BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00006545
         (984 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55536.1| retrotransposon polyprotein [Rosa rugosa]              102   1e-33
ref|XP_004309292.1| PREDICTED: uncharacterized protein LOC101304...    99   2e-33
gb|AFP55573.1| retrotransposon protein [Rosa rugosa]                  100   3e-33
emb|CAN79264.1| hypothetical protein VITISV_034881 [Vitis vinifera]    93   4e-33
gb|PRQ59184.1| putative RNA-directed DNA polymerase [Rosa chinen...    96   4e-33
emb|CAN69821.1| hypothetical protein VITISV_030674 [Vitis vinifera]    97   8e-33
gb|AQY61302.1| Pol [Vitis vinifera]                                    93   1e-32
emb|CAN66208.1| hypothetical protein VITISV_035070 [Vitis vinifera]    92   2e-32
gb|KYP47392.1| Retrovirus-related Pol polyprotein from transposo...    94   2e-32
gb|PRQ29277.1| putative RNA-directed DNA polymerase [Rosa chinen...    99   2e-32
emb|CAN80162.1| hypothetical protein VITISV_038102 [Vitis vinifera]    92   3e-32
gb|PRQ16677.1| putative RNA-directed DNA polymerase [Rosa chinen...    97   5e-32
gb|PRQ53193.1| putative RNA-directed DNA polymerase [Rosa chinen...    97   5e-32
gb|KYP54831.1| Retrovirus-related Pol polyprotein from transposo...    92   5e-32
gb|AQY61293.1| Gag-Pol [Arabidopsis thaliana]                          91   7e-32
gb|AAF67380.1| Hypothetical protein T15F17.l [Arabidopsis thaliana]    91   7e-32
dbj|BAA97087.1| copia-type pol polyprotein-like [Arabidopsis tha...    91   7e-32
emb|CAN60947.1| hypothetical protein VITISV_015758 [Vitis vinifera]    93   1e-31
gb|AQY61295.1| Pol [Coffea arabica]                                    94   1e-31
gb|AQY61297.1| Pol [Coffea canephora]                                  94   2e-31

>gb|AFP55536.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1508

 Score =  102 bits (253), Expect(2) = 1e-33
 Identities = 50/70 (71%), Positives = 62/70 (88%)
 Frame = +2

Query: 284  IQRYEAYLVAQRFSQRPGIDYEETHSLVIDIITFRYLISLVV*EKLDTRLMHVMTTYLCG 463
            + RY++ LVAQ FSQRPGIDYEET+S V+D+ITFRYL+SLVV EKLD +LM V+TTYL G
Sbjct: 1004 VVRYKSRLVAQGFSQRPGIDYEETYSPVMDVITFRYLVSLVVSEKLDMQLMDVVTTYLYG 1063

Query: 464  NLDSEIHMKI 493
            +LDSEI+MK+
Sbjct: 1064 DLDSEIYMKV 1073



 Score = 70.9 bits (172), Expect(2) = 1e-33
 Identities = 40/95 (42%), Positives = 53/95 (55%)
 Frame = +3

Query: 522  NKYRNTHCNR*KRVMCGLK*YERMWYNMLREYISREGYDNNSICPCMFIKKFLNGFVILA 701
            +K R+    R K  + GLK   RMWYN L +Y+  +GY NN ICPC+FIK+  +GF I+A
Sbjct: 1085 SKPRSAFSIRLKHSLYGLKQSGRMWYNRLSDYLIGKGYINNEICPCVFIKRTSSGFAIVA 1144

Query: 702  VYVDNIT**DXXXXXXXXXXXXXXXEFEMNDLSET 806
            VYVD++                   EFEM DL +T
Sbjct: 1145 VYVDDMN-LIGTLDELKETAKYLKSEFEMKDLGKT 1178


>ref|XP_004309292.1| PREDICTED: uncharacterized protein LOC101304635, partial [Fragaria
           vesca subsp. vesca]
          Length = 521

 Score = 99.0 bits (245), Expect(2) = 2e-33
 Identities = 49/67 (73%), Positives = 59/67 (88%)
 Frame = +2

Query: 293 YEAYLVAQRFSQRPGIDYEETHSLVIDIITFRYLISLVV*EKLDTRLMHVMTTYLCGNLD 472
           Y+A LVAQ FSQRPGIDYEET+S V+D+ITFRYL+SLVV EKLD +LM V+T YL G+LD
Sbjct: 375 YKARLVAQGFSQRPGIDYEETYSPVMDVITFRYLVSLVVSEKLDMQLMDVVTAYLYGDLD 434

Query: 473 SEIHMKI 493
           SEI+MK+
Sbjct: 435 SEIYMKV 441



 Score = 73.2 bits (178), Expect(2) = 2e-33
 Identities = 33/68 (48%), Positives = 48/68 (70%)
 Frame = +3

Query: 516 TQNKYRNTHCNR*KRVMCGLK*YERMWYNMLREYISREGYDNNSICPCMFIKKFLNGFVI 695
           + +K R+ +  R +R + GLK   RMWY  L +Y+ REGY N+ +CPC+FIKK  +GF I
Sbjct: 451 SNSKPRSAYAIRLQRSLYGLKQSGRMWYTRLSDYLIREGYKNDELCPCVFIKKTSSGFAI 510

Query: 696 LAVYVDNI 719
           +AVYVD++
Sbjct: 511 VAVYVDDM 518


>gb|AFP55573.1| retrotransposon protein [Rosa rugosa]
          Length = 2242

 Score =  100 bits (248), Expect(2) = 3e-33
 Identities = 49/70 (70%), Positives = 61/70 (87%)
 Frame = +2

Query: 284  IQRYEAYLVAQRFSQRPGIDYEETHSLVIDIITFRYLISLVV*EKLDTRLMHVMTTYLCG 463
            + RY+A LVAQ FSQRPGIDY+ET+S V+D+ITFRYL+SLVV EKLD +LM V+T YL G
Sbjct: 1006 VVRYKARLVAQGFSQRPGIDYDETYSPVMDVITFRYLVSLVVSEKLDMQLMDVVTAYLYG 1065

Query: 464  NLDSEIHMKI 493
            +LDSEI+MK+
Sbjct: 1066 DLDSEIYMKV 1075



 Score = 71.6 bits (174), Expect(2) = 3e-33
 Identities = 40/95 (42%), Positives = 54/95 (56%)
 Frame = +3

Query: 522  NKYRNTHCNR*KRVMCGLK*YERMWYNMLREYISREGYDNNSICPCMFIKKFLNGFVILA 701
            +K R+    R KR + GLK   RMWYN L +Y+  +GY N+ ICPC+FIK+  +GF I+A
Sbjct: 1087 SKPRSAFSIRLKRSLYGLKQSRRMWYNRLSDYLIGKGYINDEICPCVFIKRTSSGFAIVA 1146

Query: 702  VYVDNIT**DXXXXXXXXXXXXXXXEFEMNDLSET 806
            VYVD++                   EFEM DL +T
Sbjct: 1147 VYVDDMN-LIGTLDELKETAKYLKSEFEMKDLGKT 1180


>emb|CAN79264.1| hypothetical protein VITISV_034881 [Vitis vinifera]
          Length = 1360

 Score = 93.2 bits (230), Expect(2) = 4e-33
 Identities = 48/70 (68%), Positives = 58/70 (82%)
 Frame = +2

Query: 284  IQRYEAYLVAQRFSQRPGIDYEETHSLVIDIITFRYLISLVV*EKLDTRLMHVMTTYLCG 463
            I RY+A LVAQ FSQRPGIDYEET+S V+D ITFR+LISL V E LD RLM V+T YL G
Sbjct: 876  IIRYKARLVAQGFSQRPGIDYEETYSPVMDAITFRFLISLAVSEGLDMRLMDVITAYLYG 935

Query: 464  NLDSEIHMKI 493
            ++D++I+MKI
Sbjct: 936  SMDNDIYMKI 945



 Score = 78.2 bits (191), Expect(2) = 4e-33
 Identities = 46/104 (44%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
 Frame = +3

Query: 504  GFNL---TQNKYRNTHCNR*KRVMCGLK*YERMWYNMLREYISREGYDNNSICPCMFIKK 674
            GF L      K RN +  + +R + GLK   RMWYN L EY+ +EGY NN ICPC+FIKK
Sbjct: 948  GFKLPDANNTKPRNMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKK 1007

Query: 675  FLNGFVILAVYVDNIT**DXXXXXXXXXXXXXXXEFEMNDLSET 806
               GF I+AVYVD++                   EFEM DL +T
Sbjct: 1008 SETGFAIIAVYVDDLN-LVGTPEDLTRTTNYLKKEFEMKDLGKT 1050


>gb|PRQ59184.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 797

 Score = 95.9 bits (237), Expect(2) = 4e-33
 Identities = 47/70 (67%), Positives = 60/70 (85%)
 Frame = +2

Query: 284 IQRYEAYLVAQRFSQRPGIDYEETHSLVIDIITFRYLISLVV*EKLDTRLMHVMTTYLCG 463
           I RY+A LVAQ FSQRPGIDY+ET+S V+D+ITFRYLISL + EKL+ +LM V+T YL G
Sbjct: 310 IVRYKARLVAQGFSQRPGIDYDETYSPVMDVITFRYLISLAISEKLNIQLMDVVTAYLYG 369

Query: 464 NLDSEIHMKI 493
           +LD+EI+MK+
Sbjct: 370 DLDTEIYMKV 379



 Score = 75.5 bits (184), Expect(2) = 4e-33
 Identities = 43/93 (46%), Positives = 53/93 (56%)
 Frame = +3

Query: 531 RNTHCNR*KRVMCGLK*YERMWYNMLREYISREGYDNNSICPCMFIKKFLNGFVILAVYV 710
           RNT   R +R + GLK   RMWYN L EY+   GY NN +CPC+FIKK  +GFVI+AVYV
Sbjct: 394 RNTLSIRLRRSLYGLKQSGRMWYNRLSEYLIGMGYVNNELCPCVFIKKTSSGFVIVAVYV 453

Query: 711 DNIT**DXXXXXXXXXXXXXXXEFEMNDLSETD 809
           D++                   EFEM DL  T+
Sbjct: 454 DDMN-LIGTPEEIKETAKHLKSEFEMKDLGRTN 485


>emb|CAN69821.1| hypothetical protein VITISV_030674 [Vitis vinifera]
          Length = 570

 Score = 96.7 bits (239), Expect(2) = 8e-33
 Identities = 49/70 (70%), Positives = 60/70 (85%)
 Frame = +2

Query: 284 IQRYEAYLVAQRFSQRPGIDYEETHSLVIDIITFRYLISLVV*EKLDTRLMHVMTTYLCG 463
           I RY+A LVAQ FSQRPG+DYEET+S VID ITFR+LISL V E LD RLM+V+TTYL G
Sbjct: 201 IIRYKARLVAQGFSQRPGVDYEETYSPVIDAITFRFLISLAVSEGLDMRLMNVITTYLYG 260

Query: 464 NLDSEIHMKI 493
           ++D++I+MKI
Sbjct: 261 SIDNDIYMKI 270



 Score = 73.6 bits (179), Expect(2) = 8e-33
 Identities = 44/104 (42%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
 Frame = +3

Query: 504 GFNLTQ---NKYRNTHCNR*KRVMCGLK*YERMWYNMLREYISREGYDNNSICPCMFIKK 674
           GF L +    K R+ +  + ++ + GLK   RMWYN L EY+ +EGY NN ICPC+FIKK
Sbjct: 273 GFKLLEANNTKPRSIYSIKLQQSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKK 332

Query: 675 FLNGFVILAVYVDNIT**DXXXXXXXXXXXXXXXEFEMNDLSET 806
               FVI+AVYVD++                   EFEM DL +T
Sbjct: 333 SETRFVIIAVYVDDLN-LVGTPKELIRITNYLNKEFEMKDLGKT 375


>gb|AQY61302.1| Pol [Vitis vinifera]
          Length = 1223

 Score = 92.8 bits (229), Expect(2) = 1e-32
 Identities = 47/70 (67%), Positives = 58/70 (82%)
 Frame = +2

Query: 284 IQRYEAYLVAQRFSQRPGIDYEETHSLVIDIITFRYLISLVV*EKLDTRLMHVMTTYLCG 463
           I RY+A LVAQ FSQRPGIDYEET+S V+D ITFR+LISL + E LD RLM V+T YL G
Sbjct: 739 IIRYKARLVAQGFSQRPGIDYEETYSPVMDTITFRFLISLAISEGLDMRLMDVITAYLYG 798

Query: 464 NLDSEIHMKI 493
           ++D++I+MKI
Sbjct: 799 SMDNDIYMKI 808



 Score = 76.6 bits (187), Expect(2) = 1e-32
 Identities = 45/104 (43%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
 Frame = +3

Query: 504  GFNLTQ---NKYRNTHCNR*KRVMCGLK*YERMWYNMLREYISREGYDNNSICPCMFIKK 674
            GF L+     K R+ +  + +R + GLK   RMWYN L EY+ +EGY NN ICPC+FIKK
Sbjct: 811  GFKLSDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKK 870

Query: 675  FLNGFVILAVYVDNIT**DXXXXXXXXXXXXXXXEFEMNDLSET 806
               GF I+AVYVD++                   EFEM DL +T
Sbjct: 871  SETGFAIIAVYVDDLN-LVGTPEELTRTTNYLKKEFEMKDLGKT 913


>emb|CAN66208.1| hypothetical protein VITISV_035070 [Vitis vinifera]
          Length = 1496

 Score = 92.4 bits (228), Expect(2) = 2e-32
 Identities = 48/70 (68%), Positives = 58/70 (82%)
 Frame = +2

Query: 284  IQRYEAYLVAQRFSQRPGIDYEETHSLVIDIITFRYLISLVV*EKLDTRLMHVMTTYLCG 463
            I RY+A LVAQ  SQRPGIDYEET+S V+D ITFR+LISL V E LD RLM V+TTYL G
Sbjct: 1012 IIRYKARLVAQGXSQRPGIDYEETYSPVMDAITFRFLISLAVSEGLDMRLMDVITTYLYG 1071

Query: 464  NLDSEIHMKI 493
            ++D++I+MKI
Sbjct: 1072 SMDNDIYMKI 1081



 Score = 76.3 bits (186), Expect(2) = 2e-32
 Identities = 45/104 (43%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
 Frame = +3

Query: 504  GFNL---TQNKYRNTHCNR*KRVMCGLK*YERMWYNMLREYISREGYDNNSICPCMFIKK 674
            GF L      K R+ +  + +R + GLK   RMWYN L EY+ +EGY NN ICPC+FIKK
Sbjct: 1084 GFELPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKK 1143

Query: 675  FLNGFVILAVYVDNIT**DXXXXXXXXXXXXXXXEFEMNDLSET 806
               GF I+AVYVD++                   EFEM DL +T
Sbjct: 1144 SETGFAIIAVYVDDLN-LVGTPEELTRTTNYLKKEFEMKDLGKT 1186


>gb|KYP47392.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 814

 Score = 94.0 bits (232), Expect(2) = 2e-32
 Identities = 48/70 (68%), Positives = 59/70 (84%)
 Frame = +2

Query: 284 IQRYEAYLVAQRFSQRPGIDYEETHSLVIDIITFRYLISLVV*EKLDTRLMHVMTTYLCG 463
           I RY+A LVAQ FSQRPGID+EET+S V+D  TFRYLISLVV EKL+  LM V+TTYL G
Sbjct: 337 IVRYKARLVAQGFSQRPGIDFEETYSPVVDANTFRYLISLVVHEKLNLHLMDVVTTYLYG 396

Query: 464 NLDSEIHMKI 493
           +LD++I+MK+
Sbjct: 397 SLDADIYMKL 406



 Score = 74.7 bits (182), Expect(2) = 2e-32
 Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
 Frame = +3

Query: 504 GFNLTQNKY-RNTHCNR*KRVMCGLK*YERMWYNMLREYISREGYDNNSICPCMFIKKFL 680
           GFNL  +   R  +  +  + + GLK   RMWYN L EY+ +EGY N+ ICPC+FIK+  
Sbjct: 409 GFNLPDDAISREDYSIKLNKSLYGLKQSGRMWYNRLSEYLLQEGYKNDPICPCIFIKRSQ 468

Query: 681 NGFVILAVYVDNIT**DXXXXXXXXXXXXXXXEFEMNDLSET 806
           NGF I+ VYVD+I                   EFEM DL  T
Sbjct: 469 NGFAIIVVYVDDIN-IIGTPKELSKAIDCLKKEFEMKDLGRT 509


>gb|PRQ29277.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 725

 Score = 99.0 bits (245), Expect(2) = 2e-32
 Identities = 49/70 (70%), Positives = 60/70 (85%)
 Frame = +2

Query: 284 IQRYEAYLVAQRFSQRPGIDYEETHSLVIDIITFRYLISLVV*EKLDTRLMHVMTTYLCG 463
           + RY+A LVAQ FSQRPGIDYEET+  V+D+ITFRYL+SLVV EKLD +LM V+T YL G
Sbjct: 223 VVRYKARLVAQGFSQRPGIDYEETYYPVMDVITFRYLVSLVVSEKLDMQLMDVVTAYLYG 282

Query: 464 NLDSEIHMKI 493
           +LDSEI+MK+
Sbjct: 283 DLDSEIYMKV 292



 Score = 69.7 bits (169), Expect(2) = 2e-32
 Identities = 39/95 (41%), Positives = 54/95 (56%)
 Frame = +3

Query: 522 NKYRNTHCNR*KRVMCGLK*YERMWYNMLREYISREGYDNNSICPCMFIKKFLNGFVILA 701
           +K R+    R +R + GLK   RMWYN L +Y+  +GY N+ ICPC+FIK+  +GF I+A
Sbjct: 304 SKPRSAFSIRLRRSLYGLKQSGRMWYNRLSDYLIGKGYVNDEICPCVFIKRTSSGFAIVA 363

Query: 702 VYVDNIT**DXXXXXXXXXXXXXXXEFEMNDLSET 806
           VYVD++                   EFEM DL +T
Sbjct: 364 VYVDDMN-LIGTLDELKETAKYLKSEFEMKDLGKT 397


>emb|CAN80162.1| hypothetical protein VITISV_038102 [Vitis vinifera]
          Length = 701

 Score = 91.7 bits (226), Expect(2) = 3e-32
 Identities = 47/70 (67%), Positives = 58/70 (82%)
 Frame = +2

Query: 284 IQRYEAYLVAQRFSQRPGIDYEETHSLVIDIITFRYLISLVV*EKLDTRLMHVMTTYLCG 463
           I RY+A LVAQ FSQRPGIDYEET+S ++D ITFR+LISL V E LD  LM V+TTYL G
Sbjct: 228 IIRYKARLVAQGFSQRPGIDYEETYSPIMDAITFRFLISLAVLEGLDMCLMDVITTYLYG 287

Query: 464 NLDSEIHMKI 493
           ++D++I+MKI
Sbjct: 288 SMDNDIYMKI 297



 Score = 76.6 bits (187), Expect(2) = 3e-32
 Identities = 45/104 (43%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
 Frame = +3

Query: 504 GFNLTQ---NKYRNTHCNR*KRVMCGLK*YERMWYNMLREYISREGYDNNSICPCMFIKK 674
           GF L +    K R+ +  + +R + GLK   RMWYN L EY+ +EGY NN ICPC+FIKK
Sbjct: 300 GFKLPEANNTKPRSMYSIKLQRSLYGLKQSGRMWYNCLSEYLLKEGYVNNPICPCIFIKK 359

Query: 675 FLNGFVILAVYVDNIT**DXXXXXXXXXXXXXXXEFEMNDLSET 806
              GF I+AVYVD++                   EFEM DL +T
Sbjct: 360 SETGFAIIAVYVDDLN-LVGTSEELTRTTNYLKKEFEMKDLGKT 402


>gb|PRQ16677.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1276

 Score = 97.1 bits (240), Expect(2) = 5e-32
 Identities = 49/70 (70%), Positives = 60/70 (85%)
 Frame = +2

Query: 284 IQRYEAYLVAQRFSQRPGIDYEETHSLVIDIITFRYLISLVV*EKLDTRLMHVMTTYLCG 463
           I RY+A LVAQ FSQRPGIDYEET+S V+D+ITFRYL+SLVV EKL+ +LM V+T YL G
Sbjct: 776 IVRYKARLVAQGFSQRPGIDYEETYSPVMDVITFRYLVSLVVSEKLNMQLMDVVTAYLYG 835

Query: 464 NLDSEIHMKI 493
           +LD+EI+M I
Sbjct: 836 DLDTEIYMNI 845



 Score = 70.5 bits (171), Expect(2) = 5e-32
 Identities = 39/92 (42%), Positives = 52/92 (56%)
 Frame = +3

Query: 531  RNTHCNR*KRVMCGLK*YERMWYNMLREYISREGYDNNSICPCMFIKKFLNGFVILAVYV 710
            R+    R KR + GLK   RMWYN L +Y+  +GY NN +CPC+FIK+  +GF I+AVYV
Sbjct: 860  RSAFAIRLKRSLYGLKQSGRMWYNRLSDYLIGKGYVNNELCPCVFIKRTSSGFSIVAVYV 919

Query: 711  DNIT**DXXXXXXXXXXXXXXXEFEMNDLSET 806
            D++                   EFEM DL +T
Sbjct: 920  DDMN-IIGTLKELRETAEHLKSEFEMKDLGKT 950


>gb|PRQ53193.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 945

 Score = 97.1 bits (240), Expect(2) = 5e-32
 Identities = 49/70 (70%), Positives = 60/70 (85%)
 Frame = +2

Query: 284 IQRYEAYLVAQRFSQRPGIDYEETHSLVIDIITFRYLISLVV*EKLDTRLMHVMTTYLCG 463
           I RY+A LVAQ FSQRPGIDYEET+S V+D+ITFRYL+SLVV EKL+ +LM V+T YL G
Sbjct: 571 IVRYKARLVAQGFSQRPGIDYEETYSPVMDVITFRYLVSLVVSEKLNMQLMDVVTAYLYG 630

Query: 464 NLDSEIHMKI 493
           +LD+EI+M I
Sbjct: 631 DLDTEIYMNI 640



 Score = 70.5 bits (171), Expect(2) = 5e-32
 Identities = 39/92 (42%), Positives = 52/92 (56%)
 Frame = +3

Query: 531 RNTHCNR*KRVMCGLK*YERMWYNMLREYISREGYDNNSICPCMFIKKFLNGFVILAVYV 710
           R+    R KR + GLK   RMWYN L +Y+  +GY NN +CPC+FIK+  +GF I+AVYV
Sbjct: 655 RSAFAIRLKRSLYGLKQSGRMWYNRLSDYLIGKGYVNNELCPCVFIKRTSSGFSIVAVYV 714

Query: 711 DNIT**DXXXXXXXXXXXXXXXEFEMNDLSET 806
           D++                   EFEM DL +T
Sbjct: 715 DDMN-IIGTLKELRETAEHLKSEFEMKDLGKT 745


>gb|KYP54831.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 834

 Score = 92.0 bits (227), Expect(2) = 5e-32
 Identities = 47/70 (67%), Positives = 58/70 (82%)
 Frame = +2

Query: 284 IQRYEAYLVAQRFSQRPGIDYEETHSLVIDIITFRYLISLVV*EKLDTRLMHVMTTYLCG 463
           I RY+A LVAQ FSQRPGID+EET+S V+D  TFRYLISLVV EKL+  LM V+T YL G
Sbjct: 467 IVRYKARLVAQGFSQRPGIDFEETYSPVVDANTFRYLISLVVHEKLNLHLMDVVTAYLYG 526

Query: 464 NLDSEIHMKI 493
           +LD++I+MK+
Sbjct: 527 SLDADIYMKL 536



 Score = 75.5 bits (184), Expect(2) = 5e-32
 Identities = 43/103 (41%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
 Frame = +3

Query: 504 GFNLTQNKY-RNTHCNR*KRVMCGLK*YERMWYNMLREYISREGYDNNSICPCMFIKKFL 680
           GFNL  +   R  +  +  + + GLK   RMWYN L EY+ +EGY N+ ICPC+FIK+  
Sbjct: 539 GFNLPDDAISREDYSIKLNKSLYGLKQSGRMWYNRLSEYLLQEGYKNDPICPCIFIKRSQ 598

Query: 681 NGFVILAVYVDNIT**DXXXXXXXXXXXXXXXEFEMNDLSETD 809
           NGF I+ VYVD+I                   EFEM DL  T+
Sbjct: 599 NGFAIIVVYVDDIN-IIGTPKELSKAIDCLKKEFEMKDLGRTE 640


>gb|AQY61293.1| Gag-Pol [Arabidopsis thaliana]
          Length = 1552

 Score = 90.9 bits (224), Expect(2) = 7e-32
 Identities = 45/70 (64%), Positives = 56/70 (80%)
 Frame = +2

Query: 284  IQRYEAYLVAQRFSQRPGIDYEETHSLVIDIITFRYLISLVV*EKLDTRLMHVMTTYLCG 463
            I R++A LVAQ FSQRPG+DYEET+S V+D  TFRYLISL + E LD RLM V+T YL G
Sbjct: 1077 IVRHKARLVAQGFSQRPGVDYEETYSPVVDATTFRYLISLAIRENLDLRLMDVVTAYLYG 1136

Query: 464  NLDSEIHMKI 493
             LD+EI+M++
Sbjct: 1137 PLDNEIYMRL 1146



 Score = 76.3 bits (186), Expect(2) = 7e-32
 Identities = 44/97 (45%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
 Frame = +3

Query: 519  QNKYRNTHCNR*KRVMCGLK*YERMWYNMLREYISREGYDNNSICPCMFIKKFLN-GFVI 695
            +N  R+ +C R  R + GLK   RMWYN L EY+ +EGY N+ I PC+FIKKF + GFVI
Sbjct: 1157 KNGSRDQYCIRLNRSLYGLKQSGRMWYNRLSEYLVKEGYKNDPISPCIFIKKFASKGFVI 1216

Query: 696  LAVYVDNIT**DXXXXXXXXXXXXXXXEFEMNDLSET 806
            +AVYVD++                   EFEM DL +T
Sbjct: 1217 IAVYVDDLN-ILGTSGEIAQTVEYLKKEFEMKDLGKT 1252


>gb|AAF67380.1| Hypothetical protein T15F17.l [Arabidopsis thaliana]
          Length = 1141

 Score = 90.9 bits (224), Expect(2) = 7e-32
 Identities = 45/70 (64%), Positives = 56/70 (80%)
 Frame = +2

Query: 284 IQRYEAYLVAQRFSQRPGIDYEETHSLVIDIITFRYLISLVV*EKLDTRLMHVMTTYLCG 463
           I R++A LVAQ FSQRPG+DYEET+S V+D  TFRYLISL + E LD RLM V+T YL G
Sbjct: 668 IVRHKARLVAQGFSQRPGVDYEETYSPVVDATTFRYLISLAIRENLDLRLMDVVTAYLYG 727

Query: 464 NLDSEIHMKI 493
            LD+EI+M++
Sbjct: 728 PLDNEIYMRL 737



 Score = 76.3 bits (186), Expect(2) = 7e-32
 Identities = 44/97 (45%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
 Frame = +3

Query: 519  QNKYRNTHCNR*KRVMCGLK*YERMWYNMLREYISREGYDNNSICPCMFIKKFLN-GFVI 695
            +N  R+ +C R  R + GLK   RMWYN L EY+ +EGY N+ I PC+FIKKF + GFVI
Sbjct: 748  KNGSRDQYCIRMNRSLYGLKQSGRMWYNRLSEYLVKEGYKNDPISPCIFIKKFASKGFVI 807

Query: 696  LAVYVDNIT**DXXXXXXXXXXXXXXXEFEMNDLSET 806
            +AVYVD++                   EFEM DL +T
Sbjct: 808  IAVYVDDLN-ILGTSGEIAQTVEYLKKEFEMKDLGKT 843


>dbj|BAA97087.1| copia-type pol polyprotein-like [Arabidopsis thaliana]
          Length = 1123

 Score = 90.9 bits (224), Expect(2) = 7e-32
 Identities = 45/70 (64%), Positives = 56/70 (80%)
 Frame = +2

Query: 284 IQRYEAYLVAQRFSQRPGIDYEETHSLVIDIITFRYLISLVV*EKLDTRLMHVMTTYLCG 463
           I R++A LVAQ FSQRPG+DYEET+S V+D  TFRYLISL + E LD RLM V+T YL G
Sbjct: 668 IVRHKARLVAQGFSQRPGVDYEETYSPVVDATTFRYLISLAIRENLDLRLMDVVTAYLYG 727

Query: 464 NLDSEIHMKI 493
            LD+EI+M++
Sbjct: 728 PLDNEIYMRL 737



 Score = 76.3 bits (186), Expect(2) = 7e-32
 Identities = 44/97 (45%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
 Frame = +3

Query: 519  QNKYRNTHCNR*KRVMCGLK*YERMWYNMLREYISREGYDNNSICPCMFIKKFLN-GFVI 695
            +N  R+ +C R  R + GLK   RMWYN L EY+ +EGY N+ I PC+FIKKF + GFVI
Sbjct: 748  KNGSRDQYCIRLNRSLYGLKQSGRMWYNRLSEYLVKEGYKNDPISPCIFIKKFASKGFVI 807

Query: 696  LAVYVDNIT**DXXXXXXXXXXXXXXXEFEMNDLSET 806
            +AVYVD++                   EFEM DL +T
Sbjct: 808  IAVYVDDLN-ILGTSGEIAQTVEYLKKEFEMKDLGKT 843


>emb|CAN60947.1| hypothetical protein VITISV_015758 [Vitis vinifera]
          Length = 1306

 Score = 93.2 bits (230), Expect(2) = 1e-31
 Identities = 48/70 (68%), Positives = 58/70 (82%)
 Frame = +2

Query: 284  IQRYEAYLVAQRFSQRPGIDYEETHSLVIDIITFRYLISLVV*EKLDTRLMHVMTTYLCG 463
            I RY+A LVAQ FSQRPGIDYEET+S V+D ITFR+LISL V E LD RLM V+T YL G
Sbjct: 896  IIRYKARLVAQGFSQRPGIDYEETYSPVMDAITFRFLISLAVSEGLDMRLMDVITAYLYG 955

Query: 464  NLDSEIHMKI 493
            ++D++I+MKI
Sbjct: 956  SMDNDIYMKI 965



 Score = 73.2 bits (178), Expect(2) = 1e-31
 Identities = 44/104 (42%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
 Frame = +3

Query: 504  GFNL---TQNKYRNTHCNR*KRVMCGLK*YERMWYNMLREYISREGYDNNSICPCMFIKK 674
            GF L      K R+ +  + +R + GLK   RMWYN L EY+ +EGY NN ICPC+FIKK
Sbjct: 968  GFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKK 1027

Query: 675  FLNGFVILAVYVDNIT**DXXXXXXXXXXXXXXXEFEMNDLSET 806
                F I+AVYVD++                   EFEM DL +T
Sbjct: 1028 SETRFAIIAVYVDDLN-LVGTPEELTRTTNYLKKEFEMKDLGKT 1070


>gb|AQY61295.1| Pol [Coffea arabica]
          Length = 1160

 Score = 94.0 bits (232), Expect(2) = 1e-31
 Identities = 46/70 (65%), Positives = 57/70 (81%)
 Frame = +2

Query: 284 IQRYEAYLVAQRFSQRPGIDYEETHSLVIDIITFRYLISLVV*EKLDTRLMHVMTTYLCG 463
           I RY+A LVAQ FSQRPG DY+ET+S V+D ITFRYL+S  V EKLD RLM V+T YL G
Sbjct: 685 IVRYKARLVAQGFSQRPGFDYDETYSPVVDAITFRYLVSFAVHEKLDMRLMDVVTAYLYG 744

Query: 464 NLDSEIHMKI 493
           NL+++I+M+I
Sbjct: 745 NLENDIYMRI 754



 Score = 72.4 bits (176), Expect(2) = 1e-31
 Identities = 36/78 (46%), Positives = 54/78 (69%), Gaps = 3/78 (3%)
 Frame = +3

Query: 495 IS*GFNLTQ---NKYRNTHCNR*KRVMCGLK*YERMWYNMLREYISREGYDNNSICPCMF 665
           IS GFN+ +   +  +N +  + ++ + GLK   RMWYN L E +++EGY N+ ICPC+F
Sbjct: 754 ISEGFNMPEACKSNPKNIYSIKLQKSLYGLKQSGRMWYNRLNECLTKEGYTNDPICPCVF 813

Query: 666 IKKFLNGFVILAVYVDNI 719
           IKK  + FVI+AVYVD++
Sbjct: 814 IKKNGSNFVIIAVYVDDL 831


>gb|AQY61297.1| Pol [Coffea canephora]
          Length = 1045

 Score = 94.0 bits (232), Expect(2) = 2e-31
 Identities = 46/70 (65%), Positives = 57/70 (81%)
 Frame = +2

Query: 284 IQRYEAYLVAQRFSQRPGIDYEETHSLVIDIITFRYLISLVV*EKLDTRLMHVMTTYLCG 463
           I RY+A LVAQ FSQRPG DY+ET+S V+D ITFRYL+S  V EKLD RLM V+T YL G
Sbjct: 570 IVRYKARLVAQGFSQRPGFDYDETYSPVVDAITFRYLVSFAVHEKLDMRLMDVVTAYLYG 629

Query: 464 NLDSEIHMKI 493
           NL+++I+M+I
Sbjct: 630 NLENDIYMRI 639



 Score = 72.0 bits (175), Expect(2) = 2e-31
 Identities = 35/75 (46%), Positives = 52/75 (69%), Gaps = 3/75 (4%)
 Frame = +3

Query: 504 GFNLTQ---NKYRNTHCNR*KRVMCGLK*YERMWYNMLREYISREGYDNNSICPCMFIKK 674
           GFN+ +   +  +N +  + +R + GLK   RMWYN L E +++EGY N+ ICPC+FIKK
Sbjct: 642 GFNMPEACKSNPKNIYSIKLQRSLYGLKQSGRMWYNRLNECLTKEGYTNDPICPCVFIKK 701

Query: 675 FLNGFVILAVYVDNI 719
             + FVI+AVYVD++
Sbjct: 702 NGSNFVIIAVYVDDL 716