BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon22_contig00005670
         (1094 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PPD98036.1| hypothetical protein GOBAR_DD04975 [Gossypium bar...   158   3e-64
ref|WP_105280124.1| hypothetical protein [Escherichia coli] >gi|...   160   2e-58
ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024...   137   5e-57
gb|PHT40240.1| Retrovirus-related Pol polyprotein from transposo...   132   2e-56
gb|ABG22121.1| polyprotein, partial [Solanum melongena]               159   8e-56
gb|PRQ16639.1| putative RNA-directed DNA polymerase [Rosa chinen...   142   4e-55
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711...   137   6e-55
gb|ABG22123.1| polyprotein, partial [Prunus avium]                    173   2e-54
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   135   1e-53
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                             128   2e-52
gb|KYP38863.1| Retrovirus-related Pol polyprotein from transposo...   135   4e-52
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        129   8e-52
gb|AFB73911.1| polyprotein [Citrus sinensis]                          127   8e-52
gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposo...   124   1e-51
gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposo...   124   1e-51
gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposo...   124   2e-51
gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposo...   124   2e-51
gb|KYP38095.1| Retrovirus-related Pol polyprotein from transposo...   124   2e-51
gb|OMO73383.1| Integrase, catalytic core [Corchorus capsularis]       131   9e-51
ref|XP_010068565.1| PREDICTED: MDIS1-interacting receptor like k...   139   1e-50

>gb|PPD98036.1| hypothetical protein GOBAR_DD04975 [Gossypium barbadense]
          Length = 1034

 Score =  158 bits (400), Expect(4) = 3e-64
 Identities = 86/152 (56%), Positives = 108/152 (71%), Gaps = 2/152 (1%)
 Frame = -2

Query: 580  TQAVSVVSRYMHYPRKGHCVATR*ISRYIKGIVDVDLVY-QDTNEKQECTEYVDSDYTGD 404
            +QAVS+VSRYMH P KGH  A + I RYI   +D+ L++ QDT   +    YVDSDY GD
Sbjct: 820  SQAVSIVSRYMHNPGKGHWQAVKWILRYIHKTMDIGLLFKQDTTLGKCVVGYVDSDYAGD 879

Query: 403  LDKR-STAEYVFTVIQASVCCRCTLQSTMALSVTETEYMAMTEAIKEAIWLRGWLDDLGV 227
            LDKR ST  YVFT+    +  + TLQST+ALS TE EYMA+TEA+KEAIWL+G +  LG+
Sbjct: 880  LDKRRSTTGYVFTLAGGPISWKSTLQSTVALSTTEAEYMAVTEAVKEAIWLQGMVKTLGL 939

Query: 226  DQDFTEIRCDSKSAICLANNHVYPSRTKHINV 131
             Q+   + CDS+SAI LA N VY +RTKHI+V
Sbjct: 940  VQEHFNVYCDSQSAIHLAKNQVYHARTKHIDV 971



 Score = 85.5 bits (210), Expect(4) = 3e-64
 Identities = 46/95 (48%), Positives = 58/95 (61%)
 Frame = -3

Query: 981 YKILKSGELIYLLLYVDDMFIASKSKTTIDELKVQLYAEFKMKDHGEVKKILGTEIVRDK 802
           +K L+ G  +YLLLYVDDM IASKSK  I+ LK QL  EF+MKD GE KKILG EI RD+
Sbjct: 683 FKKLQEGFFVYLLLYVDDMLIASKSKVEIERLKTQLNLEFEMKDLGEAKKILGMEICRDR 742

Query: 801 AKEKVSXXXXXXXXXXXXXYNIGSDTKTVNVPYSA 697
           A  +VS             + +   TK V+ P ++
Sbjct: 743 AHGRVSLSQKQYLKKILQKFGMNEQTKAVSTPLAS 777



 Score = 36.6 bits (83), Expect(4) = 3e-64
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -1

Query: 707 LTRHFKLSTKLF--LKTIEKRMSHVSFASDVSCLMYVMVCTRAD 582
           L  HFKLS +L     T ++ M  V +++ V  LMY MVCTR D
Sbjct: 775 LASHFKLSAQLSPSTNTEQEYMLQVPYSNAVGSLMYAMVCTRPD 818



 Score = 36.6 bits (83), Expect(4) = 3e-64
 Identities = 16/34 (47%), Positives = 25/34 (73%)
 Frame = -1

Query: 128  YYFVRDAHEKGDIDVVKIHTKDNPADMLTKVVSR 27
            ++FVR+  ++G I + KI T DN ADM+TKV+ +
Sbjct: 973  FHFVREIIDEGKIHLQKIKTADNLADMMTKVLKK 1006


>ref|WP_105280124.1| hypothetical protein [Escherichia coli]
 gb|PPY92730.1| hypothetical protein C5P31_25790 [Escherichia coli]
          Length = 326

 Score =  160 bits (406), Expect(3) = 2e-58
 Identities = 91/172 (52%), Positives = 116/172 (67%), Gaps = 4/172 (2%)
 Frame = -2

Query: 634 LPVMLVVSCMLWSVL---GQTTQAVSVVSRYMHYPRKGHCVATR*ISRYIKGIVDVDLVY 464
           +P   VV  ++++++      +QAV V+SRYMH P K H  A + I RYI   VDV LV+
Sbjct: 119 VPYANVVGSLMYAMVCTRPDISQAVGVISRYMHNPGKEHWQAVKWILRYIHNTVDVGLVF 178

Query: 463 QDTNEKQECTEYVDSDYTGDLDKR-STAEYVFTVIQASVCCRCTLQSTMALSVTETEYMA 287
           +   + Q    Y DSD+ GDLDKR ST  YVFT  +A V  + TLQST+ALS TE EYMA
Sbjct: 179 EQ-EDNQSVVGYCDSDFAGDLDKRRSTTGYVFTFAKAPVSWKSTLQSTVALSTTEAEYMA 237

Query: 286 MTEAIKEAIWLRGWLDDLGVDQDFTEIRCDSKSAICLANNHVYPSRTKHINV 131
           +TEA+KEAIWL+G L +LGV+Q    I CDS+SAI LA N VY +RTKHI+V
Sbjct: 238 ITEAVKEAIWLQGLLKELGVEQKSITIFCDSQSAIQLAKNQVYHARTKHIDV 289



 Score = 85.5 bits (210), Expect(3) = 2e-58
 Identities = 50/120 (41%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
 Frame = -3

Query: 987 VYYKILKSGELIYLLLYVDDMFIASKSKTTIDELKVQLYAEFKMKDHGEVKKILGTEIVR 808
           +Y   L  G  +YLLLYVDDM IASK+   ID+LK+QL  EF+MKD GE KKILG EI+R
Sbjct: 1   MYLCKLNDGSFVYLLLYVDDMLIASKNSEEIDKLKIQLKKEFEMKDLGEAKKILGMEIIR 60

Query: 807 DKAKEKVSXXXXXXXXXXXXXYNIGSDTKTVNVPYSAFQAFDKAIS---EDDREAYVSRI 637
           D+  +K+              + I   TK V+ P ++       +S   E +RE Y+S++
Sbjct: 61  DRRSKKLCLSQKEYLKRVLQRFGIDDKTKPVSTPLASHFKLSTTMSPMDEAERE-YMSKV 119



 Score = 30.8 bits (68), Expect(3) = 2e-58
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 7/36 (19%)
 Frame = -1

Query: 128 YYFVRDAHEKGDIDVVKIHTKDN-------PADMLT 42
           Y+FVR+  E+G I V KIHT +N       PA  LT
Sbjct: 291 YHFVREIIEEGGITVKKIHTTENQLQTDCLPAQKLT 326


>ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024343 [Solanum pennellii]
          Length = 1892

 Score =  137 bits (345), Expect(4) = 5e-57
 Identities = 77/150 (51%), Positives = 102/150 (68%), Gaps = 1/150 (0%)
 Frame = -2

Query: 577  QAVSVVSRYMHYPRKGHCVATR*ISRYIKGIVDVDLVYQDTNEKQECTEYVDSDYTGDLD 398
            Q+VSVVS+YM  P K H  A + I RY+KG  DV L ++ + E      YVDSDY GDLD
Sbjct: 1697 QSVSVVSKYMANPGKRHWEAVKWILRYLKGAPDVGLTFRKS-EGISILGYVDSDYAGDLD 1755

Query: 397  KR-STAEYVFTVIQASVCCRCTLQSTMALSVTETEYMAMTEAIKEAIWLRGWLDDLGVDQ 221
            +R ST  Y+FT++ ++V  + TLQS +ALS TE EYMA TEA+KEAIWL+G + +L   Q
Sbjct: 1756 RRRSTTGYIFTLVGSAVSWKSTLQSIVALSTTEAEYMAATEAVKEAIWLKGLVAELSSAQ 1815

Query: 220  DFTEIRCDSKSAICLANNHVYPSRTKHINV 131
              + ++CDS+SAI L  N  +  RTKHI+V
Sbjct: 1816 LKSILKCDSQSAIHLIKNQRFHERTKHIDV 1845



 Score = 63.9 bits (154), Expect(4) = 5e-57
 Identities = 35/64 (54%), Positives = 42/64 (65%)
 Frame = -3

Query: 996  DP*VYYKILKSGELIYLLLYVDDMFIASKSKTTIDELKVQLYAEFKMKDHGEVKKILGTE 817
            D  VY+K +    +IYLLLYVDDM IA+ + T I+ LK  L  EF MKD G  KKILG E
Sbjct: 1557 DSCVYHKKMSGNSMIYLLLYVDDMLIAANNITEINILKKLLSKEFDMKDLGVAKKILGME 1616

Query: 816  IVRD 805
            I R+
Sbjct: 1617 ISRE 1620



 Score = 53.1 bits (126), Expect(4) = 5e-57
 Identities = 24/42 (57%), Positives = 30/42 (71%)
 Frame = -1

Query: 128  YYFVRDAHEKGDIDVVKIHTKDNPADMLTKVVSRVKFDHCKN 3
            ++F+RD  EKG I V K+ T DN ADMLTK+V   KF HCK+
Sbjct: 1847 FHFIRDVVEKGAIKVEKVITDDNAADMLTKIVPLAKFAHCKD 1888



 Score = 38.5 bits (88), Expect(4) = 5e-57
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -1

Query: 707  LTRHFKLSTKLFLKTIEK--RMSHVSFASDVSCLMYVMVCTRADNTSSECGVS 555
            L  HFKLS     +++++   MS V +AS V  +MY MVCTR D   S   VS
Sbjct: 1651 LASHFKLSELQMPQSMDEVEHMSKVPYASAVGSIMYAMVCTRPDIAQSVSVVS 1703


>gb|PHT40240.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Capsicum
            baccatum]
          Length = 1526

 Score =  132 bits (333), Expect(3) = 2e-56
 Identities = 72/174 (41%), Positives = 111/174 (63%), Gaps = 5/174 (2%)
 Frame = -2

Query: 637  HLPVMLVVSCMLWSVL---GQTTQAVSVVSRYMHYPRKGHCVATR*ISRYIKGIVDVDLV 467
            H+P    V  ++++++        AVSVVSR+MH P K H  + + I RY+KG  D+ LV
Sbjct: 769  HVPYSNAVGSLMYAMVCTRPDLAYAVSVVSRFMHNPGKQHWESVKWILRYLKGSPDIGLV 828

Query: 466  Y-QDTNEKQECTEYVDSDYTGDLDKR-STAEYVFTVIQASVCCRCTLQSTMALSVTETEY 293
            + +  ++      YVD+DY GDLD+R S + Y+FT+  +++    +LQ+  ALS TE EY
Sbjct: 829  FDRQRSDPGGVVGYVDADYGGDLDRRRSLSAYIFTLCGSAISWYSSLQAIAALSTTEAEY 888

Query: 292  MAMTEAIKEAIWLRGWLDDLGVDQDFTEIRCDSKSAICLANNHVYPSRTKHINV 131
            +A TE +KEAIWLRG + +LG+ Q    + CDS++A+ LA N  + S+TKHI++
Sbjct: 889  IAATEGVKEAIWLRGLVAELGLQQHILVMFCDSQTAVHLARNRKHHSKTKHIDI 942



 Score = 83.2 bits (204), Expect(3) = 2e-56
 Identities = 47/101 (46%), Positives = 61/101 (60%)
 Frame = -3

Query: 999 HDP*VYYKILKSGELIYLLLYVDDMFIASKSKTTIDELKVQLYAEFKMKDHGEVKKILGT 820
           +D  VY++ L  G L+YLLLYVDDM IA++ KT +D+LKVQL +EF MKD G  KKILG 
Sbjct: 649 YDNCVYFQKLSDGSLVYLLLYVDDMLIAARDKTLVDKLKVQLNSEFDMKDLGPAKKILGM 708

Query: 819 EIVRDKAKEKVSXXXXXXXXXXXXXYNIGSDTKTVNVPYSA 697
           EI RD+   K+              + +  D K VN P +A
Sbjct: 709 EINRDRQAGKLFLSQKKYVMKMLDRFGM-RDCKAVNTPLAA 748



 Score = 54.3 bits (129), Expect(3) = 2e-56
 Identities = 25/43 (58%), Positives = 31/43 (72%)
 Frame = -1

Query: 137  KCAYYFVRDAHEKGDIDVVKIHTKDNPADMLTKVVSRVKFDHC 9
            KC  +F+RD  + G+I V KIHT +NPADMLTK +   KFDHC
Sbjct: 943  KC--HFIRDIVDAGEITVEKIHTTENPADMLTKPLPAAKFDHC 983


>gb|ABG22121.1| polyprotein, partial [Solanum melongena]
          Length = 361

 Score =  159 bits (402), Expect(2) = 8e-56
 Identities = 86/152 (56%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
 Frame = -2

Query: 580 TQAVSVVSRYMHYPRKGHCVATR*ISRYIKGIVDVDLVYQDTNEKQECTE-YVDSDYTGD 404
           +QAVSVVSRYMH P KGH  A + I RYIK  VD+ LV++       C   Y DSDY GD
Sbjct: 209 SQAVSVVSRYMHDPGKGHWQAVKWILRYIKNTVDIGLVFEQDKSLGSCVVGYCDSDYAGD 268

Query: 403 LDKR-STAEYVFTVIQASVCCRCTLQSTMALSVTETEYMAMTEAIKEAIWLRGWLDDLGV 227
           LDKR ST  Y+FT+ +  V  + TLQ+T+ALS TE EYMA+TEA+KEAIWL G L++LGV
Sbjct: 269 LDKRRSTTGYLFTLAKGPVSWKSTLQATVALSTTEAEYMAITEAVKEAIWLHGLLEELGV 328

Query: 226 DQDFTEIRCDSKSAICLANNHVYPSRTKHINV 131
            Q    +  DS+SAI LA N V+ +RTKHI+V
Sbjct: 329 GQKHLMVHSDSQSAIHLAKNQVFHARTKHIDV 360



 Score = 88.2 bits (217), Expect(2) = 8e-56
 Identities = 49/123 (39%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
 Frame = -3

Query: 999 HDP*VYYKILKSGELIYLLLYVDDMFIASKSKTTIDELKVQLYAEFKMKDHGEVKKILGT 820
           +D  VY+  L++G  +YLLLYVDDM IA+KS+  ID LK QL  EF+MKD GE KKILG 
Sbjct: 66  YDHCVYFHKLQNGSYVYLLLYVDDMLIAAKSQFEIDRLKAQLSKEFEMKDLGEAKKILGM 125

Query: 819 EIVRDKAKEKVSXXXXXXXXXXXXXYNIGSDTKTVNVPYSAFQAFDKAIS--EDDREAYV 646
           EI RD+ + K+              + I  D+K V+ P +        +S   D+   Y+
Sbjct: 126 EISRDRQRGKLCLTQKQYLKKVLQRFGINDDSKPVSTPLAPHLKLSSQLSPKTDEEREYM 185

Query: 645 SRI 637
           +++
Sbjct: 186 AKV 188


>gb|PRQ16639.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 502

 Score =  142 bits (359), Expect(3) = 4e-55
 Identities = 78/172 (45%), Positives = 108/172 (62%), Gaps = 4/172 (2%)
 Frame = -2

Query: 634 LPVMLVVSCMLWSVL---GQTTQAVSVVSRYMHYPRKGHCVATR*ISRYIKGIVDVDLVY 464
           +P    V C++++++       QA+SVVS+YM  P K H  A + I RY+KG   + +++
Sbjct: 281 VPYASAVGCLMYAMICTRPDLAQALSVVSKYMSNPGKPHWEAVKWILRYLKGTRQLGIMF 340

Query: 463 QDTNEKQECTEYVDSDYTGDLDKR-STAEYVFTVIQASVCCRCTLQSTMALSVTETEYMA 287
           +   E      +VD+DY GDLDKR ST  YVFT     V  + TLQ+  ALS TE EYMA
Sbjct: 341 ERKQEVACVAGFVDADYAGDLDKRRSTTGYVFTCGGGPVSWKSTLQAVTALSTTEAEYMA 400

Query: 286 MTEAIKEAIWLRGWLDDLGVDQDFTEIRCDSKSAICLANNHVYPSRTKHINV 131
           +TEA KEAIWL G   + G+ Q+   ++CDS+SAI LA N V+ +RTKHI+V
Sbjct: 401 LTEASKEAIWLNGLASEFGIHQEGVVVKCDSQSAIHLAKNQVFHARTKHIDV 452



 Score = 75.1 bits (183), Expect(3) = 4e-55
 Identities = 44/102 (43%), Positives = 59/102 (57%)
 Frame = -3

Query: 1002 LHDP*VYYKILKSGELIYLLLYVDDMFIASKSKTTIDELKVQLYAEFKMKDHGEVKKILG 823
            L+D  VYY + + GE+I LLLYVDDM IA K  + I+ELK +L AEF MKD G  + ILG
Sbjct: 159  LYDCCVYYHVFEDGEIILLLLYVDDMLIACKDMSKIEELKKKLGAEFDMKDLGAAQNILG 218

Query: 822  TEIVRDKAKEKVSXXXXXXXXXXXXXYNIGSDTKTVNVPYSA 697
             EI RD+   K+              +N+    K V++P +A
Sbjct: 219  IEIRRDRKAGKIWLSQEKYILRVLERFNM-DGAKVVSIPLAA 259



 Score = 48.1 bits (113), Expect(3) = 4e-55
 Identities = 23/42 (54%), Positives = 28/42 (66%)
 Frame = -1

Query: 128 YYFVRDAHEKGDIDVVKIHTKDNPADMLTKVVSRVKFDHCKN 3
           Y+ +RD  E G+I V K+HT DN AD LTK V+  KF HC N
Sbjct: 454 YHRIRDWVESGNIIVEKVHTNDNAADCLTKPVAVEKFKHCLN 495


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
 gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  137 bits (345), Expect(4) = 6e-55
 Identities = 76/149 (51%), Positives = 97/149 (65%), Gaps = 1/149 (0%)
 Frame = -2

Query: 574  AVSVVSRYMHYPRKGHCVATR*ISRYIKGIVDVDLVYQDTNEKQECTEYVDSDYTGDLD- 398
            AVSVVSR+M  P + H  A + I RY++G  DV L+Y    +    T Y DSDY GD+D 
Sbjct: 1113 AVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCL-VTGYSDSDYAGDVDT 1171

Query: 397  KRSTAEYVFTVIQASVCCRCTLQSTMALSVTETEYMAMTEAIKEAIWLRGWLDDLGVDQD 218
            +RS   YVFT+  + V  + TLQ T+ LS TE EYMA+TEA KE IWL+G + DLG+  D
Sbjct: 1172 RRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLHHD 1231

Query: 217  FTEIRCDSKSAICLANNHVYPSRTKHINV 131
               + CDS SAICLA + V+  RTKHI+V
Sbjct: 1232 QATVYCDSLSAICLAKDQVHHERTKHIDV 1260



 Score = 75.9 bits (185), Expect(4) = 6e-55
 Identities = 49/124 (39%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
 Frame = -3

Query: 999  HDP*VYYKILKSGELIYLLLYVDDMFIASKSKTTIDELKVQLYAEFKMKDHGEVKKILGT 820
            +D  VYY  L     IYL+LYVDDM IA+K K  I +LK  L AEF+MKD G  +KILG 
Sbjct: 969  YDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGM 1028

Query: 819  EIVRDKAKEKVSXXXXXXXXXXXXXYNIGSDTKTVNVPYSA---FQAFDKAISEDDREAY 649
            EI+RD+ + K+              + + S +K ++ P +A     A     SE+++E Y
Sbjct: 1029 EIIRDRERRKLFLSQRSYIQKVLARFGM-SSSKPIDTPSAANIHLTAMFAPQSEEEKE-Y 1086

Query: 648  VSRI 637
            +SR+
Sbjct: 1087 MSRV 1090



 Score = 40.0 bits (92), Expect(4) = 6e-55
 Identities = 20/40 (50%), Positives = 24/40 (60%)
 Frame = -1

Query: 128  YYFVRDAHEKGDIDVVKIHTKDNPADMLTKVVSRVKFDHC 9
            Y+F+R       I V K+ T DNPADM TK V + KF HC
Sbjct: 1262 YHFLRSEKR---IKVKKVGTADNPADMFTKPVPQSKFQHC 1298



 Score = 32.7 bits (73), Expect(4) = 6e-55
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = -1

Query: 650  MSHVSFASDVSCLMYVMVCTRAD 582
            MS V +AS V  LMY MVCTR D
Sbjct: 1087 MSRVPYASAVGSLMYAMVCTRPD 1109


>gb|ABG22123.1| polyprotein, partial [Prunus avium]
          Length = 276

 Score =  173 bits (438), Expect(2) = 2e-54
 Identities = 93/152 (61%), Positives = 110/152 (72%), Gaps = 2/152 (1%)
 Frame = -2

Query: 580 TQAVSVVSRYMHYPRKGHCVATR*ISRYIKGIVDVDLVYQDTNEKQECTE-YVDSDYTGD 404
           +QAVS+VSRYMH P KGH  A + I RYI G VDV L++Q      +C   YVDSDY GD
Sbjct: 124 SQAVSIVSRYMHNPGKGHWQAVKWILRYILGTVDVGLLFQQDKVSGQCVVGYVDSDYAGD 183

Query: 403 LDKR-STAEYVFTVIQASVCCRCTLQSTMALSVTETEYMAMTEAIKEAIWLRGWLDDLGV 227
           LDKR ST  +VFT+    V  R  LQST+ALS TE EYMA+TEAIKEAIWL+G LDDLGV
Sbjct: 184 LDKRRSTTGFVFTIAGGPVSWRSILQSTVALSTTEAEYMAVTEAIKEAIWLQGLLDDLGV 243

Query: 226 DQDFTEIRCDSKSAICLANNHVYPSRTKHINV 131
            QD  ++ CDS+SAI LA N V+ +RTKHI+V
Sbjct: 244 QQDHVDVYCDSQSAIYLAKNQVHHARTKHIDV 275



 Score = 69.7 bits (169), Expect(2) = 2e-54
 Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
 Frame = -3

Query: 939 YVDDMFIASKSKTTIDELKVQLYAEFKMKDHGEVKKILGTEIVRDKAKEKVSXXXXXXXX 760
           YVDDM I  KSK  I+ LK QL  EF+MKD GE +KILG EI RD+AK K+S        
Sbjct: 1   YVDDMLIVCKSKVEIERLKTQLSNEFEMKDLGEARKILGMEIERDRAKGKISLCQKQYLK 60

Query: 759 XXXXXYNIGSDTKTVNVPYSAFQAFDKAIS--EDDREAYVSRI 637
                + +  ++K V+ P +       ++S   D+   Y+++I
Sbjct: 61  KVLQRFGMNENSKPVSTPLAPHFKLSASMSPNTDEESHYMAQI 103


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  135 bits (340), Expect(4) = 1e-53
 Identities = 73/149 (48%), Positives = 96/149 (64%), Gaps = 1/149 (0%)
 Frame = -2

Query: 574  AVSVVSRYMHYPRKGHCVATR*ISRYIKGIVDVDLVYQDTNEKQECTEYVDSDYTGDLDK 395
            AVSVVSR+M  P K H  A + I RY+KG   V LVY + +       + DSD+ GDL K
Sbjct: 1437 AVSVVSRFMSNPGKAHWEAVKWIMRYLKGSSSVCLVYGNGDVSSGLVGFTDSDHGGDLMK 1496

Query: 394  R-STAEYVFTVIQASVCCRCTLQSTMALSVTETEYMAMTEAIKEAIWLRGWLDDLGVDQD 218
            R S   Y+FT+   ++  R +LQ T+ALS TE EYM++TE +KE +WL G+L  LG++  
Sbjct: 1497 RRSLTCYIFTLFGCAISWRASLQPTVALSTTEAEYMSLTEGVKEGMWLNGFLGSLGLNLS 1556

Query: 217  FTEIRCDSKSAICLANNHVYPSRTKHINV 131
               I CDS+SA+CLA N VY  RTKHI+V
Sbjct: 1557 KPVIYCDSQSALCLAKNPVYHERTKHIDV 1585



 Score = 75.1 bits (183), Expect(4) = 1e-53
 Identities = 38/66 (57%), Positives = 48/66 (72%)
 Frame = -3

Query: 999  HDP*VYYKILKSGELIYLLLYVDDMFIASKSKTTIDELKVQLYAEFKMKDHGEVKKILGT 820
            +D  VY+K L  G  IYLLLYVDDM IA+K++  I++LK  L +EF+MKD G  KKILG 
Sbjct: 1293 YDSCVYFKTLPDGSFIYLLLYVDDMLIAAKNRAEINKLKQLLSSEFEMKDLGAAKKILGM 1352

Query: 819  EIVRDK 802
            EI RD+
Sbjct: 1353 EIWRDR 1358



 Score = 37.7 bits (86), Expect(4) = 1e-53
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = -1

Query: 122  FVRDAHEKGDIDVVKIHTKDNPADMLTKVVSRVKFDH 12
            F+RD  E+    + K+ T+ NPADMLTK ++  KF H
Sbjct: 1589 FIRDVIEEKLFSIEKVATEVNPADMLTKPITTEKFKH 1625



 Score = 33.5 bits (75), Expect(4) = 1e-53
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 707  LTRHFKLSTKLFLKTIEK--RMSHVSFASDVSCLMYVMVCTRAD 582
            L +HFK        T E+   M  V ++S V  LMY MVCTR D
Sbjct: 1390 LAQHFKFDHSTLPSTDEEVEYMKSVPYSSVVGSLMYAMVCTRPD 1433


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  128 bits (321), Expect(4) = 2e-52
 Identities = 76/150 (50%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
 Frame = -2

Query: 577  QAVSVVSRYMHYPRKGHCVATR*ISRYIKGIVDVDLVYQDTNEKQECTEYVDSDYTGDLD 398
            QAV VVSRYM  P + H    + I RYIKG  DV L Y  ++       YVDSDY GDLD
Sbjct: 1101 QAVGVVSRYMANPGREHWNCVKRILRYIKGTSDVALCYGGSDFI--INGYVDSDYAGDLD 1158

Query: 397  K-RSTAEYVFTVIQASVCCRCTLQSTMALSVTETEYMAMTEAIKEAIWLRGWLDDLGVDQ 221
            K +ST  YVF V   +V     LQ+ +A S TE EY+A T+A KEAIWL+  L++LG  Q
Sbjct: 1159 KSKSTTGYVFKVAGGAVSWVSKLQAVVATSTTEAEYVAATQASKEAIWLKMLLEELGHKQ 1218

Query: 220  DFTEIRCDSKSAICLANNHVYPSRTKHINV 131
            +F  + CDS+SA+ LA N  + SRTKHI V
Sbjct: 1219 EFVSLFCDSQSALHLARNPAFHSRTKHIRV 1248



 Score = 70.5 bits (171), Expect(4) = 2e-52
 Identities = 35/70 (50%), Positives = 43/70 (61%)
 Frame = -3

Query: 996  DP*VYYKILKSGELIYLLLYVDDMFIASKSKTTIDELKVQLYAEFKMKDHGEVKKILGTE 817
            DP  Y+K       + LLLYVDDM +A  +K  IDELK QL  EF+MKD G   KILG +
Sbjct: 959  DPCAYFKRFGKDNFVILLLYVDDMLVAGPNKDHIDELKAQLAREFEMKDLGPANKILGMQ 1018

Query: 816  IVRDKAKEKV 787
            I RD+   K+
Sbjct: 1019 IHRDRGNRKI 1028



 Score = 47.8 bits (112), Expect(4) = 2e-52
 Identities = 19/42 (45%), Positives = 31/42 (73%)
 Frame = -1

Query: 128  YYFVRDAHEKGDIDVVKIHTKDNPADMLTKVVSRVKFDHCKN 3
            Y+F+R+  ++G +D+ KIHT DN AD LTK+++  KF  C++
Sbjct: 1250 YHFIREKVKEGTVDLQKIHTADNVADFLTKIINVDKFTWCRS 1291



 Score = 31.2 bits (69), Expect(4) = 2e-52
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 698  HFKLSTKLFLKTIEKRM--SHVSFASDVSCLMYVMVCTRAD 582
            + K+S+ +     E RM  S V +AS V  LM+ M+CTR D
Sbjct: 1058 NLKVSSSMSPSNEEGRMEMSRVPYASAVGSLMFAMICTRPD 1098


>gb|KYP38863.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 390

 Score =  135 bits (341), Expect(4) = 4e-52
 Identities = 75/149 (50%), Positives = 97/149 (65%), Gaps = 1/149 (0%)
 Frame = -2

Query: 574 AVSVVSRYMHYPRKGHCVATR*ISRYIKGIVDVDLVYQDTNEKQECTEYVDSDYTGDLD- 398
           AVSVVSRY++ P+K H  A + I R ++G  D+ L+Y   N       Y D+DY  DLD 
Sbjct: 195 AVSVVSRYLNQPQKEHWQAVKRIFRNLRGTSDIGLIY-GANTNCCLAGYSDADYAADLDG 253

Query: 397 KRSTAEYVFTVIQASVCCRCTLQSTMALSVTETEYMAMTEAIKEAIWLRGWLDDLGVDQD 218
           ++S   Y FT+    V  + TLQS++ALS TE EYMA+TEA KE IWL+G + DLGV Q+
Sbjct: 254 RKSITGYAFTLKSYLVSWKATLQSSVALSTTEAEYMALTEAAKEGIWLKGLISDLGVKQE 313

Query: 217 FTEIRCDSKSAICLANNHVYPSRTKHINV 131
              I CDS SAICLA + V+  RTKHI+V
Sbjct: 314 HALIFCDSLSAICLAKDQVHHERTKHIDV 342



 Score = 73.6 bits (179), Expect(4) = 4e-52
 Identities = 37/71 (52%), Positives = 52/71 (73%)
 Frame = -3

Query: 999 HDP*VYYKILKSGELIYLLLYVDDMFIASKSKTTIDELKVQLYAEFKMKDHGEVKKILGT 820
           +D  VY+K ++ G +IYLLLYVDD+ IA+K+K+ I  LK  L  EF MK+ G  KKILG 
Sbjct: 51  YDCCVYHKKVEDGFMIYLLLYVDDILIAAKNKSEIQNLKALLSGEFDMKNLGAAKKILGM 110

Query: 819 EIVRDKAKEKV 787
           EI RD++++K+
Sbjct: 111 EIYRDRSQKKL 121



 Score = 35.4 bits (80), Expect(4) = 4e-52
 Identities = 17/28 (60%), Positives = 18/28 (64%)
 Frame = -1

Query: 92  IDVVKIHTKDNPADMLTKVVSRVKFDHC 9
           I V KI T  NPADM TK V + KF HC
Sbjct: 353 IKVQKIDTLHNPADMFTKFVPKSKFFHC 380



 Score = 31.6 bits (70), Expect(4) = 4e-52
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
 Frame = -1

Query: 755 CSKNIILAVTRKL*MFLTRHFK--LSTKLFLKTIEKRMSH--------VSFASDVSCLMY 606
           C K+ I  +  +  M   +     +S K  LK + + +S         V +AS V  LMY
Sbjct: 124 CQKDYIQKILHRFGMHNAKPLSTPMSVKEKLKNVAQTLSQTEQNNVLQVPYASAVGSLMY 183

Query: 605 VMVCTRAD 582
            MVCTR D
Sbjct: 184 TMVCTRPD 191


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  129 bits (325), Expect(4) = 8e-52
 Identities = 71/150 (47%), Positives = 101/150 (67%), Gaps = 2/150 (1%)
 Frame = -2

Query: 574  AVSVVSRYMHYPRKGHCVATR*ISRYIKGIVDVDLVYQDT-NEKQECTEYVDSDYTGDLD 398
            AVSVVSRY+  P K H  A + I RY+KG     L+Y  T ++K E   +VDSD+ GDLD
Sbjct: 1133 AVSVVSRYLSCPGKVHWNAVKWIMRYLKGSSTCGLLYGKTKSDKIEVMGFVDSDFAGDLD 1192

Query: 397  KR-STAEYVFTVIQASVCCRCTLQSTMALSVTETEYMAMTEAIKEAIWLRGWLDDLGVDQ 221
            +R ST+ Y+F +    +  + +LQS  ALS TE E++A TEA+KEA+WLRG L++L ++Q
Sbjct: 1193 RRKSTSRYMFVLNSCLISWKSSLQSGGALSSTEAEFIATTEAVKEAMWLRGLLNELWLNQ 1252

Query: 220  DFTEIRCDSKSAICLANNHVYPSRTKHINV 131
               ++ CD+++AI L  N +Y  RTKHI+V
Sbjct: 1253 KIVQVFCDNQNAIHLVKNQMYHERTKHIDV 1282



 Score = 69.7 bits (169), Expect(4) = 8e-52
 Identities = 36/67 (53%), Positives = 47/67 (70%)
 Frame = -3

Query: 999  HDP*VYYKILKSGELIYLLLYVDDMFIASKSKTTIDELKVQLYAEFKMKDHGEVKKILGT 820
            +D  VY+     G + YLLLYVDDM IASK K+ I+ LK  L AEF+MKD G  K+ILG 
Sbjct: 992  YDSCVYFGGSDQGGVAYLLLYVDDMLIASKYKSEIERLKNLLKAEFEMKDLGNAKRILGM 1051

Query: 819  EIVRDKA 799
            +I+RD++
Sbjct: 1052 DIIRDRS 1058



 Score = 44.3 bits (103), Expect(4) = 8e-52
 Identities = 21/40 (52%), Positives = 25/40 (62%)
 Frame = -1

Query: 122  FVRDAHEKGDIDVVKIHTKDNPADMLTKVVSRVKFDHCKN 3
            F+RD   KG + V KIHT  NPAD LTK +   KF+ C N
Sbjct: 1286 FIRDEVGKGTVVVSKIHTSVNPADALTKSLPTAKFEFCVN 1325



 Score = 31.6 bits (70), Expect(4) = 8e-52
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -1

Query: 695  FKLSTKLFLKTIEKRMSHVSFASDVSCLMYVMVCTRAD 582
            FKLS     +  E +M+   +A  V  LMY MVCTR+D
Sbjct: 1093 FKLSAATTSED-ESQMNEFPYAQAVGSLMYAMVCTRSD 1129


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  127 bits (319), Expect(4) = 8e-52
 Identities = 75/150 (50%), Positives = 96/150 (64%), Gaps = 1/150 (0%)
 Frame = -2

Query: 577  QAVSVVSRYMHYPRKGHCVATR*ISRYIKGIVDVDLVYQDTNEKQECTEYVDSDYTGDLD 398
            QAV VVSRYM  P   H +A + I RYI+G  DV L Y  +  +     YVDSD+ GDLD
Sbjct: 1112 QAVGVVSRYMANPGGEHWIAVKRILRYIRGTSDVALCYGGS--EFTVRGYVDSDFAGDLD 1169

Query: 397  KR-STAEYVFTVIQASVCCRCTLQSTMALSVTETEYMAMTEAIKEAIWLRGWLDDLGVDQ 221
            KR ST  YVFT+  A+V     LQ+ +ALS TE EYMA T+A K+AIW++  L++LG  Q
Sbjct: 1170 KRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKKAIWIQRLLEELGHKQ 1229

Query: 220  DFTEIRCDSKSAICLANNHVYPSRTKHINV 131
                + CDS+SA+ +A N  + SRTKHI V
Sbjct: 1230 QKILVFCDSQSALHIARNPAFHSRTKHIGV 1259



 Score = 67.8 bits (164), Expect(4) = 8e-52
 Identities = 34/66 (51%), Positives = 42/66 (63%)
 Frame = -3

Query: 984  YYKILKSGELIYLLLYVDDMFIASKSKTTIDELKVQLYAEFKMKDHGEVKKILGTEIVRD 805
            YYK  +  + I LLLYVDDM +A  +K  I ELK QL  EF+MKD G   KILG +I RD
Sbjct: 974  YYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRD 1033

Query: 804  KAKEKV 787
            +   K+
Sbjct: 1034 RNNMKI 1039



 Score = 45.8 bits (107), Expect(4) = 8e-52
 Identities = 20/37 (54%), Positives = 28/37 (75%)
 Frame = -1

Query: 128  YYFVRDAHEKGDIDVVKIHTKDNPADMLTKVVSRVKF 18
            Y+FVR+  E G +D+ KIHTK+N AD+LTK ++  KF
Sbjct: 1261 YHFVREVVEDGSVDLQKIHTKENLADVLTKPINTDKF 1297



 Score = 34.3 bits (77), Expect(4) = 8e-52
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = -1

Query: 785  VWLRKPIY-RSCSKNIILAVTRKL*MFLTRHFKLSTKLFL--KTIEKRMSHVSFASDVSC 615
            +WL +  Y +   +   +   + +   L  +FKLS+ +    +   K MS V +AS V  
Sbjct: 1039 IWLSQKNYLKKILRRFNMQDCKSISTSLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGS 1098

Query: 614  LMYVMVCTRAD 582
            LM+ M+CTR D
Sbjct: 1099 LMFAMICTRPD 1109


>gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  124 bits (312), Expect(4) = 1e-51
 Identities = 72/150 (48%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
 Frame = -2

Query: 577  QAVSVVSRYMHYPRKGHCVATR*ISRYIKGIVDVDLVYQDTNEKQECTEYVDSDYTGDLD 398
            QAV  VSR+M  P + H    + I RYIKG  DV L ++ +  +     YVDSD+ GDLD
Sbjct: 1108 QAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGS--EFVVRGYVDSDFAGDLD 1165

Query: 397  KR-STAEYVFTVIQASVCCRCTLQSTMALSVTETEYMAMTEAIKEAIWLRGWLDDLGVDQ 221
            KR ST  YVFT+   +V     LQ+ +ALS TE EYMA T+A KEAIW++  L++LG  Q
Sbjct: 1166 KRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHKQ 1225

Query: 220  DFTEIRCDSKSAICLANNHVYPSRTKHINV 131
            +   + CDS+SA+ +A N  + SRTKHI V
Sbjct: 1226 EKITVYCDSQSALHIARNPAFHSRTKHIGV 1255



 Score = 62.8 bits (151), Expect(4) = 1e-51
 Identities = 31/66 (46%), Positives = 38/66 (57%)
 Frame = -3

Query: 984  YYKILKSGELIYLLLYVDDMFIASKSKTTIDELKVQLYAEFKMKDHGEVKKILGTEIVRD 805
            YY      + I LLLYVDDM +   +K  I ELK QL  EF MKD G   KILG +I RD
Sbjct: 970  YYNRFDDNDFIILLLYVDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRD 1029

Query: 804  KAKEKV 787
            +   ++
Sbjct: 1030 RKNRRI 1035



 Score = 50.8 bits (120), Expect(4) = 1e-51
 Identities = 22/42 (52%), Positives = 32/42 (76%)
 Frame = -1

Query: 128  YYFVRDAHEKGDIDVVKIHTKDNPADMLTKVVSRVKFDHCKN 3
            Y+FVR+  E+G +D+ KIHTKDN AD++TK V+  KF  C++
Sbjct: 1257 YHFVREVVEEGKVDMQKIHTKDNIADVMTKPVNTDKFTWCRS 1298



 Score = 36.6 bits (83), Expect(4) = 1e-51
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
 Frame = -1

Query: 803  KQRRK*VWLRKPIYRSCSKNIILAVTRKL*MF--------LTRHFKLSTKLFLKTIEKRM 648
            K RR  +WL +       KN +L V R+  M         L  ++KLS+ +      +RM
Sbjct: 1031 KNRR--IWLSQ-------KNYLLKVLRRFNMQDCKPISTPLPVNYKLSSSMSPSNEAERM 1081

Query: 647  --SHVSFASDVSCLMYVMVCTRADNTSSECGVS 555
              S V +AS V  LMY M+CTR D   +   VS
Sbjct: 1082 EMSRVPYASAVGSLMYAMICTRPDIAQAVGAVS 1114


>gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score =  124 bits (310), Expect(4) = 1e-51
 Identities = 71/150 (47%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
 Frame = -2

Query: 577  QAVSVVSRYMHYPRKGHCVATR*ISRYIKGIVDVDLVYQDTNEKQECTEYVDSDYTGDLD 398
            QAV  VSR+M  P + H    + I RYIKG  DV L ++ +  +     YVDSD+ GDLD
Sbjct: 1059 QAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGS--EFFVRGYVDSDFAGDLD 1116

Query: 397  KR-STAEYVFTVIQASVCCRCTLQSTMALSVTETEYMAMTEAIKEAIWLRGWLDDLGVDQ 221
            KR ST  YVFT+   +V     LQ+ +ALS TE EYMA T+A KEAIW++  L++LG  Q
Sbjct: 1117 KRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHKQ 1176

Query: 220  DFTEIRCDSKSAICLANNHVYPSRTKHINV 131
            +   + CDS+SA+ +A N  + SRTKHI +
Sbjct: 1177 EKITVYCDSQSALHIARNPAFHSRTKHIGI 1206



 Score = 64.7 bits (156), Expect(4) = 1e-51
 Identities = 33/66 (50%), Positives = 38/66 (57%)
 Frame = -3

Query: 984  YYKILKSGELIYLLLYVDDMFIASKSKTTIDELKVQLYAEFKMKDHGEVKKILGTEIVRD 805
            YY      + I LLLYVDDM +   +K  I ELK QL  EF MKD G   KILG +I RD
Sbjct: 921  YYNRFDDNDFIILLLYVDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRD 980

Query: 804  KAKEKV 787
            K   K+
Sbjct: 981  KKDRKI 986



 Score = 50.8 bits (120), Expect(4) = 1e-51
 Identities = 22/42 (52%), Positives = 32/42 (76%)
 Frame = -1

Query: 128  YYFVRDAHEKGDIDVVKIHTKDNPADMLTKVVSRVKFDHCKN 3
            Y+FVR+  E+G +D+ KIHTKDN AD++TK V+  KF  C++
Sbjct: 1208 YHFVREVVEEGKVDMQKIHTKDNIADVMTKPVNTDKFTWCRS 1249



 Score = 35.4 bits (80), Expect(4) = 1e-51
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
 Frame = -1

Query: 803  KQRRK*VWLRKPIYRSCSKNIILAVTRKL*MF--------LTRHFKLSTKLFLKTIEKRM 648
            K+ RK +WL +       +N +L V R+  M         L  ++KLS+ +      +RM
Sbjct: 981  KKDRK-IWLSQ-------RNYLLKVLRRFNMQDCKPISTPLPVNYKLSSSMSPSNEAERM 1032

Query: 647  --SHVSFASDVSCLMYVMVCTRADNTSSECGVS 555
              S V +AS V  LMY M+CTR D   +   VS
Sbjct: 1033 EMSRVPYASAVGSLMYAMICTRPDIAQAVGAVS 1065


>gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  124 bits (310), Expect(4) = 2e-51
 Identities = 71/150 (47%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
 Frame = -2

Query: 577  QAVSVVSRYMHYPRKGHCVATR*ISRYIKGIVDVDLVYQDTNEKQECTEYVDSDYTGDLD 398
            QAV  VSR+M  P + H    + I RYIKG  DV L ++ +  +     YVDSD+ GDLD
Sbjct: 1108 QAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGS--EFFVRGYVDSDFAGDLD 1165

Query: 397  KR-STAEYVFTVIQASVCCRCTLQSTMALSVTETEYMAMTEAIKEAIWLRGWLDDLGVDQ 221
            KR ST  YVFT+   +V     LQ+ +ALS TE EYMA T+A KEAIW++  L++LG  Q
Sbjct: 1166 KRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHKQ 1225

Query: 220  DFTEIRCDSKSAICLANNHVYPSRTKHINV 131
            +   + CDS+SA+ +A N  + SRTKHI +
Sbjct: 1226 EKITVYCDSQSALHIARNPAFHSRTKHIGI 1255



 Score = 62.8 bits (151), Expect(4) = 2e-51
 Identities = 31/66 (46%), Positives = 38/66 (57%)
 Frame = -3

Query: 984  YYKILKSGELIYLLLYVDDMFIASKSKTTIDELKVQLYAEFKMKDHGEVKKILGTEIVRD 805
            YY      + I LLLYVDDM +   +K  I ELK QL  EF MKD G   KILG +I RD
Sbjct: 970  YYNRFDDNDFIILLLYVDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRD 1029

Query: 804  KAKEKV 787
            +   ++
Sbjct: 1030 RKNRRI 1035



 Score = 50.8 bits (120), Expect(4) = 2e-51
 Identities = 22/42 (52%), Positives = 32/42 (76%)
 Frame = -1

Query: 128  YYFVRDAHEKGDIDVVKIHTKDNPADMLTKVVSRVKFDHCKN 3
            Y+FVR+  E+G +D+ KIHTKDN AD++TK V+  KF  C++
Sbjct: 1257 YHFVREVVEEGKVDMQKIHTKDNIADVMTKPVNTDKFTWCRS 1298



 Score = 36.6 bits (83), Expect(4) = 2e-51
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
 Frame = -1

Query: 803  KQRRK*VWLRKPIYRSCSKNIILAVTRKL*MF--------LTRHFKLSTKLFLKTIEKRM 648
            K RR  +WL +       KN +L V R+  M         L  ++KLS+ +      +RM
Sbjct: 1031 KNRR--IWLSQ-------KNYLLKVLRRFNMQDCKPISTPLPVNYKLSSSMSPSNEAERM 1081

Query: 647  --SHVSFASDVSCLMYVMVCTRADNTSSECGVS 555
              S V +AS V  LMY M+CTR D   +   VS
Sbjct: 1082 EMSRVPYASAVGSLMYAMICTRPDIAQAVGAVS 1114


>gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score =  124 bits (310), Expect(4) = 2e-51
 Identities = 71/150 (47%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
 Frame = -2

Query: 577  QAVSVVSRYMHYPRKGHCVATR*ISRYIKGIVDVDLVYQDTNEKQECTEYVDSDYTGDLD 398
            QAV  VSR+M  P + H    + I RYIKG  DV L ++ +  +     YVDSD+ GDLD
Sbjct: 1059 QAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGS--EFFVRGYVDSDFAGDLD 1116

Query: 397  KR-STAEYVFTVIQASVCCRCTLQSTMALSVTETEYMAMTEAIKEAIWLRGWLDDLGVDQ 221
            KR ST  YVFT+   +V     LQ+ +ALS TE EYMA T+A KEAIW++  L++LG  Q
Sbjct: 1117 KRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHKQ 1176

Query: 220  DFTEIRCDSKSAICLANNHVYPSRTKHINV 131
            +   + CDS+SA+ +A N  + SRTKHI +
Sbjct: 1177 EKITVYCDSQSALHIARNPAFHSRTKHIGI 1206



 Score = 62.8 bits (151), Expect(4) = 2e-51
 Identities = 31/66 (46%), Positives = 38/66 (57%)
 Frame = -3

Query: 984  YYKILKSGELIYLLLYVDDMFIASKSKTTIDELKVQLYAEFKMKDHGEVKKILGTEIVRD 805
            YY      + I LLLYVDDM +   +K  I ELK QL  EF MKD G   KILG +I RD
Sbjct: 921  YYNRFDDNDFIILLLYVDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRD 980

Query: 804  KAKEKV 787
            +   ++
Sbjct: 981  RKNRRI 986



 Score = 50.8 bits (120), Expect(4) = 2e-51
 Identities = 22/42 (52%), Positives = 32/42 (76%)
 Frame = -1

Query: 128  YYFVRDAHEKGDIDVVKIHTKDNPADMLTKVVSRVKFDHCKN 3
            Y+FVR+  E+G +D+ KIHTKDN AD++TK V+  KF  C++
Sbjct: 1208 YHFVREVVEEGKVDMQKIHTKDNIADVMTKPVNTDKFTWCRS 1249



 Score = 36.6 bits (83), Expect(4) = 2e-51
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
 Frame = -1

Query: 803  KQRRK*VWLRKPIYRSCSKNIILAVTRKL*MF--------LTRHFKLSTKLFLKTIEKRM 648
            K RR  +WL +       KN +L V R+  M         L  ++KLS+ +      +RM
Sbjct: 982  KNRR--IWLSQ-------KNYLLKVLRRFNMQDCKPISTPLPVNYKLSSSMSPSNEAERM 1032

Query: 647  --SHVSFASDVSCLMYVMVCTRADNTSSECGVS 555
              S V +AS V  LMY M+CTR D   +   VS
Sbjct: 1033 EMSRVPYASAVGSLMYAMICTRPDIAQAVGAVS 1065


>gb|KYP38095.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score =  124 bits (310), Expect(4) = 2e-51
 Identities = 71/150 (47%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
 Frame = -2

Query: 577  QAVSVVSRYMHYPRKGHCVATR*ISRYIKGIVDVDLVYQDTNEKQECTEYVDSDYTGDLD 398
            QAV  VSR+M  P + H    + I RYIKG  DV L ++ +  +     YVDSD+ GDLD
Sbjct: 1059 QAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGS--EFFVRGYVDSDFAGDLD 1116

Query: 397  KR-STAEYVFTVIQASVCCRCTLQSTMALSVTETEYMAMTEAIKEAIWLRGWLDDLGVDQ 221
            KR ST  YVFT+   +V     LQ+ +ALS TE EYMA T+A KEAIW++  L++LG  Q
Sbjct: 1117 KRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHKQ 1176

Query: 220  DFTEIRCDSKSAICLANNHVYPSRTKHINV 131
            +   + CDS+SA+ +A N  + SRTKHI +
Sbjct: 1177 EKITVYCDSQSALHIARNPAFHSRTKHIGI 1206



 Score = 62.8 bits (151), Expect(4) = 2e-51
 Identities = 31/66 (46%), Positives = 38/66 (57%)
 Frame = -3

Query: 984  YYKILKSGELIYLLLYVDDMFIASKSKTTIDELKVQLYAEFKMKDHGEVKKILGTEIVRD 805
            YY      + I LLLYVDDM +   +K  I ELK QL  EF MKD G   KILG +I RD
Sbjct: 921  YYNRFDDNDFIILLLYVDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRD 980

Query: 804  KAKEKV 787
            +   ++
Sbjct: 981  RKNRRI 986



 Score = 50.8 bits (120), Expect(4) = 2e-51
 Identities = 22/42 (52%), Positives = 32/42 (76%)
 Frame = -1

Query: 128  YYFVRDAHEKGDIDVVKIHTKDNPADMLTKVVSRVKFDHCKN 3
            Y+FVR+  E+G +D+ KIHTKDN AD++TK V+  KF  C++
Sbjct: 1208 YHFVREVVEEGKVDMQKIHTKDNIADVMTKPVNTDKFTWCRS 1249



 Score = 36.6 bits (83), Expect(4) = 2e-51
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
 Frame = -1

Query: 803  KQRRK*VWLRKPIYRSCSKNIILAVTRKL*MF--------LTRHFKLSTKLFLKTIEKRM 648
            K RR  +WL +       KN +L V R+  M         L  ++KLS+ +      +RM
Sbjct: 982  KNRR--IWLSQ-------KNYLLKVLRRFNMQDCKPISTPLPVNYKLSSSMSPSNEAERM 1032

Query: 647  --SHVSFASDVSCLMYVMVCTRADNTSSECGVS 555
              S V +AS V  LMY M+CTR D   +   VS
Sbjct: 1033 EMSRVPYASAVGSLMYAMICTRPDIAQAVGAVS 1065


>gb|OMO73383.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 1212

 Score =  131 bits (329), Expect(4) = 9e-51
 Identities = 72/149 (48%), Positives = 97/149 (65%), Gaps = 1/149 (0%)
 Frame = -2

Query: 574  AVSVVSRYMHYPRKGHCVATR*ISRYIKGIVDVDLVYQDTNEKQECTEYVDSDYTGD-LD 398
            AVSV+SR+M  P K H  A + I RY+ G  +V LVY  ++       YVDSDY GD + 
Sbjct: 1015 AVSVISRFMSNPGKTHWEAVKWIMRYLNGTKNVCLVY-GSDGNSGLIGYVDSDYAGDFIK 1073

Query: 397  KRSTAEYVFTVIQASVCCRCTLQSTMALSVTETEYMAMTEAIKEAIWLRGWLDDLGVDQD 218
            +RS A Y+FT+   ++  + TLQ+T+ LS TE EYM++TE IKE +WL G +D LG+D  
Sbjct: 1074 RRSLACYIFTLYGCAIRWKATLQATVVLSTTEAEYMSLTEGIKEGMWLHGLVDSLGLDVS 1133

Query: 217  FTEIRCDSKSAICLANNHVYPSRTKHINV 131
               I CDS+SA+ LA N VY  R+KHI+V
Sbjct: 1134 KPVIYCDSQSALSLAKNPVYHERSKHIDV 1162



 Score = 70.5 bits (171), Expect(4) = 9e-51
 Identities = 38/66 (57%), Positives = 44/66 (66%)
 Frame = -3

Query: 999  HDP*VYYKILKSGELIYLLLYVDDMFIASKSKTTIDELKVQLYAEFKMKDHGEVKKILGT 820
            +D  VY K L  G  IYLLLYVDDM IA+K    I+ LK  L +EF+MKD G  KKILG 
Sbjct: 871  YDNCVYSKKLSDGSYIYLLLYVDDMLIAAKDLAEINSLKALLSSEFEMKDLGAAKKILGM 930

Query: 819  EIVRDK 802
            EI RD+
Sbjct: 931  EIWRDR 936



 Score = 37.4 bits (85), Expect(4) = 9e-51
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = -1

Query: 122  FVRDAHEKGDIDVVKIHTKDNPADMLTKVVSRVKFDH 12
            F+RDA +     + KI T +NPADMLTK ++  KF H
Sbjct: 1166 FIRDALDNKVATIEKIPTANNPADMLTKPLTTDKFKH 1202



 Score = 32.7 bits (73), Expect(4) = 9e-51
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 707  LTRHFKLSTKLFLKTIEKR--MSHVSFASDVSCLMYVMVCTRAD 582
            L  HFKL       + ++   MS + ++S V  LMY MVCTR D
Sbjct: 968  LAAHFKLDASALPSSNDEVNCMSIIPYSSAVGSLMYAMVCTRPD 1011


>ref|XP_010068565.1| PREDICTED: MDIS1-interacting receptor like kinase 2 [Eucalyptus
           grandis]
          Length = 1365

 Score =  139 bits (351), Expect(3) = 1e-50
 Identities = 73/149 (48%), Positives = 97/149 (65%), Gaps = 1/149 (0%)
 Frame = -2

Query: 574 AVSVVSRYMHYPRKGHCVATR*ISRYIKGIVDVDLVYQDTNEKQECTEYVDSDYTGDLDK 395
           AVS+VSRYM  P K H  A + I RY+   + + L++       +   YVDSD+ GDLDK
Sbjct: 195 AVSLVSRYMSNPGKEHWEAVKWIFRYLDRTIGMGLMFSSKGGSIDLASYVDSDFAGDLDK 254

Query: 394 RS-TAEYVFTVIQASVCCRCTLQSTMALSVTETEYMAMTEAIKEAIWLRGWLDDLGVDQD 218
           R     YVFT+   ++  +  LQ+T+ALS TE EYMA+TEA +E IWL G + +LG+ Q+
Sbjct: 255 RRFITGYVFTLGGGAISWKAMLQATVALSTTEAEYMAITEAAEEGIWLTGLVTELGIKQE 314

Query: 217 FTEIRCDSKSAICLANNHVYPSRTKHINV 131
              + CDS+SAICLANN V+ SRTKHI V
Sbjct: 315 SATLYCDSQSAICLANNQVFHSRTKHIEV 343



 Score = 73.2 bits (178), Expect(3) = 1e-50
 Identities = 37/73 (50%), Positives = 48/73 (65%)
 Frame = -3

Query: 1005 ALHDP*VYYKILKSGELIYLLLYVDDMFIASKSKTTIDELKVQLYAEFKMKDHGEVKKIL 826
            ++HD  VYYK+L    LI L+LY+DDM IA++    I  LK QL +EF MKD G  K+IL
Sbjct: 49   SVHDSCVYYKVLDDKSLILLMLYIDDMLIAARKMRDIISLKSQLSSEFDMKDLGAAKRIL 108

Query: 825  GTEIVRDKAKEKV 787
            G EI RD+   K+
Sbjct: 109  GMEIFRDRHASKL 121



 Score = 38.1 bits (87), Expect(3) = 1e-50
 Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -1

Query: 707 LTRHFKLSTKLFLKTIEK--RMSHVSFASDVSCLMYVMVCTRAD 582
           L  HFKLS K    + E+  +MS V +AS V  LMY MVC+R D
Sbjct: 148 LANHFKLSEKQCPISHEEVVKMSRVPYASAVGSLMYAMVCSRPD 191