM KDGFLYK+V+++S+++WG+QP++ ELLKF+   +++A 
Sbjct: 330  HIEMKRDRQTGEVFEVLDGLMFKDGFLYKRVALSSLIYWGIQPTETELLKFSSSPINRAS 389

Query: 1006 EEDVSWLSTVYNVRK--------------KMKSSEAADSKGASEL---GNGFILHDLVLF 1134
             +D+ W+S++Y  +K              K KSS+A+ +  ++E     + F LHDLVLF
Sbjct: 390  ADDLDWVSSIYGPKKRNLPAERGIKSPSSKTKSSKASKASTSTENYDDNDEFNLHDLVLF 449

Query: 1135 GRKGFGVXXXXXXXXXXXXXXXXEGQEVMTIKSEDIKGHCVDKMFTASDRHRKTIYINDT 1314
            GRK FGV                EG  V T+K +DIK  CVDKMFTA DR +K I INDT
Sbjct: 450  GRKDFGVIIAIEKDGLRILKGGPEGSAV-TVKKQDIKKGCVDKMFTAVDRQKKIISINDT 508

Query: 1315 VKVLKGPLEGREGVVRHMYKGTLFIYDENQEENSGIFCAKSDLCENITPPKDSSFRKGGN 1494
            V VL+GP +G++GVV+H+Y GTLFIY+E++ EN G FCA+   CEN+   K+SS  +  +
Sbjct: 509  VNVLEGPFQGKQGVVKHLYMGTLFIYNESESENCGFFCAQCGSCENVKKRKESSTTENLD 568

Query: 1495 KSSSSFNQSPVRSCEQEDSSYTFSRNRHSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYR 1674
                 F++ P    E  D+   +   R     Q FSIGQ LRIRKGPLKGYLCRVV+I+R
Sbjct: 569  NPIPMFSE-PYEQNEHRDTERPYRSTRE----QLFSIGQMLRIRKGPLKGYLCRVVKIFR 623

Query: 1675 SDVTVKLDSLVKVITVEEQFLSIPNIKRDFAAEMPTDIFGTQERFTGGLSGNGEQTVVTS 1854
            +DVTVKLDSL+K++TV+ +FLS+P  + D ++  P   FG+Q+    G   +       +
Sbjct: 624  NDVTVKLDSLLKIVTVQAEFLSVPANRGDNSSGAPAGNFGSQDTSFFGSEAD------KA 677

Query: 1855 SWDGA-----SSSWQALSTSTLFGNNNDQKTEQE--------------------QGADPW 1959
            SWD       S SWQ  S+STL   N   ++E +                      +DPW
Sbjct: 678  SWDNGLPSFGSDSWQPFSSSTLPAQNAGGESESDPWCKKSSAGGESDPWGKKTDSDSDPW 737

Query: 1960 GSKVSLAAGDREQGADPWGSHASIVAGDHEGSDPWGSKLVPVATDTEQGADPWGSKASIS 2139
            G+KV + +GD +  +DPWG    +VA     SDPWG K+V  A   +  +DPWG K    
Sbjct: 738  GNKV-VPSGDGD--SDPWGK--KVVAPADGDSDPWGKKVVVPA---DGDSDPWGKKVVAP 789

Query: 2140 AGDKEQGADAWGRNMAGASTEKEERADPWGGKTVL---GDS--------SHSDTAFGSWV 2286
            A   +  +D WG+ +   S   +  +DPWG K V    GDS        + +D     W 
Sbjct: 790  A---DGDSDPWGKKVMAPS---DGDSDPWGKKVVAPADGDSDPWGKKVVAPADGDSDPWA 843

Query: 2287 KVSSTSG-----------EHNS---WNKSEG-GGFEKDGDGW-----NKPCVKTT---PP 2397
            K +++S            E +S   W+K  G GG +  G  W     NK C K+      
Sbjct: 844  KNTTSSAFRVLNTGTTQKESSSGKVWDKQAGVGGSDAAGSSWDRTSVNKECEKSDNWGEA 903

Query: 2398 TAKADDKQG--ADPWGSKVSVTARDDT 2472
               AD   G  ADPWG+KV     + T
Sbjct: 904  CRVADMGTGGDADPWGNKVKAVDMEGT 930



 Score = 67.0 bits (162), Expect = 2e-07
 Identities = 57/213 (26%), Positives = 78/213 (36%), Gaps = 2/213 (0%)
 Frame = +1

Query: 1813 GGLSGNGEQTVVTSSWDGASSSWQALS--TSTLFGNNNDQKTEQEQGADPWGSKVSLAAG 1986
            GG S   + T    SW G   +W A +  ++  + ++   K+  E     W S       
Sbjct: 1195 GGSSDWNKDTSNKGSWGG--DNWNATNPPSNQPWSSSGGTKSYGENKPSTWNSSEDNKTS 1252

Query: 1987 DREQGADPWGSHASIVAGDHEGSDPWGSKLVPVATDTEQGADPWGSKASISAGDKEQGAD 2166
              EQ  DPW S  +   G  + +D W SK+     +   G     +K S S G +E   D
Sbjct: 1253 VGEQD-DPWASKVASTEGKEQRNDTWASKMTSAGAEDSSGGWNTKTKDSCSDGGEESQND 1311

Query: 2167 AWGRNMAGASTEKEERADPWGGKTVLGDSSHSDTAFGSWVKVSSTSGEHNSWNKSEGGGF 2346
            +W  N  G++  KE+  DPW                    KV ST G             
Sbjct: 1312 SWA-NKIGSNKGKEQETDPWAS------------------KVPSTVG------------- 1339

Query: 2347 EKDGDGWNKPCVKTTPPTAKADDKQGADPWGSK 2445
              D +G      K TP   KAD     DPW SK
Sbjct: 1340 SDDNNGSRSTTAKGTPSEEKAD-----DPWSSK 1367


>ref|XP_020682212.1| protein RNA-directed DNA methylation 3 [Dendrobium catenatum]
 gb|PKU72137.1| Putative transcription elongation factor SPT5 like 1 [Dendrobium
            catenatum]
          Length = 1946

 Score =  642 bits (1657), Expect = 0.0
 Identities = 376/814 (46%), Positives = 486/814 (59%), Gaps = 55/814 (6%)
 Frame = +1

Query: 148  RSAGKPQYLPFLVKXXXXXXXXXXXXIKDRYGRGSEYAVYDEDPKECDDGVSVELSAEDP 327
            R  GK   +PF +K            IK+RYG GS +  +DED KECD  + V  + +D 
Sbjct: 93   RGPGKSSPVPFFIKEEEMNDDELEEAIKERYG-GSGFVSFDEDVKECDQSLLVARATKDL 151

Query: 328  KIWRVKCMVGREQQMVLSLMHKYADLQRLGTKMEIISAFTLEHVKGYVYIEADKACDIVE 507
             +WRVKCM+GRE+Q    LM K+ DLQ++G K++I S F+L+HVKG+ Y+EAD+AC++ E
Sbjct: 152  SVWRVKCMMGRERQAAFCLMQKFVDLQKIGKKLQIFSVFSLDHVKGFFYVEADRACNVFE 211

Query: 508  ACKGFFNIYATRMGLVPSNDIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYDEA 687
            AC G   +Y +R+ LVP N+ P+LLS + K C I KG WVRMKNG YKGDL +VV  ++A
Sbjct: 212  ACNGLCILYPSRIELVPRNEAPNLLSIQRKACGIVKGMWVRMKNGKYKGDLAEVVLVNDA 271

Query: 688  RKRATIKLVPRIDLQAIAKKYGGGVSLKEAAVPAPRLISSQELEHFRSHIEIRRDRHSGE 867
            +KR TIKLVPRIDLQAI+KK+GGG SLK AA+PAPRLISS ELE FR HIE+RRDR +GE
Sbjct: 272  KKRVTIKLVPRIDLQAISKKFGGGTSLKAAAIPAPRLISSHELEDFRPHIEVRRDRETGE 331

Query: 868  YFEILDGLMLKDGFLYKKVSIASIVFWGVQPSKDELLKFTEMSKADEEDVSWLSTVYNVR 1047
             FE+LDGLMLKDG+LYKKVS+ S++ WGVQP+ DEL+KF E+ K + +DV WLS++Y  R
Sbjct: 332  IFEVLDGLMLKDGYLYKKVSMGSLIHWGVQPTSDELMKFEELDKDEVKDVDWLSSIYKAR 391

Query: 1048 KKM------------------------KSSEAADSKGASELGNGFILHDLVLFGRKGFGV 1155
             K                         K  E ++ K A +  NGF + DLVLFG+K  G+
Sbjct: 392  MKKKLPETSHQKNGEKYNQKDGEKSNPKVGEKSNQKDADKQINGFDIDDLVLFGKKSCGI 451

Query: 1156 XXXXXXXXXXXXXXXXEGQEVMTIKSEDIKGHCVDKMFTASDRHRKTIYINDTVKVLKGP 1335
                             G EV++I    IK  CVDK+FTA+DR  KTI I+D VKV +GP
Sbjct: 452  IIDKENDTFKVLKGDVNGSEVVSINIRVIKKICVDKVFTATDRCMKTISIDDVVKVFEGP 511

Query: 1336 LEGREGVVRHMYKGTLFIYDENQEENSGIFCAKSDLCENITPPKDSSFRKGGNKSSSSFN 1515
            LEGREG+VRHMYKG LFIYDE Q EN+G FCA S +C+ +   +D    K   ++  SF 
Sbjct: 512  LEGREGIVRHMYKGVLFIYDECQSENNGFFCANSGICDLVKKSRDLGGGKLSTRAGPSFA 571

Query: 1516 QSPVRSCEQEDSSYTFSRNRHSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKL 1695
            QSP+R  EQ+D+S +FSRN+ S S   FS+GQTLRIRKGPLKGYLCRV+R+ R+D+TVKL
Sbjct: 572  QSPIRLSEQDDNSQSFSRNQQSNSLGTFSVGQTLRIRKGPLKGYLCRVIRMRRADITVKL 631

Query: 1696 DSLVKVITVEEQFLSIPNIKRDFAAEMPTDIFGTQE-RFTGGL--SGNG------EQTVV 1848
            DSL K++TV+E+ LS+PN KRD A  M  ++FG+QE + T GL  +G G      E    
Sbjct: 632  DSLGKLLTVDEKLLSLPNSKRDDATAMQCNMFGSQEDQSTDGLLDAGGGLGMDNFEFNAG 691

Query: 1849 TSSWDGASSSWQALSTSTL-FGNNNDQKTEQEQGADPWGSKVSLAAGDREQGADPWGSHA 2025
             SS+     SW   S S+  F   ND K +Q Q ADPWGSK+S   GD+EQG    G   
Sbjct: 692  MSSF--GRDSWNTASCSSFSFPRENDSK-DQNQIADPWGSKLSSWNGDQEQGPANKGEAP 748

Query: 2026 SIVAGDHEGSDPWGSKLVPVATDTEQGADPWGSKASISAGDK------EQGADAWGRNMA 2187
            S+ A                    EQ +  W     + +GDK      +   DAW +   
Sbjct: 749  SVSA--------------------EQSS--WN---KVESGDKGVDAKCKNDVDAWNK--- 780

Query: 2188 GASTEKEERADPW------GGKTVL--GDSSHSDTAFGSWVK-VSSTSGEHNSWNKSE-- 2334
             A T+ E     W       G+T    GD   SD+A  + V+ VS   G    W+K++  
Sbjct: 781  -AFTKVETSTSGWPAPVQKTGQTWCSNGDGDGSDSAAHTAVEGVSDAVG----WSKAKLS 835

Query: 2335 ----GGGFEKDGDGWNKPCVKTTPPTAKADDKQG 2424
                G G     D WNK   K  PP     +  G
Sbjct: 836  TPDSGQGRTIGEDSWNKAASK--PPILSDTETSG 867


>ref|XP_008656431.1| protein RNA-directed DNA methylation 3 isoform X1 [Zea mays]
 gb|AQK94714.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 1592

 Score =  631 bits (1628), Expect = 0.0
 Identities = 364/821 (44%), Positives = 492/821 (59%), Gaps = 42/821 (5%)
 Frame = +1

Query: 112  FSKGGRSEGKEFRSAGKPQYLPFLVKXXXXXXXXXXXXIKDRYGRGSEYAVYDEDPKECD 291
            F+ G  ++    +   +   LPFLVK            IK+RY    +YA      +E D
Sbjct: 86   FTGGEHAQNLSHKRTERSHPLPFLVKEEELSGDELEEFIKNRYSNRVKYAADRSYSREDD 145

Query: 292  DGVSVELSAEDPKIWRVKCMVGREQQMVLSLMHKYADLQRLGTKMEIISAFTLEHVKGYV 471
            D  S++ + ++P IWRVKCMVGRE+QM    M K+ DL+++GTK+ II+AF L+H++G+V
Sbjct: 146  DIFSMDCALKEPTIWRVKCMVGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFV 205

Query: 472  YIEADKACDIVEACKGFFNIYATRMGLVPSNDIPHLLSTRNKPCTISKGTWVRMKNGNYK 651
            ++EA+KACD+ EACKGF ++Y +R+  VP+ ++P LLS+R KP  IS+GTW+RMKNGNYK
Sbjct: 206  FVEAEKACDVTEACKGFCSVYTSRITSVPAAEVPSLLSSRTKPFEISRGTWIRMKNGNYK 265

Query: 652  GDLGQVVDYDEARKRATIKLVPRIDLQAIAKKYGGGVSLKEAAVPAPRLISSQELEHFRS 831
            GDL QVV  D+ RK+  IK+VPR+DL AI+KK+GG VSLK AAVPAPRLISSQELE FR 
Sbjct: 266  GDLAQVVSVDDGRKKVMIKIVPRVDLHAISKKFGGAVSLKGAAVPAPRLISSQELEFFRP 325

Query: 832  HIEIRRDRHSGEYFEILDGLMLKDGFLYKKVSIASIVFWGVQPSKDELLKFTE--MSKAD 1005
            HIEI+RDR +GE FE+LDGLM KDGFLYKKV+++S+++WG+QP++ ELLKF+    ++A 
Sbjct: 326  HIEIKRDRQTGEVFEVLDGLMFKDGFLYKKVALSSLIYWGIQPTETELLKFSSSPSNRAS 385

Query: 1006 EEDVSWLSTVYNVRK--------------KMKSSEAADSKGASELGN-----GFILHDLV 1128
             +D+ WLS +Y  +K              K++SS+A+D K ++   N      F LHDLV
Sbjct: 386  ADDLDWLSGMYGSKKRNLPEKRDMESSSSKIRSSKASDLKASTSTENYDENDEFNLHDLV 445

Query: 1129 LFGRKGFGVXXXXXXXXXXXXXXXXEGQEVMTIKSEDIKGHCVDKMFTASDRHRKTIYIN 1308
            L+GRK FGV                EG  V  ++ +DIK  CVDKMFTA D  +KTI IN
Sbjct: 446  LYGRKDFGVIVAVEKDGFRILKGGPEGSAV-KVRKQDIKKGCVDKMFTAVDHQKKTISIN 504

Query: 1309 DTVKVLKGPLEGREGVVRHMYKGTLFIYDENQEENSGIFCAKSDLCENITPPKDSSFRKG 1488
            DTV V++GP +G++GVV+H+Y G LFIY+E++ EN G FCA+S  CE I     SS  + 
Sbjct: 505  DTVNVVEGPFQGKQGVVKHLYLGILFIYNESESENCGFFCAQSGSCEKIRKGLGSSTTES 564

Query: 1489 GNKSSSSFNQSPVRSCEQEDSSYTFSRNRHSESNQPFSIGQTLRIRKGPLKGYLCRVVRI 1668
             + ++  F   P  + EQ     T  R   S   Q FSIGQ LRIRKGPLKGYLCRVVRI
Sbjct: 565  SDFTTPMF---PEPAYEQNGHRDT-ERPYRSTREQLFSIGQMLRIRKGPLKGYLCRVVRI 620

Query: 1669 YRSDVTVKLDSLVKVITVEEQFLSIPNIKRDFAAEMPTDIFGTQE-RFTGGLSGNGEQTV 1845
            +R+DVTVKLDSL+K++TV+   LS+P  + D  +  P   FG+Q+  F G  +G      
Sbjct: 621  FRNDVTVKLDSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTSFFGSEAGK----- 675

Query: 1846 VTSSWDG-----ASSSWQALSTSTLFGNNN---------DQKTEQEQGADPWGSKV---S 1974
              +SWD       S SWQ  S+STL   N           +KT  +  +DPWG K    S
Sbjct: 676  --TSWDNGLPSFGSDSWQPFSSSTLSVQNAGGESEADPWSKKTSAKDDSDPWGKKTDGDS 733

Query: 1975 LAAGDREQG-ADPWGSHA-SIVAGDHEGSDPWGSKLVPVATDTEQGADPWGSKASISAGD 2148
               G +  G +DPWG  A S   GD   S+PWG + VP A      +DPWG K   SA  
Sbjct: 734  DRWGKKTDGDSDPWGKEAVSAADGD---SNPWGKETVPSAAG---DSDPWGKKVVSSA-- 785

Query: 2149 KEQGADAWGRNMAGASTEKEERADPWGGKTVLGDSSHSDTAFGSWVKVSSTSGEHNSWNK 2328
             +  +D+WG+    ++ + E+     GG           TA+     V  +    +SW++
Sbjct: 786  -DGDSDSWGKKATSSAVDTEKEGS--GG-----------TAWDKQAGVGGSDAAGSSWDR 831

Query: 2329 SEGGGFEKDGDGWNKPC-VKTTPPTAKADDKQGADPWGSKV 2448
            +     EK  D W + C V      A+AD     DPWGSKV
Sbjct: 832  AVVNESEK-SDNWGEACRVMDMGTGAEAD----TDPWGSKV 867


>ref|XP_020587140.1| protein RNA-directed DNA methylation 3 [Phalaenopsis equestris]
          Length = 1960

 Score =  639 bits (1647), Expect = 0.0
 Identities = 370/796 (46%), Positives = 479/796 (60%), Gaps = 37/796 (4%)
 Frame = +1

Query: 148  RSAGKPQYLPFLVKXXXXXXXXXXXXIKDRYGRGSEYAVYDEDPKECDDGVSVELSAEDP 327
            +  GK   LPF +K            I +RY RGSE+  +D+D KEC++ + V  + +D 
Sbjct: 94   KGPGKSSPLPFFIKEEVMNDDELEEAIMERY-RGSEFISFDDDVKECNETLLVSHATKDL 152

Query: 328  KIWRVKCMVGREQQMVLSLMHKYADLQRLGTKMEIISAFTLEHVKGYVYIEADKACDIVE 507
             IWRVKCM+GRE+Q    LM K+ DLQ++G K+ I S F L+HVKG+VY+EADKA ++ E
Sbjct: 153  SIWRVKCMMGRERQTSFCLMQKFVDLQKIGKKLHIFSVFALDHVKGFVYVEADKAGNVFE 212

Query: 508  ACKGFFNIYATRMGLVPSNDIPHLLSTRNKPCTISKGTWVRMKNGNYKGDLGQVVDYDEA 687
            AC G   +Y +R+ LVP N+ P+LLS + K   ISKG WVR+KNG YKGDL +V+  +++
Sbjct: 213  ACNGLCFLYPSRIELVPRNETPNLLSIQKKSSGISKGMWVRLKNGKYKGDLAEVIFVNDS 272

Query: 688  RKRATIKLVPRIDLQAIAKKYGGGVSLKEAAVPAPRLISSQELEHFRSHIEIRRDRHSGE 867
            +KR TIKLVPRIDLQAIAKK+GGG SLK AA+PAPRLIS+ ELE FR HIE+RRDR +GE
Sbjct: 273  KKRVTIKLVPRIDLQAIAKKFGGGTSLKAAAIPAPRLISTHELEDFRPHIEVRRDRETGE 332

Query: 868  YFEILDGLMLKDGFLYKKVSIASIVFWGVQPSKDELLKFTEMSKADEEDVSWLSTVYNVR 1047
             FE+LDGLMLKDG+LYKKVSI S++ WGVQPS DEL KF +M     +DV WLS++Y  +
Sbjct: 333  IFEVLDGLMLKDGYLYKKVSICSLIHWGVQPSSDELTKFEDMGNDGVKDVGWLSSIYKTQ 392

Query: 1048 KK------------------------MKSSEAADSKGASELGNGFILHDLVLFGRKGFGV 1155
             K                         K+ E ++ K   +  NGF + D VLFG+K  G+
Sbjct: 393  IKNKLPETSHQKNGEKSKQKNGEKSNRKNGEKSNQKDEDKQRNGFEIDDFVLFGKKDCGI 452

Query: 1156 XXXXXXXXXXXXXXXXEGQEVMTIKSEDIKGHCVDKMFTASDRHRKTIYINDTVKVLKGP 1335
                               EV++I    IK +CVDK+FTA+DR  KTI+I+D VKV +GP
Sbjct: 453  IIDKENDVFKVLKGDANSSEVVSINIGVIKKNCVDKVFTATDRGMKTIFIDDVVKVSEGP 512

Query: 1336 LEGREGVVRHMYKGTLFIYDENQEENSGIFCAKSDLCENITPPKDSSFRKGGNKSSSSFN 1515
            LEGREG+V+HMYKG  FIYDE Q EN+G FCAKS++C+ +   +D    K  + +  SF 
Sbjct: 513  LEGREGIVKHMYKGVFFIYDECQSENNGFFCAKSEICDLVKKSRDFGGGKLSSNAGPSFA 572

Query: 1516 QSPVRSCEQEDSSYTFSRNRHSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKL 1695
            QSP+RS EQ+D+S +FSRN  S S   FS+GQTLRI KGPLKGYLCRV+RIYR+DVTVKL
Sbjct: 573  QSPIRSSEQDDNSQSFSRNHQSNSRGTFSVGQTLRICKGPLKGYLCRVIRIYRADVTVKL 632

Query: 1696 DSLVKVITVEEQFLSIPNIKRDFAAEMPTDIFGTQ-ERFTGGLSGNGEQTVVTSSWDGAS 1872
            DSL K++TV+E+ LS PN KRD A  M  D+FG+Q E+  GGL  +G    + +S  G  
Sbjct: 633  DSLGKLLTVDEKLLSFPNSKRDDATTMQCDMFGSQEEQPIGGLLDSGGGFGMDNSSFG-R 691

Query: 1873 SSWQALSTSTL-FGNNNDQKTEQEQGADPWGSKVSLAAGDREQG-ADPWGSHASIVAGDH 2046
             SW   S S   F  +ND K +Q   AD WGSK +   GD++ G A+ W    S  A   
Sbjct: 692  ESWNTPSCSGFSFSRDNDCK-DQSAVADQWGSKPTFQDGDQDHGAANSWSKAPSSSAEQR 750

Query: 2047 EGSDPWGSKLVPVATDTEQGADPWGSKASISAGDKEQGADAWGRNMAGASTEKEERADPW 2226
                 W +K+V      E+GAD           D E  ADAW +    AS + E     W
Sbjct: 751  S----W-NKMV----SGEKGAD----------ADCENDADAWNK----ASNKGETSTGGW 787

Query: 2227 GGKTVL---GDSSHSDTAFGSWVKVSSTSGEHNS----WNKSEGGGFEK---DGDGWNKP 2376
             G T +   G +  +  A G       T+GE  S    W+K+     E      DGWN+ 
Sbjct: 788  QGDTSVQKTGQTWSTKGASGGLDGAVHTAGEGVSAAGGWSKAAPDSREALTFGEDGWNRA 847

Query: 2377 CVKTTPPTAKADDKQG 2424
              K  P TA   D  G
Sbjct: 848  ASK--PQTASNTDASG 861


>ref|XP_009409884.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X2 [Musa
            acuminata subsp. malaccensis]
          Length = 1808

 Score =  635 bits (1638), Expect = 0.0
 Identities = 364/806 (45%), Positives = 485/806 (60%), Gaps = 31/806 (3%)
 Frame = +1

Query: 112  FSKGGRSEGKEFRSAGKPQYLPFLVKXXXXXXXXXXXXIKDRYGRGSEYAVYDEDPKECD 291
            F+  G+ E K+    G+  +LPF VK            I DRY  GSE+  Y++D  ECD
Sbjct: 76   FADDGKYENKKITGDGQSHHLPFFVKEELSGDELEEL-INDRYAHGSEHVTYNDDSAECD 134

Query: 292  DGVSVELSAEDPKIWRVKCMVGREQQMVLSLMHKYADLQRLGTKMEIISAFTLEHVKGYV 471
               S     +D  IW+VKCMVGRE+QM    M KY +L+ LGTK++I S F LEHVKGYV
Sbjct: 135  VKASEADGMKDVIIWKVKCMVGRERQMTFCFMQKYVELENLGTKLQISSVFALEHVKGYV 194

Query: 472  YIEADKACDIVEACKGFFNIYATRMGLVPSNDIPHLLSTRNKPCTISKGTWVRMKNGNYK 651
            ++EADK  D++EACKGF ++Y++R+ +VP +++PHLL+ RNK   +  G  VR+K+G YK
Sbjct: 195  FVEADKLYDVIEACKGFCSVYSSRINIVPRSEVPHLLAIRNKLPEVCTGKLVRLKSGKYK 254

Query: 652  GDLGQVVDYDEARKRATIKLVPRIDLQAIAKKYGGGVSLKEAAVPAPRLISSQELEHFRS 831
            GDL QVV  D+ +K+ TIKLVPRIDLQAIAKK+GGG+SLK AAVPAPRLISS ELE FR 
Sbjct: 255  GDLAQVVAVDDGQKQLTIKLVPRIDLQAIAKKFGGGISLKLAAVPAPRLISSHELESFRP 314

Query: 832  HIEIRRDRHSGEYFEILDGLMLKDGFLYKKVSIASIVFWGVQPSKDELLKFTEMSKADEE 1011
            HIE++RDR +GE FE+LDG+MLKDG+L+KKVS  S++F GVQPS  ELL F++++    E
Sbjct: 315  HIEVKRDRLTGELFEVLDGMMLKDGYLFKKVSTGSVIFSGVQPSSSELLMFSDVTNNMVE 374

Query: 1012 DVSWLSTVYNVRKKMKSSEAADSKGASELGNGFILHDLVLFGRKGFGVXXXXXXXXXXXX 1191
            D++W+S++YN RKK   +E  D + +    N + LHDLVLFG+K +GV            
Sbjct: 375  DLNWVSSIYNARKKKPGAEILDDEVSVVTKNDYGLHDLVLFGQKHYGVIIAVEKDCFKIL 434

Query: 1192 XXXXEGQEVMTIKSEDIKGHCVDKMFTASDRHRKTIYINDTVKVLKGPLEGREGVVRHMY 1371
                EG+ V+T+K +DIK  CVDKMFTA D  + TI+IND VK+L GPL+GREGVV+HMY
Sbjct: 435  KGDIEGENVVTVKIQDIKNSCVDKMFTALDWKKTTIFINDIVKILAGPLQGREGVVKHMY 494

Query: 1372 KGTLFIYDENQEENSGIFCAKSDLCENITPPKDSSFRKG--GNKSSSSFNQSPVRSCEQE 1545
            KGTLFI+ E + +NSG F  KS  CE +   K+S   K   G ++++SF+QSP+R+ ++E
Sbjct: 495  KGTLFIHAEYETKNSGFFSVKSVSCEKVKESKNSYGVKAGKGKEANTSFSQSPIRTFDRE 554

Query: 1546 DSSYTFSRNRHSESNQPFSIGQTLRIRKGPLKGYLCRVVRIYRSDVTVKLDSLVKVITVE 1725
            ++++  +R   S++ Q FSIGQTLRIR+GPLKGYLCRVV IYRSDVTVKLDSLVK+ITV+
Sbjct: 555  NNAHGSTRRGQSDNEQMFSIGQTLRIREGPLKGYLCRVVGIYRSDVTVKLDSLVKLITVK 614

Query: 1726 EQFLSIPNIKRDFA------AEMPTDIFGTQERFTGGLSGNGEQTVVTSSWDG-----AS 1872
            ++ L++P IK D A      A + +D FG          G        SSWD        
Sbjct: 615  DKSLAVPKIKGDNATGSSDQATISSDHFGLSTACPS--FGETSTPAEKSSWDSVMPSFGR 672

Query: 1873 SSWQALSTS-TLFGNNNDQKTEQEQGADPWGSKVSLAAGDREQG-----ADPWGSHASIV 2034
             SWQ  S+S +    NN+ +T+    ADPW S ++ A G +  G      D WG      
Sbjct: 673  DSWQPFSSSNSSVACNNENQTDHGNEADPW-SNMATATGKQTSGGSIEITDGWGLGL--- 728

Query: 2035 AGDHEGSDPWGSKLVPVATD--TEQGA-DPWGS--------KASISAGDKEQGADAWGRN 2181
                 G+DPW        TD  T  GA   WG+        KAS  AGD+   ++    +
Sbjct: 729  -----GADPWNKVTYANRTDAPTSDGAIGGWGNSSNSGLLEKASSGAGDQAGSSEIKSYD 783

Query: 2182 MAG-ASTEKEERADPWGGKTVLGDSSHSDTAFGSWVKVSSTSGEHNSWNKSEGGGFEKDG 2358
             +  A+       D W         +  D A G W   S       SW+    G   K  
Sbjct: 784  WSNKAAVVLRNDVDGWE-----KSKTSVDDAGGIWDNESVKKSNACSWDSEGIGKMSKKE 838

Query: 2359 DGWNKPCVKTTPPTAKADDKQGADPW 2436
            D W+K        TAK+ +K   D W
Sbjct: 839  DAWDK--------TAKSQEKSN-DNW 855