BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00009208
         (4943 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020262150.1| DNA-directed RNA polymerase IV subunit 1 [As...  2018   0.0  
ref|XP_017700627.1| PREDICTED: DNA-directed RNA polymerase IV su...  1642   0.0  
ref|XP_017700629.1| PREDICTED: DNA-directed RNA polymerase IV su...  1636   0.0  
ref|XP_019705595.1| PREDICTED: DNA-directed RNA polymerase IV su...  1598   0.0  
gb|ONK73338.1| uncharacterized protein A4U43_C04F29910 [Asparagu...  1566   0.0  
ref|XP_009411449.1| PREDICTED: DNA-directed RNA polymerase IV su...  1459   0.0  
ref|XP_009411452.1| PREDICTED: DNA-directed RNA polymerase IV su...  1444   0.0  
ref|XP_020084500.1| DNA-directed RNA polymerase IV subunit 1 iso...  1428   0.0  
gb|OAY84267.1| DNA-directed RNA polymerase IV subunit 1 [Ananas ...  1351   0.0  
ref|XP_020681065.1| DNA-directed RNA polymerase IV subunit 1 iso...  1331   0.0  
ref|XP_020572386.1| DNA-directed RNA polymerase IV subunit 1 iso...  1320   0.0  
ref|XP_021318618.1| DNA-directed RNA polymerase IV subunit 1 iso...  1263   0.0  
gb|OQU82183.1| hypothetical protein SORBI_3006G185200 [Sorghum b...  1263   0.0  
ref|XP_021318619.1| DNA-directed RNA polymerase IV subunit 1 iso...  1263   0.0  
ref|NP_001182824.1| DNA dependent RNA polymerase D largest subun...  1261   0.0  
ref|XP_004970757.1| DNA-directed RNA polymerase IV subunit 1 iso...  1261   0.0  
gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest sub...  1257   0.0  
ref|XP_022682776.1| DNA-directed RNA polymerase IV subunit 1 iso...  1256   0.0  
ref|XP_015692233.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1249   0.0  
ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase IV su...  1249   0.0  

>ref|XP_020262150.1| DNA-directed RNA polymerase IV subunit 1 [Asparagus officinalis]
          Length = 1529

 Score = 2018 bits (5229), Expect = 0.0
 Identities = 1032/1552 (66%), Positives = 1217/1552 (78%), Gaps = 20/1552 (1%)
 Frame = -1

Query: 4718 MADDSITDKMVPSAQLLGLKFDLLTGDDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 4539
            M  D  +++MVPSAQLLG+KFDL+TG DIEKFS VN+ND+SDL S KLG+PNA S+CTTC
Sbjct: 1    MEKDLNSERMVPSAQLLGIKFDLMTGPDIEKFSQVNVNDSSDLNSVKLGLPNASSECTTC 60

Query: 4538 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISS 4359
            GST+  DCEGHFGVIKLP  IYHPYL+ E+VHILNQICP CKS            K I +
Sbjct: 61   GSTNTKDCEGHFGVIKLPATIYHPYLVNEVVHILNQICPGCKSIKKQTRKDMQIKKKIET 120

Query: 4358 IRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEE 4179
            ++RLLLKMKFEK+ MPQ+QNLLS+VA   VKHLKFSGS KKW +V+NQA CK+CS+NS+ 
Sbjct: 121  LQRLLLKMKFEKLKMPQNQNLLSKVAK--VKHLKFSGSNKKWASVENQASCKYCSKNSQN 178

Query: 4178 --WYPAIKFKTL------------SRDTNGKKCVAITAEFN--VPKKFENMSLSEVLPKD 4047
              WYPAIKF+TL              D+ GKKCVAI AE N  VP++F N SLSEVLPKD
Sbjct: 179  KYWYPAIKFETLLTDSKGKIVSKGKTDSKGKKCVAIVAEINERVPRQFRNKSLSEVLPKD 238

Query: 4046 FWNFVPMLPSQHENSVSMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVS 3867
            FW+F+PM+  QH  S SMD N+I LSP Q FYLL+E+ KEFIE+FV RRELIFLS +PV+
Sbjct: 239  FWDFMPMVSYQHNKSESMDVNKIILSPAQVFYLLKEISKEFIEKFVSRRELIFLSYVPVA 298

Query: 3866 PNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVH 3687
            PNCQ VVET            DK TK YR VVDAS+ I+E+H+HQQFGF AA+ IASRVH
Sbjct: 299  PNCQHVVETXXXXXXNV----DKCTKVYRSVVDASRNINEYHQHQQFGFRAAAYIASRVH 354

Query: 3686 DCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKI 3507
            DCLN+SKLH+N  S  + + Y S +ND+PS TGLKW+KEVVLSKRSDNTFR+IMIGDPK+
Sbjct: 355  DCLNISKLHNNSTSAEEQAAY-SVKNDKPSCTGLKWVKEVVLSKRSDNTFRVIMIGDPKM 413

Query: 3506 QLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKLIFIHSSDQL 3327
            + GEIGLPRD+   LYI+EHVN HNV+KLK  C LH+ SK EL ARRK KLI IH+S QL
Sbjct: 414  KTGEIGLPRDICENLYIAEHVNNHNVKKLKEVCELHVRSKRELHARRKDKLILIHNSKQL 473

Query: 3326 QVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGD 3147
            QVGDT N+ LEDGDIIMVNRNPSVHPHSLLALSVKILPV+  VSINPLCCAPLLGDFDGD
Sbjct: 474  QVGDTFNKPLEDGDIIMVNRNPSVHPHSLLALSVKILPVKDVVSINPLCCAPLLGDFDGD 533

Query: 3146 CLHGFVPQSVRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFE 2967
            CLHGFVPQS+ ARV           LFN Q G+SLLSLTHDSLTAAHLLME E+F +K E
Sbjct: 534  CLHGFVPQSIGARVELKELLSLDSQLFNYQGGQSLLSLTHDSLTAAHLLMEDEIFLNKRE 593

Query: 2966 MQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVP 2787
            MQQL ML P   +FP +IKAP ++MP+WTG QLFSM+LP++M+F+  SS  E+  GDLVP
Sbjct: 594  MQQLNMLCPWNLEFPTVIKAPTIEMPQWTGWQLFSMLLPIDMDFAPASSSFEIRKGDLVP 653

Query: 2786 SPGV----SFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYL 2619
              GV    S SS+  IS +FSRMFECYG KA+ YLF FQE+LCEYLTMRGLSVSLHD+YL
Sbjct: 654  PSGVSSSSSSSSQKIISEIFSRMFECYGGKAHEYLFHFQEILCEYLTMRGLSVSLHDIYL 713

Query: 2618 TSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFAR 2439
             S+ YTR KLI+EVS ALEEAK S  F+ELMLEP +G ++K HDE++DLSHT+++SN  R
Sbjct: 714  ASNAYTRTKLINEVSCALEEAKGSFRFSELMLEPMVGFLLKEHDESDDLSHTIDVSNITR 773

Query: 2438 ERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXL 2259
              RP+S+ASIAKFKD+FRDLQ+VV +Y+S++NSLFTMM AGSKGSL K           L
Sbjct: 774  -TRPMSEASIAKFKDIFRDLQNVVHHYVSADNSLFTMMRAGSKGSLLKLVQQGLCLGLQL 832

Query: 2258 SAKPLPFSIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECF 2079
            S K LPF+IPL+LSC  WN+HKAF+RS+  +D S+ S GENSYAVIEASFLDGL+PLECF
Sbjct: 833  STKTLPFTIPLELSCFAWNEHKAFNRSVSEKDESDFSRGENSYAVIEASFLDGLNPLECF 892

Query: 2078 VHALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKS 1899
             HAL+CR+NMFSENA++PGTLTRKIMF+MRDI VAYDGTVRN+YGQQ+VQFS+ SP +KS
Sbjct: 893  FHALACRANMFSENAQVPGTLTRKIMFHMRDIYVAYDGTVRNSYGQQVVQFSHQSPYEKS 952

Query: 1898 CEDCDHSHFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVL 1719
                 +S FSI EDS   +L G PVGSLAACSISEAAYGALD PVNSLESSPLLNLKKVL
Sbjct: 953  ----RNSQFSI-EDS---QLSGQPVGSLAACSISEAAYGALDTPVNSLESSPLLNLKKVL 1004

Query: 1718 ECAPTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDA 1539
            EC P +TS  RTASL LSNKL++LNYGFEYGALAV++HLD+VFFSD+VTSVMIFY+A D 
Sbjct: 1005 ECVPGKTSTERTASLVLSNKLRKLNYGFEYGALAVRDHLDKVFFSDVVTSVMIFYAARDI 1064

Query: 1538 KGTKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFREGRKLPRLFMTSQSCV 1359
            K TKG +LSPWV HFH+NKE + +K I+ QSIVDAL+GNY+ FREG+ LPRLFMT Q+C+
Sbjct: 1065 KETKGPKLSPWVSHFHINKERMAKKGIHAQSIVDALSGNYHLFREGKMLPRLFMTCQNCL 1124

Query: 1358 LGNEQKNLEELCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVD 1179
            L N  KN EE CI V A        +D  SPT+LD IRD+V+PVLLQTLIKGF EFKQVD
Sbjct: 1125 LDN-AKNFEESCILVTA--------EDYNSPTILDIIRDTVIPVLLQTLIKGFTEFKQVD 1175

Query: 1178 ILWDSQPKPDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRLDGAHDISDVF 999
            ILWDS  KPDG+L +K+ M +SC  R FW  LQ+AC+PIMD+IDW RS  DG +DIS+ F
Sbjct: 1176 ILWDSHSKPDGELIVKVTMAKSCALRNFWHALQNACIPIMDLIDWGRSHPDGVYDISNAF 1235

Query: 998  GIISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSIS 819
            GI+S+Y+YFL SLKS +SDIGRNIHLEHLLLVSDSLSVTGEFHGL+AK +KQQ+AHLSIS
Sbjct: 1236 GIVSAYNYFLRSLKSTISDIGRNIHLEHLLLVSDSLSVTGEFHGLTAKALKQQKAHLSIS 1295

Query: 818  SPFTQACFSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPK 639
            +PFT+ACFSNPEK FI+AAK    D+L GTVDAVAWGQEAPVGTGG FK++YSGK H PK
Sbjct: 1296 APFTEACFSNPEKSFIDAAKQGLADNLQGTVDAVAWGQEAPVGTGGSFKLMYSGKAHIPK 1355

Query: 638  QTENIYEILLKQKHDSSSQIPGADKWKAQPGVDNAGGSMRRWNEHNCTTKKEKNVVCSSQ 459
             ++N+YE LL  K D   Q P ADKW  +  V N  GSM+ W+  N T++K+  V  SS+
Sbjct: 1356 PSDNVYETLLSLKSDKPWQTPNADKW-WRGAVSNISGSMKTWDGFNFTSEKKTMVRSSSK 1414

Query: 458  PASVRIGSWDNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXX 279
              S+ IGSW +I AM S+L R+LHQY ++H LNE DKSL++EALMYHPKKDA        
Sbjct: 1415 SDSMPIGSWSSIEAMRSALRRILHQYSIDHHLNEVDKSLVIEALMYHPKKDAKIGCGIKE 1474

Query: 278  XXXGHSPFHPKSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEKEL 123
               G  P+HP++RCFILIR+DGTTEDFSY KCV EAA Q+S EF L  + +L
Sbjct: 1475 IKVGCGPYHPETRCFILIRSDGTTEDFSYHKCVNEAARQLSIEFKLTKKSDL 1526


>ref|XP_017700627.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Phoenix dactylifera]
 ref|XP_017700628.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Phoenix dactylifera]
          Length = 1567

 Score = 1642 bits (4253), Expect = 0.0
 Identities = 862/1600 (53%), Positives = 1099/1600 (68%), Gaps = 64/1600 (4%)
 Frame = -1

Query: 4718 MADDSITDKMVPSAQLLGLKFDLLTGDDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 4539
            MA D I + M PS  L G++FD+LT DDIEK  HVNI +++D+ ++KLG+PNA S+C TC
Sbjct: 1    MASDQIIELMAPSGLLTGIEFDILTDDDIEKICHVNIVESNDVTNAKLGLPNASSRCQTC 60

Query: 4538 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXK---- 4371
            GS +  DCEGH G+IKLP  IYHPY + E++ ILNQICP C S                 
Sbjct: 61   GSKNTRDCEGHVGLIKLPRTIYHPYFVTEVIQILNQICPGCMSIKGDLQMKDSFDLETWE 120

Query: 4370 --------------TISSIRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGSEKKW 4233
                          TI+++RR  LK+   K+     Q++L      ++K     G  KKW
Sbjct: 121  KSIGEDHISEAFGKTIAALRRKFLKLCKSKVLF-SPQSVLDHARKFYLKKSLEVG--KKW 177

Query: 4232 GTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEV 4059
               D QA CK+C+RN+ +WYPA+KFK LS+D  GKK +++ AE N  +PKKF+N SL +V
Sbjct: 178  AKTDAQATCKYCARNATDWYPAVKFKLLSKDMLGKKSLSVIAEVNDKLPKKFQNKSLGDV 237

Query: 4058 LPKDFWNFVPMLPSQHENSVSMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSC 3879
            LP+DFW+FVP    Q E++     NRIT+SP QAF LL+ELD EFI+QF  RR+++FLS 
Sbjct: 238  LPQDFWSFVPTFSQQQESNA----NRITVSPYQAFCLLKELDPEFIKQFALRRDVLFLSY 293

Query: 3878 IPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIA 3699
            +PVSPNC RVVET H ++DGP+LS D+STKAY+ +VD S+KIDEF +HQQF  +A S I 
Sbjct: 294  LPVSPNCHRVVETSHVHADGPQLSFDQSTKAYKRLVDISRKIDEFRQHQQFVPLATSFIT 353

Query: 3698 SRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIG 3519
            SRV DCLNVSKL +  +S GD S            +GLKW+KEVVLSKRSDN FRM M+G
Sbjct: 354  SRVLDCLNVSKLRARNSSNGDSS----------CLSGLKWLKEVVLSKRSDNVFRMTMVG 403

Query: 3518 DPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKLIFIHS 3339
            DPKI+LG+IG+P D+S+ +YISEHVN +N+EKL  SC LHL++K EL +R KG+L  +  
Sbjct: 404  DPKIKLGQIGIPFDISQNMYISEHVNTYNLEKLNMSCNLHLLTKEELHSRSKGQLTSVRK 463

Query: 3338 SDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGD 3159
            S+QLQVGDT+ R LE+ D+I+VNR PSVH HSL+ALSVKILP++S VSINPLCCAPLLGD
Sbjct: 464  SNQLQVGDTIYRPLENDDLILVNRPPSVHQHSLIALSVKILPIQSVVSINPLCCAPLLGD 523

Query: 3158 FDGDCLHGFVPQSVRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFF 2979
            FDGDCLHG+VPQSV  RV           L N QDGRSL+SL+HDSLTAAHLL    VF 
Sbjct: 524  FDGDCLHGYVPQSVHCRVELGELVSLDHQLLNAQDGRSLVSLSHDSLTAAHLLTNSIVFL 583

Query: 2978 SKFEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNG 2799
            +KFEMQQ EML P +S  P+IIKAP  + P WTG+QLFSM+LP  M+FS  S+ + +  G
Sbjct: 584  NKFEMQQFEMLCPSQSPSPSIIKAPTTRSPLWTGQQLFSMLLPPTMDFSMGSNKIPISKG 643

Query: 2798 DLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYL 2619
            +++ + G SF  +N  S +FS MF+CYG KA ++LFS QEVLCEYLT RGLSVSL D+YL
Sbjct: 644  EVLSTSGASFWLQNTTSSIFSSMFKCYGRKALDFLFSAQEVLCEYLTTRGLSVSLGDVYL 703

Query: 2618 TSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFAR 2439
            +SD Y+R K+ DEV + LEEA+ +CH  +LML+PE+  ++K+HD T       N  N+AR
Sbjct: 704  SSDLYSRRKMTDEVCYGLEEAEDACHIKQLMLDPEMEFLLKSHDGT-----CRNPYNYAR 758

Query: 2438 ERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXL 2259
             ++ ISQ SIA F+D+F DLQ+V+  YIS +NS+  M++AGSKGSL+K           L
Sbjct: 759  NQKHISQFSIAAFRDVFYDLQNVIHQYISRDNSMLAMIHAGSKGSLSKLVQQGACLGLQL 818

Query: 2258 SAKPLPFSIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECF 2079
             A PLPF IP +LSC   N  K  +  +  QD      G+NSYAV++ASFLDGL+PLECF
Sbjct: 819  PASPLPFRIPRRLSCVSLNAQKKLEYGI-PQDVVECVRGQNSYAVVKASFLDGLNPLECF 877

Query: 2078 VHALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKS 1899
            VHA++ RSNMFSENAELPG LTRK+MFYMRD+  AYDGTVR+ YGQQLVQFSY  P + S
Sbjct: 878  VHAITGRSNMFSENAELPGMLTRKLMFYMRDLYAAYDGTVRSTYGQQLVQFSYNIPGESS 937

Query: 1898 CEDCDHSHFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVL 1719
             E  D    +  +D+  +RLGG PVGS A+C+ISEAAYGALDHP+NSLE+SPLLNLKKVL
Sbjct: 938  SEQGDSCTMNGEKDAENNRLGGQPVGSWASCAISEAAYGALDHPMNSLEASPLLNLKKVL 997

Query: 1718 ECAPTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDA 1539
            EC  +R SV+++AS+ LS  LK+  YGFEYGAL VKNHLDRV FSD+VT+V+IFY+  D 
Sbjct: 998  ECGKSRASVDKSASIFLSKGLKKQRYGFEYGALEVKNHLDRVLFSDLVTTVLIFYAGLDV 1057

Query: 1538 KGTKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQS 1365
            +GTK    SPW+ HFHV+KE ++RKR+ VQ+I+D L+ NYN  RE  G +LP L +TS+ 
Sbjct: 1058 QGTK---FSPWITHFHVSKERMMRKRLRVQTIIDQLSANYNFVRETVGTELPGLRITSKD 1114

Query: 1364 CVLGNEQKNLEELCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQ 1185
            C L + Q   +E    +  V++ E + Q       LDTIRD ++P+LL+TL+KGF EFK+
Sbjct: 1115 CSLIDIQNEHDETFCIMVLVDTPESEIQ-------LDTIRDVLVPLLLETLVKGFWEFKK 1167

Query: 1184 VDILWDSQPKPDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRLDGAHDISD 1005
            V+IL D QP    +LFL++ M E C P KFW  LQ+AC+PIMD+IDWE S  +  +DI  
Sbjct: 1168 VEILCDIQPDSLDELFLRVSMSEKCLPGKFWSALQNACIPIMDLIDWEHSHPNSMYDIFS 1227

Query: 1004 VFGIISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLS 825
            ++GI +++ YFL  LKSA SD GR IH EHLL+ +D LSVTGEFHGLS KG+K+QR   S
Sbjct: 1228 IYGIDAAWKYFLRHLKSATSDTGRCIHEEHLLMAADCLSVTGEFHGLSIKGLKKQRDQAS 1287

Query: 824  ISSPFTQACFSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHS 645
            ISSPFT AC SNP   FI AAK  S DHL GT+DA+AWG+EAPVGTGGPF+IIYSGKVH+
Sbjct: 1288 ISSPFTLACLSNPGYGFINAAKQGSVDHLGGTLDAMAWGKEAPVGTGGPFEIIYSGKVHN 1347

Query: 644  PKQTENIYEILLKQKHDSSSQIPG----------ADKWKAQPGVDNAGGS---------- 525
            P++TENIY+ LL  K +   Q             + KWK +  + N G S          
Sbjct: 1348 PQKTENIYKTLLNFKVEKPWQDDNKLCRHGDRNVSTKWKHKRILSNTGASTGESIDQLIS 1407

Query: 524  --------------MRRWNEH--------NCTTKKEKNVVCSSQPASVRIGSWDNISAMS 411
                          + +W           + ++  +  +  S++ A    GSW NI  M 
Sbjct: 1408 EEAHTRQGCPCEYPVNKWERQSKGHVVSSSVSSNSDAKMGFSTKSALRSAGSWANIVDMC 1467

Query: 410  SSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFHPKSRCFI 231
            S+L  +LH+YP+N  LNE DKS LMEAL YHPK+DA           GHSP HP SRCF+
Sbjct: 1468 SNLRTILHEYPINGYLNETDKSCLMEALSYHPKRDAKMGTGIQGIKIGHSPLHPGSRCFV 1527

Query: 230  LIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEKELDSRQ 111
            L+RNDGTTEDFSYRKC+I AA  ISPEFG +VEK++  R+
Sbjct: 1528 LVRNDGTTEDFSYRKCIIGAAYSISPEFGSMVEKKMSWRR 1567


>ref|XP_017700629.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
            [Phoenix dactylifera]
          Length = 1566

 Score = 1636 bits (4236), Expect = 0.0
 Identities = 861/1600 (53%), Positives = 1098/1600 (68%), Gaps = 64/1600 (4%)
 Frame = -1

Query: 4718 MADDSITDKMVPSAQLLGLKFDLLTGDDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 4539
            MA D I + M PS  L G++FD+LT DDIEK  HVNI +++D+ ++KLG+PNA S+C TC
Sbjct: 1    MASDQIIELMAPSGLLTGIEFDILTDDDIEKICHVNIVESNDVTNAKLGLPNASSRCQTC 60

Query: 4538 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXK---- 4371
            GS +  DCEGH G+IKLP  IYHPY + E++ ILNQICP C S                 
Sbjct: 61   GSKNTRDCEGHVGLIKLPRTIYHPYFVTEVIQILNQICPGCMSIKGDLQMKDSFDLETWE 120

Query: 4370 --------------TISSIRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGSEKKW 4233
                          TI+++RR  LK+   K+     Q++L      ++K     G  KKW
Sbjct: 121  KSIGEDHISEAFGKTIAALRRKFLKLCKSKVLF-SPQSVLDHARKFYLKKSLEVG--KKW 177

Query: 4232 GTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEV 4059
               D QA CK+C+RN+ +WYPA+KFK LS+D  GKK +++ AE N  +PKKF+N SL +V
Sbjct: 178  AKTDAQATCKYCARNATDWYPAVKFKLLSKDMLGKKSLSVIAEVNDKLPKKFQNKSLGDV 237

Query: 4058 LPKDFWNFVPMLPSQHENSVSMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSC 3879
            LP+DFW+FVP    Q E++     NRIT+SP QAF LL+ELD EFI+QF  RR+++FLS 
Sbjct: 238  LPQDFWSFVPTFSQQQESNA----NRITVSPYQAFCLLKELDPEFIKQFALRRDVLFLSY 293

Query: 3878 IPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIA 3699
            +PVSPNC RVVET H ++DGP+LS D+STKAY+ +VD S+KIDEF +HQQF  +A S I 
Sbjct: 294  LPVSPNCHRVVETSHVHADGPQLSFDQSTKAYKRLVDISRKIDEFRQHQQFVPLATSFIT 353

Query: 3698 SRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIG 3519
            SRV DCLNVSKL +  +S GD S            +GLKW+KEVVLSKRSDN FRM M+G
Sbjct: 354  SRVLDCLNVSKLRARNSSNGDSS----------CLSGLKWLKEVVLSKRSDNVFRMTMVG 403

Query: 3518 DPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKLIFIHS 3339
            DPKI+LG+IG+P D+S+ +YISEHVN +N+EKL  SC LHL++K EL +R KG+L  +  
Sbjct: 404  DPKIKLGQIGIPFDISQNMYISEHVNTYNLEKLNMSCNLHLLTKEELHSRSKGQLTSVRK 463

Query: 3338 SDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGD 3159
            S+QLQVGDT+ R LE+ D+I+VNR PSVH HSL+ALSVKILP++S VSINPLCCAPLLGD
Sbjct: 464  SNQLQVGDTIYRPLENDDLILVNRPPSVHQHSLIALSVKILPIQSVVSINPLCCAPLLGD 523

Query: 3158 FDGDCLHGFVPQSVRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFF 2979
            FDGDCLHG+VPQSV  RV           L N QDGRSL+SL+HDSLTAAHLL    VF 
Sbjct: 524  FDGDCLHGYVPQSVHCRVELGELVSLDHQLLNAQDGRSLVSLSHDSLTAAHLLTNSIVFL 583

Query: 2978 SKFEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNG 2799
            +KFEMQQ EML P +S  P+IIKAP  + P WTG+QLFSM+LP  M+FS  S+ + +  G
Sbjct: 584  NKFEMQQFEMLCPSQSPSPSIIKAPTTRSPLWTGQQLFSMLLPPTMDFSMGSNKIPISKG 643

Query: 2798 DLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYL 2619
            +++ + G SF  +N  S +FS MF+CYG KA ++LFS QEVLCEYLT RGLSVSL D+YL
Sbjct: 644  EVLSTSGASFWLQNTTSSIFSSMFKCYGRKALDFLFSAQEVLCEYLTTRGLSVSLGDVYL 703

Query: 2618 TSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFAR 2439
            +SD Y+R K+ DEV + LEEA+ +CH  +LML+PE+  ++K+HD T       N  N+AR
Sbjct: 704  SSDLYSRRKMTDEVCYGLEEAEDACHIKQLMLDPEMEFLLKSHDGT-----CRNPYNYAR 758

Query: 2438 ERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXL 2259
             ++ ISQ SIA F+D+F DLQ+V+  YIS +NS+  M++AGSKGSL+K           L
Sbjct: 759  NQKHISQFSIAAFRDVFYDLQNVIHQYISRDNSMLAMIHAGSKGSLSKLVQQGACLGLQL 818

Query: 2258 SAKPLPFSIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECF 2079
             A PLPF IP +LSC   N  K  +  +  QD      G+NSYAV++ASFLDGL+PLECF
Sbjct: 819  PASPLPFRIPRRLSCVSLNAQKKLEYGI-PQDVVECVRGQNSYAVVKASFLDGLNPLECF 877

Query: 2078 VHALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKS 1899
            VHA++ RSNMFSENAELPG LTRK+MFYMRD+  AYDGTVR+ YGQQLVQFSY  P + S
Sbjct: 878  VHAITGRSNMFSENAELPGMLTRKLMFYMRDLYAAYDGTVRSTYGQQLVQFSYNIPGESS 937

Query: 1898 CEDCDHSHFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVL 1719
             E  D    +  +D+  +RLGG PVGS A+C+ISEAAYGALDHP+NSLE+SPLLNL KVL
Sbjct: 938  SEQGDSCTMNGEKDAENNRLGGQPVGSWASCAISEAAYGALDHPMNSLEASPLLNL-KVL 996

Query: 1718 ECAPTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDA 1539
            EC  +R SV+++AS+ LS  LK+  YGFEYGAL VKNHLDRV FSD+VT+V+IFY+  D 
Sbjct: 997  ECGKSRASVDKSASIFLSKGLKKQRYGFEYGALEVKNHLDRVLFSDLVTTVLIFYAGLDV 1056

Query: 1538 KGTKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQS 1365
            +GTK    SPW+ HFHV+KE ++RKR+ VQ+I+D L+ NYN  RE  G +LP L +TS+ 
Sbjct: 1057 QGTK---FSPWITHFHVSKERMMRKRLRVQTIIDQLSANYNFVRETVGTELPGLRITSKD 1113

Query: 1364 CVLGNEQKNLEELCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQ 1185
            C L + Q   +E    +  V++ E + Q       LDTIRD ++P+LL+TL+KGF EFK+
Sbjct: 1114 CSLIDIQNEHDETFCIMVLVDTPESEIQ-------LDTIRDVLVPLLLETLVKGFWEFKK 1166

Query: 1184 VDILWDSQPKPDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRLDGAHDISD 1005
            V+IL D QP    +LFL++ M E C P KFW  LQ+AC+PIMD+IDWE S  +  +DI  
Sbjct: 1167 VEILCDIQPDSLDELFLRVSMSEKCLPGKFWSALQNACIPIMDLIDWEHSHPNSMYDIFS 1226

Query: 1004 VFGIISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLS 825
            ++GI +++ YFL  LKSA SD GR IH EHLL+ +D LSVTGEFHGLS KG+K+QR   S
Sbjct: 1227 IYGIDAAWKYFLRHLKSATSDTGRCIHEEHLLMAADCLSVTGEFHGLSIKGLKKQRDQAS 1286

Query: 824  ISSPFTQACFSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHS 645
            ISSPFT AC SNP   FI AAK  S DHL GT+DA+AWG+EAPVGTGGPF+IIYSGKVH+
Sbjct: 1287 ISSPFTLACLSNPGYGFINAAKQGSVDHLGGTLDAMAWGKEAPVGTGGPFEIIYSGKVHN 1346

Query: 644  PKQTENIYEILLKQKHDSSSQIPG----------ADKWKAQPGVDNAGGS---------- 525
            P++TENIY+ LL  K +   Q             + KWK +  + N G S          
Sbjct: 1347 PQKTENIYKTLLNFKVEKPWQDDNKLCRHGDRNVSTKWKHKRILSNTGASTGESIDQLIS 1406

Query: 524  --------------MRRWNEH--------NCTTKKEKNVVCSSQPASVRIGSWDNISAMS 411
                          + +W           + ++  +  +  S++ A    GSW NI  M 
Sbjct: 1407 EEAHTRQGCPCEYPVNKWERQSKGHVVSSSVSSNSDAKMGFSTKSALRSAGSWANIVDMC 1466

Query: 410  SSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFHPKSRCFI 231
            S+L  +LH+YP+N  LNE DKS LMEAL YHPK+DA           GHSP HP SRCF+
Sbjct: 1467 SNLRTILHEYPINGYLNETDKSCLMEALSYHPKRDAKMGTGIQGIKIGHSPLHPGSRCFV 1526

Query: 230  LIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEKELDSRQ 111
            L+RNDGTTEDFSYRKC+I AA  ISPEFG +VEK++  R+
Sbjct: 1527 LVRNDGTTEDFSYRKCIIGAAYSISPEFGSMVEKKMSWRR 1566


>ref|XP_019705595.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Elaeis
            guineensis]
          Length = 1569

 Score = 1598 bits (4139), Expect = 0.0
 Identities = 842/1600 (52%), Positives = 1092/1600 (68%), Gaps = 68/1600 (4%)
 Frame = -1

Query: 4718 MADDSITDKMVPSAQLLGLKFDLLTGDDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 4539
            MA D I + M PS  L G+ FD+LT DDIEK  HV+I +++D+ ++KLG+PNA S+C TC
Sbjct: 1    MASDQIIELMAPSGLLTGITFDILTDDDIEKICHVSIVESNDVTNAKLGLPNASSRCQTC 60

Query: 4538 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXK---- 4371
            GS +  DCEGH G IKLP  IYHPY + E++ ILNQICP C S                 
Sbjct: 61   GSRNTRDCEGHVGFIKLPRTIYHPYFVTEVIQILNQICPGCMSIKGDLQIKDSFDLETWE 120

Query: 4370 --------------TISSIRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGSEKKW 4233
                          TI++++R +LK+   K++    Q+++  V   ++K+       KKW
Sbjct: 121  KFIGEDHVSEAFGKTIAAVKRKVLKLCKSKVSF-SPQSVIQHVKKVYLKNCL--EVRKKW 177

Query: 4232 GTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEV 4059
               D QA CK+C+RN+  WYPA+KFK  S+D  GKK ++I AE N  +PKKF+N SL +V
Sbjct: 178  AKTDAQATCKYCARNATNWYPAVKFKLFSKDMLGKKSLSIIAEVNEKLPKKFQNKSLCDV 237

Query: 4058 LPKDFWNFVPMLPSQHENSVSMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSC 3879
            LP+DFW+FVP    Q E++     NRIT+SP QAF LL+ELD EFI+QF  RR+++FLS 
Sbjct: 238  LPQDFWSFVPSFSQQQESNA----NRITVSPYQAFCLLKELDPEFIKQFALRRDVLFLSY 293

Query: 3878 IPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIA 3699
            +PV+PNC RVVET + ++DGP+LS D+ TKAY+ +VD S+KI+EF +HQQF  +A S I 
Sbjct: 294  LPVAPNCHRVVETSYVHADGPQLSFDERTKAYKRLVDISRKIEEFRQHQQFVPLATSFIT 353

Query: 3698 SRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIG 3519
            +RV DCLNVSKL +  +S GD S            +GLKW+K+VVLSKRSDN FRM MIG
Sbjct: 354  NRVLDCLNVSKLRTRNSSNGDSS----------CLSGLKWLKDVVLSKRSDNAFRMTMIG 403

Query: 3518 DPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKLIFIHS 3339
            DPKI+LG+IG+P D+S+ L +SEHVNA+N+EKL  SC LHL++  EL  R KG+L  +  
Sbjct: 404  DPKIKLGQIGIPFDLSQNLCVSEHVNAYNLEKLNMSCNLHLLTNEELHTRSKGRLTSVRK 463

Query: 3338 SDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGD 3159
            S+QLQ+GDT+ R LE+GD+I+VNR PSVH HSL+ALS KILP++S VSINPLCCAPLLGD
Sbjct: 464  SNQLQIGDTIYRPLENGDLILVNRPPSVHQHSLIALSAKILPIQSVVSINPLCCAPLLGD 523

Query: 3158 FDGDCLHGFVPQSVRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFF 2979
            FDGDCLHG+VPQSV  RV           L N QDGRSL+SL+HDSLTAAHLL    VF 
Sbjct: 524  FDGDCLHGYVPQSVHCRVELGELVSLDHQLLNAQDGRSLVSLSHDSLTAAHLLTSNIVFL 583

Query: 2978 SKFEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNG 2799
            +KFEMQQLEML   +  FP+IIKAP  + P WTG+QLFSM+LP  M+FS   + +++  G
Sbjct: 584  NKFEMQQLEMLCFSRLPFPSIIKAPTTRFPLWTGQQLFSMVLPPAMDFSMGPNKIQISKG 643

Query: 2798 DLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYL 2619
            +++ + GVS   +N  S +FS MF+CYG KA ++LFS QEVLCEYLT RGLSVSL D+YL
Sbjct: 644  EVLSTSGVSSWLQNTTSSIFSSMFKCYGRKALDFLFSAQEVLCEYLTTRGLSVSLGDVYL 703

Query: 2618 TSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFAR 2439
            +SD Y+R K+ DEV + LEEA+ +CH  ++ML+PE+  + K+HD T       N+ N+AR
Sbjct: 704  SSDLYSRRKMTDEVFYGLEEAEDACHIKQIMLDPEMEFLFKSHDGT-----YRNLYNYAR 758

Query: 2438 ERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXL 2259
             R+ ISQ S+A F+D+F DLQ+V+  YIS +NS+  M++AGSKGSL+K           L
Sbjct: 759  NRKHISQFSVAAFRDVFYDLQNVIHQYISRDNSMLAMIHAGSKGSLSKLVQQGACLGLQL 818

Query: 2258 SAKPLPFSIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECF 2079
             + PLPF IP +LSC  WN  K  +  +  QD    + G+NSYAV++ASFLDGL+PLECF
Sbjct: 819  PSSPLPFRIPRRLSCVSWNAQKKSEHGI-PQDVVECAGGQNSYAVVKASFLDGLNPLECF 877

Query: 2078 VHALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKS 1899
            VHA++ RSNMFSENAELPG LTRK+MFYMRD+  AYDGTVR+ YGQQLVQFSY  P K S
Sbjct: 878  VHAITGRSNMFSENAELPGMLTRKLMFYMRDLYAAYDGTVRSTYGQQLVQFSYNIPGKSS 937

Query: 1898 CEDCDHSHFSIGE-DSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKV 1722
             E+ D S  + GE D+  + LGG PVGS AAC+ISEAAYGALDHP+NSLE+SPL+NLKKV
Sbjct: 938  GEEGD-SCMTYGENDAENNSLGGQPVGSWAACAISEAAYGALDHPMNSLEASPLMNLKKV 996

Query: 1721 LECAPTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHD 1542
            L+C  T+ S++++AS+ LS  LK+  YGFEYGAL VKNHLDRV FSD+VT+++IFY+  D
Sbjct: 997  LDCGKTKASMDKSASIFLSKGLKKQRYGFEYGALEVKNHLDRVLFSDLVTTILIFYAGLD 1056

Query: 1541 AKGTKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQ 1368
             +GTK    SPW+ HFHV+KE ++RKR+  Q+I+D L+GNYN  RE  G +LP L ++S+
Sbjct: 1057 VQGTK---FSPWITHFHVSKERMMRKRLRAQTIIDQLSGNYNFVRETVGTELPVLHISSK 1113

Query: 1367 SCVLGNEQKNLEE-LCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEF 1191
             C L + Q   +E  C++V  V++ +       S   LDTIRD ++P+LL+TLIKGF EF
Sbjct: 1114 DCSLIDIQNEHDETFCVTV-LVDAPK-------SDIQLDTIRDVIIPLLLETLIKGFWEF 1165

Query: 1190 KQVDILWDSQPKPDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRLDGAHDI 1011
            K+V+IL D Q      LFL++ M E C P KFW  LQ+AC+PIMD+IDWE+S  +  +DI
Sbjct: 1166 KKVEILCDIQRDSLDGLFLRVTMSEKCLPGKFWSALQNACIPIMDLIDWEQSHPNSMYDI 1225

Query: 1010 SDVFGIISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAH 831
              ++GI +++ YFL  LKSA SDIGR +H EHLL+ +D LSVTGEFHGLS KG+K+QR  
Sbjct: 1226 FSIYGIDAAWKYFLKYLKSATSDIGRCMHEEHLLMAADCLSVTGEFHGLSTKGLKKQRDQ 1285

Query: 830  LSISSPFTQACFSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKV 651
             SISSPFT AC SNP   FI AAK  S DHL GT+DA+AWG+EAP+GTGGPF+IIYSGKV
Sbjct: 1286 ASISSPFTLACLSNPGNGFINAAKQGSVDHLCGTLDAMAWGKEAPIGTGGPFEIIYSGKV 1345

Query: 650  HSPKQTENIYEILLKQKHDSSSQIPG----------ADKWKAQPGVDNAGGS-------- 525
            H+ ++ ENIY+ L+  K +   Q             + KWK +  + NA  S        
Sbjct: 1346 HNSQKNENIYKTLMNFKVEKPWQDDNKLCRHGDKNVSTKWKHKRILSNADASTGESIDQL 1405

Query: 524  ----------------MRRWNEHNCTTKKEKNVVCSS----------QPASVRIGSWDNI 423
                            + +W   +       N   +S          + A    GSW NI
Sbjct: 1406 ISDEACMGQGCPCENPVNKWERQSKGHLVSSNAGSNSDIKTTLGFRKRSALSSAGSWANI 1465

Query: 422  SAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFHPKS 243
              M S+L  +LH+YP+N  LNE DKS LMEAL YHPK++A           GHSP HP S
Sbjct: 1466 VDMCSNLRTILHEYPINGYLNETDKSCLMEALSYHPKREAKMGTGVQGIKIGHSPLHPGS 1525

Query: 242  RCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEKEL 123
            RCF+L+RNDGTTEDFSYRKC+I AA  IS E G ++EK++
Sbjct: 1526 RCFVLVRNDGTTEDFSYRKCIIGAAYNISRELGSVIEKKM 1565


>gb|ONK73338.1| uncharacterized protein A4U43_C04F29910 [Asparagus officinalis]
          Length = 1445

 Score = 1566 bits (4054), Expect = 0.0
 Identities = 799/1190 (67%), Positives = 945/1190 (79%), Gaps = 4/1190 (0%)
 Frame = -1

Query: 3680 LNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKIQL 3501
            L+ ++LH+N  S  + + Y S +ND+PS TGLKW+KEVVLSKRSDNTFR+IMIGDPK++ 
Sbjct: 273  LSPAQLHNNSTSAEEQAAY-SVKNDKPSCTGLKWVKEVVLSKRSDNTFRVIMIGDPKMKT 331

Query: 3500 GEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKLIFIHSSDQLQV 3321
            GEIGLPRD+   LYI+EHVN HNV+KLK  C LH+ SK EL ARRK KLI IH+S QLQV
Sbjct: 332  GEIGLPRDICENLYIAEHVNNHNVKKLKEVCELHVRSKRELHARRKDKLILIHNSKQLQV 391

Query: 3320 GDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCL 3141
            GDT N+ LEDGDIIMVNRNPSVHPHSLLALSVKILPV+  VSINPLCCAPLLGDFDGDCL
Sbjct: 392  GDTFNKPLEDGDIIMVNRNPSVHPHSLLALSVKILPVKDVVSINPLCCAPLLGDFDGDCL 451

Query: 3140 HGFVPQSVRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQ 2961
            HGFVPQS+ ARV           LFN Q G+SLLSLTHDSLTAAHLLME E+F +K EMQ
Sbjct: 452  HGFVPQSIGARVELKELLSLDSQLFNYQGGQSLLSLTHDSLTAAHLLMEDEIFLNKREMQ 511

Query: 2960 QLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSP 2781
            QL ML P   +FP +IKAP ++MP+WTG QLFSM+LP++M+F+  SS  E+  GDLVP  
Sbjct: 512  QLNMLCPWNLEFPTVIKAPTIEMPQWTGWQLFSMLLPIDMDFAPASSSFEIRKGDLVPPS 571

Query: 2780 GV----SFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTS 2613
            GV    S SS+  IS +FSRMFECYG KA+ YLF FQE+LCEYLTMRGLSVSLHD+YL S
Sbjct: 572  GVSSSSSSSSQKIISEIFSRMFECYGGKAHEYLFHFQEILCEYLTMRGLSVSLHDIYLAS 631

Query: 2612 DPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARER 2433
            + YTR KLI+EVS ALEEAK S  F+ELMLEP +G ++K HDE++DLSHT+++SN  R  
Sbjct: 632  NAYTRTKLINEVSCALEEAKGSFRFSELMLEPMVGFLLKEHDESDDLSHTIDVSNITR-T 690

Query: 2432 RPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSA 2253
            RP+S+ASIAKFKD+FRDLQ+VV +Y+S++NSLFTMM AGSKGSL K           LS 
Sbjct: 691  RPMSEASIAKFKDIFRDLQNVVHHYVSADNSLFTMMRAGSKGSLLKLVQQGLCLGLQLST 750

Query: 2252 KPLPFSIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVH 2073
            K LPF+IPL+LSC  WN+HKAF+RS+  +D S+ S GENSYAVIEASFLDGL+PLECF H
Sbjct: 751  KTLPFTIPLELSCFAWNEHKAFNRSVSEKDESDFSRGENSYAVIEASFLDGLNPLECFFH 810

Query: 2072 ALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCE 1893
            AL+CR+NMFSENA++PGTLTRKIMF+MRDI VAYDGTVRN+YGQQ+VQFS+ SP +KS  
Sbjct: 811  ALACRANMFSENAQVPGTLTRKIMFHMRDIYVAYDGTVRNSYGQQVVQFSHQSPYEKS-- 868

Query: 1892 DCDHSHFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLEC 1713
               +S FSI EDS   +L G PVGSLAACSISEAAYGALD PVNSLESSPLLNLKKVLEC
Sbjct: 869  --RNSQFSI-EDS---QLSGQPVGSLAACSISEAAYGALDTPVNSLESSPLLNLKKVLEC 922

Query: 1712 APTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKG 1533
             P +TS  RTASL LSNKL++LNYGFEYGALAV++HLD+VFFSD+VTSVMIFY+A D K 
Sbjct: 923  VPGKTSTERTASLVLSNKLRKLNYGFEYGALAVRDHLDKVFFSDVVTSVMIFYAARDIKE 982

Query: 1532 TKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFREGRKLPRLFMTSQSCVLG 1353
            TKG +LSPWV HFH+NKE + +K I+ QSIVDAL+GNY+ FREG+ LPRLFMT Q+C+L 
Sbjct: 983  TKGPKLSPWVSHFHINKERMAKKGIHAQSIVDALSGNYHLFREGKMLPRLFMTCQNCLLD 1042

Query: 1352 NEQKNLEELCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDIL 1173
            N  KN EE CI V A        +D  SPT+LD IRD+V+PVLLQTLIKGF EFKQVDIL
Sbjct: 1043 N-AKNFEESCILVTA--------EDYNSPTILDIIRDTVIPVLLQTLIKGFTEFKQVDIL 1093

Query: 1172 WDSQPKPDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRLDGAHDISDVFGI 993
            WDS  KPDG+L +K+ M +SC  R FW  LQ+AC+PIMD+IDW RS  DG +DIS+ FGI
Sbjct: 1094 WDSHSKPDGELIVKVTMAKSCALRNFWHALQNACIPIMDLIDWGRSHPDGVYDISNAFGI 1153

Query: 992  ISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSP 813
            +S+Y+YFL SLKS +SDIGRNIHLEHLLLVSDSLSVTGEFHGL+AK +KQQ+AHLSIS+P
Sbjct: 1154 VSAYNYFLRSLKSTISDIGRNIHLEHLLLVSDSLSVTGEFHGLTAKALKQQKAHLSISAP 1213

Query: 812  FTQACFSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQT 633
            FT+ACFSNPEK FI+AAK    D+L GTVDAVAWGQEAPVGTGG FK++YSGK H PK +
Sbjct: 1214 FTEACFSNPEKSFIDAAKQGLADNLQGTVDAVAWGQEAPVGTGGSFKLMYSGKAHIPKPS 1273

Query: 632  ENIYEILLKQKHDSSSQIPGADKWKAQPGVDNAGGSMRRWNEHNCTTKKEKNVVCSSQPA 453
            +N+YE LL  K D   Q P ADKW  +  V N  GSM+ W+  N T++K+  V  SS+  
Sbjct: 1274 DNVYETLLSLKSDKPWQTPNADKW-WRGAVSNISGSMKTWDGFNFTSEKKTMVRSSSKSD 1332

Query: 452  SVRIGSWDNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXX 273
            S+ IGSW +I AM S+L R+LHQY ++H LNE DKSL++EALMYHPKKDA          
Sbjct: 1333 SMPIGSWSSIEAMRSALRRILHQYSIDHHLNEVDKSLVIEALMYHPKKDAKIGCGIKEIK 1392

Query: 272  XGHSPFHPKSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEKEL 123
             G  P+HP++RCFILIR+DGTTEDFSY KCV EAA Q+S EF L  + +L
Sbjct: 1393 VGCGPYHPETRCFILIRSDGTTEDFSYHKCVNEAARQLSIEFKLTKKSDL 1442



 Score =  340 bits (872), Expect = 6e-92
 Identities = 174/278 (62%), Positives = 206/278 (74%), Gaps = 16/278 (5%)
 Frame = -1

Query: 4745 KGQSSWKPIMADDSITDKMVPSAQLLGLKFDLLTGDDIEKFSHVNINDASDLVSSKLGVP 4566
            + QSS   IM  D  +++MVPSAQLLG+KFDL+TG DIEKFS VN+ND+SDL S KLG+P
Sbjct: 2    QSQSSQHTIMEKDLNSERMVPSAQLLGIKFDLMTGPDIEKFSQVNVNDSSDLNSVKLGLP 61

Query: 4565 NACSQCTTCGSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXX 4386
            NA S+CTTCGST+  DCEGHFGVIKLP  IYHPYL+ E+VHILNQICP CKS        
Sbjct: 62   NASSECTTCGSTNTKDCEGHFGVIKLPATIYHPYLVNEVVHILNQICPGCKSIKKQTRKD 121

Query: 4385 XXXXKTISSIRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAEC 4206
                K I +++RLLLKMKFEK+ MPQ+QNLLS+VA   VKHLKFSGS KKW +V+NQA C
Sbjct: 122  MQIKKKIETLQRLLLKMKFEKLKMPQNQNLLSKVAK--VKHLKFSGSNKKWASVENQASC 179

Query: 4205 KHCSRNSEE--WYPAIKFKTL------------SRDTNGKKCVAITAEFN--VPKKFENM 4074
            K+CS+NS+   WYPAIKF+TL              D+ GKKCVAI AE N  VP++F N 
Sbjct: 180  KYCSKNSQNKYWYPAIKFETLLTDSKGKIVSKGKTDSKGKKCVAIVAEINERVPRQFRNK 239

Query: 4073 SLSEVLPKDFWNFVPMLPSQHENSVSMDPNRITLSPVQ 3960
            SLSEVLPKDFW+F+PM+  QH  S SMD N+I LSP Q
Sbjct: 240  SLSEVLPKDFWDFMPMVSYQHNKSESMDVNKIILSPAQ 277


>ref|XP_009411449.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Musa
            acuminata subsp. malaccensis]
 ref|XP_009411450.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Musa
            acuminata subsp. malaccensis]
          Length = 1569

 Score = 1459 bits (3778), Expect = 0.0
 Identities = 781/1598 (48%), Positives = 1038/1598 (64%), Gaps = 69/1598 (4%)
 Frame = -1

Query: 4709 DSITDKMVPSAQLLGLKFDLLTGDDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGST 4530
            D I ++ +PS +L G+ FDL+T  DIEK  +VNI +A+++ S+KLG+PNA SQC TCGS 
Sbjct: 4    DLIMEQAIPSGRLSGIIFDLMTDADIEKICNVNIVEANEVTSAKLGLPNASSQCATCGSR 63

Query: 4529 HIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISS--- 4359
            +I DC+GH G +KLP  IYHP+ + E+VHILNQICP CK+               S    
Sbjct: 64   NIRDCDGHSGFVKLPKTIYHPFFVTEVVHILNQICPGCKTVKKDLKMKGSVILEASEKAI 123

Query: 4358 ----------------IRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGT 4227
                            ++R LLK+   K+ +P    L        +   K   + K W +
Sbjct: 124  GEGIYILEAFGKNLTVLQRRLLKLCRSKLLLPTRSILARNTKVRFINLKKILKTRKNWVS 183

Query: 4226 VDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEVLP 4053
             D+Q  CK+C+R +  WYP +KFK  S+D  G++ ++I AE N  +PKKF + SL EVLP
Sbjct: 184  KDSQVCCKYCARKANGWYPPVKFKISSKDILGRRSLSIIAEVNEKLPKKFHSQSLGEVLP 243

Query: 4052 KDFWNFVPMLPSQHENSVSMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIP 3873
            +D+WNF+P +           P++I L+P Q F LL ELD EFI+QFV RREL+FLS +P
Sbjct: 244  EDYWNFIPKVSLLQ----GAKPSKIDLTPHQVFCLLSELDPEFIQQFVSRRELLFLSYLP 299

Query: 3872 VSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASR 3693
            ++PNCQRVVET H ++DGP+LS D+ T+AY+ + D SKKI EF  HQQFG +A S   SR
Sbjct: 300  ITPNCQRVVETSHVFADGPKLSFDERTRAYKRLADVSKKIGEFRHHQQFGPLATSYTMSR 359

Query: 3692 VHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDP 3513
            V DC N SKLH++ +S GD            S++G++W+K+VVLSKR+DN FRM M+GDP
Sbjct: 360  VLDCFNASKLHASSSSRGD------------STSGIRWLKDVVLSKRTDNVFRMTMVGDP 407

Query: 3512 KIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKLIFIHSSD 3333
            KI+L EIG+P D+S +L ++E VN++N+EKL  SC LHL+ K  L  R KG+L  +H ++
Sbjct: 408  KIKLQEIGIPFDISESLIVAEQVNSYNLEKLNMSCNLHLLRKEGLNTRSKGQLTSLHKTN 467

Query: 3332 QLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFD 3153
            QLQVGD ++R LE+GDII+VNR PSVH HSL+ALSV ILP++S +SINPLCCAPLLGDFD
Sbjct: 468  QLQVGDIVSRPLENGDIILVNRPPSVHQHSLIALSVMILPIQSVISINPLCCAPLLGDFD 527

Query: 3152 GDCLHGFVPQSVRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSK 2973
            GDCLHG+VPQS+  RV           LFN QDGRSL+SLTHDSLTAA+LL     F +K
Sbjct: 528  GDCLHGYVPQSIGCRVELQELLSLDHQLFNAQDGRSLVSLTHDSLTAAYLLTANREFLNK 587

Query: 2972 FEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDL 2793
             +MQQL ML P     PA++K P  Q+P WTG QLFSM+LP  M+F   S  + +  G++
Sbjct: 588  VDMQQLAMLCPFPMPPPAVVKTPKFQIPLWTGEQLFSMLLPPTMDFGVNSRNM-ISKGEV 646

Query: 2792 VPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTS 2613
            + S G SF  +N  +GLF+ MF+ YG KA +YL   QE+LCEYLT+RGLSVSL D+YL+S
Sbjct: 647  MASLGGSFWLQNTTTGLFTTMFKHYGRKALDYLCCSQELLCEYLTLRGLSVSLGDVYLSS 706

Query: 2612 DPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARER 2433
            D Y+R K++DE+ F LEEA+ +C   +LMLEPE+  I++  ++ ED    ++    A ER
Sbjct: 707  DSYSRLKMMDEIYFGLEEAEDACQVMQLMLEPEME-ILRNQNKDEDTLDCISQYKIASER 765

Query: 2432 RPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSA 2253
              +SQ SIA FK+++ DL S +  +I+ +NS+  M+ AGSKGSL K           L A
Sbjct: 766  TCVSQVSIAAFKNVYHDLLSQIYQFINKDNSMLEMIDAGSKGSLVKLIQQGACLGLQLFA 825

Query: 2252 KPLPFSIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVH 2073
             PLPF++P KL+C  WN  KA D   G+ D + SS G++SYAVI  SFLDGL+PLECFVH
Sbjct: 826  HPLPFTVPSKLNCCMWNNLKALDG--GISDAAKSSCGQSSYAVIGTSFLDGLNPLECFVH 883

Query: 2072 ALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCE 1893
            A+  R+N+F+ENAELPGTLTRK+MFYMRD+ +AYDGTVR+AYGQQ+V+FSY   E  S E
Sbjct: 884  AICGRANLFTENAELPGTLTRKLMFYMRDLYLAYDGTVRSAYGQQIVEFSYSILE-DSTE 942

Query: 1892 DCDHSHFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLEC 1713
              +      G+D+    LGG PVGS AACSISEAAYG+L+ P+NSLE SPL+ LK VL+C
Sbjct: 943  GGESCVAYDGKDAEYTGLGGEPVGSWAACSISEAAYGSLEFPMNSLEYSPLMKLKMVLDC 1002

Query: 1712 APTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKG 1533
              +  S N TA L LS +L    YG EYGAL VKNHL+RV F +++ +VMI Y  HD +G
Sbjct: 1003 CKSNASTNHTALLFLSKRLHGWRYGCEYGALEVKNHLERVCFFNLIITVMILYDGHDVQG 1062

Query: 1532 TKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCV 1359
            T     SPW++HFHV+K+ +LR+R+NVQ + + L  +YNC RE     LPRL   S++C 
Sbjct: 1063 T---NFSPWIMHFHVSKDKMLRRRLNVQLVKNELIKHYNCMRERMNPMLPRLCFVSKNCS 1119

Query: 1358 LGNEQKNLEE-LCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQV 1182
               + K  ++  C+SV A E+SE   Q       LDTIRD V+P+LL+T IKGF   ++V
Sbjct: 1120 SAYKWKEHDDSFCMSV-AAETSESLIQ-------LDTIRDMVIPLLLETPIKGFWASEKV 1171

Query: 1181 DILWDSQPKPDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRLDGAHDISDV 1002
            +IL +S P    +LFL++ M + C P  FW  LQ AC+PIMD+IDW+ S  D  ++IS  
Sbjct: 1172 EILCESLPGSGSELFLRVTMSKKCLPGSFWSDLQDACIPIMDLIDWQCSHPDNVYNISGT 1231

Query: 1001 FGIISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSI 822
            +GI +++ YF+ SLKS  +DIGR+IH  HL + +D LSVTGEFHGLS KG++QQR  +SI
Sbjct: 1232 YGIDAAWKYFVKSLKSVTADIGRDIHKRHLFMAADCLSVTGEFHGLSTKGLRQQRNDMSI 1291

Query: 821  SSPFTQACFSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSP 642
            SSPF QAC SNP  CF+ AAK  S DHL GT+DAVAWG+EAP GTGGPF+I+YSGKVH+ 
Sbjct: 1292 SSPFAQACLSNPVNCFVNAAKQGSMDHLSGTLDAVAWGKEAPSGTGGPFEIVYSGKVHNL 1351

Query: 641  KQTENIYEILLKQKHDSSSQIPGAD-------------KWKAQP-------GVDNAGGSM 522
             + E IY    K  H   +++   D             KWK QP       G        
Sbjct: 1352 TRGEGIY----KNLHSIKAELQQGDGEVCMAANQTVPAKWKQQPKYSTNFDGAKETIDPQ 1407

Query: 521  RRWNEH-----------NCTTKKEKNVVCS--------------SQPASVRIGSWDNISA 417
                +H           NC    ++  + +              S+ +S  + SW ++  
Sbjct: 1408 TSDEDHLKERIVSKFRTNCKGYNKQQQISANDFLAKSHLTFGLRSKFSSESVSSWTDVVD 1467

Query: 416  MSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFHPKSRC 237
            M SSL  +L++YP++  L+E D S L+EAL YHPK+ A           G SP HP SRC
Sbjct: 1468 MCSSLRTILYKYPIDGFLDEKDNSSLIEALNYHPKRAAKIGSGIQKIKVGCSPLHPGSRC 1527

Query: 236  FILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEKEL 123
            F+L+R+DG+ EDFSYRKCV+ AA  ISPEFG +V K++
Sbjct: 1528 FVLLRSDGSLEDFSYRKCVVGAAKLISPEFGSIVHKKI 1565


>ref|XP_009411452.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Musa
            acuminata subsp. malaccensis]
          Length = 1562

 Score = 1444 bits (3738), Expect = 0.0
 Identities = 778/1598 (48%), Positives = 1033/1598 (64%), Gaps = 69/1598 (4%)
 Frame = -1

Query: 4709 DSITDKMVPSAQLLGLKFDLLTGDDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGST 4530
            D I ++ +PS +L G+ FDL+T  DIEK  +VNI +A+++ S+KLG+PNA SQC TCGS 
Sbjct: 4    DLIMEQAIPSGRLSGIIFDLMTDADIEKICNVNIVEANEVTSAKLGLPNASSQCATCGSR 63

Query: 4529 HIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISS--- 4359
            +I DC+GH G +KLP  IYHP+ + E+VHILNQICP CK+               S    
Sbjct: 64   NIRDCDGHSGFVKLPKTIYHPFFVTEVVHILNQICPGCKTVKKDLKMKGSVILEASEKAI 123

Query: 4358 ----------------IRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGT 4227
                            ++R LLK+   K+ +P    L        +   K   + K W +
Sbjct: 124  GEGIYILEAFGKNLTVLQRRLLKLCRSKLLLPTRSILARNTKVRFINLKKILKTRKNWVS 183

Query: 4226 VDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEVLP 4053
             D+Q       R +  WYP +KFK  S+D  G++ ++I AE N  +PKKF + SL EVLP
Sbjct: 184  KDSQ-------RKANGWYPPVKFKISSKDILGRRSLSIIAEVNEKLPKKFHSQSLGEVLP 236

Query: 4052 KDFWNFVPMLPSQHENSVSMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIP 3873
            +D+WNF+P +           P++I L+P Q F LL ELD EFI+QFV RREL+FLS +P
Sbjct: 237  EDYWNFIPKVSLLQ----GAKPSKIDLTPHQVFCLLSELDPEFIQQFVSRRELLFLSYLP 292

Query: 3872 VSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASR 3693
            ++PNCQRVVET H ++DGP+LS D+ T+AY+ + D SKKI EF  HQQFG +A S   SR
Sbjct: 293  ITPNCQRVVETSHVFADGPKLSFDERTRAYKRLADVSKKIGEFRHHQQFGPLATSYTMSR 352

Query: 3692 VHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDP 3513
            V DC N SKLH++ +S GD            S++G++W+K+VVLSKR+DN FRM M+GDP
Sbjct: 353  VLDCFNASKLHASSSSRGD------------STSGIRWLKDVVLSKRTDNVFRMTMVGDP 400

Query: 3512 KIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKLIFIHSSD 3333
            KI+L EIG+P D+S +L ++E VN++N+EKL  SC LHL+ K  L  R KG+L  +H ++
Sbjct: 401  KIKLQEIGIPFDISESLIVAEQVNSYNLEKLNMSCNLHLLRKEGLNTRSKGQLTSLHKTN 460

Query: 3332 QLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFD 3153
            QLQVGD ++R LE+GDII+VNR PSVH HSL+ALSV ILP++S +SINPLCCAPLLGDFD
Sbjct: 461  QLQVGDIVSRPLENGDIILVNRPPSVHQHSLIALSVMILPIQSVISINPLCCAPLLGDFD 520

Query: 3152 GDCLHGFVPQSVRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSK 2973
            GDCLHG+VPQS+  RV           LFN QDGRSL+SLTHDSLTAA+LL     F +K
Sbjct: 521  GDCLHGYVPQSIGCRVELQELLSLDHQLFNAQDGRSLVSLTHDSLTAAYLLTANREFLNK 580

Query: 2972 FEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDL 2793
             +MQQL ML P     PA++K P  Q+P WTG QLFSM+LP  M+F   S  + +  G++
Sbjct: 581  VDMQQLAMLCPFPMPPPAVVKTPKFQIPLWTGEQLFSMLLPPTMDFGVNSRNM-ISKGEV 639

Query: 2792 VPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTS 2613
            + S G SF  +N  +GLF+ MF+ YG KA +YL   QE+LCEYLT+RGLSVSL D+YL+S
Sbjct: 640  MASLGGSFWLQNTTTGLFTTMFKHYGRKALDYLCCSQELLCEYLTLRGLSVSLGDVYLSS 699

Query: 2612 DPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARER 2433
            D Y+R K++DE+ F LEEA+ +C   +LMLEPE+  I++  ++ ED    ++    A ER
Sbjct: 700  DSYSRLKMMDEIYFGLEEAEDACQVMQLMLEPEME-ILRNQNKDEDTLDCISQYKIASER 758

Query: 2432 RPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSA 2253
              +SQ SIA FK+++ DL S +  +I+ +NS+  M+ AGSKGSL K           L A
Sbjct: 759  TCVSQVSIAAFKNVYHDLLSQIYQFINKDNSMLEMIDAGSKGSLVKLIQQGACLGLQLFA 818

Query: 2252 KPLPFSIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVH 2073
             PLPF++P KL+C  WN  KA D   G+ D + SS G++SYAVI  SFLDGL+PLECFVH
Sbjct: 819  HPLPFTVPSKLNCCMWNNLKALDG--GISDAAKSSCGQSSYAVIGTSFLDGLNPLECFVH 876

Query: 2072 ALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCE 1893
            A+  R+N+F+ENAELPGTLTRK+MFYMRD+ +AYDGTVR+AYGQQ+V+FSY   E  S E
Sbjct: 877  AICGRANLFTENAELPGTLTRKLMFYMRDLYLAYDGTVRSAYGQQIVEFSYSILE-DSTE 935

Query: 1892 DCDHSHFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLEC 1713
              +      G+D+    LGG PVGS AACSISEAAYG+L+ P+NSLE SPL+ LK VL+C
Sbjct: 936  GGESCVAYDGKDAEYTGLGGEPVGSWAACSISEAAYGSLEFPMNSLEYSPLMKLKMVLDC 995

Query: 1712 APTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKG 1533
              +  S N TA L LS +L    YG EYGAL VKNHL+RV F +++ +VMI Y  HD +G
Sbjct: 996  CKSNASTNHTALLFLSKRLHGWRYGCEYGALEVKNHLERVCFFNLIITVMILYDGHDVQG 1055

Query: 1532 TKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCV 1359
            T     SPW++HFHV+K+ +LR+R+NVQ + + L  +YNC RE     LPRL   S++C 
Sbjct: 1056 T---NFSPWIMHFHVSKDKMLRRRLNVQLVKNELIKHYNCMRERMNPMLPRLCFVSKNCS 1112

Query: 1358 LGNEQKNLEE-LCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQV 1182
               + K  ++  C+SV A E+SE   Q       LDTIRD V+P+LL+T IKGF   ++V
Sbjct: 1113 SAYKWKEHDDSFCMSV-AAETSESLIQ-------LDTIRDMVIPLLLETPIKGFWASEKV 1164

Query: 1181 DILWDSQPKPDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRLDGAHDISDV 1002
            +IL +S P    +LFL++ M + C P  FW  LQ AC+PIMD+IDW+ S  D  ++IS  
Sbjct: 1165 EILCESLPGSGSELFLRVTMSKKCLPGSFWSDLQDACIPIMDLIDWQCSHPDNVYNISGT 1224

Query: 1001 FGIISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSI 822
            +GI +++ YF+ SLKS  +DIGR+IH  HL + +D LSVTGEFHGLS KG++QQR  +SI
Sbjct: 1225 YGIDAAWKYFVKSLKSVTADIGRDIHKRHLFMAADCLSVTGEFHGLSTKGLRQQRNDMSI 1284

Query: 821  SSPFTQACFSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSP 642
            SSPF QAC SNP  CF+ AAK  S DHL GT+DAVAWG+EAP GTGGPF+I+YSGKVH+ 
Sbjct: 1285 SSPFAQACLSNPVNCFVNAAKQGSMDHLSGTLDAVAWGKEAPSGTGGPFEIVYSGKVHNL 1344

Query: 641  KQTENIYEILLKQKHDSSSQIPGAD-------------KWKAQP-------GVDNAGGSM 522
             + E IY    K  H   +++   D             KWK QP       G        
Sbjct: 1345 TRGEGIY----KNLHSIKAELQQGDGEVCMAANQTVPAKWKQQPKYSTNFDGAKETIDPQ 1400

Query: 521  RRWNEH-----------NCTTKKEKNVVCS--------------SQPASVRIGSWDNISA 417
                +H           NC    ++  + +              S+ +S  + SW ++  
Sbjct: 1401 TSDEDHLKERIVSKFRTNCKGYNKQQQISANDFLAKSHLTFGLRSKFSSESVSSWTDVVD 1460

Query: 416  MSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFHPKSRC 237
            M SSL  +L++YP++  L+E D S L+EAL YHPK+ A           G SP HP SRC
Sbjct: 1461 MCSSLRTILYKYPIDGFLDEKDNSSLIEALNYHPKRAAKIGSGIQKIKVGCSPLHPGSRC 1520

Query: 236  FILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEKEL 123
            F+L+R+DG+ EDFSYRKCV+ AA  ISPEFG +V K++
Sbjct: 1521 FVLLRSDGSLEDFSYRKCVVGAAKLISPEFGSIVHKKI 1558


>ref|XP_020084500.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Ananas comosus]
 ref|XP_020084501.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Ananas comosus]
          Length = 1545

 Score = 1428 bits (3697), Expect = 0.0
 Identities = 774/1580 (48%), Positives = 1034/1580 (65%), Gaps = 48/1580 (3%)
 Frame = -1

Query: 4718 MADDSITDKMVPSAQLLGLKFDLLTGDDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 4539
            MAD+ I ++ VPS  L GLKFDL+TGDDIEK S+ +I +A+DL ++KLG+PNA SQC TC
Sbjct: 1    MADEQIGEQAVPSGILTGLKFDLMTGDDIEKLSNASIVEANDLTNAKLGLPNALSQCATC 60

Query: 4538 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPAC------------------- 4416
            GS ++  C+GHFG IKLP  IYHPY + EIV ILNQICP C                   
Sbjct: 61   GSKNLRGCDGHFGAIKLPAIIYHPYFVGEIVQILNQICPGCLSVKQDQEAKGSSMLEATE 120

Query: 4415 KSXXXXXXXXXXXXKTISSIRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGS-EK 4239
            K             K +  +++ LLK+   K+ +     +L+R +   + +LK      K
Sbjct: 121  KFVESDLLILKALEKNLGGLQKKLLKICKSKLLL---SGILARGSKVRICYLKKRVKFRK 177

Query: 4238 KWGTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLS 4065
            +W   D Q+ CK C+      YP+++FK  S+D  GK+ ++I AE N  +PKKF+N S+ 
Sbjct: 178  RWARTDKQSSCKFCASTPNNRYPSVRFKISSKDMVGKRNLSIVAEVNEKLPKKFQNKSMD 237

Query: 4064 EVLPKDFWNFVPMLPSQHENSVSMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFL 3885
            EVLP+D+W+F+PM   Q +    +  +RITLSP QAF+LL++LD EF++QFVPRREL+FL
Sbjct: 238  EVLPQDYWDFIPMDQQQRQ----LKTSRITLSPHQAFHLLKQLDPEFLKQFVPRRELLFL 293

Query: 3884 SCIPVSPNCQRVVETIHTYSDGPRLS-HDKSTKAYRGVVDASKKIDEFHKHQQFGFVAAS 3708
            S +PV+ N  R +ET H ++DGP+LS  D+ TKAY+ VV+ S++IDEF +H QF   A+S
Sbjct: 294  SSLPVTANSHRAMETSHPHADGPQLSFRDERTKAYKKVVEVSRRIDEFRQHPQFRAFASS 353

Query: 3707 LIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSS---TGLKWIKEVVLSKRSDNTF 3537
             +++RV DCLN SKLHS            S  N +P S   +GLKW+KEV+LSKRSD  F
Sbjct: 354  YVSNRVMDCLNASKLHS------------STSNGEPISSGVSGLKWLKEVILSKRSDYAF 401

Query: 3536 RMIMIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGK 3357
            R++M+GDPKI+L EIG+P  ++  L IS+HVN++N+EKL +SC LHL++K EL ARR G+
Sbjct: 402  RLVMVGDPKIKLDEIGIPLSLAENLLISDHVNSYNLEKLNTSCNLHLLNKEELHARRDGQ 461

Query: 3356 LIFIHSSDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCC 3177
            LI +   DQLQ+GD   R LE+GD+I++NR PSVH HSL+ALSVK+LP+  A+SINPLCC
Sbjct: 462  LISVRKPDQLQIGDIFYRPLENGDLILINRPPSVHQHSLIALSVKVLPIHFAISINPLCC 521

Query: 3176 APLLGDFDGDCLHGFVPQSVRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLM 2997
            APLLGDFDGDCLHG++PQS+ +RV           L N QDGRSL+SL+HDSL AA+LL 
Sbjct: 522  APLLGDFDGDCLHGYIPQSIPSRVELRELVGLDQQLLNSQDGRSLVSLSHDSLVAAYLLT 581

Query: 2996 EGEVFFSKFEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSI 2817
              +VF SK+EMQ LEML P    FP+IIK P    P WTG+QLF M+LP  ++FS  S  
Sbjct: 582  GTDVFLSKYEMQHLEMLCPSHMPFPSIIKYPNFGSPLWTGQQLFGMLLPPGIDFSVDSKK 641

Query: 2816 VEVCNGDLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVS 2637
            + + +G+++ SP +SF  ++  S +FS MF+ YG +A ++L S QE+LCEYLTMRGLSVS
Sbjct: 642  LHIIDGEVLSSPQMSFWLQSSTSSIFSTMFKSYGRRALDFLCSAQELLCEYLTMRGLSVS 701

Query: 2636 LHDMYLTSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLN 2457
            L D+YL SD Y+R K+ +EV+F L+EA+ +C   +L+L+P I  ++ + DE ED S++++
Sbjct: 702  LSDLYLASDFYSRTKMTEEVNFGLDEAEDACRVKQLLLDPRIEFLLSSLDECEDSSYSVS 761

Query: 2456 ISNFARERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXX 2277
              +F      I +ASIA FKD+F D+Q  V +Y+S +NS+ +M+ +GSKGSL+K      
Sbjct: 762  HYHFLSNNLQIRKASIAAFKDVFSDIQRTVYHYVSKDNSMLSMIQSGSKGSLSKLAQQSL 821

Query: 2276 XXXXXLSAKPLPFSIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGL 2097
                 LSA   PF IP +LSC  WN+ KA +   G QD     E  N YAVI +SFL GL
Sbjct: 822  CLGLQLSASTFPFRIPQQLSCSWWNKQKALE--CGDQDAIRCEERRNFYAVIRSSFLQGL 879

Query: 2096 SPLECFVHALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYG 1917
            +PLECF+HA+S R+N F ENAE+PGTLTRK+ FY+RD+ VAYDGTVR+AYGQQ+VQFSY 
Sbjct: 880  NPLECFLHAISGRANFFGENAEIPGTLTRKLSFYLRDLYVAYDGTVRSAYGQQIVQFSYD 939

Query: 1916 SPEKKSCEDCDHSHFSIGEDSACDRLG--GHPVGSLAACSISEAAYGALDHPVNSLESSP 1743
              ++   ED  HS   I  D   ++    G PVGS AA SISEAAYG L+HPVNSLE SP
Sbjct: 940  ISDEIFHEDA-HSRI-ISNDHIVEKYNGLGAPVGSWAASSISEAAYGGLEHPVNSLEDSP 997

Query: 1742 LLNLKKVLECAPTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVM 1563
            L+ LK++LEC   RT  +    L LS  L+R  YGFEYGAL VKNHL+   FS++V +VM
Sbjct: 998  LMKLKEILECGKRRTYGDHAGILVLSKGLQRYRYGFEYGALEVKNHLEITLFSEMVNTVM 1057

Query: 1562 IFYSAHDAKGTKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLP 1389
            I Y        +  ++SPW  HFH++KE + +KR+ VQ ++D L  NY+  RE     LP
Sbjct: 1058 ILYEC----PLQRRKISPWSTHFHISKETLKKKRLQVQRVIDKLMENYSLMREKSAGVLP 1113

Query: 1388 RLFMTSQSCVLGNEQKNLEE-LCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTL 1212
             L +T ++C L +E   L++ +CI+V A        +   S T LDTI+D V+ +LL TL
Sbjct: 1114 ALCITKKNCPLLDEHDELDQTVCIAVAA--------EVLDSVTQLDTIKDVVILILLNTL 1165

Query: 1211 IKGFKEFKQVDILWDSQPKPDG-QLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERS 1035
            +KGF   K V+I    Q +PD  +L LK+ M ESC   +FW TLQ AC+PIMD+IDW  S
Sbjct: 1166 VKGFLGIKHVEI----QCQPDSTELSLKVTMSESCSRGRFWSTLQDACIPIMDLIDWNSS 1221

Query: 1034 RLDGAHDISDVFGIISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAK 855
              +  +D   V+GI +++ YFL SLKSA S IGR+IH E L+ V+D  SVTGEFHGLS K
Sbjct: 1222 HPESIYDTFTVYGIDAAWKYFLKSLKSATSGIGRHIHQEQLVTVADCFSVTGEFHGLSTK 1281

Query: 854  GIKQQRAHLSISSPFTQACFSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPF 675
            G+KQQR  LSISSPF+ ACFS+P   FI AAK  S D L G +DAV+WG+E PVGTGGPF
Sbjct: 1282 GLKQQRNRLSISSPFSHACFSSPGNNFINAAKKGSVDELCGILDAVSWGKEPPVGTGGPF 1341

Query: 674  KIIYSGKVHSPKQTENIYEILLKQKHDSSSQIPGA---------DKWKAQ-PGVDNA-GG 528
            +II+S KV   +++E+IY++L   K +                  KW+   P   N   G
Sbjct: 1342 EIIFSQKVPQLQKSESIYKVLHNLKVEEPKPESAVACRASNRSNSKWRLNIPTFANGHAG 1401

Query: 527  SMRRW--NEHNCTTKKE---KNVVCSSQPASVRIGSWDNISAMSSSLSRMLHQYPVNHQL 363
               +W  N +   T+ E   K +   S+    ++GSW +I  M +SL  MLH+YP +  +
Sbjct: 1402 KKDKWKCNFNKGATQTEGRPKKLAVQSEFLMRKVGSWASIVDMCTSLRAMLHEYPYDGIV 1461

Query: 362  NEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFHPKSRCFILIRNDGTTEDFSYRKC 183
             E DKS LMEAL YHPK+D            GH P H  SRCFIL+R DGT +DFSYRKC
Sbjct: 1462 GEKDKSSLMEALKYHPKRDEKIGVGVQDIKIGHHPTHRCSRCFILVRKDGTMDDFSYRKC 1521

Query: 182  VIEAANQISPEFGLLVEKEL 123
            V+ AA  +S EFG +VEK+L
Sbjct: 1522 VVGAAKMLSTEFGSIVEKKL 1541


>gb|OAY84267.1| DNA-directed RNA polymerase IV subunit 1 [Ananas comosus]
          Length = 1556

 Score = 1351 bits (3497), Expect = 0.0
 Identities = 740/1535 (48%), Positives = 997/1535 (64%), Gaps = 32/1535 (2%)
 Frame = -1

Query: 4631 EKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEGHFGVIKLPTAIYHPYLIYE 4452
            EK S+ +I +A+DL ++KLG+PNA SQC TCGS ++  C+GHFG IKLP  IYHPY + E
Sbjct: 65   EKLSNASIVEANDLTNAKLGLPNALSQCATCGSKNLRGCDGHFGAIKLPAIIYHPYFVGE 124

Query: 4451 IVHILNQICPACKSXXXXXXXXXXXXK--TISSIRRLLLKMKFEKITMPQSQNLLSRVAN 4278
            IV ILNQICP C S               T   +   LL +K  +  +   Q  L ++  
Sbjct: 125  IVQILNQICPGCLSVKQDQEAKGSSMLEATEKFVESDLLILKALEKNLGGLQKKLLKICK 184

Query: 4277 AHV--KHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAE 4104
            + +    +   GS+ +   +  + + +  + N+   YP+++FK  S+D  GK+ ++I AE
Sbjct: 185  SKLLLSGILARGSKVRICYLKKRVKFRKSTPNNR--YPSVRFKISSKDMVGKRNLSIVAE 242

Query: 4103 FN--VPKKFENMSLSEVLPKDFWNFVPMLPSQHENSVSMDPNRITLSPVQAFYLLRELDK 3930
             N  +PKKF+N S+ EVLP+D+W+F+PM   Q +   S    RITLSP QAF+LL++LD 
Sbjct: 243  VNEKLPKKFQNKSMDEVLPQDYWDFIPMDQQQRQLKTS----RITLSPHQAFHLLKQLDP 298

Query: 3929 EFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTYSDGPRLS-HDKSTKAYRGVVDASKKI 3753
            EF++QFVPRREL+FLS +PV+ N  R +ET H ++DGP+LS  D+ TKAY+ VV+ S++I
Sbjct: 299  EFLKQFVPRRELLFLSSLPVTANSHRAMETSHPHADGPQLSFRDERTKAYKKVVEVSRRI 358

Query: 3752 DEFHKHQQFGFVAASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTG---LK 3582
            DEF +H QF   A+S +++R+H                      S  N +P S+G   LK
Sbjct: 359  DEFRQHPQFRAFASSYVSNRLHS---------------------STSNGEPISSGVSGLK 397

Query: 3581 WIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRL 3402
            W+KEV+LSKRSD  FR++M+GDPKI+L EIG+P  ++  L IS+HVN++N+EKL +SC L
Sbjct: 398  WLKEVILSKRSDYAFRLVMVGDPKIKLDEIGIPLSLAENLLISDHVNSYNLEKLNTSCNL 457

Query: 3401 HLISKPELKARRKGKLIFIHSSDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVK 3222
            HL++K EL ARR G+LI +   DQLQ+GD   R LE+GD+I++NR PSVH HSL+ALSVK
Sbjct: 458  HLLNKEELHARRDGQLISVRKPDQLQIGDIFYRPLENGDLILINRPPSVHQHSLIALSVK 517

Query: 3221 ILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVRARVXXXXXXXXXXXLFNVQDGRSL 3042
            +LP+  A+SINPLCCAPLLGDFDGDCLHG++PQS+ +RV           L N QDGRSL
Sbjct: 518  VLPIHFAISINPLCCAPLLGDFDGDCLHGYIPQSIPSRVELRELVGLDQQLLNSQDGRSL 577

Query: 3041 LSLTHDSLTAAHLLMEGEVFFSKFEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFS 2862
            +SL+HDSL AA+LL   +VF SK+EMQ LEML P    FP+IIK P    P WTG+QLF 
Sbjct: 578  VSLSHDSLVAAYLLTGTDVFLSKYEMQHLEMLCPSHMPFPSIIKYPNFGSPLWTGQQLFG 637

Query: 2861 MMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQ 2682
            M+LP  ++FS  S  + + +G+++ SP +SF  ++  S +FS MF+ YG +A ++L S Q
Sbjct: 638  MLLPPGIDFSVDSKKLHIIDGEVLSSPQMSFWLQSSTSSIFSTMFKSYGRRALDFLCSAQ 697

Query: 2681 EVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGII 2502
            E+LCEYLTMRGLSVSL D+YL SD Y+R K+ +EV+F L+EA+ +C   +L+L+P I  +
Sbjct: 698  ELLCEYLTMRGLSVSLSDLYLASDFYSRTKMTEEVNFGLDEAEDACRVKQLLLDPRIEFL 757

Query: 2501 IKAHDETEDLSHTLNISNFARERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMY 2322
            + + DE ED S++++  +F      I +ASIA FKD+F D+Q  V +Y+S +NS+ +M+ 
Sbjct: 758  LSSLDECEDSSYSVSHYHFLSNNLQIRKASIAAFKDVFSDIQRTVYHYVSKDNSMLSMIQ 817

Query: 2321 AGSKGSLAKXXXXXXXXXXXLSAKPLPFSIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEG 2142
            +GSKGSL+K           LSA   PF IP +LSC  WN+ KA +   G QD     E 
Sbjct: 818  SGSKGSLSKLAQQSLCLGLQLSASTFPFRIPQQLSCSWWNKQKALE--CGDQDAIRCEER 875

Query: 2141 ENSYAVIEASFLDGLSPLECFVHALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGT 1962
             N YAVI +SFL GL+PLECF+HA+S R+N F ENAE+PGTLTRK+ FY+RD+ VAYDGT
Sbjct: 876  RNFYAVIRSSFLQGLNPLECFLHAISGRANFFGENAEIPGTLTRKLSFYLRDLYVAYDGT 935

Query: 1961 VRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIGEDSACDRLG--GHPVGSLAACSISEAA 1788
            VR+AYGQQ+VQFSY   ++   ED  HS   I  D   ++    G PVGS AA SISEAA
Sbjct: 936  VRSAYGQQIVQFSYDISDEIFHEDA-HSRI-ISNDHIVEKYNGLGAPVGSWAASSISEAA 993

Query: 1787 YGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTASLALSNKLKRLNYGFEYGALAVKN 1608
            YG L+HPVNSLE SPL+ LK++LEC   RT  +    L LS  L+R  YGFEYGAL VKN
Sbjct: 994  YGGLEHPVNSLEDSPLMKLKEILECGKRRTYGDHAGILVLSKGLQRYRYGFEYGALEVKN 1053

Query: 1607 HLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALA 1428
            HL+   FS++V +VMI Y        +  ++SPW  HFH++KE + +KR+ VQ ++D L 
Sbjct: 1054 HLEITLFSEMVNTVMILYEC----PLQRRKISPWSTHFHISKETLKKKRLQVQRVIDKLM 1109

Query: 1427 GNYNCFRE--GRKLPRLFMTSQSCVLGNEQKNLEE-LCISVGAVESSERKEQDEPSPTLL 1257
             NY+  RE     LP L +T ++C L +E   L++ +CI+V A        +   S T L
Sbjct: 1110 ENYSLMREKSAGVLPALCITKKNCPLLDEHDELDQTVCIAVAA--------EVLDSVTQL 1161

Query: 1256 DTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPKPDG-QLFLKIIMEESCPPRKFWRTLQ 1080
            DTI+D V+ +LL TL+KGF   K V+I    Q +PD  +L LK+ M ESC   +FW TLQ
Sbjct: 1162 DTIKDVVILILLNTLVKGFLGIKHVEI----QCQPDSTELSLKVTMSESCSRGRFWSTLQ 1217

Query: 1079 SACLPIMDMIDWERSRLDGAHDISDVFGIISSYSYFLGSLKSAVSDIGRNIHLEHLLLVS 900
             AC+PIMD+IDW  S  +  +D   V+GI +++ YFL SLKSA S IGR+IH E L+ V+
Sbjct: 1218 DACIPIMDLIDWNSSHPESIYDTFTVYGIDAAWKYFLKSLKSATSGIGRHIHQEQLVTVA 1277

Query: 899  DSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFSNPEKCFIEAAKHSSTDHLYGTVDA 720
            D  SVTGEFHGLS KG+KQQR  LSISSPF+ ACFS+P   FI AAK  S D L G +DA
Sbjct: 1278 DCFSVTGEFHGLSTKGLKQQRNRLSISSPFSHACFSSPGNNFINAAKKGSVDELCGILDA 1337

Query: 719  VAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEILLKQKHDSSSQIPGA---------D 567
            V+WG+E PVGTGGPF+II+S KV   +++E+IY++L   K +                  
Sbjct: 1338 VSWGKEPPVGTGGPFEIIFSQKVPQLQKSESIYKVLHNLKVEEPKPESAVACRASNRSNS 1397

Query: 566  KWKAQ-PGVDNA-GGSMRRW--NEHNCTTKKE---KNVVCSSQPASVRIGSWDNISAMSS 408
            KW+   P   N   G   +W  N +   T+ E   K +   S+    ++GSW +I  M +
Sbjct: 1398 KWRLNIPTFANGHAGKKDKWKCNFNKGATQTEGRPKKLAVQSEFLMRKVGSWASIVDMCT 1457

Query: 407  SLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFHPKSRCFIL 228
            SL  MLH+YP +  + E DKS LMEAL YHPK+D            GH P H  SRCFIL
Sbjct: 1458 SLRAMLHEYPYDGIVGEKDKSSLMEALKYHPKRDEKIGVGVQDIKIGHHPTHRCSRCFIL 1517

Query: 227  IRNDGTTEDFSYRKCVIEAANQISPEFGLLVEKEL 123
            +R DGT +DFSYRKCV+ AA  +S EFG +VEK+L
Sbjct: 1518 VRKDGTMDDFSYRKCVVGAAKMLSTEFGSIVEKKL 1552


>ref|XP_020681065.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Dendrobium
            catenatum]
          Length = 1499

 Score = 1331 bits (3445), Expect = 0.0
 Identities = 734/1550 (47%), Positives = 1002/1550 (64%), Gaps = 15/1550 (0%)
 Frame = -1

Query: 4718 MADDSITDKMVPSAQLLGLKFDLLTGDDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 4539
            MA      ++ PSA+L G+KF+L+TG+++E FS V+I + +DLV +KLG+P+  SQC+ C
Sbjct: 1    MASGPTICQITPSARLSGIKFELMTGEEMELFSSVSILEVNDLVDAKLGLPSTSSQCSAC 60

Query: 4538 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISS 4359
            GST++ DC+GHFGVIKLP ++YHPY + EIVHILNQICP CKS              I S
Sbjct: 61   GSTNVKDCDGHFGVIKLPISVYHPYFLPEIVHILNQICPGCKSFRHESRIKRRL---IHS 117

Query: 4358 IRRLLLK---MKFEKITMPQSQNLLSRVANAHVKHLKFSGS-EKKWGTVDNQAECKHCSR 4191
            +R+ LL+   ++  ++T    + +LS      + +LK      K+ G +   + CK+C+ 
Sbjct: 118  VRKKLLRYIRLRLSRLT----RKVLSGDLKDDISYLKIRKHIYKEVGAIGKNSGCKYCAS 173

Query: 4190 NSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEVLPKDFWNFVPMLPS 4017
            +S EWYP +KFK  +RD  G+K ++I AE N  +PKKF+N S  E+LPKD+WNFVP    
Sbjct: 174  SSFEWYPTLKFKISNRDVQGRKGLSILAEVNEKLPKKFQNRSFGELLPKDYWNFVPNYHK 233

Query: 4016 QHENSVSMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETI 3837
            Q      ++ N I LSP Q F LL++LD +FI QFV RREL+FLSC+PV+PN  R+VET 
Sbjct: 234  QQ----GLNSNSIFLSPWQVFCLLKQLDLDFINQFVSRRELLFLSCLPVTPNSHRIVETT 289

Query: 3836 HTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDCLNVSKLHS 3657
            H +SDG R+S D+ TK Y+ +VD  KK+D   +H Q   + +S I  RV +C   SKL S
Sbjct: 290  HAFSDGSRISFDERTKIYKRMVDLGKKLDGVLQHPQLRALTSSFITDRVRECFVSSKLRS 349

Query: 3656 NKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPRD 3477
            +K  +GD S   S         G+KW+KEVVLSKR+D+ FRM M+GDPK++L E+G+P D
Sbjct: 350  HKLLSGDSSSNIS---------GMKWLKEVVLSKRTDHAFRMTMVGDPKVRLDEVGIPYD 400

Query: 3476 VSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKLIFIHSSDQLQVGDTLNRSL 3297
            ++R+L+++E+V+  N+E L++S  +HL         R  KLIF H SD L +GD + R L
Sbjct: 401  IARSLFVTEYVSKFNLETLRASQGIHLW--------RDQKLIFNHKSD-LHIGDRIERPL 451

Query: 3296 EDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSV 3117
             DGDI++VNR PSVH HSL+ALS KILP++S VSINPLCC+PLLGDFDGDCLHG+VPQS+
Sbjct: 452  ADGDIVLVNRPPSVHQHSLIALSAKILPIDSVVSINPLCCSPLLGDFDGDCLHGYVPQSI 511

Query: 3116 RARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEMLFPC 2937
              RV           L N  DGR+LLSLTHDSLTAA+LL   E F +KFE+QQLEM    
Sbjct: 512  HCRVELQELVSLDCQLLNGLDGRNLLSLTHDSLTAAYLLTAKEAFLNKFEIQQLEMFCHH 571

Query: 2936 KSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRN 2757
            +S  PAII  P ++ P WTG+QL SM+ P  ++    S  +    G+L+  P      +N
Sbjct: 572  QSPVPAIITGPNLESPLWTGQQLLSMLFPPLVDLYEASRTLHHFKGELLFDPQFLSWLQN 631

Query: 2756 FISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEV 2577
              + +F  M   YG KA +YLFS QEVLCEYLTMRGL+VSL D+YLTSD YTR K+ DEV
Sbjct: 632  KPNSIFYWMSTNYGEKALDYLFSAQEVLCEYLTMRGLTVSLGDVYLTSDSYTRTKMTDEV 691

Query: 2576 SFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARERRPISQASIAKFK 2397
            +F L+EA  +C   E +L  +    + A D+   LS  L +         I Q SI  FK
Sbjct: 692  NFGLQEAADACRATERLLN-KFDSSVNAIDDAAGLSLPLRLQKLTCSITRIIQESITAFK 750

Query: 2396 DLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKPLPFSIPLKLS 2217
            ++F D+Q  +  YI S NS+  M+ AGSKGSL K            SA  +PF+IP  LS
Sbjct: 751  NIFSDIQYAILSYIGSNNSMLAMINAGSKGSLLKLVQQGACLGMQFSANEIPFNIPSVLS 810

Query: 2216 CPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFSEN 2037
            C +WNQ K F ++  + D +N  + +  +AVI+AS LDGL+PLECF H+LS R+N+FSEN
Sbjct: 811  CEQWNQQKKFHQNRVLDD-ANGEDVQKHFAVIKASLLDGLNPLECFFHSLSGRANLFSEN 869

Query: 2036 AELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEK-KSCEDCDHSHFSIGE 1860
            A+LPGTL+RK+MFYMRD+ VAYDG+VRN YG+++VQF Y  PEK K C        S  +
Sbjct: 870  AQLPGTLSRKLMFYMRDLYVAYDGSVRNVYGEEIVQFCYNFPEKGKFC------RVSSEK 923

Query: 1859 DSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTA 1680
            +++    GG PVGS A+CS++E AYGAL+ PVN L  SPLLNLK +LE +   TS   TA
Sbjct: 924  EASTSIPGGQPVGSWASCSLTETAYGALECPVNPLCPSPLLNLKALLETSTGTTSGVHTA 983

Query: 1679 SLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVL 1500
            SL LSNKL+RL YGFE+GAL VK+ L+ + F++IVT++ IFY   +A     + LSPWV+
Sbjct: 984  SLFLSNKLRRLRYGFEHGALEVKSQLEMILFAEIVTTIKIFYVRKEA---HRIGLSPWVI 1040

Query: 1499 HFHVNKEMILRKRINVQSIVDALAGNYNCFRE-GRKLPRLFMTSQSCVLGNEQKNLEEL- 1326
            HF+++KE +   R+++ ++ D L  +Y         LP+LF+ S+  +  ++ +    + 
Sbjct: 1041 HFYIDKERMSSTRLDMHAVKDQLLRSYEQRAALDDSLPKLFLESKYYLPDDKHEKPGAMN 1100

Query: 1325 CISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILW-DSQPKPD 1149
            CI+V AVE ++       S  LLD +RD V+P LL++LIKGF E ++VDILW D+Q   +
Sbjct: 1101 CITV-AVEFTD-------SHILLDILRDLVIPCLLKSLIKGFSEIRKVDILWDDAQKNSN 1152

Query: 1148 GQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRLDGAHDISDVFGIISSYSYFL 969
            G+LFLK+ M E+C   KFW ++Q+ACLPIMD+IDW RS  +   +IS +FGI +S+ +FL
Sbjct: 1153 GELFLKVTMSENCSLGKFWSSIQNACLPIMDLIDWNRSHPNDICNISSMFGISASWLFFL 1212

Query: 968  GSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFSN 789
             SLKS   D+GR++  EHL +V+D L ++GEFHGL+ KG+K QR + + SSPFT ACFSN
Sbjct: 1213 RSLKSTALDVGRSVRQEHLNIVADRLFISGEFHGLNKKGLKVQRDYTTTSSPFTFACFSN 1272

Query: 788  PEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEILL 609
            P  CFI+AAK    D L GT+ A++WG+E+P GTGGPFKIIYSGKV +PK+ E+IY +L 
Sbjct: 1273 PASCFIDAAKQDYEDSLRGTIGAISWGKESPTGTGGPFKIIYSGKVCNPKEGESIYSMLQ 1332

Query: 608  KQKHDSSSQIPGADKWKAQPGVDNAGG---SMRRWNEHNCTTKKEKNVVCSSQPASV--R 444
             Q           D  + + G     G   S + W++ NC T+ E +   + Q   +  R
Sbjct: 1333 CQ-----------DIIRKKMGKPLHVGDICSSKNWDQ-NCCTQYEGHTDFAFQRKFLAHR 1380

Query: 443  IGSWDNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGH 264
             GS+ +I  M S+L  +L +YP+N  +  AD+ +LM+AL  HP  DA           G+
Sbjct: 1381 NGSYTHIINMESTLRAILLKYPINRYVTAADREILMKALARHPSSDAKIGTGVQDIKVGY 1440

Query: 263  SPFHPKSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEKELDSR 114
            S  H  S+CFIL+R DGTTEDFSY KCV  AA Q+SPE   + EK+   R
Sbjct: 1441 SSEHKGSKCFILVRKDGTTEDFSYHKCVAGAAAQVSPECAAIFEKKHQRR 1490


>ref|XP_020572386.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Phalaenopsis
            equestris]
 ref|XP_020572387.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Phalaenopsis
            equestris]
 ref|XP_020572388.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Phalaenopsis
            equestris]
          Length = 1503

 Score = 1320 bits (3416), Expect = 0.0
 Identities = 722/1550 (46%), Positives = 992/1550 (64%), Gaps = 13/1550 (0%)
 Frame = -1

Query: 4724 PIMADDSITDKMVPSAQLLGLKFDLLTGDDIEKFSHVNINDASDLVSSKLGVPNACSQCT 4545
            PIMAD     + +PSA+L G+KF+L+TG+++E+FS V+I D +DLV +KLG+P+  SQC+
Sbjct: 2    PIMADCPTVFETIPSARLNGIKFELMTGEEMERFSSVSILDVNDLVDAKLGLPSTSSQCS 61

Query: 4544 TCGSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTI 4365
            TCGS  + DC+GHFGVIKLP ++YHPY + EIVHILNQICP CKS             T+
Sbjct: 62   TCGSKSVKDCDGHFGVIKLPISVYHPYFLPEIVHILNQICPGCKSVRHESQIKRRLFHTV 121

Query: 4364 SSIRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGS-EKKWGTVDNQAECKHCSRN 4188
                   +++   ++T    + +LS      + +LK      K+ GT+ N++ CK+C+ +
Sbjct: 122  RKKLLRYIRLSLSRLT----RKVLSGDLKDDISYLKIRKHISKEVGTIGNKSGCKYCASS 177

Query: 4187 SEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEVLPKDFWNFVPMLPSQ 4014
            S EWYP +KFK  ++D  G+K ++I AE N  +PKKF+N S  E+LPKDFWNFVP    Q
Sbjct: 178  SFEWYPTLKFKISNKDFQGRKGLSILAEVNAKLPKKFQNRSFGELLPKDFWNFVPKYHKQ 237

Query: 4013 HENSVSMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIH 3834
                  ++ N I LSP Q F LL++LD++FI QFV RREL+FLSC+PV+PN  R+VE  H
Sbjct: 238  Q----CLNSNSIFLSPWQVFSLLKQLDRDFINQFVSRRELLFLSCLPVTPNSHRIVEVTH 293

Query: 3833 TYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDCLNVSKLHSN 3654
              +DG R+S D  TK Y+ + D  KK+D   +H QF  + +S I  RV +C   SKL S 
Sbjct: 294  ALTDGSRISFDDRTKIYKRMADLGKKLDGVLQHPQFRALTSSFITDRVRECFVSSKLRSR 353

Query: 3653 KASTGDHSKYYSKQNDQPSS-TGLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPRD 3477
               +GD           PSS +G+KW+KEVVLSKR+D  FRM M+GDPK++L E+G+P D
Sbjct: 354  ALLSGD----------SPSSVSGMKWLKEVVLSKRTDYAFRMTMVGDPKLRLDEVGIPSD 403

Query: 3476 VSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKLIFIHSSDQLQVGDTLNRSL 3297
            ++R+L+++E V   N+EKL++S R+ L         +  +LIF H S++LQ+GD + R L
Sbjct: 404  IARSLFVTEFVTKFNLEKLRTSQRIRLW--------KDQRLIFNHKSNELQLGDRIERPL 455

Query: 3296 EDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSV 3117
             DGD+++VNR PSVH HSL+ALSV+ILP +S VSINPL C+PLLGDFDGDCLHG+VPQS+
Sbjct: 456  ADGDVVLVNRPPSVHQHSLIALSVRILPTDSVVSINPLICSPLLGDFDGDCLHGYVPQSI 515

Query: 3116 RARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEMLFPC 2937
              R+           L N  DGR+LLSLTHDSLTAA+ L   + F +KFE+QQLEML   
Sbjct: 516  HCRIELQELVSLDSQLLNGLDGRNLLSLTHDSLTAAYFLTSKDAFLNKFEIQQLEMLCHH 575

Query: 2936 KSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRN 2757
            +S  PAI+  P  +   WTG QL +M+ P  ++    S  +    G+L+  P      +N
Sbjct: 576  QSPVPAIVTGPNPKSALWTGHQLLNMLFPPLVDLYESSRTLRHFKGELLFEPQFLCWLQN 635

Query: 2756 FISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEV 2577
              + ++  M   YG KA +YLFS QEVLCEYLTMRG +VSL D+YLT+D YTR K+IDEV
Sbjct: 636  KPNSIYYWMSTNYGKKALDYLFSAQEVLCEYLTMRGFTVSLGDIYLTTDSYTRMKMIDEV 695

Query: 2576 SFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARERRPISQASIAKFK 2397
            +F L+EA  SC   E  L    G  + + D+ ED   +L +      R  + Q SIA FK
Sbjct: 696  NFGLQEAADSCRAREHFLNKFDG-SLNSIDDVEDTFLSLKLQKLKSSRTRLIQESIAAFK 754

Query: 2396 DLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKPLPFSIPLKLS 2217
            ++F D+Q  +  Y+ + +S+  M+ AGSKGSL K            SA  +PF+IP  LS
Sbjct: 755  NIFCDIQYAILNYVGNNSSMLAMINAGSKGSLLKLVQQGACLGMQFSASEIPFNIPRVLS 814

Query: 2216 CPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFSEN 2037
            C  WNQ K   +   + D    S  +  +AVI++S LDGL+PLECF HALS R+N+FSEN
Sbjct: 815  CEHWNQQKKLHQHRVLDDAEGGSI-QKHFAVIKSSLLDGLNPLECFFHALSGRANLFSEN 873

Query: 2036 AELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEK-KSCEDCDHSHFSIGE 1860
            A+LPGTL+RK+MFYMRD+ VAYDG+VRN YG+++VQF Y  PE  K C+       S   
Sbjct: 874  AQLPGTLSRKLMFYMRDLYVAYDGSVRNVYGEEIVQFCYNFPENGKFCK------ISSER 927

Query: 1859 DSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTA 1680
            + +    GG PVGS+A+CS+SE AYGAL+ PVN    SPLLN K +LE +    S   TA
Sbjct: 928  EVSRSVPGGQPVGSMASCSLSETAYGALECPVNPFCPSPLLNFKALLERSTGTISGVHTA 987

Query: 1679 SLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVL 1500
            SL LSNKL+RL YGFE+ AL VK+ L  V F++IV ++ I Y+  D   T+ + LSPWV+
Sbjct: 988  SLFLSNKLRRLRYGFEHAALVVKSQLGHVLFAEIVRTITILYARKD---TQRVGLSPWVI 1044

Query: 1499 HFHVNKEMILRKRINVQSIVDALAGNYNCFRE-GRKLPRLFMTSQSCVLGNEQKNLEEL- 1326
            HF+V+KE +  +R+  Q++ D L  +Y         LP+LF+ S+  +  ++Q+    + 
Sbjct: 1045 HFYVDKESMSSRRLEAQNVKDQLVRSYEKKAALNDSLPKLFIESKYHLPDDKQEKSGAMN 1104

Query: 1325 CISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILW-DSQPKPD 1149
            CI++ AVE ++       SP LLDT+R  V+P LL++LIKGF EF++VDILW D+Q   +
Sbjct: 1105 CITL-AVEFAD-------SPILLDTLRHLVLPCLLKSLIKGFSEFEKVDILWDDTQKNSN 1156

Query: 1148 GQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRLDGAHDISDVFGIISSYSYFL 969
            G+LFLK+ M E+C P KFW ++Q+AC+PIMD+IDW RS  +   +IS +FGI +++  FL
Sbjct: 1157 GELFLKVTMSETCSPGKFWNSIQNACVPIMDLIDWNRSHPNDICNISSMFGISAAWIIFL 1216

Query: 968  GSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFSN 789
             SLKS   D+GRN+  EHL +V+D L  +GEF+GLS KG+K Q+   + SSPFT ACFSN
Sbjct: 1217 RSLKSTALDVGRNVRQEHLKIVADRLFFSGEFYGLSKKGLKMQKDFTANSSPFTFACFSN 1276

Query: 788  PEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEILL 609
            P  CF++AAK   TD L+GT+DA++WG+E+P+GTGGPFKI+YSGKV +PK+   IY +L 
Sbjct: 1277 PASCFVDAAKQDCTDSLHGTIDAISWGKESPIGTGGPFKIMYSGKVSNPKEGVGIYSMLQ 1336

Query: 608  KQKHDSSSQIPGADKWKAQPGVDNAGGSM---RRWNEHNCTTKKEKNVVCSSQP--ASVR 444
             Q           DK   +P   +AG  +   ++W+E NC T+ E +   + Q    + +
Sbjct: 1337 CQDI--------IDKRMEEP--LHAGDDICKSKKWDE-NCCTEYEGHTDFAFQKGLGARQ 1385

Query: 443  IGSWDNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGH 264
             GS+ +I  M  SL  +L +YP+N  +  AD+ +LM+AL  HP  DA           G+
Sbjct: 1386 NGSYSHIVNMEFSLRAILLKYPINRYVTAADREILMKALARHPSCDAKIGSGVQDIMVGY 1445

Query: 263  SPFHPKSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEKELDSR 114
            S  H  S+CFIL+R DGTTEDFSY KCV  AA QISPE   + EK    R
Sbjct: 1446 SSEHKGSKCFILVRKDGTTEDFSYHKCVAGAAAQISPECAAMFEKRYHRR 1495


>ref|XP_021318618.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Sorghum bicolor]
          Length = 1449

 Score = 1263 bits (3269), Expect = 0.0
 Identities = 692/1540 (44%), Positives = 955/1540 (62%), Gaps = 20/1540 (1%)
 Frame = -1

Query: 4688 VPSAQLLGLKFDLLTGDDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEG 4509
            +P A L  +KFDL+T  D+EK S +++ + SD+ S KLG+PNA  QC TCGS    DC+G
Sbjct: 13   LPEATLNAIKFDLMTSTDMEKLSSMSVIEVSDVTSPKLGLPNASPQCETCGSKSGRDCDG 72

Query: 4508 HFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISSIRRLLLKMKF 4329
            HFGV KL   +++PY I ++VH LNQICP C S                           
Sbjct: 73   HFGVTKLAATVHNPYFIDDVVHFLNQICPGCLSPR------------------------- 107

Query: 4328 EKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTL 4149
            E I M                  K  G E    TV   + CK+CS++  + YP++ FKTL
Sbjct: 108  EGINM------------------KRLGRE----TVQATSTCKYCSKDGSKLYPSVIFKTL 145

Query: 4148 S------------RDTNGKKCVAITAEF--NVPKKFENMSLSEVLPKDFWNFVPMLPSQH 4011
            S            R  +  + ++I AE    V  + +   L E LP+D+W+FVP    Q 
Sbjct: 146  SSPRVLLSKSKLHRSPSVMERISIVAEAAERVSNRSKGKGLLEGLPQDYWDFVPSENKQV 205

Query: 4010 ENSVSMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHT 3831
            +++++    +I LSP Q F++L++ D E I+QFV RREL+FLSC+PV+PNC RVVE  + 
Sbjct: 206  QSNMT----KIILSPYQVFHMLKKSDPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYG 261

Query: 3830 YSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDCLNVSKLHSNK 3651
             SDG R++ D  TKAY+ +VD S++ID++ +H QF  +A+SL++ RV +CL  SKL    
Sbjct: 262  LSDG-RVTFDDRTKAYKRMVDVSRRIDDYRQHPQFSVLASSLVSGRVSECLKSSKL---- 316

Query: 3650 ASTGDHSKYYSKQNDQPSST---GLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPR 3480
                     YSK+ D  +ST   G+KW+K+ VLSKRSDN FR  M+GDPKI+L EIG+P 
Sbjct: 317  ---------YSKKTDGETSTDPSGMKWLKDAVLSKRSDNAFRSTMVGDPKIKLWEIGIPE 367

Query: 3479 DVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKLIFIHSSDQLQVGDTLNRS 3300
            D++  L +S+HVN++N E +   C LHL++K EL  RR GKL+F+  +DQL++GD   R 
Sbjct: 368  DLASNLVVSDHVNSYNFENINLKCNLHLLTKEELFIRRNGKLMFLRKADQLEIGDIAYRP 427

Query: 3299 LEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQS 3120
            L+DGD+I++NR PSVH HSL+A S KILP+ S VSINPLCC P LGDFDGDCLHG++PQS
Sbjct: 428  LQDGDLILINRPPSVHQHSLIAFSAKILPIHSVVSINPLCCTPFLGDFDGDCLHGYIPQS 487

Query: 3119 VRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEML-F 2943
            VR+R+           L N+QDGRSL+SLTHDSL AAHLL   +VF  K E QQL+ML  
Sbjct: 488  VRSRIELGELVSLHHQLLNMQDGRSLVSLTHDSLAAAHLLTSTDVFLKKSEFQQLQMLCL 547

Query: 2942 PCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSS 2763
               +  PA+IK+   Q  RWTG+QLFSM+LP  M+FS    ++ + NG+++     S   
Sbjct: 548  SVLTPVPAVIKSMNFQGSRWTGKQLFSMLLPSGMKFSC-DRMLHILNGEVLTCSLGSSWL 606

Query: 2762 RNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLID 2583
            +N  SGLFS MF+ YG KA ++L S QEVLCE+LTMRGLSVSL DM+  SD Y+R KL +
Sbjct: 607  QNNTSGLFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDMF--SDHYSRRKLTE 664

Query: 2582 EVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARERRPISQASIAK 2403
             V  AL+EA+ +    +++L+P    ++K  DETED+  T   S+  +    + ++SI  
Sbjct: 665  GVKLALDEAEEAFRIKQILLDPINIPVLKCQDETEDV--TYRQSDCIQNNPSVIRSSIMA 722

Query: 2402 FKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKPLPFSIPLK 2223
            FKD+F DL  +V  ++S++NS+  M+ AGSKGS+ K           L A   PF +P +
Sbjct: 723  FKDVFSDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACVGLQLPASKFPFRVPSQ 782

Query: 2222 LSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFS 2043
            LSC  WN+ K+ +     + T+    G+N YAVI  SF++GL+PLEC +HA+S R+N FS
Sbjct: 783  LSCIRWNRQKSLNYE--AEGTNERVGGQNLYAVIRNSFIEGLNPLECLLHAISGRANFFS 840

Query: 2042 ENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIG 1863
            ENA++PGTLTRK+M+++RDI VAYDGTVR++YGQQ+VQFSY S                 
Sbjct: 841  ENADVPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYDS----------------- 883

Query: 1862 EDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRT 1683
             D   D+LG  PVG  AACSISEAAYGAL+HPVN LE SPL+NL++V +C     S +  
Sbjct: 884  ADDPVDKLGA-PVGCWAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHI 942

Query: 1682 ASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWV 1503
              L LS  LK+  YG EY +L VKNHL++V FSD+V ++MI Y  HD    +G     W 
Sbjct: 943  GLLFLSRHLKKYRYGLEYASLEVKNHLEQVNFSDLVETIMIIYDGHDKIRKEG----TWT 998

Query: 1502 LHFHVNKEMILRKRINVQSIVDALAGNYNCFREGRK--LPRLFMTSQSCVLGNEQKNLEE 1329
             HFH++KEM+ +KR+ ++ +++ L   YN  R+  K  +P + ++ + CV+G+E   +  
Sbjct: 999  THFHISKEMMKKKRLGLRFVIEELTKEYNATRDQLKNAIPSICISRRKCVVGDEGVKISA 1058

Query: 1328 LCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPKPD 1149
             CI+V A+       Q       LDTI+  V+P++L TL+KGF EFK V+I    Q + D
Sbjct: 1059 CCIAVVALAEPNSMSQ-------LDTIKKRVIPIILDTLLKGFLEFKDVEI----QCQHD 1107

Query: 1148 GQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRLDGAHDISDVFGIISSYSYFL 969
            G+L +K+ M   C   +FW TLQ+AC+P+M++IDWE SR     DI   +GI S++ YF+
Sbjct: 1108 GELLVKVCMSHHCKGGRFWATLQNACIPVMELIDWELSRPSNVADIFCSYGIDSAWKYFV 1167

Query: 968  GSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFSN 789
             SLKSA +DIGRNI  EHLL+++DS+SVTG+FH +S+ G+KQQR  LSISSPF++ACFS 
Sbjct: 1168 ESLKSATTDIGRNIRREHLLVIADSMSVTGQFHAISSHGLKQQRTRLSISSPFSEACFSR 1227

Query: 788  PEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEILL 609
            P + FI+AAK  S D+L G++DA+AWG+E   GT GPF+I++SGK H P+Q E+IY+ L 
Sbjct: 1228 PAQSFIDAAKQCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHSGKPHEPEQDESIYDFLR 1287

Query: 608  KQKHDSSSQIPGADKWKAQPGVDNAGGSMRRWNEHNCTTKKEKNVVCSSQPASVRIGSWD 429
              K      +        +   +NA             T     +         ++  WD
Sbjct: 1288 SPK---VQNVEKNHLDTRRQSTENASICRLACKSKGSATVNGVAITSDQDFLHAKVSIWD 1344

Query: 428  NISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFHP 249
            NI  M +SL  ML +YP+N  + E DKS L+EAL +HP+              G +P HP
Sbjct: 1345 NIIDMRASLQNMLREYPLNGYVMEPDKSKLIEALKFHPRGAEKIGVGVREIKVGLNPNHP 1404

Query: 248  KSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEK 129
             +RCFIL+RND TTEDFSY KCV  AAN ISP+ G  ++K
Sbjct: 1405 GTRCFILLRNDDTTEDFSYHKCVHGAANSISPQLGSYLKK 1444


>gb|OQU82183.1| hypothetical protein SORBI_3006G185200 [Sorghum bicolor]
          Length = 1484

 Score = 1263 bits (3269), Expect = 0.0
 Identities = 692/1540 (44%), Positives = 955/1540 (62%), Gaps = 20/1540 (1%)
 Frame = -1

Query: 4688 VPSAQLLGLKFDLLTGDDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEG 4509
            +P A L  +KFDL+T  D+EK S +++ + SD+ S KLG+PNA  QC TCGS    DC+G
Sbjct: 48   LPEATLNAIKFDLMTSTDMEKLSSMSVIEVSDVTSPKLGLPNASPQCETCGSKSGRDCDG 107

Query: 4508 HFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISSIRRLLLKMKF 4329
            HFGV KL   +++PY I ++VH LNQICP C S                           
Sbjct: 108  HFGVTKLAATVHNPYFIDDVVHFLNQICPGCLSPR------------------------- 142

Query: 4328 EKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTL 4149
            E I M                  K  G E    TV   + CK+CS++  + YP++ FKTL
Sbjct: 143  EGINM------------------KRLGRE----TVQATSTCKYCSKDGSKLYPSVIFKTL 180

Query: 4148 S------------RDTNGKKCVAITAEF--NVPKKFENMSLSEVLPKDFWNFVPMLPSQH 4011
            S            R  +  + ++I AE    V  + +   L E LP+D+W+FVP    Q 
Sbjct: 181  SSPRVLLSKSKLHRSPSVMERISIVAEAAERVSNRSKGKGLLEGLPQDYWDFVPSENKQV 240

Query: 4010 ENSVSMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHT 3831
            +++++    +I LSP Q F++L++ D E I+QFV RREL+FLSC+PV+PNC RVVE  + 
Sbjct: 241  QSNMT----KIILSPYQVFHMLKKSDPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYG 296

Query: 3830 YSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDCLNVSKLHSNK 3651
             SDG R++ D  TKAY+ +VD S++ID++ +H QF  +A+SL++ RV +CL  SKL    
Sbjct: 297  LSDG-RVTFDDRTKAYKRMVDVSRRIDDYRQHPQFSVLASSLVSGRVSECLKSSKL---- 351

Query: 3650 ASTGDHSKYYSKQNDQPSST---GLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPR 3480
                     YSK+ D  +ST   G+KW+K+ VLSKRSDN FR  M+GDPKI+L EIG+P 
Sbjct: 352  ---------YSKKTDGETSTDPSGMKWLKDAVLSKRSDNAFRSTMVGDPKIKLWEIGIPE 402

Query: 3479 DVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKLIFIHSSDQLQVGDTLNRS 3300
            D++  L +S+HVN++N E +   C LHL++K EL  RR GKL+F+  +DQL++GD   R 
Sbjct: 403  DLASNLVVSDHVNSYNFENINLKCNLHLLTKEELFIRRNGKLMFLRKADQLEIGDIAYRP 462

Query: 3299 LEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQS 3120
            L+DGD+I++NR PSVH HSL+A S KILP+ S VSINPLCC P LGDFDGDCLHG++PQS
Sbjct: 463  LQDGDLILINRPPSVHQHSLIAFSAKILPIHSVVSINPLCCTPFLGDFDGDCLHGYIPQS 522

Query: 3119 VRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEML-F 2943
            VR+R+           L N+QDGRSL+SLTHDSL AAHLL   +VF  K E QQL+ML  
Sbjct: 523  VRSRIELGELVSLHHQLLNMQDGRSLVSLTHDSLAAAHLLTSTDVFLKKSEFQQLQMLCL 582

Query: 2942 PCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSS 2763
               +  PA+IK+   Q  RWTG+QLFSM+LP  M+FS    ++ + NG+++     S   
Sbjct: 583  SVLTPVPAVIKSMNFQGSRWTGKQLFSMLLPSGMKFSC-DRMLHILNGEVLTCSLGSSWL 641

Query: 2762 RNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLID 2583
            +N  SGLFS MF+ YG KA ++L S QEVLCE+LTMRGLSVSL DM+  SD Y+R KL +
Sbjct: 642  QNNTSGLFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDMF--SDHYSRRKLTE 699

Query: 2582 EVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARERRPISQASIAK 2403
             V  AL+EA+ +    +++L+P    ++K  DETED+  T   S+  +    + ++SI  
Sbjct: 700  GVKLALDEAEEAFRIKQILLDPINIPVLKCQDETEDV--TYRQSDCIQNNPSVIRSSIMA 757

Query: 2402 FKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKPLPFSIPLK 2223
            FKD+F DL  +V  ++S++NS+  M+ AGSKGS+ K           L A   PF +P +
Sbjct: 758  FKDVFSDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACVGLQLPASKFPFRVPSQ 817

Query: 2222 LSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFS 2043
            LSC  WN+ K+ +     + T+    G+N YAVI  SF++GL+PLEC +HA+S R+N FS
Sbjct: 818  LSCIRWNRQKSLNYE--AEGTNERVGGQNLYAVIRNSFIEGLNPLECLLHAISGRANFFS 875

Query: 2042 ENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIG 1863
            ENA++PGTLTRK+M+++RDI VAYDGTVR++YGQQ+VQFSY S                 
Sbjct: 876  ENADVPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYDS----------------- 918

Query: 1862 EDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRT 1683
             D   D+LG  PVG  AACSISEAAYGAL+HPVN LE SPL+NL++V +C     S +  
Sbjct: 919  ADDPVDKLGA-PVGCWAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHI 977

Query: 1682 ASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWV 1503
              L LS  LK+  YG EY +L VKNHL++V FSD+V ++MI Y  HD    +G     W 
Sbjct: 978  GLLFLSRHLKKYRYGLEYASLEVKNHLEQVNFSDLVETIMIIYDGHDKIRKEG----TWT 1033

Query: 1502 LHFHVNKEMILRKRINVQSIVDALAGNYNCFREGRK--LPRLFMTSQSCVLGNEQKNLEE 1329
             HFH++KEM+ +KR+ ++ +++ L   YN  R+  K  +P + ++ + CV+G+E   +  
Sbjct: 1034 THFHISKEMMKKKRLGLRFVIEELTKEYNATRDQLKNAIPSICISRRKCVVGDEGVKISA 1093

Query: 1328 LCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPKPD 1149
             CI+V A+       Q       LDTI+  V+P++L TL+KGF EFK V+I    Q + D
Sbjct: 1094 CCIAVVALAEPNSMSQ-------LDTIKKRVIPIILDTLLKGFLEFKDVEI----QCQHD 1142

Query: 1148 GQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRLDGAHDISDVFGIISSYSYFL 969
            G+L +K+ M   C   +FW TLQ+AC+P+M++IDWE SR     DI   +GI S++ YF+
Sbjct: 1143 GELLVKVCMSHHCKGGRFWATLQNACIPVMELIDWELSRPSNVADIFCSYGIDSAWKYFV 1202

Query: 968  GSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFSN 789
             SLKSA +DIGRNI  EHLL+++DS+SVTG+FH +S+ G+KQQR  LSISSPF++ACFS 
Sbjct: 1203 ESLKSATTDIGRNIRREHLLVIADSMSVTGQFHAISSHGLKQQRTRLSISSPFSEACFSR 1262

Query: 788  PEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEILL 609
            P + FI+AAK  S D+L G++DA+AWG+E   GT GPF+I++SGK H P+Q E+IY+ L 
Sbjct: 1263 PAQSFIDAAKQCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHSGKPHEPEQDESIYDFLR 1322

Query: 608  KQKHDSSSQIPGADKWKAQPGVDNAGGSMRRWNEHNCTTKKEKNVVCSSQPASVRIGSWD 429
              K      +        +   +NA             T     +         ++  WD
Sbjct: 1323 SPK---VQNVEKNHLDTRRQSTENASICRLACKSKGSATVNGVAITSDQDFLHAKVSIWD 1379

Query: 428  NISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFHP 249
            NI  M +SL  ML +YP+N  + E DKS L+EAL +HP+              G +P HP
Sbjct: 1380 NIIDMRASLQNMLREYPLNGYVMEPDKSKLIEALKFHPRGAEKIGVGVREIKVGLNPNHP 1439

Query: 248  KSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEK 129
             +RCFIL+RND TTEDFSY KCV  AAN ISP+ G  ++K
Sbjct: 1440 GTRCFILLRNDDTTEDFSYHKCVHGAANSISPQLGSYLKK 1479


>ref|XP_021318619.1| DNA-directed RNA polymerase IV subunit 1 isoform X2 [Sorghum bicolor]
 ref|XP_021318620.1| DNA-directed RNA polymerase IV subunit 1 isoform X2 [Sorghum bicolor]
 gb|KXG26949.1| hypothetical protein SORBI_3006G185200 [Sorghum bicolor]
 gb|KXG26950.1| hypothetical protein SORBI_3006G185200 [Sorghum bicolor]
          Length = 1443

 Score = 1263 bits (3269), Expect = 0.0
 Identities = 692/1540 (44%), Positives = 955/1540 (62%), Gaps = 20/1540 (1%)
 Frame = -1

Query: 4688 VPSAQLLGLKFDLLTGDDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEG 4509
            +P A L  +KFDL+T  D+EK S +++ + SD+ S KLG+PNA  QC TCGS    DC+G
Sbjct: 7    LPEATLNAIKFDLMTSTDMEKLSSMSVIEVSDVTSPKLGLPNASPQCETCGSKSGRDCDG 66

Query: 4508 HFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISSIRRLLLKMKF 4329
            HFGV KL   +++PY I ++VH LNQICP C S                           
Sbjct: 67   HFGVTKLAATVHNPYFIDDVVHFLNQICPGCLSPR------------------------- 101

Query: 4328 EKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTL 4149
            E I M                  K  G E    TV   + CK+CS++  + YP++ FKTL
Sbjct: 102  EGINM------------------KRLGRE----TVQATSTCKYCSKDGSKLYPSVIFKTL 139

Query: 4148 S------------RDTNGKKCVAITAEF--NVPKKFENMSLSEVLPKDFWNFVPMLPSQH 4011
            S            R  +  + ++I AE    V  + +   L E LP+D+W+FVP    Q 
Sbjct: 140  SSPRVLLSKSKLHRSPSVMERISIVAEAAERVSNRSKGKGLLEGLPQDYWDFVPSENKQV 199

Query: 4010 ENSVSMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHT 3831
            +++++    +I LSP Q F++L++ D E I+QFV RREL+FLSC+PV+PNC RVVE  + 
Sbjct: 200  QSNMT----KIILSPYQVFHMLKKSDPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYG 255

Query: 3830 YSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDCLNVSKLHSNK 3651
             SDG R++ D  TKAY+ +VD S++ID++ +H QF  +A+SL++ RV +CL  SKL    
Sbjct: 256  LSDG-RVTFDDRTKAYKRMVDVSRRIDDYRQHPQFSVLASSLVSGRVSECLKSSKL---- 310

Query: 3650 ASTGDHSKYYSKQNDQPSST---GLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPR 3480
                     YSK+ D  +ST   G+KW+K+ VLSKRSDN FR  M+GDPKI+L EIG+P 
Sbjct: 311  ---------YSKKTDGETSTDPSGMKWLKDAVLSKRSDNAFRSTMVGDPKIKLWEIGIPE 361

Query: 3479 DVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKLIFIHSSDQLQVGDTLNRS 3300
            D++  L +S+HVN++N E +   C LHL++K EL  RR GKL+F+  +DQL++GD   R 
Sbjct: 362  DLASNLVVSDHVNSYNFENINLKCNLHLLTKEELFIRRNGKLMFLRKADQLEIGDIAYRP 421

Query: 3299 LEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQS 3120
            L+DGD+I++NR PSVH HSL+A S KILP+ S VSINPLCC P LGDFDGDCLHG++PQS
Sbjct: 422  LQDGDLILINRPPSVHQHSLIAFSAKILPIHSVVSINPLCCTPFLGDFDGDCLHGYIPQS 481

Query: 3119 VRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEML-F 2943
            VR+R+           L N+QDGRSL+SLTHDSL AAHLL   +VF  K E QQL+ML  
Sbjct: 482  VRSRIELGELVSLHHQLLNMQDGRSLVSLTHDSLAAAHLLTSTDVFLKKSEFQQLQMLCL 541

Query: 2942 PCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSS 2763
               +  PA+IK+   Q  RWTG+QLFSM+LP  M+FS    ++ + NG+++     S   
Sbjct: 542  SVLTPVPAVIKSMNFQGSRWTGKQLFSMLLPSGMKFSC-DRMLHILNGEVLTCSLGSSWL 600

Query: 2762 RNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLID 2583
            +N  SGLFS MF+ YG KA ++L S QEVLCE+LTMRGLSVSL DM+  SD Y+R KL +
Sbjct: 601  QNNTSGLFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDMF--SDHYSRRKLTE 658

Query: 2582 EVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARERRPISQASIAK 2403
             V  AL+EA+ +    +++L+P    ++K  DETED+  T   S+  +    + ++SI  
Sbjct: 659  GVKLALDEAEEAFRIKQILLDPINIPVLKCQDETEDV--TYRQSDCIQNNPSVIRSSIMA 716

Query: 2402 FKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKPLPFSIPLK 2223
            FKD+F DL  +V  ++S++NS+  M+ AGSKGS+ K           L A   PF +P +
Sbjct: 717  FKDVFSDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACVGLQLPASKFPFRVPSQ 776

Query: 2222 LSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFS 2043
            LSC  WN+ K+ +     + T+    G+N YAVI  SF++GL+PLEC +HA+S R+N FS
Sbjct: 777  LSCIRWNRQKSLNYE--AEGTNERVGGQNLYAVIRNSFIEGLNPLECLLHAISGRANFFS 834

Query: 2042 ENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIG 1863
            ENA++PGTLTRK+M+++RDI VAYDGTVR++YGQQ+VQFSY S                 
Sbjct: 835  ENADVPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYDS----------------- 877

Query: 1862 EDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRT 1683
             D   D+LG  PVG  AACSISEAAYGAL+HPVN LE SPL+NL++V +C     S +  
Sbjct: 878  ADDPVDKLGA-PVGCWAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHI 936

Query: 1682 ASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWV 1503
              L LS  LK+  YG EY +L VKNHL++V FSD+V ++MI Y  HD    +G     W 
Sbjct: 937  GLLFLSRHLKKYRYGLEYASLEVKNHLEQVNFSDLVETIMIIYDGHDKIRKEG----TWT 992

Query: 1502 LHFHVNKEMILRKRINVQSIVDALAGNYNCFREGRK--LPRLFMTSQSCVLGNEQKNLEE 1329
             HFH++KEM+ +KR+ ++ +++ L   YN  R+  K  +P + ++ + CV+G+E   +  
Sbjct: 993  THFHISKEMMKKKRLGLRFVIEELTKEYNATRDQLKNAIPSICISRRKCVVGDEGVKISA 1052

Query: 1328 LCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPKPD 1149
             CI+V A+       Q       LDTI+  V+P++L TL+KGF EFK V+I    Q + D
Sbjct: 1053 CCIAVVALAEPNSMSQ-------LDTIKKRVIPIILDTLLKGFLEFKDVEI----QCQHD 1101

Query: 1148 GQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRLDGAHDISDVFGIISSYSYFL 969
            G+L +K+ M   C   +FW TLQ+AC+P+M++IDWE SR     DI   +GI S++ YF+
Sbjct: 1102 GELLVKVCMSHHCKGGRFWATLQNACIPVMELIDWELSRPSNVADIFCSYGIDSAWKYFV 1161

Query: 968  GSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFSN 789
             SLKSA +DIGRNI  EHLL+++DS+SVTG+FH +S+ G+KQQR  LSISSPF++ACFS 
Sbjct: 1162 ESLKSATTDIGRNIRREHLLVIADSMSVTGQFHAISSHGLKQQRTRLSISSPFSEACFSR 1221

Query: 788  PEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEILL 609
            P + FI+AAK  S D+L G++DA+AWG+E   GT GPF+I++SGK H P+Q E+IY+ L 
Sbjct: 1222 PAQSFIDAAKQCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHSGKPHEPEQDESIYDFLR 1281

Query: 608  KQKHDSSSQIPGADKWKAQPGVDNAGGSMRRWNEHNCTTKKEKNVVCSSQPASVRIGSWD 429
              K      +        +   +NA             T     +         ++  WD
Sbjct: 1282 SPK---VQNVEKNHLDTRRQSTENASICRLACKSKGSATVNGVAITSDQDFLHAKVSIWD 1338

Query: 428  NISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFHP 249
            NI  M +SL  ML +YP+N  + E DKS L+EAL +HP+              G +P HP
Sbjct: 1339 NIIDMRASLQNMLREYPLNGYVMEPDKSKLIEALKFHPRGAEKIGVGVREIKVGLNPNHP 1398

Query: 248  KSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEK 129
             +RCFIL+RND TTEDFSY KCV  AAN ISP+ G  ++K
Sbjct: 1399 GTRCFILLRNDDTTEDFSYHKCVHGAANSISPQLGSYLKK 1438


>ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
 ref|XP_020394614.1| DNA dependent RNA polymerase D largest subunit isoform X1 [Zea mays]
 gb|ACL30979.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
          Length = 1444

 Score = 1261 bits (3263), Expect = 0.0
 Identities = 700/1540 (45%), Positives = 957/1540 (62%), Gaps = 21/1540 (1%)
 Frame = -1

Query: 4685 PSAQLLGLKFDLLTGDDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEGH 4506
            P A L  +KFDL+T  D+EK S ++I + SD+ S KLG+PN   QC TCGS    DC+GH
Sbjct: 8    PEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDGH 67

Query: 4505 FGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISSIRRLLLKMKFE 4326
            FGV KL   +++PY I ++VH LN+ICP C S                       +++ E
Sbjct: 68   FGVTKLAATVHNPYFIDDVVHFLNRICPGCLSPREGIDTK---------------RLERE 112

Query: 4325 KITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTLS 4146
            K+                                  QA CK+CS++  + YP+I FKTLS
Sbjct: 113  KV----------------------------------QATCKYCSKDGSKLYPSIVFKTLS 138

Query: 4145 ------------RDTNGKKCVAITAEF--NVPKKFENMSLSEVLPKDFWNFVPMLPSQHE 4008
                        R+ +  + ++I AE    +P + +     E LP DFW+FVP    Q +
Sbjct: 139  SPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSKGKGSLEGLPLDFWDFVPSENKQVQ 198

Query: 4007 NSVSMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTY 3828
            ++++    +I LSP Q FY+L++ D E I+QFV RREL+FLSC+PV+PNC RVVE  +  
Sbjct: 199  SNMT----KIILSPYQVFYMLKKSDPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYGL 254

Query: 3827 SDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDCLNVSKLHSNKA 3648
             DG RL+ D  TKAY+ +VD S++ID++ +H  F  +A+SL++SRV +CL  SKL+S KA
Sbjct: 255  PDG-RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSRVSECLKSSKLYSKKA 313

Query: 3647 STGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPRDVSR 3468
                 +  Y          G+KW+K+VVLSKRSDN FR IM+GDPKI+L EIG+P D+S 
Sbjct: 314  DGETSTDTY----------GMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSS 363

Query: 3467 TLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKLIFIHSSDQLQVGDTLNRSLEDG 3288
            +L +SEHV+++N +     C LHL++K EL  RR GKL+F+  +DQL++GD   R L+DG
Sbjct: 364  SLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPLQDG 423

Query: 3287 DIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVRAR 3108
            DII++NR PSVH HSL+ALS KILP+ S VSINPLCC P  GDFDGDCLHG++PQS+R+R
Sbjct: 424  DIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSR 483

Query: 3107 VXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEML-FPCKS 2931
            V           L N+QDGR+L+SLTHDSL AAHLL   +VF  K E+QQL+ML     +
Sbjct: 484  VELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSVST 543

Query: 2930 QFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRNFI 2751
              PA+IK+   Q   WTG+QLFSM+LP  M FS  + +  + +  L  S G S+   N  
Sbjct: 544  PAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSLGSSWLQNN-T 602

Query: 2750 SGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEVSF 2571
            SGLFS MF+ YG KA ++L S QEVLCE+LTMRGLSVSL D+Y+ SD Y+R KL + V  
Sbjct: 603  SGLFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEGVKL 662

Query: 2570 ALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARERRPISQASIAKFKDL 2391
            AL EA+ +    +++L+P    ++K HDETED+  T   S+  +    + ++SI  FKD+
Sbjct: 663  ALYEAEEAFRVKKILLDPINIPVLKCHDETEDV--TYRQSDCIQSNPSVIRSSIMAFKDV 720

Query: 2390 FRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKPLPFSIPLKLSCP 2211
            FRDL  +V  ++S++NS+  M+ AGSKGS+ K           L A   PF IP +LSC 
Sbjct: 721  FRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFRIPSQLSCI 780

Query: 2210 EWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFSENAE 2031
             WN  K+ +     + TS    G+N YAVI+ SF++GL+PLEC +HA+S R+N FSENA+
Sbjct: 781  SWNGQKSLNYEA--ESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGRANFFSENAD 838

Query: 2030 LPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIGEDSA 1851
            +PGTLTRK+M+++RDI VAYDGTVR++YGQQ+VQFSY S                  D  
Sbjct: 839  VPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYDSV-----------------DDL 881

Query: 1850 CDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTASLA 1671
             D+LG  PVG  AACSISEAAYGAL+HPVN LE SPL+NL++V +C     S +    L 
Sbjct: 882  VDKLGA-PVGCRAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLF 940

Query: 1670 LSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLHFH 1491
            LS  LK+  YG EY +L VKNHL+RV FSD+V ++MI Y  HD    +GM    W  HFH
Sbjct: 941  LSRHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGHDKIRNEGM----WTTHFH 996

Query: 1490 VNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQKNLEELCIS 1317
            +NK M+ +KR+ ++ +VD LA  Y+  R+     +P + ++ + C++G+E       CI+
Sbjct: 997  INKAMMKKKRLGLRFVVDELAKEYDTTRDQLNNAIPSIRISRRKCLVGDEGVKSSSCCIA 1056

Query: 1316 VGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPKPDGQLF 1137
            V  V  +ER      S + LDTI+  V+P +L TL+KGF EFK V+I    Q   DG+L 
Sbjct: 1057 V--VAHAERN-----SISQLDTIKTRVIPSILDTLLKGFLEFKDVEI----QCPHDGELL 1105

Query: 1136 LKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRLDGAHDISDVFGIISSYSYFLGSLK 957
            +K+ M E C   +FW TLQ+AC+P+M++IDWE S+     DI   +GI S++ YF+ SLK
Sbjct: 1106 VKVCMSEHCKGGRFWPTLQNACIPVMELIDWELSQPSNVSDIFCSYGIDSAWKYFVESLK 1165

Query: 956  SAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFSNPEKC 777
            SA +D GRNI  EHLL+++DSLSVTG+FH LS++G+KQQR  LSISSPF++ACFS P + 
Sbjct: 1166 SATTDTGRNIRREHLLVIADSLSVTGQFHALSSQGLKQQRTRLSISSPFSEACFSRPAQS 1225

Query: 776  FIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEILLKQKH 597
            FI AAK  S D+L G++DAVAWG+E   GT GPF+I++SGK H P+Q E+IY+ L     
Sbjct: 1226 FINAAKQCSVDNLCGSLDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQNESIYDFLC---- 1281

Query: 596  DSSSQIPGADKWKA---QPGVDNAG-GSMRRWNEHNCTTKKEKNVVCSSQPASVRIGSWD 429
              SS++   +K      +   +NA    +   +    TT     +         ++  WD
Sbjct: 1282 --SSKVRNFEKNHLDTRRQSTENASICRLACKSSKGSTTVNGVAITIDQDFLHAKVSIWD 1339

Query: 428  NISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFHP 249
            NI  M +SL  ML +YP+N  + E DKS L+EAL +H +              G +P HP
Sbjct: 1340 NIIDMRTSLQNMLREYPLNGYVAEPDKSQLIEALKFHSRGAEKIGVGVREIKIGLNPSHP 1399

Query: 248  KSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEK 129
             +RCFIL+RND TTEDFSY KCV  AA+ ISP+ G  ++K
Sbjct: 1400 GTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLGSYLKK 1439


>ref|XP_004970757.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Setaria italica]
 ref|XP_022682775.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Setaria italica]
          Length = 1451

 Score = 1261 bits (3263), Expect = 0.0
 Identities = 696/1551 (44%), Positives = 965/1551 (62%), Gaps = 26/1551 (1%)
 Frame = -1

Query: 4688 VPSAQLLGLKFDLLTGDDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEG 4509
            +P A L  + FDL+T  D+EK S ++I + SD+ S KLG+PN  SQC TCGS    DC+G
Sbjct: 7    LPRAILNAITFDLMTSTDMEKLSSISITEVSDVTSPKLGLPNGSSQCETCGSQSERDCDG 66

Query: 4508 HFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISSIRRLLLKMKF 4329
            HFGV KL   +++PY I E+VH LNQICP C +                 +R  +     
Sbjct: 67   HFGVTKLAATVHNPYFIDEVVHFLNQICPGCLN-----------------LRENIDLKTL 109

Query: 4328 EKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTL 4149
            E+ T+                                +A CK+CS++  + YP++ FKTL
Sbjct: 110  ERETV--------------------------------RATCKYCSKDGSKLYPSVIFKTL 137

Query: 4148 S------------RDTNGKKCVAITAEF--NVPKKFENMSLSEVLPKDFWNFVPMLPSQH 4011
            S            R  +  + ++I AE       K +     E LP+D+W+FVP    Q 
Sbjct: 138  SSPRVLLSKSKLHRSPSVMERISIVAEAIDRGSNKSKGKGSLEGLPQDYWDFVPSENQQL 197

Query: 4010 ENSVSMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHT 3831
            +++++    +I LSP Q F++L++ D E I+QFV RREL+FLSC+PV+PNC RVVE  + 
Sbjct: 198  QSTMT----KIILSPYQVFHMLKKSDPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYG 253

Query: 3830 YSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDCLNVSKLHSNK 3651
             SDG RL+ D  TKAY+ +VD SK+ID++ +H QF  +A+SL++SRV +CL  SKL    
Sbjct: 254  LSDG-RLTFDDRTKAYKRMVDVSKRIDDYRQHPQFSVLASSLVSSRVSECLKSSKL---- 308

Query: 3650 ASTGDHSKYYSKQNDQPSST---GLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPR 3480
                     YSK+ D  +ST   G+KW+K+ VLSKRSDN FR IM+GDPKI+L EIG+P 
Sbjct: 309  ---------YSKKTDVETSTDTYGMKWLKDAVLSKRSDNAFRSIMVGDPKIRLWEIGIPE 359

Query: 3479 DVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKLIFIHSSDQLQVGDTLNRS 3300
            +++  L +SEHV+++N+E +   C LHL++K EL  RR GKL+FI  ++QL+VGD   R 
Sbjct: 360  NLASNLVVSEHVSSYNLENINLKCNLHLLAKEELLIRRNGKLMFIRKANQLEVGDIAYRP 419

Query: 3299 LEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQS 3120
            L+DGD+I++NR PSVH HSL+ALS KILP++S VSINPLCC P LGDFDGDCLHG++PQS
Sbjct: 420  LQDGDLILINRPPSVHQHSLIALSTKILPIQSVVSINPLCCMPFLGDFDGDCLHGYIPQS 479

Query: 3119 VRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEMLFP 2940
            +R+R+           L N+QDGRSL+SLTHDSL AAHLL   +VF  + E+QQL+ML  
Sbjct: 480  IRSRIELGELVSLHQQLLNMQDGRSLVSLTHDSLAAAHLLTSTDVFLKESELQQLQML-- 537

Query: 2939 CKS----QFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVS 2772
            C S      PAIIK+   +   WTG+Q FSM+LP  M FS  S +  + +  L  S G S
Sbjct: 538  CLSVSTTPVPAIIKSMNFEGSLWTGKQFFSMLLPSGMNFSCDSKLHIIDSEVLTCSSGSS 597

Query: 2771 FSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNK 2592
            +  +N  +GLFS MF+ YG KA ++L S QEVLCE+LTMRGLSVSL D+Y+ SD Y+R K
Sbjct: 598  W-LQNSTTGLFSIMFKQYGRKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRK 656

Query: 2591 LIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARERRPISQAS 2412
            L   V  AL+EA+ +    +++L+P    ++K HDETED+  T   S++ +    + ++S
Sbjct: 657  LTQGVKLALDEAEEAFRIKQILLDPINIPVLKCHDETEDV--TYRQSDYIQSNLSVVRSS 714

Query: 2411 IAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKPLPFSI 2232
            I  FKD+F DL  +V +++S++NS+  M+ AGSKGS+ K           L A   PF I
Sbjct: 715  IMSFKDVFNDLLKMVQHHVSNDNSMMVMINAGSKGSMLKYVQQTACVGLQLPASKFPFRI 774

Query: 2231 PLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSN 2052
            P +LSC  WN+ K+   +   + TS   EG+N YAVI  SF++GL+PLEC +HA+S R+N
Sbjct: 775  PSQLSCVSWNRQKSL--NCEAESTSEHVEGQNLYAVIRNSFIEGLNPLECLLHAISGRAN 832

Query: 2051 MFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHF 1872
             FSE+A++PGTLTRK+M+++RD+ VAYDGTVR++YGQ ++QFSY + +   C     +H 
Sbjct: 833  FFSEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQHIMQFSYDTADDMCC-----NHD 887

Query: 1871 SIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSV 1692
             +GE        G PVGS AACSISEAAYGALDHPVN LE SPL+NL++V +C     S 
Sbjct: 888  LVGE-------LGAPVGSWAACSISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATNSG 940

Query: 1691 NRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLS 1512
            +    L LS  LK+  Y  EY +L VKNHL+RV FSD+V ++MI Y   D K  KG    
Sbjct: 941  DHVGLLFLSKHLKKYRYSLEYASLEVKNHLERVNFSDLVETIMIIYDGCD-KTRKG---G 996

Query: 1511 PWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQKN 1338
            PW  HFH++KEM+ +KR+ +  +V+ L   Y+  R      +P + ++ + C +G++   
Sbjct: 997  PWTTHFHISKEMMKKKRLGLGFVVEELTKEYDATRNQLNNAIPSVHISKRKCSVGDQCVQ 1056

Query: 1337 LEELCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQP 1158
                CI++ A   S    Q       LDTI+  V+P +L TL+KGF EFK V+I    Q 
Sbjct: 1057 NSACCITLVAQAESNSMSQ-------LDTIKKRVIPSILDTLLKGFLEFKDVEI----QC 1105

Query: 1157 KPDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRLDGAHDISDVFGIISSYS 978
            + DG+L +K+ M E C   +FW TLQ+AC+P+M++IDWE+S+    +DI   +GI S++ 
Sbjct: 1106 RHDGELLVKVGMSEHCKAGRFWATLQNACIPVMELIDWEQSQPKNVYDIFCSYGIDSAWK 1165

Query: 977  YFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQAC 798
             F+ SLKS  SDIGRN+  EHLL+V+DSLSVTG+F  LS++G+ QQR+ LSISSPF++AC
Sbjct: 1166 CFVESLKSVTSDIGRNVRREHLLIVADSLSVTGQFQALSSQGLNQQRSRLSISSPFSEAC 1225

Query: 797  FSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYE 618
            FS P + FI AAKH S D+L G++DA+AWG+E   GT GPF+I+++GK H P+Q E+IY+
Sbjct: 1226 FSRPARSFINAAKHCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHAGKPHEPEQNESIYD 1285

Query: 617  ILLKQKHDSSSQIPGADK---WKAQPGVDNAGGSMRRWNEHNCTTKKEKNVVCSSQPASV 447
             L       S ++   +K      +   +NA          +  T +   +         
Sbjct: 1286 FL------RSPEVRNFEKDHMDTCRQSTENALRCRLACKSKDSATVQGGAMTIDQGFLHA 1339

Query: 446  RIGSWDNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXG 267
            ++G WDNI  M +SL  ML +YP+N  + E DKS L+EAL +HP               G
Sbjct: 1340 KVGIWDNIIDMRTSLQNMLREYPLNGFVKETDKSQLVEALKFHPNGAQKIGVGVREIKIG 1399

Query: 266  HSPFHPKSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEKELDSR 114
             +P HP +RCFIL+R DGTTEDFSY KCV  AAN ISP+ G   EK+L  R
Sbjct: 1400 LNPSHPGTRCFILLRKDGTTEDFSYNKCVQGAANSISPQLGSYFEKKLHRR 1450


>gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea
            mays]
          Length = 1444

 Score = 1257 bits (3252), Expect = 0.0
 Identities = 699/1540 (45%), Positives = 956/1540 (62%), Gaps = 21/1540 (1%)
 Frame = -1

Query: 4685 PSAQLLGLKFDLLTGDDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEGH 4506
            P A L  +KFDL+T  D+EK S ++I + SD+ S KLG+PN   QC TCGS    DC+GH
Sbjct: 8    PEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDGH 67

Query: 4505 FGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISSIRRLLLKMKFE 4326
            FGV KL   +++PY I ++VH LN+ICP C S                       +++ E
Sbjct: 68   FGVTKLAATVHNPYFIDDVVHFLNRICPGCLSPREGIDTK---------------RLERE 112

Query: 4325 KITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTLS 4146
            K+                                  QA CK+ S++  + YP+I FKTLS
Sbjct: 113  KV----------------------------------QATCKYYSKDGSKLYPSIVFKTLS 138

Query: 4145 ------------RDTNGKKCVAITAEF--NVPKKFENMSLSEVLPKDFWNFVPMLPSQHE 4008
                        R+ +  + ++I AE    +P + +     E LP DFW+FVP    Q +
Sbjct: 139  SPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSKGKGSLEGLPLDFWDFVPSENKQVQ 198

Query: 4007 NSVSMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTY 3828
            ++++    +I LSP Q FY+L++ D E I+QFV RREL+FLSC+PV+PNC RVVE  +  
Sbjct: 199  SNMT----KIILSPYQVFYMLKKSDPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYGL 254

Query: 3827 SDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDCLNVSKLHSNKA 3648
             DG RL+ D  TKAY+ +VD S++ID++ +H  F  +A+SL++SRV +CL  SKL+S KA
Sbjct: 255  PDG-RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSRVSECLKSSKLYSKKA 313

Query: 3647 STGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPRDVSR 3468
                 +  Y          G+KW+K+VVLSKRSDN FR IM+GDPKI+L EIG+P D+S 
Sbjct: 314  DGETSTDTY----------GMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSS 363

Query: 3467 TLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKLIFIHSSDQLQVGDTLNRSLEDG 3288
            +L +SEHV+++N +     C LHL++K EL  RR GKL+F+  +DQL++GD   R L+DG
Sbjct: 364  SLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPLQDG 423

Query: 3287 DIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVRAR 3108
            DII++NR PSVH HSL+ALS KILP+ S VSINPLCC P  GDFDGDCLHG++PQS+R+R
Sbjct: 424  DIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSR 483

Query: 3107 VXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEML-FPCKS 2931
            V           L N+QDGR+L+SLTHDSL AAHLL   +VF  K E+QQL+ML     +
Sbjct: 484  VELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSVST 543

Query: 2930 QFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRNFI 2751
              PA+IK+   Q   WTG+QLFSM+LP  M FS  + +  + +  L  S G S+   N  
Sbjct: 544  PAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSLGSSWLQNN-T 602

Query: 2750 SGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEVSF 2571
            SGLFS MF+ YG KA ++L S QEVLCE+LTMRGLSVSL D+Y+ SD Y+R KL + V  
Sbjct: 603  SGLFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEGVKL 662

Query: 2570 ALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARERRPISQASIAKFKDL 2391
            AL EA+ +    +++L+P    ++K HDETED+  T   S+  +    + ++SI  FKD+
Sbjct: 663  ALYEAEEAFRVKKILLDPINIPVLKCHDETEDV--TYRQSDCIQSNPSVIRSSIMAFKDV 720

Query: 2390 FRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKPLPFSIPLKLSCP 2211
            FRDL  +V  ++S++NS+  M+ AGSKGS+ K           L A   PF IP +LSC 
Sbjct: 721  FRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFRIPSQLSCI 780

Query: 2210 EWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFSENAE 2031
             WN  K+ +     + TS    G+N YAVI+ SF++GL+PLEC +HA+S R+N FSENA+
Sbjct: 781  SWNGQKSLNYEA--ESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGRANFFSENAD 838

Query: 2030 LPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIGEDSA 1851
            +PGTLTRK+M+++RDI VAYDGTVR++YGQQ+VQFSY S                  D  
Sbjct: 839  VPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYDSV-----------------DDL 881

Query: 1850 CDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTASLA 1671
             D+LG  PVG  AACSISEAAYGAL+HPVN LE SPL+NL++V +C     S +    L 
Sbjct: 882  VDKLGA-PVGCRAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLF 940

Query: 1670 LSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLHFH 1491
            LS  LK+  YG EY +L VKNHL+RV FSD+V ++MI Y  HD    +GM    W  HFH
Sbjct: 941  LSRHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGHDKIRNEGM----WTTHFH 996

Query: 1490 VNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQKNLEELCIS 1317
            +NK M+ +KR+ ++ +VD LA  Y+  R+     +P + ++ + C++G+E       CI+
Sbjct: 997  INKAMMKKKRLGLRFVVDELAKEYDTTRDQLNNAIPSIRISRRKCLVGDEGVKSSSCCIA 1056

Query: 1316 VGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPKPDGQLF 1137
            V  V  +ER      S + LDTI+  V+P +L TL+KGF EFK V+I    Q   DG+L 
Sbjct: 1057 V--VAHAERN-----SISQLDTIKTRVIPSILDTLLKGFLEFKDVEI----QCPHDGELL 1105

Query: 1136 LKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRLDGAHDISDVFGIISSYSYFLGSLK 957
            +K+ M E C   +FW TLQ+AC+P+M++IDWE S+     DI   +GI S++ YF+ SLK
Sbjct: 1106 VKVCMSEHCKGGRFWPTLQNACIPVMELIDWELSQPSNVSDIFCSYGIDSAWKYFVESLK 1165

Query: 956  SAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFSNPEKC 777
            SA +D GRNI  EHLL+++DSLSVTG+FH LS++G+KQQR  LSISSPF++ACFS P + 
Sbjct: 1166 SATTDTGRNIRREHLLVIADSLSVTGQFHALSSQGLKQQRTRLSISSPFSEACFSRPAQS 1225

Query: 776  FIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEILLKQKH 597
            FI AAK  S D+L G++DAVAWG+E   GT GPF+I++SGK H P+Q E+IY+ L     
Sbjct: 1226 FINAAKQCSVDNLCGSLDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQNESIYDFLC---- 1281

Query: 596  DSSSQIPGADKWKA---QPGVDNAG-GSMRRWNEHNCTTKKEKNVVCSSQPASVRIGSWD 429
              SS++   +K      +   +NA    +   +    TT     +         ++  WD
Sbjct: 1282 --SSKVRNFEKNHLDTRRQSTENASICRLACKSSKGSTTVNGVAITIDQDFLHAKVSIWD 1339

Query: 428  NISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFHP 249
            NI  M +SL  ML +YP+N  + E DKS L+EAL +H +              G +P HP
Sbjct: 1340 NIIDMRTSLQNMLREYPLNGYVAEPDKSQLIEALKFHSRGAEKIGVGVREIKIGLNPSHP 1399

Query: 248  KSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEK 129
             +RCFIL+RND TTEDFSY KCV  AA+ ISP+ G  ++K
Sbjct: 1400 GTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLGSYLKK 1439


>ref|XP_022682776.1| DNA-directed RNA polymerase IV subunit 1 isoform X2 [Setaria italica]
          Length = 1450

 Score = 1256 bits (3250), Expect = 0.0
 Identities = 697/1551 (44%), Positives = 964/1551 (62%), Gaps = 26/1551 (1%)
 Frame = -1

Query: 4688 VPSAQLLGLKFDLLTGDDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEG 4509
            +P A L  + FDL+T  D+EK S ++I + SD+ S KLG+PN  SQC TCGS    DC+G
Sbjct: 7    LPRAILNAITFDLMTSTDMEKLSSISITEVSDVTSPKLGLPNGSSQCETCGSQSERDCDG 66

Query: 4508 HFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISSIRRLLLKMKF 4329
            HFGV KL   +++PY I E+VH LNQICP C +                 +R  +     
Sbjct: 67   HFGVTKLAATVHNPYFIDEVVHFLNQICPGCLN-----------------LRENIDLKTL 109

Query: 4328 EKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTL 4149
            E+ T+                                +A CK+CS  S+  YP++ FKTL
Sbjct: 110  ERETV--------------------------------RATCKYCSDGSK-LYPSVIFKTL 136

Query: 4148 S------------RDTNGKKCVAITAEF--NVPKKFENMSLSEVLPKDFWNFVPMLPSQH 4011
            S            R  +  + ++I AE       K +     E LP+D+W+FVP    Q 
Sbjct: 137  SSPRVLLSKSKLHRSPSVMERISIVAEAIDRGSNKSKGKGSLEGLPQDYWDFVPSENQQL 196

Query: 4010 ENSVSMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHT 3831
            +++++    +I LSP Q F++L++ D E I+QFV RREL+FLSC+PV+PNC RVVE  + 
Sbjct: 197  QSTMT----KIILSPYQVFHMLKKSDPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYG 252

Query: 3830 YSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDCLNVSKLHSNK 3651
             SDG RL+ D  TKAY+ +VD SK+ID++ +H QF  +A+SL++SRV +CL  SKL    
Sbjct: 253  LSDG-RLTFDDRTKAYKRMVDVSKRIDDYRQHPQFSVLASSLVSSRVSECLKSSKL---- 307

Query: 3650 ASTGDHSKYYSKQNDQPSST---GLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPR 3480
                     YSK+ D  +ST   G+KW+K+ VLSKRSDN FR IM+GDPKI+L EIG+P 
Sbjct: 308  ---------YSKKTDVETSTDTYGMKWLKDAVLSKRSDNAFRSIMVGDPKIRLWEIGIPE 358

Query: 3479 DVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKLIFIHSSDQLQVGDTLNRS 3300
            +++  L +SEHV+++N+E +   C LHL++K EL  RR GKL+FI  ++QL+VGD   R 
Sbjct: 359  NLASNLVVSEHVSSYNLENINLKCNLHLLAKEELLIRRNGKLMFIRKANQLEVGDIAYRP 418

Query: 3299 LEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQS 3120
            L+DGD+I++NR PSVH HSL+ALS KILP++S VSINPLCC P LGDFDGDCLHG++PQS
Sbjct: 419  LQDGDLILINRPPSVHQHSLIALSTKILPIQSVVSINPLCCMPFLGDFDGDCLHGYIPQS 478

Query: 3119 VRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEMLFP 2940
            +R+R+           L N+QDGRSL+SLTHDSL AAHLL   +VF  + E+QQL+ML  
Sbjct: 479  IRSRIELGELVSLHQQLLNMQDGRSLVSLTHDSLAAAHLLTSTDVFLKESELQQLQML-- 536

Query: 2939 CKS----QFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVS 2772
            C S      PAIIK+   +   WTG+Q FSM+LP  M FS  S +  + +  L  S G S
Sbjct: 537  CLSVSTTPVPAIIKSMNFEGSLWTGKQFFSMLLPSGMNFSCDSKLHIIDSEVLTCSSGSS 596

Query: 2771 FSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNK 2592
            +  +N  +GLFS MF+ YG KA ++L S QEVLCE+LTMRGLSVSL D+Y+ SD Y+R K
Sbjct: 597  W-LQNSTTGLFSIMFKQYGRKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRK 655

Query: 2591 LIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARERRPISQAS 2412
            L   V  AL+EA+ +    +++L+P    ++K HDETED+  T   S++ +    + ++S
Sbjct: 656  LTQGVKLALDEAEEAFRIKQILLDPINIPVLKCHDETEDV--TYRQSDYIQSNLSVVRSS 713

Query: 2411 IAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKPLPFSI 2232
            I  FKD+F DL  +V +++S++NS+  M+ AGSKGS+ K           L A   PF I
Sbjct: 714  IMSFKDVFNDLLKMVQHHVSNDNSMMVMINAGSKGSMLKYVQQTACVGLQLPASKFPFRI 773

Query: 2231 PLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSN 2052
            P +LSC  WN+ K+   +   + TS   EG+N YAVI  SF++GL+PLEC +HA+S R+N
Sbjct: 774  PSQLSCVSWNRQKSL--NCEAESTSEHVEGQNLYAVIRNSFIEGLNPLECLLHAISGRAN 831

Query: 2051 MFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHF 1872
             FSE+A++PGTLTRK+M+++RD+ VAYDGTVR++YGQ ++QFSY + +   C     +H 
Sbjct: 832  FFSEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQHIMQFSYDTADDMCC-----NHD 886

Query: 1871 SIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSV 1692
             +GE        G PVGS AACSISEAAYGALDHPVN LE SPL+NL++V +C     S 
Sbjct: 887  LVGE-------LGAPVGSWAACSISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATNSG 939

Query: 1691 NRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLS 1512
            +    L LS  LK+  Y  EY +L VKNHL+RV FSD+V ++MI Y   D K  KG    
Sbjct: 940  DHVGLLFLSKHLKKYRYSLEYASLEVKNHLERVNFSDLVETIMIIYDGCD-KTRKG---G 995

Query: 1511 PWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQKN 1338
            PW  HFH++KEM+ +KR+ +  +V+ L   Y+  R      +P + ++ + C +G++   
Sbjct: 996  PWTTHFHISKEMMKKKRLGLGFVVEELTKEYDATRNQLNNAIPSVHISKRKCSVGDQCVQ 1055

Query: 1337 LEELCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQP 1158
                CI++ A   S    Q       LDTI+  V+P +L TL+KGF EFK V+I    Q 
Sbjct: 1056 NSACCITLVAQAESNSMSQ-------LDTIKKRVIPSILDTLLKGFLEFKDVEI----QC 1104

Query: 1157 KPDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRLDGAHDISDVFGIISSYS 978
            + DG+L +K+ M E C   +FW TLQ+AC+P+M++IDWE+S+    +DI   +GI S++ 
Sbjct: 1105 RHDGELLVKVGMSEHCKAGRFWATLQNACIPVMELIDWEQSQPKNVYDIFCSYGIDSAWK 1164

Query: 977  YFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQAC 798
             F+ SLKS  SDIGRN+  EHLL+V+DSLSVTG+F  LS++G+ QQR+ LSISSPF++AC
Sbjct: 1165 CFVESLKSVTSDIGRNVRREHLLIVADSLSVTGQFQALSSQGLNQQRSRLSISSPFSEAC 1224

Query: 797  FSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYE 618
            FS P + FI AAKH S D+L G++DA+AWG+E   GT GPF+I+++GK H P+Q E+IY+
Sbjct: 1225 FSRPARSFINAAKHCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHAGKPHEPEQNESIYD 1284

Query: 617  ILLKQKHDSSSQIPGADK---WKAQPGVDNAGGSMRRWNEHNCTTKKEKNVVCSSQPASV 447
             L       S ++   +K      +   +NA          +  T +   +         
Sbjct: 1285 FL------RSPEVRNFEKDHMDTCRQSTENALRCRLACKSKDSATVQGGAMTIDQGFLHA 1338

Query: 446  RIGSWDNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXG 267
            ++G WDNI  M +SL  ML +YP+N  + E DKS L+EAL +HP               G
Sbjct: 1339 KVGIWDNIIDMRTSLQNMLREYPLNGFVKETDKSQLVEALKFHPNGAQKIGVGVREIKIG 1398

Query: 266  HSPFHPKSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEKELDSR 114
             +P HP +RCFIL+R DGTTEDFSY KCV  AAN ISP+ G   EK+L  R
Sbjct: 1399 LNPSHPGTRCFILLRKDGTTEDFSYNKCVQGAANSISPQLGSYFEKKLHRR 1449


>ref|XP_015692233.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
            subunit 1-like [Oryza brachyantha]
          Length = 1472

 Score = 1249 bits (3232), Expect = 0.0
 Identities = 691/1562 (44%), Positives = 952/1562 (60%), Gaps = 37/1562 (2%)
 Frame = -1

Query: 4688 VPSAQLLGLKFDLLTGDDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEG 4509
            +P A+L+ +KF L+T  D+EK S  +I +  D+ ++KLG+PN   QC TCGS  + DC+G
Sbjct: 16   MPVAELIAIKFSLMTSSDMEKLSSASIIEMCDVTNAKLGLPNGAPQCATCGSQSVRDCDG 75

Query: 4508 HFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISSIRRLLLKMKF 4329
            HFGVIKL   +++PY I E+VH+LNQICP C +                           
Sbjct: 76   HFGVIKLAATVHNPYFIEEVVHLLNQICPGCLT--------------------------- 108

Query: 4328 EKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTL 4149
                                  LK +G  K+   +  QA CK+CS++  + YP+I FK L
Sbjct: 109  ----------------------LKQNGDMKRADGITIQATCKYCSKDGAKLYPSIIFKML 146

Query: 4148 S------------RDTNGKKCVAITAEF--NVPKKFENMSLSEVLPKDFWNFVPMLPSQH 4011
            +            R+T+    ++I AE    V    +N +  E LP DFW+F+P    ++
Sbjct: 147  TSPRVTLSRSKLHRNTSVIDKMSIIAEVASRVTHNSKNKA-PETLPHDFWDFIP---DEN 202

Query: 4010 ENSVSMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHT 3831
            + S S    +I LSP Q F++L++LD E I    PRREL+FLSC+PV+PNC RV E  + 
Sbjct: 203  QPSQSNVTKKI-LSPYQVFHMLKKLDPELISHVTPRRELLFLSCLPVTPNCHRVAEMPYG 261

Query: 3830 YSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDCLNVSKLHSNK 3651
            +SDGPRL+ D  TKAY+ +VD S++ID++ +H QFG  A+S++ SRV +C+  SKL    
Sbjct: 262  HSDGPRLAFDDRTKAYKRMVDVSRRIDDYRQHPQFGVFASSVVTSRVMECMKSSKL---- 317

Query: 3650 ASTGDHSKYYSKQNDQPSST-----GLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGL 3486
                     Y+K++D  SST     G KW+K+++LSKRSDN FR IM+GDPKI L EIG+
Sbjct: 318  ---------YAKKSDGESSTSTDTYGTKWLKDIILSKRSDNAFRSIMVGDPKISLNEIGI 368

Query: 3485 PRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKLIFIHSSDQLQVGDTLN 3306
            P D++  L +SE V+ +N E +   C LHL++K  L  RR GKLIF+  +++LQ+GD   
Sbjct: 369  PMDLALNLVVSEQVSYYNFETINLKCNLHLLTKEVLLVRRNGKLIFVRKANKLQIGDIAY 428

Query: 3305 RSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVP 3126
            R L+DGD+++VNR PSVH HSL+ALS K+LPV SAVSINPLCC P  GDFDGDCLHG+VP
Sbjct: 429  RLLQDGDLVLVNRPPSVHQHSLVALSAKLLPVHSAVSINPLCCDPFKGDFDGDCLHGYVP 488

Query: 3125 QSVRARVXXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEML 2946
            QS+++RV           L N QDGRSL+SLTHDSL AAH L   ++   K E QQL+ML
Sbjct: 489  QSIQSRVELEELVGLNRQLLNAQDGRSLVSLTHDSLAAAHQLTSADILLQKAEFQQLQML 548

Query: 2945 FPCKS----QFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPG 2778
              C S      P++IK+   Q P WTG+QLF ++LP  M  S   ++  + + +++    
Sbjct: 549  --CSSISSTPMPSVIKSANSQGPLWTGKQLFGLLLPSGMNISFDQNL-HIKDSEVLTCSS 605

Query: 2777 VSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTR 2598
             S   +N  S LFS MF+ YG KA  +L S Q+VLCE+LT+RGLSVSL D+YL SD Y+R
Sbjct: 606  GSLWLQNNTSSLFSVMFKEYGRKALQFLSSTQDVLCEFLTIRGLSVSLSDLYLFSDHYSR 665

Query: 2597 NKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARERRPISQ 2418
             KL +EV  AL+EA+ +    +++L P     +K +D  +DLS++   S+F +    I +
Sbjct: 666  RKLSEEVHLALDEAEEAFQIKQILLNPVSIPNLKYYDGADDLSNSYGQSDFTQASPSIIK 725

Query: 2417 ASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKPLPF 2238
            +SI  FK +F DL  +V +++S +NS+  M+ +GSKGS+ K           L A   PF
Sbjct: 726  SSITSFKSIFNDLLKMVQHHVSKDNSMMAMINSGSKGSIPKFVQQTACVGLQLPASKFPF 785

Query: 2237 SIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCR 2058
             IP  LSC  WN+HK+ D  +    T  S  G++ YAVI  SFLDGL+PLEC +HA+S R
Sbjct: 786  KIPSILSCVSWNRHKSLDYEI-TDYTIESMGGQSMYAVIRNSFLDGLNPLECLLHAISGR 844

Query: 2057 SNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHS 1878
            +N FSENA++PGTLTRK+M+++RD  +AYDGTVR++YGQQ+VQFSY + +    E     
Sbjct: 845  ANFFSENADVPGTLTRKLMYHLRDTYIAYDGTVRSSYGQQIVQFSYDTSDGMYIE----- 899

Query: 1877 HFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRT 1698
            H   GE        G PVGS AACSISEAAYGALDHPVN LE SPL+NL++VL+C     
Sbjct: 900  HDIEGEP-------GTPVGSWAACSISEAAYGALDHPVNGLEDSPLMNLQEVLKCHKGTN 952

Query: 1697 SVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMR 1518
            SV+ T  L LS  L++  YGFEY +L VK+HL+RV FSD+V +VMI Y   D + +KG  
Sbjct: 953  SVDHTGLLFLSKHLRKYRYGFEYASLEVKDHLERVDFSDLVDTVMILYGGSDIQKSKG-- 1010

Query: 1517 LSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQ 1344
             +PWV HFH+N+E +  KR+ +  +V  L   YN  R+     +P + + S  C +GN  
Sbjct: 1011 -NPWVTHFHLNQEAMKIKRLGLGYVVRELIDQYNALRKQLNNTIPSVCILSSKCSVGNGC 1069

Query: 1343 KNLEELCIS-VGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWD 1167
               +  C++ V  VES+        S + L  I++ V+P +L TL+KGF EFK V +   
Sbjct: 1070 VKNQACCVTMVVQVESN--------STSQLTIIKERVIPSILATLLKGFLEFKNVKV--- 1118

Query: 1166 SQPKPDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRLDGAHDISDVFGIIS 987
             Q + D +L +++ M E C   KFW TLQ+AC+PIM++IDWERSR +  +D+   +GI S
Sbjct: 1119 -QCQQDSELVVRVDMSEHCKSGKFWATLQNACIPIMELIDWERSRPERLYDVFCSYGIDS 1177

Query: 986  SYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFT 807
            ++ +F+ SL+S    IGRNI  +HLL+V+D LSV+G+FHGLS++G+KQQR  LSISSPF+
Sbjct: 1178 AWKFFVESLRSTTDAIGRNIRRQHLLVVADCLSVSGQFHGLSSQGLKQQRTSLSISSPFS 1237

Query: 806  QACFSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTEN 627
            +ACFS P   FI AAK  S D L GT+DA+AWG+E   GT GPFKI+YSGK H  KQ EN
Sbjct: 1238 EACFSRPAHSFINAAKKDSVDKLSGTLDAIAWGKEPCTGTSGPFKILYSGKSHETKQKEN 1297

Query: 626  IYEIL-----------LKQKHDSSSQIPGADKWKAQPGVDNAGGSMRRWNEHNCTTKKEK 480
            IY  L           L   H   ++     KW++              N    TT    
Sbjct: 1298 IYNFLHNPEIQAFEKNLMDTHRKRTE--KTSKWRS------------ALNSEGITTINGG 1343

Query: 479  NVVCSSQPASVRIGSWDNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAX 300
            ++  + +    ++G W+NI  M + L  ML +Y +N  + E DKS L+EAL +HP+    
Sbjct: 1344 SISVNQKFLGAKVGIWENIIDMRTCLQNMLREYTLNDIVTEQDKSCLIEALKFHPRGFDK 1403

Query: 299  XXXXXXXXXXGHSPFHPKSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEKELD 120
                      G +P HP SRCFI++RND TT DFSY KCV+ AAN +SPE G  +EK L 
Sbjct: 1404 IGAGIREIKIGVNPGHPNSRCFIVLRNDDTTADFSYNKCVLGAANSVSPELGSYIEKILS 1463

Query: 119  SR 114
            +R
Sbjct: 1464 NR 1465


>ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Brachypodium distachyon]
 gb|KQK07373.1| hypothetical protein BRADI_2g34876v3 [Brachypodium distachyon]
 gb|PNT71743.1| hypothetical protein BRADI_2g34876v3 [Brachypodium distachyon]
          Length = 1470

 Score = 1249 bits (3232), Expect = 0.0
 Identities = 681/1541 (44%), Positives = 947/1541 (61%), Gaps = 16/1541 (1%)
 Frame = -1

Query: 4688 VPSAQLLGLKFDLLTGDDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEG 4509
            VP A+L  LKFDLL+  DIE  S  NI +ASD+ S+KLG+PNA  QC TCGS ++ DC+G
Sbjct: 14   VPMAELKALKFDLLSSADIETLSSANIIEASDVTSAKLGLPNAAPQCVTCGSQNVRDCDG 73

Query: 4508 HFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISSIRRLLLKMKF 4329
            H GVIKLP  +Y PY + ++V  LNQICP C +                           
Sbjct: 74   HSGVIKLPATVYSPYFLEQLVQFLNQICPGCWTP-------------------------- 107

Query: 4328 EKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTL 4149
                                   K +   K+      Q  CK+CS++    YP++ FK L
Sbjct: 108  -----------------------KQNRDTKRSDAATIQEPCKYCSKDG--LYPSVIFKVL 142

Query: 4148 S------------RDTNGKKCVAITAEFNVPKKFENMSLSEVLPKDFWNFVPMLPSQHEN 4005
            +            R+T+    V++TAE  V    +N S  EVLP D+WNFVP     H  
Sbjct: 143  TSPRITLSKSKLQRNTSVMDKVSVTAE--VINMSKNKSSLEVLPHDYWNFVP-----HNQ 195

Query: 4004 SVSMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTYS 3825
                +  +I LSP Q F++L+++D E I +F PRREL+FLSC+PV+PN  RV E  + +S
Sbjct: 196  PPQPNTTKILLSPYQVFHILKQVDLELITKFAPRRELLFLSCLPVTPNRHRVAEMPYRFS 255

Query: 3824 DGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDCLNVSKLHSNKAS 3645
            DGP L++D  TKAY+  VDASKKID++ +H QF  +A+S + SRV +CL  SKL+S K  
Sbjct: 256  DGPSLAYDDRTKAYKRTVDASKKIDDYRQHPQFSVLASSFVTSRVMECLQSSKLYSKKTD 315

Query: 3644 TGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPRDVSRT 3465
                +  Y     +  S G KW+K+ +LSKRSD  FR IM+GDPKI+L EIG+P D++  
Sbjct: 316  KESSTDSYGTSVKKNDSYGTKWLKDAILSKRSDYAFRSIMVGDPKIRLHEIGIPMDLA-D 374

Query: 3464 LYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKLIFIHSSDQLQVGDTLNRSLEDGD 3285
            L++ EHV+ +N + +   C LHL++K  L ARR GKLI++   +QL++GD + R L+DGD
Sbjct: 375  LFVPEHVSIYNFKSINLKCNLHLLAKELLIARRNGKLIYVRKENQLEIGDIVYRPLQDGD 434

Query: 3284 IIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVRARV 3105
            +I+VNR PSVH HSL+ALS K+LPV+S V+INPL CAPL GDFDGDCLHG+VPQS+ +RV
Sbjct: 435  LILVNRPPSVHQHSLIALSAKLLPVQSVVAINPLNCAPLSGDFDGDCLHGYVPQSIGSRV 494

Query: 3104 XXXXXXXXXXXLFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEMLFPCKSQ- 2928
                       L N+QDGRSL+SLTHDSL AAHLL    V  +K E QQL+ML    S  
Sbjct: 495  ELGELVSLSHQLLNMQDGRSLVSLTHDSLAAAHLLTSSGVLLNKTEFQQLQMLCVSLSPT 554

Query: 2927 -FPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRNFI 2751
              P++IK+   Q P WTG+QLF M+LP  M FS    +  + + +++   G SF  +N  
Sbjct: 555  PVPSVIKSINPQGPLWTGKQLFGMLLPSGMNFSPDPKL-HIKDSEVLACSGGSFWLQNNT 613

Query: 2750 SGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEVSF 2571
            SGLFS +F+ YG +A  +L S Q++LCE+LTMRGLSVSL D+YL SD Y+R K  +EV+ 
Sbjct: 614  SGLFSVLFKQYGGEALEFLSSAQDMLCEFLTMRGLSVSLSDIYLFSDHYSRRKFAEEVNL 673

Query: 2570 ALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARERRPISQASIAKFKDL 2391
            AL+EA+ +    +++L P     +K +D+ +DLS +   S+F +   PI ++SI  FK +
Sbjct: 674  ALDEAEEAFRVTQILLSPNFIPHLKCYDDCDDLSDSYEQSDFVQSNLPIIKSSIMAFKSV 733

Query: 2390 FRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXLSAKPLPFSIPLKLSCP 2211
            F DL  +V  +   +NS+  M+ AGSKGS+ K           L A   PF IP +L+C 
Sbjct: 734  FSDLLKMVQQHTPKDNSMMAMINAGSKGSMLKFVQQAACVGLQLPAGKFPFRIPSELTCA 793

Query: 2210 EWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFSENAE 2031
             WN+HK+ D  +  +       G+NS+AVI  SF++GL+PLEC +H++S R+N FSENA+
Sbjct: 794  SWNRHKSLDCDIS-EGARKRLGGQNSHAVIRNSFIEGLNPLECLLHSISGRANFFSENAD 852

Query: 2030 LPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIGEDSA 1851
            +PGTLT+ +M+++RDI VAYDGTVR++YGQQ+VQF+Y + E             I  D  
Sbjct: 853  VPGTLTKNLMYHLRDIYVAYDGTVRSSYGQQIVQFTYDTAE------------DIYTDCG 900

Query: 1850 CDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTASLA 1671
             +   G PVGS AACSISEAAYGALDHPVN +E SPL+NL++VL+C     S++    L 
Sbjct: 901  QEGEFGAPVGSWAACSISEAAYGALDHPVNVIEDSPLMNLQEVLKCQKGTNSLDHFGLLF 960

Query: 1670 LSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLHFH 1491
            LS  LK+  YGFEY +L V+N+L+ + FS++V +VMI Y     + TKG   SPW+ HFH
Sbjct: 961  LSKNLKKYRYGFEYASLYVQNYLEPMDFSELVNTVMIQYDGGGVQKTKG---SPWITHFH 1017

Query: 1490 VNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQKNLEELCIS 1317
            ++KEM+ RKR+ ++ +V+ L  +YN  R+     +P+++++   C   ++  N +  CI+
Sbjct: 1018 ISKEMMKRKRLGLRLLVEDLTEHYNAKRDQLNNVIPKVYISKCKCSDDDDCINNQTCCIT 1077

Query: 1316 VGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPKPDGQLF 1137
            V A +     E +  S + LD ++   +PVLL T +KGF EFK V+I    Q + D +L 
Sbjct: 1078 VVAQD-----ESNSTSTSQLDDLKKRAIPVLLATPVKGFLEFKDVEI----QCQRDNELV 1128

Query: 1136 LKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRLDGAHDISDVFGIISSYSYFLGSLK 957
            +K+ M + C    FW TL+ AC+ IM +IDWERSR    +DI    GI S++ YF+ SL+
Sbjct: 1129 VKVNMSKHCKSGIFWTTLKKACIGIMGLIDWERSRPGSVYDIFCPCGIDSAWKYFVESLR 1188

Query: 956  SAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFSNPEKC 777
            S   DIGRNIH EHLL+V+D+LSV+G+FHGLS++G+KQQR  LS SSPF++ACFS P   
Sbjct: 1189 SKTDDIGRNIHREHLLVVADTLSVSGQFHGLSSQGLKQQRTQLSTSSPFSEACFSRPADT 1248

Query: 776  FIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKQTENIYEILLKQKH 597
            FI+AAK  S D+L G +DA+AWG+E P GT GPFKI+Y+GK H P Q ENIY  L     
Sbjct: 1249 FIKAAKQCSVDNLCGNIDALAWGKEPPAGTSGPFKIMYAGKPHEPVQNENIYGFL----- 1303

Query: 596  DSSSQIPGADKWKAQPGVDNAGGSMRRWNEHNCTTKKEKNVVCSSQPASVRIGSWDNISA 417
              + ++ G +K   +        +  RW+  N T      +         ++G WD+I  
Sbjct: 1304 -HNPEVWGPEKNHMETDSTRTKNASERWSSGNATF-NGGTISVEQNYLGAKVGVWDSIID 1361

Query: 416  MSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXGHSPFHPKSRC 237
            M + L  ML +Y ++  + E DKS ++EAL +HP+              G  P HP +RC
Sbjct: 1362 MRTCLQNMLREYQLDEYVVELDKSRVIEALRFHPRGREKIGVGIRDIKIGQHPSHPGTRC 1421

Query: 236  FILIRNDGTTEDFSYRKCVIEAANQISPEFGLLVEKELDSR 114
            FIL+RND TTED SY+KCV  AA+ ISP+ G  +EK L +R
Sbjct: 1422 FILVRNDDTTEDVSYKKCVQGAADSISPQLGSHMEKILQTR 1462