BLASTX nr result

ID: Ophiopogon22_contig00006000 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00006000
         (492 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020255725.1| eukaryotic translation initiation factor 3 s...    66   1e-09
gb|PKU61032.1| Eukaryotic translation initiation factor 3 subuni...    60   2e-07
ref|XP_020693484.1| eukaryotic translation initiation factor 3 s...    60   3e-07
ref|XP_020584712.1| eukaryotic translation initiation factor 3 s...    57   2e-06

>ref|XP_020255725.1| eukaryotic translation initiation factor 3 subunit C [Asparagus
            officinalis]
 gb|ONK74068.1| uncharacterized protein A4U43_C03F2450 [Asparagus officinalis]
          Length = 926

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 33/38 (86%), Positives = 36/38 (94%)
 Frame = -1

Query: 396  QDAYGSSGRTAYQSGSAARASQMDSSGRMVSLNKGGRI 283
            QDAYGSSGR+ YQSGSAARA+QMDSSGRMVSL+KG RI
Sbjct: 889  QDAYGSSGRSHYQSGSAARAAQMDSSGRMVSLSKGVRI 926


>gb|PKU61032.1| Eukaryotic translation initiation factor 3 subunit C [Dendrobium
           catenatum]
          Length = 316

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 30/39 (76%), Positives = 34/39 (87%), Gaps = 1/39 (2%)
 Frame = -1

Query: 396 QDAYGSSG-RTAYQSGSAARASQMDSSGRMVSLNKGGRI 283
           QDAYGS+G RT YQSGS+AR SQ+D +GRMVSLNK GRI
Sbjct: 277 QDAYGSTGGRTPYQSGSSARGSQIDGAGRMVSLNKAGRI 315


>ref|XP_020693484.1| eukaryotic translation initiation factor 3 subunit C-like [Dendrobium
            catenatum]
          Length = 942

 Score = 59.7 bits (143), Expect = 3e-07
 Identities = 30/39 (76%), Positives = 34/39 (87%), Gaps = 1/39 (2%)
 Frame = -1

Query: 396  QDAYGSSG-RTAYQSGSAARASQMDSSGRMVSLNKGGRI 283
            QDAYGS+G RT YQSGS+AR SQ+D +GRMVSLNK GRI
Sbjct: 903  QDAYGSTGGRTPYQSGSSARGSQIDGAGRMVSLNKAGRI 941


>ref|XP_020584712.1| eukaryotic translation initiation factor 3 subunit C-like
           [Phalaenopsis equestris]
          Length = 322

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 30/40 (75%), Positives = 32/40 (80%), Gaps = 2/40 (5%)
 Frame = -1

Query: 396 QDAYGSS--GRTAYQSGSAARASQMDSSGRMVSLNKGGRI 283
           QDAYGSS  GR  YQSGS+AR SQ+D  GRMVSLNK GRI
Sbjct: 282 QDAYGSSTGGRATYQSGSSARGSQIDGVGRMVSLNKVGRI 321


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