BLASTX nr result
ID: Ophiopogon22_contig00003246
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon22_contig00003246
(2475 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_020261344.1| RNA polymerase sigma factor sigF, chloroplas... 570 0.0
ref|XP_008807704.1| PREDICTED: RNA polymerase sigma factor sigF,... 496 e-165
ref|XP_010907040.1| PREDICTED: RNA polymerase sigma factor sigF,... 498 e-164
ref|XP_008779218.1| PREDICTED: RNA polymerase sigma factor sigF,... 496 e-164
ref|XP_009384040.1| PREDICTED: RNA polymerase sigma factor sigF,... 497 e-164
ref|XP_020085184.1| RNA polymerase sigma factor sigF, chloroplas... 484 e-159
ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF,... 478 e-157
ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF,... 478 e-157
ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF,... 478 e-156
ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF,... 478 e-156
gb|OVA18028.1| RNA polymerase sigma-70 [Macleaya cordata] 449 e-145
ref|XP_020676962.1| RNA polymerase sigma factor sigF, chloroplas... 449 e-145
gb|PKU65607.1| RNA polymerase sigma factor sigF, chloroplastic [... 448 e-145
gb|ONI03025.1| hypothetical protein PRUPE_6G234100 [Prunus persica] 438 e-143
gb|AKC88774.1| sigma factor [Melianthus villosus] 441 e-143
emb|CBI32760.3| unnamed protein product, partial [Vitis vinifera] 442 e-142
ref|XP_019077288.1| PREDICTED: RNA polymerase sigma factor sigF,... 442 e-142
ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF,... 442 e-142
ref|XP_021827463.1| RNA polymerase sigma factor sigF, chloroplas... 440 e-142
ref|XP_021827462.1| RNA polymerase sigma factor sigF, chloroplas... 440 e-142
>ref|XP_020261344.1| RNA polymerase sigma factor sigF, chloroplastic [Asparagus
officinalis]
gb|ONK72278.1| uncharacterized protein A4U43_C04F17680 [Asparagus officinalis]
Length = 582
Score = 570 bits (1470), Expect(2) = 0.0
Identities = 283/374 (75%), Positives = 317/374 (84%)
Frame = +2
Query: 1049 SRXXXEIVLEDETMIXXXXXXXXXXXXXXXXXXXXXXVSEVSSATIAELNMKIEKGLNTD 1228
+R E+ + +ET + V EVS A + +L K++K LNTD
Sbjct: 209 NRFTEEVAINEETTVRSKRRLERQSKRRKVPKKPENAVYEVSGAMLVDLKKKVQKALNTD 268
Query: 1229 DPFRLFLWGPETKQLLTVKEEKDLFLHVQELMRLEEVKQRLKMQFGHEPTLAEWAGALGM 1408
DPFRLFLWGPETKQLLTVKEEKDLFL++QELM+LE KQRL+MQFG EPTLAEWAGA+GM
Sbjct: 269 DPFRLFLWGPETKQLLTVKEEKDLFLNIQELMKLEGSKQRLQMQFGREPTLAEWAGAVGM 328
Query: 1409 SCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGLNIQDLLQEGSRGLMKSLEKFK 1588
SCQ LQSCLRSG RSREKMIYANFRLVIHVA+QYEGKGLNIQDLLQEGS+GLMKSLEKFK
Sbjct: 329 SCQTLQSCLRSGNRSREKMIYANFRLVIHVAKQYEGKGLNIQDLLQEGSKGLMKSLEKFK 388
Query: 1589 PKAGCRFPTYAYWWIRQSIKKAIFQNSRTVRLPENVFGLLKKTRDERRLCIQDGHFPTNK 1768
PK+GCRF +YAYWWIRQSI+KAIFQNSRTVRLPENVF LLKK RD RRLCIQ+GH P N+
Sbjct: 389 PKSGCRFSSYAYWWIRQSIRKAIFQNSRTVRLPENVFALLKKIRDARRLCIQEGHIPCNQ 448
Query: 1769 ELAQRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQEITADPEVEIPDLMIAKQMMR 1948
EL++ VGIRVEKLE LL N+RNP SIQERAW+DQDVT QEITADPEVE PDLMIAKQMMR
Sbjct: 449 ELSKLVGIRVEKLESLLMNSRNPLSIQERAWLDQDVTFQEITADPEVETPDLMIAKQMMR 508
Query: 1949 QHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMYGITKERVRQLESRALDKLKAC 2128
+HVHNLLGVLN RERQIIKFR+GI D++PKSLS+IGAMY ++KERVRQLESRALDKLK C
Sbjct: 509 EHVHNLLGVLNHRERQIIKFRFGIQDNKPKSLSDIGAMYDLSKERVRQLESRALDKLKGC 568
Query: 2129 LSSHGLEAYINLLI 2170
LSS GLEAYI++LI
Sbjct: 569 LSSEGLEAYIDMLI 582
Score = 188 bits (477), Expect(2) = 0.0
Identities = 100/175 (57%), Positives = 126/175 (72%), Gaps = 6/175 (3%)
Frame = +3
Query: 549 SVLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIINGEKVV------KHDGV 710
SVLMLHDQA+RP+T LP TS+ RQFP SV P E ++Y + ++ K+V +H
Sbjct: 31 SVLMLHDQATRPVTFLPATSIVRQFPPSVYPQESNSNYNSCLVKEGKMVQATLDRRHAED 90
Query: 711 GLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSEENKYLATPVVSVTNKTNVAS 890
GL +CEE EKQKFD+YLKY ERRLLYQPG+ FT P SEENKYLA SV + N+ +
Sbjct: 91 GLSICEESEKQKFDQYLKYLERRLLYQPGLCSPFTVPCSEENKYLAMSSESVNSGANILA 150
Query: 891 GNKQILVEQTTSSSVQPGNVLALAKRAVIASRKAALLAEKSNILEFEFGQPPLLG 1055
G+ Q LV Q + SSVQPG+VLALAK+A++ASRKAA LA+KS+ILE E +P +G
Sbjct: 151 GSDQSLVLQNSLSSVQPGSVLALAKKAMLASRKAASLADKSSILESELREPYFIG 205
>ref|XP_008807704.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Phoenix dactylifera]
Length = 466
Score = 496 bits (1278), Expect = e-165
Identities = 245/335 (73%), Positives = 284/335 (84%)
Frame = +2
Query: 1166 EVSSATIAELNMKIEKGLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHVQELMRLEEVKQ 1345
EVS + +N KI+KGL+ +DP RLFLWGPETKQLLTVKEEKDLF+ +Q+LMRLEEV+Q
Sbjct: 132 EVSKSMTTGMNKKIDKGLDPNDPLRLFLWGPETKQLLTVKEEKDLFVQIQDLMRLEEVQQ 191
Query: 1346 RLKMQFGHEPTLAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGL 1525
RL++QF EPTL+EWA A+GMSCQ LQ CL SGKRSREKMI AN RLV+HVA+QYEGKGL
Sbjct: 192 RLRLQFDREPTLSEWAQAVGMSCQALQCCLSSGKRSREKMINANLRLVVHVAKQYEGKGL 251
Query: 1526 NIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTVRLPENVFGL 1705
NI DLLQEGSRGLMKSLEKFKPK GCRF TYAYWWIRQSI+KAIF NSR +RLPENVFGL
Sbjct: 252 NILDLLQEGSRGLMKSLEKFKPKVGCRFSTYAYWWIRQSIRKAIFLNSRVIRLPENVFGL 311
Query: 1706 LKKTRDERRLCIQDGHFPTNKELAQRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQ 1885
LK + RRL IQ+GH PTN+E+A++VGI VE+L+ LL TRNP SIQE AW DQDVT Q
Sbjct: 312 LKSIKKARRLFIQEGHAPTNEEIAKQVGISVERLKVLLLTTRNPISIQECAWTDQDVTFQ 371
Query: 1886 EITADPEVEIPDLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMY 2065
EIT DPEVE PDL +AKQMMRQHV LL +L RERQII++R+GI +++PKSL+EIG M+
Sbjct: 372 EITGDPEVETPDLSMAKQMMRQHVRGLLRILKPRERQIIQYRFGIPNNKPKSLTEIGVMF 431
Query: 2066 GITKERVRQLESRALDKLKACLSSHGLEAYINLLI 2170
G++KERVRQLESRALDKLK C SHGL AY+ LL+
Sbjct: 432 GLSKERVRQLESRALDKLKDCRLSHGLGAYLELLL 466
>ref|XP_010907040.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Elaeis
guineensis]
Length = 570
Score = 498 bits (1283), Expect = e-164
Identities = 247/336 (73%), Positives = 289/336 (86%), Gaps = 1/336 (0%)
Frame = +2
Query: 1166 EVSSATIAELNMKIEKGL-NTDDPFRLFLWGPETKQLLTVKEEKDLFLHVQELMRLEEVK 1342
EVS +++ KI+KGL N +DP RLFLWGPETKQLLTVKEEKDLF+ +Q+++RLEEV+
Sbjct: 235 EVSKLMTSDMKEKIDKGLINQNDPLRLFLWGPETKQLLTVKEEKDLFVQIQDVVRLEEVQ 294
Query: 1343 QRLKMQFGHEPTLAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKG 1522
QRL++QF EPTL+EWA A+GMSCQVLQSCL SGKRSREKMI AN RLV+HVA+QYEGKG
Sbjct: 295 QRLRLQFDREPTLSEWAKAVGMSCQVLQSCLSSGKRSREKMINANLRLVVHVAKQYEGKG 354
Query: 1523 LNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTVRLPENVFG 1702
L++QDLLQEGSRGLMKSLEKFKPKAGCRF TYAYWWIRQSI++AIF NSR +RLPENVFG
Sbjct: 355 LSVQDLLQEGSRGLMKSLEKFKPKAGCRFATYAYWWIRQSIRRAIFLNSRVIRLPENVFG 414
Query: 1703 LLKKTRDERRLCIQDGHFPTNKELAQRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTI 1882
LLK+ ++ RRL IQ+GH PTN+E+A+RVGI VEKLE LL TRNP SIQE W DQDV
Sbjct: 415 LLKRIKNARRLFIQEGHAPTNEEIAKRVGISVEKLEALLLTTRNPISIQECVWTDQDVKF 474
Query: 1883 QEITADPEVEIPDLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAM 2062
QEITADP VE P+L IAKQMMRQHV LL +L RERQII++R+GI ++E KSL+EIGAM
Sbjct: 475 QEITADPGVETPELSIAKQMMRQHVRGLLRILKPRERQIIQYRFGIPNNEQKSLTEIGAM 534
Query: 2063 YGITKERVRQLESRALDKLKACLSSHGLEAYINLLI 2170
+G++KERVRQLESRALDKLK CL SHGL AY+ LL+
Sbjct: 535 FGLSKERVRQLESRALDKLKGCLPSHGLGAYLELLL 570
Score = 116 bits (290), Expect = 3e-23
Identities = 77/172 (44%), Positives = 101/172 (58%), Gaps = 4/172 (2%)
Frame = +3
Query: 549 SVLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIINGEKVVKHDG----VGL 716
SV MLHDQAS TS+PTT +A FP SVL HE +DYKT I+ E+ D G
Sbjct: 27 SVPMLHDQASWTNTSVPTTPIACHFPISVLSHEQHDDYKTNCISKEEKNVQDNQQVRSGR 86
Query: 717 PLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSEENKYLATPVVSVTNKTNVASGN 896
EE+EK +F +YL+Y +++LLY WY F + +EE LA V + S +
Sbjct: 87 SCYEEKEKCEFAQYLRYSKQQLLYHQVFWYPFLSLYTEEKTPLAMAV------EPIKSDS 140
Query: 897 KQILVEQTTSSSVQPGNVLALAKRAVIASRKAALLAEKSNILEFEFGQPPLL 1052
K + +E + V+P VLALAKRA++ASRKAA L E+SNIL EF + L
Sbjct: 141 KGVQLE-NCADFVRPTEVLALAKRAMMASRKAASLMEESNILAAEFDESHFL 191
>ref|XP_008779218.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Phoenix dactylifera]
Length = 529
Score = 496 bits (1278), Expect = e-164
Identities = 245/335 (73%), Positives = 284/335 (84%)
Frame = +2
Query: 1166 EVSSATIAELNMKIEKGLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHVQELMRLEEVKQ 1345
EVS + +N KI+KGL+ +DP RLFLWGPETKQLLTVKEEKDLF+ +Q+LMRLEEV+Q
Sbjct: 195 EVSKSMTTGMNKKIDKGLDPNDPLRLFLWGPETKQLLTVKEEKDLFVQIQDLMRLEEVQQ 254
Query: 1346 RLKMQFGHEPTLAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGL 1525
RL++QF EPTL+EWA A+GMSCQ LQ CL SGKRSREKMI AN RLV+HVA+QYEGKGL
Sbjct: 255 RLRLQFDREPTLSEWAQAVGMSCQALQCCLSSGKRSREKMINANLRLVVHVAKQYEGKGL 314
Query: 1526 NIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTVRLPENVFGL 1705
NI DLLQEGSRGLMKSLEKFKPK GCRF TYAYWWIRQSI+KAIF NSR +RLPENVFGL
Sbjct: 315 NILDLLQEGSRGLMKSLEKFKPKVGCRFSTYAYWWIRQSIRKAIFLNSRVIRLPENVFGL 374
Query: 1706 LKKTRDERRLCIQDGHFPTNKELAQRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQ 1885
LK + RRL IQ+GH PTN+E+A++VGI VE+L+ LL TRNP SIQE AW DQDVT Q
Sbjct: 375 LKSIKKARRLFIQEGHAPTNEEIAKQVGISVERLKVLLLTTRNPISIQECAWTDQDVTFQ 434
Query: 1886 EITADPEVEIPDLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMY 2065
EIT DPEVE PDL +AKQMMRQHV LL +L RERQII++R+GI +++PKSL+EIG M+
Sbjct: 435 EITGDPEVETPDLSMAKQMMRQHVRGLLRILKPRERQIIQYRFGIPNNKPKSLTEIGVMF 494
Query: 2066 GITKERVRQLESRALDKLKACLSSHGLEAYINLLI 2170
G++KERVRQLESRALDKLK C SHGL AY+ LL+
Sbjct: 495 GLSKERVRQLESRALDKLKDCRLSHGLGAYLELLL 529
Score = 69.3 bits (168), Expect = 2e-08
Identities = 43/110 (39%), Positives = 62/110 (56%)
Frame = +3
Query: 726 EEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSEENKYLATPVVSVTNKTNVASGNKQI 905
+E+ K + + L+YFE +LLY WY F + +EE LA T + ++
Sbjct: 50 KEKAKCEVAQCLRYFEHQLLYHQVFWYPFLSLYTEEKTPLAM-------STEPIKSDSKL 102
Query: 906 LVEQTTSSSVQPGNVLALAKRAVIASRKAALLAEKSNILEFEFGQPPLLG 1055
+ + + V+P +VLALAKRA+ ASRKAA L E+SNIL EF + LG
Sbjct: 103 VPLENCADFVRPADVLALAKRAMRASRKAASLMEESNILAAEFDESHFLG 152
>ref|XP_009384040.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Musa
acuminata subsp. malaccensis]
Length = 577
Score = 497 bits (1280), Expect = e-164
Identities = 247/333 (74%), Positives = 288/333 (86%)
Frame = +2
Query: 1172 SSATIAELNMKIEKGLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHVQELMRLEEVKQRL 1351
SS TI + + KI+K L+++DP RLFLWGPETKQLLTVKEEKDLF+ +++LMRLEEVK+RL
Sbjct: 246 SSVTINQ-SKKIDKRLDSNDPLRLFLWGPETKQLLTVKEEKDLFVKIEDLMRLEEVKERL 304
Query: 1352 KMQFGHEPTLAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGLNI 1531
+ Q EPTLAEWA A+GMSCQ LQSCL SG+R+REKMIYANFRLV+HVARQYEGKGLNI
Sbjct: 305 QSQSDREPTLAEWAQAVGMSCQDLQSCLSSGRRNREKMIYANFRLVVHVARQYEGKGLNI 364
Query: 1532 QDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTVRLPENVFGLLK 1711
QDLLQEGSRGLMKSLEKFKP+AGCRFPTYAYWWIRQSIKKAIF+NSRT+RLPEN F LK
Sbjct: 365 QDLLQEGSRGLMKSLEKFKPRAGCRFPTYAYWWIRQSIKKAIFKNSRTIRLPENAFARLK 424
Query: 1712 KTRDERRLCIQDGHFPTNKELAQRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQEI 1891
R+ RRLCIQ+G PTN+E+A+RVGI V+KLE LL N+R P SIQ W+DQDVT QE
Sbjct: 425 SIREARRLCIQEGLLPTNEEIAKRVGITVQKLEILLLNSRYPISIQRHPWLDQDVTFQET 484
Query: 1892 TADPEVEIPDLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMYGI 2071
ADP++EIPDL+IAKQMMRQHV NLL +L RER I+++R+GI SE KSLSEIGAMYG+
Sbjct: 485 VADPKIEIPDLVIAKQMMRQHVRNLLNILKPRERVIVQYRFGIRCSEQKSLSEIGAMYGL 544
Query: 2072 TKERVRQLESRALDKLKACLSSHGLEAYINLLI 2170
+KERVRQLES+AL KL+ CL S GLEAY++LLI
Sbjct: 545 SKERVRQLESQALGKLRKCLQSQGLEAYLDLLI 577
Score = 107 bits (266), Expect = 3e-20
Identities = 72/176 (40%), Positives = 97/176 (55%), Gaps = 7/176 (3%)
Frame = +3
Query: 549 SVLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIING-EKVVKHDG------ 707
SV ML DQAS+P+ +P T + +SVL E +D KT +N EK V+
Sbjct: 28 SVPMLLDQASQPMIHVPATQVVHHITASVLSKEQCDDLKTNHLNKVEKSVQATPDKWLTE 87
Query: 708 VGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSEENKYLATPVVSVTNKTNVA 887
G EEREK +F++YL+Y E +L YQP +WY F P EE + L V T V
Sbjct: 88 AGRSCSEEREKHEFNQYLRYLECQLSYQPSLWYPFP-PLDEEKQSLPVSVGPEETSTCV- 145
Query: 888 SGNKQILVEQTTSSSVQPGNVLALAKRAVIASRKAALLAEKSNILEFEFGQPPLLG 1055
SG+ + + T + P +VLALAK+A+IAS+ AA L E+SNIL E + LG
Sbjct: 146 SGDSSAMQVENTKDCITPADVLALAKKAMIASKIAASLVEQSNILGIEVDKSNFLG 201
>ref|XP_020085184.1| RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Ananas
comosus]
ref|XP_020085185.1| RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Ananas
comosus]
Length = 573
Score = 484 bits (1246), Expect = e-159
Identities = 237/335 (70%), Positives = 290/335 (86%)
Frame = +2
Query: 1166 EVSSATIAELNMKIEKGLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHVQELMRLEEVKQ 1345
EV+S +++ KI+K L+++DP +LFL GPETKQLLT+KEEKDL + +Q+++RLE VKQ
Sbjct: 239 EVASLKSIDISKKIDKRLDSNDPLKLFLRGPETKQLLTLKEEKDLIIQIQDVIRLEGVKQ 298
Query: 1346 RLKMQFGHEPTLAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGL 1525
RL++QFGHEPTLAEWA ++GMSCQVLQSCL SG+RSREK+IYANFRLVIHVA+QYEGKGL
Sbjct: 299 RLELQFGHEPTLAEWARSVGMSCQVLQSCLCSGRRSREKIIYANFRLVIHVAKQYEGKGL 358
Query: 1526 NIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTVRLPENVFGL 1705
++QDLLQEGSRGL+KSLEKFKP+AGCRFP+YAYWWIRQSI+KAIFQ+SRT+RLPENVFGL
Sbjct: 359 SLQDLLQEGSRGLIKSLEKFKPQAGCRFPSYAYWWIRQSIRKAIFQHSRTIRLPENVFGL 418
Query: 1706 LKKTRDERRLCIQDGHFPTNKELAQRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQ 1885
L+K + R+L IQ G+ P N+E+A+ VGI +KLE LL RNP I++R W DQDVT+Q
Sbjct: 419 LRKVKAARKLYIQGGYLPANEEIAKCVGITSQKLESLLLRARNPVPIRKRVWTDQDVTLQ 478
Query: 1886 EITADPEVEIPDLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMY 2065
EITADPEVEIPDL I+K MMR+HV N L +LN RER+II++R+GI D E KSL+EIG MY
Sbjct: 479 EITADPEVEIPDLNISKAMMREHVRNFLRILNPRERKIIQYRFGIHDGERKSLTEIGRMY 538
Query: 2066 GITKERVRQLESRALDKLKACLSSHGLEAYINLLI 2170
G++KERVRQLESRALDKLK L S GLEAY++LLI
Sbjct: 539 GLSKERVRQLESRALDKLKESLPSQGLEAYLHLLI 573
Score = 103 bits (256), Expect = 5e-19
Identities = 65/168 (38%), Positives = 99/168 (58%), Gaps = 10/168 (5%)
Frame = +3
Query: 549 SVLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIINGEKVVKHD------GV 710
SV M+ + ASR +TS+ T+SL + P+S+L E +D K + EKV + G
Sbjct: 25 SVPMISEHASRIVTSMTTSSLVHRLPASLLSLEQHHDRKDYYLKEEKVSQATLDKQKVGD 84
Query: 711 GLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSEENKYLATPVVSVTNKTNVAS 890
PLCEE E+ +F +YL+YF+R+L+ +PG+W P+ NK T ++S + +V
Sbjct: 85 SKPLCEENEEYEFGQYLEYFQRQLISRPGLW-----PQPTINKENTTSIMS--KELSVHH 137
Query: 891 GNKQILVEQ----TTSSSVQPGNVLALAKRAVIASRKAALLAEKSNIL 1022
N + E + S+ P VL+LAK+A++A+RKA LLA+KSNIL
Sbjct: 138 SNSTKVAESIQLGNSPDSLSPAVVLSLAKKAMMATRKATLLAQKSNIL 185
>ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X4
[Nelumbo nucifera]
Length = 525
Score = 478 bits (1229), Expect = e-157
Identities = 231/337 (68%), Positives = 284/337 (84%)
Frame = +2
Query: 1160 VSEVSSATIAELNMKIEKGLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHVQELMRLEEV 1339
VSE S++ ++++ KI +G +T+DP RLFLWGPETKQLLT KEE +LF+HVQEL+RLEEV
Sbjct: 189 VSEASTSRKSDIHKKIHEGFDTNDPLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEV 248
Query: 1340 KQRLKMQFGHEPTLAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGK 1519
KQRL+ QF EPTL EWA A+GM+CQ LQS L SG SREK+IYANFRLV+HVA+ Y+G+
Sbjct: 249 KQRLQSQFDREPTLVEWAEAVGMTCQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQ 308
Query: 1520 GLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTVRLPENVF 1699
GLN+QDLLQEGS GLMKSLEKFKP+AGCRF TYAYWWIRQ+I+KAIFQNSRT+RLPENV+
Sbjct: 309 GLNLQDLLQEGSMGLMKSLEKFKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVY 368
Query: 1700 GLLKKTRDERRLCIQDGHFPTNKELAQRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVT 1879
LL + + ++L IQ+GH PTN+ELA+RVGI VEKLERL +TR P SIQ+ W DQD T
Sbjct: 369 SLLSQVKKAKKLFIQEGHHPTNEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTT 428
Query: 1880 IQEITADPEVEIPDLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGA 2059
QEITAD EVE PDL +AKQ+MR+HV NL+ +L +ER+II+ RYGI+++EPKSL EIG+
Sbjct: 429 FQEITADTEVEKPDLCVAKQLMRRHVRNLISILPPKERRIIRMRYGIENNEPKSLQEIGS 488
Query: 2060 MYGITKERVRQLESRALDKLKACLSSHGLEAYINLLI 2170
++G++KERVRQLESRAL KLK CLSS GL AY +LL+
Sbjct: 489 IFGLSKERVRQLESRALHKLKQCLSSQGLGAYADLLV 525
Score = 71.2 bits (173), Expect = 5e-09
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 10/148 (6%)
Frame = +3
Query: 594 LPTTSLARQFPSSVLPHEPQNDYKT--RIINGEKVVK--------HDGVGLPLCEEREKQ 743
+PTTS+ R FP+SVL E ++D + +II +K + D V L EE++
Sbjct: 1 MPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLEDKVHL--YEEKKSC 58
Query: 744 KFDEYLKYFERRLLYQPGVWYLFTAPRSEENKYLATPVVSVTNKTNVASGNKQILVEQTT 923
+ D Y + FER+LLY PG+WYL + E P++S+ ++ A K +
Sbjct: 59 QPDRYWEGFERQLLYWPGLWYLLPSLYKGEK-----PLLSMVTQSTAAGTVKNV------ 107
Query: 924 SSSVQPGNVLALAKRAVIASRKAALLAE 1007
V+P + L LAK+AV+AS++AA LA+
Sbjct: 108 --DVRPCDALELAKKAVLASKQAASLAK 133
>ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X3
[Nelumbo nucifera]
Length = 540
Score = 478 bits (1229), Expect = e-157
Identities = 231/337 (68%), Positives = 284/337 (84%)
Frame = +2
Query: 1160 VSEVSSATIAELNMKIEKGLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHVQELMRLEEV 1339
VSE S++ ++++ KI +G +T+DP RLFLWGPETKQLLT KEE +LF+HVQEL+RLEEV
Sbjct: 204 VSEASTSRKSDIHKKIHEGFDTNDPLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEV 263
Query: 1340 KQRLKMQFGHEPTLAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGK 1519
KQRL+ QF EPTL EWA A+GM+CQ LQS L SG SREK+IYANFRLV+HVA+ Y+G+
Sbjct: 264 KQRLQSQFDREPTLVEWAEAVGMTCQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQ 323
Query: 1520 GLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTVRLPENVF 1699
GLN+QDLLQEGS GLMKSLEKFKP+AGCRF TYAYWWIRQ+I+KAIFQNSRT+RLPENV+
Sbjct: 324 GLNLQDLLQEGSMGLMKSLEKFKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVY 383
Query: 1700 GLLKKTRDERRLCIQDGHFPTNKELAQRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVT 1879
LL + + ++L IQ+GH PTN+ELA+RVGI VEKLERL +TR P SIQ+ W DQD T
Sbjct: 384 SLLSQVKKAKKLFIQEGHHPTNEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTT 443
Query: 1880 IQEITADPEVEIPDLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGA 2059
QEITAD EVE PDL +AKQ+MR+HV NL+ +L +ER+II+ RYGI+++EPKSL EIG+
Sbjct: 444 FQEITADTEVEKPDLCVAKQLMRRHVRNLISILPPKERRIIRMRYGIENNEPKSLQEIGS 503
Query: 2060 MYGITKERVRQLESRALDKLKACLSSHGLEAYINLLI 2170
++G++KERVRQLESRAL KLK CLSS GL AY +LL+
Sbjct: 504 IFGLSKERVRQLESRALHKLKQCLSSQGLGAYADLLV 540
Score = 83.2 bits (204), Expect = 9e-13
Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 10/162 (6%)
Frame = +3
Query: 552 VLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYK--TRIINGEKVVK--------H 701
V +LH+QA+ + S+PTTS+ R FP+SVL E ++D + +II +K +
Sbjct: 2 VTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLE 61
Query: 702 DGVGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSEENKYLATPVVSVTNKTN 881
D V L EE++ + D Y + FER+LLY PG+WYL + E P++S+ ++
Sbjct: 62 DKV--HLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEK-----PLLSMVTQST 114
Query: 882 VASGNKQILVEQTTSSSVQPGNVLALAKRAVIASRKAALLAE 1007
A K + V+P + L LAK+AV+AS++AA LA+
Sbjct: 115 AAGTVKNV--------DVRPCDALELAKKAVLASKQAASLAK 148
>ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
[Nelumbo nucifera]
Length = 565
Score = 478 bits (1229), Expect = e-156
Identities = 231/337 (68%), Positives = 284/337 (84%)
Frame = +2
Query: 1160 VSEVSSATIAELNMKIEKGLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHVQELMRLEEV 1339
VSE S++ ++++ KI +G +T+DP RLFLWGPETKQLLT KEE +LF+HVQEL+RLEEV
Sbjct: 229 VSEASTSRKSDIHKKIHEGFDTNDPLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEV 288
Query: 1340 KQRLKMQFGHEPTLAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGK 1519
KQRL+ QF EPTL EWA A+GM+CQ LQS L SG SREK+IYANFRLV+HVA+ Y+G+
Sbjct: 289 KQRLQSQFDREPTLVEWAEAVGMTCQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQ 348
Query: 1520 GLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTVRLPENVF 1699
GLN+QDLLQEGS GLMKSLEKFKP+AGCRF TYAYWWIRQ+I+KAIFQNSRT+RLPENV+
Sbjct: 349 GLNLQDLLQEGSMGLMKSLEKFKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVY 408
Query: 1700 GLLKKTRDERRLCIQDGHFPTNKELAQRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVT 1879
LL + + ++L IQ+GH PTN+ELA+RVGI VEKLERL +TR P SIQ+ W DQD T
Sbjct: 409 SLLSQVKKAKKLFIQEGHHPTNEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTT 468
Query: 1880 IQEITADPEVEIPDLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGA 2059
QEITAD EVE PDL +AKQ+MR+HV NL+ +L +ER+II+ RYGI+++EPKSL EIG+
Sbjct: 469 FQEITADTEVEKPDLCVAKQLMRRHVRNLISILPPKERRIIRMRYGIENNEPKSLQEIGS 528
Query: 2060 MYGITKERVRQLESRALDKLKACLSSHGLEAYINLLI 2170
++G++KERVRQLESRAL KLK CLSS GL AY +LL+
Sbjct: 529 IFGLSKERVRQLESRALHKLKQCLSSQGLGAYADLLV 565
Score = 84.7 bits (208), Expect = 3e-13
Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 10/163 (6%)
Frame = +3
Query: 549 SVLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYK--TRIINGEKVVK-------- 698
SV +LH+QA+ + S+PTTS+ R FP+SVL E ++D + +II +K +
Sbjct: 26 SVTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKL 85
Query: 699 HDGVGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSEENKYLATPVVSVTNKT 878
D V L EE++ + D Y + FER+LLY PG+WYL + E P++S+ ++
Sbjct: 86 EDKV--HLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEK-----PLLSMVTQS 138
Query: 879 NVASGNKQILVEQTTSSSVQPGNVLALAKRAVIASRKAALLAE 1007
A K + V+P + L LAK+AV+AS++AA LA+
Sbjct: 139 TAAGTVKNV--------DVRPCDALELAKKAVLASKQAASLAK 173
>ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
[Nelumbo nucifera]
Length = 568
Score = 478 bits (1229), Expect = e-156
Identities = 231/337 (68%), Positives = 284/337 (84%)
Frame = +2
Query: 1160 VSEVSSATIAELNMKIEKGLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHVQELMRLEEV 1339
VSE S++ ++++ KI +G +T+DP RLFLWGPETKQLLT KEE +LF+HVQEL+RLEEV
Sbjct: 232 VSEASTSRKSDIHKKIHEGFDTNDPLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEV 291
Query: 1340 KQRLKMQFGHEPTLAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGK 1519
KQRL+ QF EPTL EWA A+GM+CQ LQS L SG SREK+IYANFRLV+HVA+ Y+G+
Sbjct: 292 KQRLQSQFDREPTLVEWAEAVGMTCQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQ 351
Query: 1520 GLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTVRLPENVF 1699
GLN+QDLLQEGS GLMKSLEKFKP+AGCRF TYAYWWIRQ+I+KAIFQNSRT+RLPENV+
Sbjct: 352 GLNLQDLLQEGSMGLMKSLEKFKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVY 411
Query: 1700 GLLKKTRDERRLCIQDGHFPTNKELAQRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVT 1879
LL + + ++L IQ+GH PTN+ELA+RVGI VEKLERL +TR P SIQ+ W DQD T
Sbjct: 412 SLLSQVKKAKKLFIQEGHHPTNEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTT 471
Query: 1880 IQEITADPEVEIPDLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGA 2059
QEITAD EVE PDL +AKQ+MR+HV NL+ +L +ER+II+ RYGI+++EPKSL EIG+
Sbjct: 472 FQEITADTEVEKPDLCVAKQLMRRHVRNLISILPPKERRIIRMRYGIENNEPKSLQEIGS 531
Query: 2060 MYGITKERVRQLESRALDKLKACLSSHGLEAYINLLI 2170
++G++KERVRQLESRAL KLK CLSS GL AY +LL+
Sbjct: 532 IFGLSKERVRQLESRALHKLKQCLSSQGLGAYADLLV 568
Score = 83.2 bits (204), Expect = 1e-12
Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 10/162 (6%)
Frame = +3
Query: 552 VLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYK--TRIINGEKVVK--------H 701
V +LH+QA+ + S+PTTS+ R FP+SVL E ++D + +II +K +
Sbjct: 30 VTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLE 89
Query: 702 DGVGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSEENKYLATPVVSVTNKTN 881
D V L EE++ + D Y + FER+LLY PG+WYL + E P++S+ ++
Sbjct: 90 DKV--HLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEK-----PLLSMVTQST 142
Query: 882 VASGNKQILVEQTTSSSVQPGNVLALAKRAVIASRKAALLAE 1007
A K + V+P + L LAK+AV+AS++AA LA+
Sbjct: 143 AAGTVKNV--------DVRPCDALELAKKAVLASKQAASLAK 176
>gb|OVA18028.1| RNA polymerase sigma-70 [Macleaya cordata]
Length = 562
Score = 449 bits (1154), Expect = e-145
Identities = 221/334 (66%), Positives = 271/334 (81%)
Frame = +2
Query: 1166 EVSSATIAELNMKIEKGLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHVQELMRLEEVKQ 1345
E+SS E + KI + ++ +DP LFL G ETKQLLT KEE +LF+ VQEL+RLEEVKQ
Sbjct: 228 ELSSFRTTEKHHKINQVIDPNDPLGLFLSGSETKQLLTAKEETELFIQVQELIRLEEVKQ 287
Query: 1346 RLKMQFGHEPTLAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGL 1525
RL+ QF EPTL EWA A+GM+C LQ L SG RSREKMIY+NFR+V+HVA+ Y+GKGL
Sbjct: 288 RLQSQFDREPTLVEWAEAVGMNCGTLQLHLHSGNRSREKMIYSNFRMVVHVAKNYQGKGL 347
Query: 1526 NIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTVRLPENVFGL 1705
N+QDLLQEGS+GL+KSLEKFKP+AGCRF TYAYWWIRQSI+KAIFQNSRT+RLPENV+
Sbjct: 348 NLQDLLQEGSKGLIKSLEKFKPQAGCRFSTYAYWWIRQSIRKAIFQNSRTIRLPENVYNA 407
Query: 1706 LKKTRDERRLCIQDGHFPTNKELAQRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQ 1885
L++ + + L I++GH PTN+ELA+RVGI VEKLE LL++TR P S+Q W DQD T Q
Sbjct: 408 LRQVKSAKELFIKEGHQPTNEELAKRVGISVEKLESLLASTRMPLSMQRPVWSDQDTTFQ 467
Query: 1886 EITADPEVEIPDLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMY 2065
EITAD EV P+L + K +MR+HV NLL VL +ER+II+ RYGI+D E KSL++IG ++
Sbjct: 468 EITADTEVATPELCVEKNLMRRHVRNLLSVLPPKERRIIRLRYGIEDGEQKSLAQIGTVF 527
Query: 2066 GITKERVRQLESRALDKLKACLSSHGLEAYINLL 2167
G++KERVRQLE+RALDKLK CLSSHGLEAY NLL
Sbjct: 528 GLSKERVRQLENRALDKLKKCLSSHGLEAYTNLL 561
Score = 89.7 bits (221), Expect = 9e-15
Identities = 58/171 (33%), Positives = 99/171 (57%), Gaps = 7/171 (4%)
Frame = +3
Query: 549 SVLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRI-INGEKVVKHD------G 707
SV MLH+ A+ +TS+PTTS+ R FP+SVL E ++D ++ + I +K +
Sbjct: 28 SVTMLHELAAPAVTSVPTTSITRHFPASVLLQEQRDDIRSLLHIREDKPFEATLNRTQMD 87
Query: 708 VGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSEENKYLATPVVSVTNKTNVA 887
L +E++ + D+YLK FER+LLY PG+WYL + +S E PV+ ++ ++
Sbjct: 88 NDASLIQEKKDCRSDQYLKDFERQLLYWPGLWYLLPSSQSGEK-----PVLPLSMQSMAP 142
Query: 888 SGNKQILVEQTTSSSVQPGNVLALAKRAVIASRKAALLAEKSNILEFEFGQ 1040
+K + + +VL+LAK+A++AS++A LA +SN + +F +
Sbjct: 143 DADKVL--------QFKACDVLSLAKKALLASKQAVSLAAESNSIGHDFDE 185
>ref|XP_020676962.1| RNA polymerase sigma factor sigF, chloroplastic [Dendrobium
catenatum]
Length = 575
Score = 449 bits (1154), Expect = e-145
Identities = 221/335 (65%), Positives = 270/335 (80%)
Frame = +2
Query: 1163 SEVSSATIAELNMKIEKGLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHVQELMRLEEVK 1342
S S AT +I+K + +DP RLFLWG ETK+LLT+ EEK+LF +Q+LM ++ VK
Sbjct: 240 SVTSMATDNVKVKRIDKIFDNNDPLRLFLWGSETKKLLTIAEEKELFAQIQDLMEMDVVK 299
Query: 1343 QRLKMQFGHEPTLAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKG 1522
++L MQFG EPTL EWA A+GMS LQ+C+ SG SR ++IYANFRLV+H+A+QYEGKG
Sbjct: 300 EKLHMQFGREPTLIEWAEAVGMSFHDLQACISSGMHSRNRVIYANFRLVVHIAKQYEGKG 359
Query: 1523 LNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTVRLPENVFG 1702
LNIQDLLQEGS GLMKSLEKFKPK GCRF TYAYWWIRQSI+KAIFQ+SRT+RLPENVF
Sbjct: 360 LNIQDLLQEGSMGLMKSLEKFKPKIGCRFSTYAYWWIRQSIRKAIFQHSRTIRLPENVFA 419
Query: 1703 LLKKTRDERRLCIQDGHFPTNKELAQRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTI 1882
LK +D RR+C+Q+G PTN+E+A+R G+ V KL LL +RNP SIQ WIDQD+T
Sbjct: 420 ELKIIKDARRICLQEGLTPTNEEVAKRAGMHVGKLVNLLKISRNPISIQGHTWIDQDITF 479
Query: 1883 QEITADPEVEIPDLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAM 2062
QEITADPE+EIP+++I KQMMRQHVH+LLGVL+ RER++I+ R+GI SEPKSL +IG M
Sbjct: 480 QEITADPEIEIPNIIIEKQMMRQHVHSLLGVLSPRERKLIRLRFGIQYSEPKSLQQIGDM 539
Query: 2063 YGITKERVRQLESRALDKLKACLSSHGLEAYINLL 2167
+GI+KERVRQLES+AL KL+AC SS GL AY LL
Sbjct: 540 FGISKERVRQLESQALKKLRACSSSQGLGAYAELL 574
Score = 105 bits (261), Expect = 1e-19
Identities = 71/174 (40%), Positives = 93/174 (53%), Gaps = 9/174 (5%)
Frame = +3
Query: 537 LHVFSVLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRI-INGEKVVK----- 698
L + SV+ LH Q SR I S PT S R F +S+L E N Y + I EK +
Sbjct: 24 LSLSSVVRLHGQVSRAIFSTPTKSADRHFNTSILTQEQHNYYSSSYGIQEEKGAQAIFDL 83
Query: 699 ---HDGVGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSEENKYLATPVVSVT 869
DG +ER K FD YLK+ ERRLLY PG+WY F + E + T +
Sbjct: 84 QSLEDGS--LSSDERGKHHFDVYLKHLERRLLYDPGLWYSFLTKYNLEKAVMRT--TELI 139
Query: 870 NKTNVASGNKQILVEQTTSSSVQPGNVLALAKRAVIASRKAALLAEKSNILEFE 1031
N G + + EQ +S+++P +VL LA+RA++ASR AALLAEKSN E
Sbjct: 140 NNKKAGVGVELMETEQANTSTMRPEDVLELARRALMASRDAALLAEKSNSFSHE 193
>gb|PKU65607.1| RNA polymerase sigma factor sigF, chloroplastic [Dendrobium
catenatum]
Length = 575
Score = 448 bits (1152), Expect = e-145
Identities = 221/335 (65%), Positives = 269/335 (80%)
Frame = +2
Query: 1163 SEVSSATIAELNMKIEKGLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHVQELMRLEEVK 1342
S S AT +I+K + +DP RLFLWG ETK+LLT+ EEK+LF +Q+LM ++ VK
Sbjct: 240 SVTSMATDNVKVKRIDKIFDNNDPLRLFLWGSETKKLLTIAEEKELFAQIQDLMEMDVVK 299
Query: 1343 QRLKMQFGHEPTLAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKG 1522
++L MQFG EPTL EWA A+GMS LQ+C+ SG SR ++IYANFRLV+H+A+QYEGKG
Sbjct: 300 EKLHMQFGREPTLIEWAEAVGMSFHDLQACISSGMHSRNRVIYANFRLVVHIAKQYEGKG 359
Query: 1523 LNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTVRLPENVFG 1702
LNIQDLLQEGS GLMKSLEKFKPK GCRF TYAYWWIRQSI+KAIFQ+SRT+RLPENVF
Sbjct: 360 LNIQDLLQEGSMGLMKSLEKFKPKIGCRFSTYAYWWIRQSIRKAIFQHSRTIRLPENVFA 419
Query: 1703 LLKKTRDERRLCIQDGHFPTNKELAQRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTI 1882
LK +D RR+C+Q+G PTN+E+A+R G+ V KL LL +RNP SIQ WIDQD+T
Sbjct: 420 ELKIIKDARRICLQEGLTPTNEEVAKRAGMHVGKLVNLLKISRNPISIQGHTWIDQDITF 479
Query: 1883 QEITADPEVEIPDLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAM 2062
QEITADPE+EIP ++I KQMMRQHVH+LLGVL+ RER++I+ R+GI SEPKSL +IG M
Sbjct: 480 QEITADPEIEIPKIVIEKQMMRQHVHSLLGVLSPRERKLIRLRFGIQYSEPKSLQQIGDM 539
Query: 2063 YGITKERVRQLESRALDKLKACLSSHGLEAYINLL 2167
+GI+KERVRQLES+AL KL+AC SS GL AY LL
Sbjct: 540 FGISKERVRQLESQALKKLRACSSSQGLGAYAELL 574
Score = 105 bits (261), Expect = 1e-19
Identities = 71/174 (40%), Positives = 93/174 (53%), Gaps = 9/174 (5%)
Frame = +3
Query: 537 LHVFSVLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRI-INGEKVVK----- 698
L + SV+ LH Q SR I S PT S R F +S+L E N Y + I EK +
Sbjct: 24 LSLSSVVRLHGQVSRAIFSTPTKSADRHFNTSILTQEQHNYYSSSYGIQEEKGAQAIFDL 83
Query: 699 ---HDGVGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSEENKYLATPVVSVT 869
DG +ER K FD YLK+ ERRLLY PG+WY F + E + T +
Sbjct: 84 QSLEDGS--LSSDERGKHHFDVYLKHLERRLLYDPGLWYSFLTKYNLEKAVMRT--TELI 139
Query: 870 NKTNVASGNKQILVEQTTSSSVQPGNVLALAKRAVIASRKAALLAEKSNILEFE 1031
N G + + EQ +S+++P +VL LA+RA++ASR AALLAEKSN E
Sbjct: 140 NNKKAGVGVELMETEQANTSTMRPEDVLELARRALMASRDAALLAEKSNSFSHE 193
>gb|ONI03025.1| hypothetical protein PRUPE_6G234100 [Prunus persica]
Length = 422
Score = 438 bits (1127), Expect = e-143
Identities = 213/336 (63%), Positives = 270/336 (80%), Gaps = 1/336 (0%)
Frame = +2
Query: 1166 EVSSATIAELNMKIEKGLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHVQELMRLEEVKQ 1345
E +S T +++ KI +G N +DP RLFLWGPET+QLLT KEE +L VQ+L +LEEVK
Sbjct: 87 ESNSFTGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKS 146
Query: 1346 RLKMQFGHEPTLAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGL 1525
RL+ QFG EPTL EWA A+G+SCQ+L+S LRSG SREK+IYAN R+V+H+A+QY+G+GL
Sbjct: 147 RLQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGL 206
Query: 1526 NIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTVRLPENVFGL 1705
+QDL+QEGS GLMKS+EKFKP+AGCRF TYAYWWIRQ+++KAIFQ+SRT+RLPENV+ L
Sbjct: 207 GLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSL 266
Query: 1706 LKKTRDERRLCIQDG-HFPTNKELAQRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTI 1882
L K + ++ CIQ+G H P +ELA+RVGI VEKLE+LL TR P S+Q+ W DQD T
Sbjct: 267 LGKVLEAKKSCIQEGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTF 326
Query: 1883 QEITADPEVEIPDLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAM 2062
QE+TAD VEIPD+ +AKQ+MRQHV +LL +LN RER+II+ RYGI+D + +SLSEIG M
Sbjct: 327 QEVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEIGGM 386
Query: 2063 YGITKERVRQLESRALDKLKACLSSHGLEAYINLLI 2170
+G++KERVRQLESRA KL+ L S GL AY LL+
Sbjct: 387 FGLSKERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 422
>gb|AKC88774.1| sigma factor [Melianthus villosus]
Length = 538
Score = 441 bits (1135), Expect = e-143
Identities = 209/338 (61%), Positives = 275/338 (81%), Gaps = 1/338 (0%)
Frame = +2
Query: 1160 VSEVSSATIAELNMKIEKGLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHVQELMRLEEV 1339
V+E + + ++ K+ +G N +DP RLFL GPETKQLLT KEE L + +QELM+LE+V
Sbjct: 201 VNETNCSRRTDIKRKVAEGFNPNDPLRLFLGGPETKQLLTAKEESVLIVRIQELMKLEQV 260
Query: 1340 KQRLKMQFGHEPTLAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGK 1519
+ RL+ QFGHEPTL +WA A G+SC+ LQS + SGK+SR+K+IYAN R+V+H+A+QY G+
Sbjct: 261 RNRLQCQFGHEPTLIKWAEAAGLSCRALQSQINSGKKSRDKLIYANLRMVVHIAKQYLGR 320
Query: 1520 GLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTVRLPENVF 1699
GL+ QDL QEGS GLM S+EKFKP+AGCRF TYAYWWIRQS++KAIFQ+SRT+RLPENV+
Sbjct: 321 GLSFQDLQQEGSMGLMISVEKFKPQAGCRFGTYAYWWIRQSVRKAIFQHSRTIRLPENVY 380
Query: 1700 GLLKKTRDERRLCIQDG-HFPTNKELAQRVGIRVEKLERLLSNTRNPRSIQERAWIDQDV 1876
GLL K + +RL IQ+G H PT +++A R+GI V+KLERLL+ TR P SIQ+ W DQ+
Sbjct: 381 GLLAKVLEAKRLYIQEGNHHPTKEDIAGRIGITVDKLERLLATTRMPLSIQQPVWADQNT 440
Query: 1877 TIQEITADPEVEIPDLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIG 2056
T QE+TAD VEIPD+ + KQ+MR+H+ LLG+L+ +ER+II+ R+GI+D E KSLSEIG
Sbjct: 441 TFQEVTADTAVEIPDISVGKQLMRKHMRGLLGILSSKERRIIRLRFGIEDGEQKSLSEIG 500
Query: 2057 AMYGITKERVRQLESRALDKLKACLSSHGLEAYINLLI 2170
A++G++KERVRQLESRAL +LK CLSS GLEAY+N+L+
Sbjct: 501 AIFGLSKERVRQLESRALHRLKQCLSSQGLEAYVNMLV 538
>emb|CBI32760.3| unnamed protein product, partial [Vitis vinifera]
Length = 561
Score = 442 bits (1136), Expect = e-142
Identities = 211/338 (62%), Positives = 272/338 (80%), Gaps = 1/338 (0%)
Frame = +2
Query: 1160 VSEVSSATIAELNMKIEKGLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHVQELMRLEEV 1339
V E + AE+ KI +G + DP RLFLWGPET++LLT KEE +L + +QELMRLEEV
Sbjct: 224 VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEV 283
Query: 1340 KQRLKMQFGHEPTLAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGK 1519
K+RL+ EPT+ EWA A+G+SCQVLQS L SG RSR+K+IYAN R+V+H+A+QY+G+
Sbjct: 284 KKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGR 343
Query: 1520 GLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTVRLPENVF 1699
GLN+QDLLQEGS GLM S+EKFKP AGCRF +YAYWWIRQ+++KAIFQ+SRT+RLPEN++
Sbjct: 344 GLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMY 403
Query: 1700 GLLKKTRDERRLCIQDGHF-PTNKELAQRVGIRVEKLERLLSNTRNPRSIQERAWIDQDV 1876
LL K ++ +RL IQ+GH PT +E+A+RVGI +EKL+RLL +TR P S+Q+ W DQD
Sbjct: 404 SLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDT 463
Query: 1877 TIQEITADPEVEIPDLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIG 2056
T QE+TAD +EIPD+ +AKQ+MRQHV NLL VL +ER+II+ R+GI D P++LSEIG
Sbjct: 464 TFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIG 523
Query: 2057 AMYGITKERVRQLESRALDKLKACLSSHGLEAYINLLI 2170
++G +KERVRQLE RAL KLK CLSSHGLE+Y +LL+
Sbjct: 524 LVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 561
Score = 85.1 bits (209), Expect = 2e-13
Identities = 58/178 (32%), Positives = 95/178 (53%), Gaps = 9/178 (5%)
Frame = +3
Query: 549 SVLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKT--RIINGEKVV-----KHDG 707
SVLMLHDQ + + S+PTT +AR+FP+SVL E +++Y+ + + E+ K
Sbjct: 26 SVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQM 84
Query: 708 VGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSEENKYLATPVVSVTNKTNVA 887
+ +E ++Y+ FER+LL QPG+WY + ++ E ++ ++
Sbjct: 85 EIVVSADEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIM--------- 135
Query: 888 SGNKQILVEQTTSSSVQPGNVLALAKRAVIASRKAALLAEKSNIL--EFEFGQPPLLG 1055
K I + S V+P +VLALAK+A+ AS++A L E + +L + E P LG
Sbjct: 136 ---KSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSPSLG 190
>ref|XP_019077288.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
[Vitis vinifera]
Length = 566
Score = 442 bits (1136), Expect = e-142
Identities = 211/338 (62%), Positives = 272/338 (80%), Gaps = 1/338 (0%)
Frame = +2
Query: 1160 VSEVSSATIAELNMKIEKGLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHVQELMRLEEV 1339
V E + AE+ KI +G + DP RLFLWGPET++LLT KEE +L + +QELMRLEEV
Sbjct: 229 VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEV 288
Query: 1340 KQRLKMQFGHEPTLAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGK 1519
K+RL+ EPT+ EWA A+G+SCQVLQS L SG RSR+K+IYAN R+V+H+A+QY+G+
Sbjct: 289 KKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGR 348
Query: 1520 GLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTVRLPENVF 1699
GLN+QDLLQEGS GLM S+EKFKP AGCRF +YAYWWIRQ+++KAIFQ+SRT+RLPEN++
Sbjct: 349 GLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMY 408
Query: 1700 GLLKKTRDERRLCIQDGHF-PTNKELAQRVGIRVEKLERLLSNTRNPRSIQERAWIDQDV 1876
LL K ++ +RL IQ+GH PT +E+A+RVGI +EKL+RLL +TR P S+Q+ W DQD
Sbjct: 409 SLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDT 468
Query: 1877 TIQEITADPEVEIPDLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIG 2056
T QE+TAD +EIPD+ +AKQ+MRQHV NLL VL +ER+II+ R+GI D P++LSEIG
Sbjct: 469 TFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIG 528
Query: 2057 AMYGITKERVRQLESRALDKLKACLSSHGLEAYINLLI 2170
++G +KERVRQLE RAL KLK CLSSHGLE+Y +LL+
Sbjct: 529 LVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 566
Score = 84.3 bits (207), Expect = 4e-13
Identities = 55/173 (31%), Positives = 92/173 (53%), Gaps = 7/173 (4%)
Frame = +3
Query: 549 SVLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKT--RIINGEKVV-----KHDG 707
SVLMLHDQ + + S+PTT +AR+FP+SVL E +++Y+ + + E+ K
Sbjct: 32 SVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQM 90
Query: 708 VGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSEENKYLATPVVSVTNKTNVA 887
+ +E ++Y+ FER+LL QPG+WY + ++ E ++ ++
Sbjct: 91 EIVVSADEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIM--------- 141
Query: 888 SGNKQILVEQTTSSSVQPGNVLALAKRAVIASRKAALLAEKSNILEFEFGQPP 1046
K I + S V+P +VLALAK+A+ AS++A L E + +L + P
Sbjct: 142 ---KSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSP 191
>ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
[Vitis vinifera]
Length = 567
Score = 442 bits (1136), Expect = e-142
Identities = 211/338 (62%), Positives = 272/338 (80%), Gaps = 1/338 (0%)
Frame = +2
Query: 1160 VSEVSSATIAELNMKIEKGLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHVQELMRLEEV 1339
V E + AE+ KI +G + DP RLFLWGPET++LLT KEE +L + +QELMRLEEV
Sbjct: 230 VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEV 289
Query: 1340 KQRLKMQFGHEPTLAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGK 1519
K+RL+ EPT+ EWA A+G+SCQVLQS L SG RSR+K+IYAN R+V+H+A+QY+G+
Sbjct: 290 KKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGR 349
Query: 1520 GLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTVRLPENVF 1699
GLN+QDLLQEGS GLM S+EKFKP AGCRF +YAYWWIRQ+++KAIFQ+SRT+RLPEN++
Sbjct: 350 GLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMY 409
Query: 1700 GLLKKTRDERRLCIQDGHF-PTNKELAQRVGIRVEKLERLLSNTRNPRSIQERAWIDQDV 1876
LL K ++ +RL IQ+GH PT +E+A+RVGI +EKL+RLL +TR P S+Q+ W DQD
Sbjct: 410 SLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDT 469
Query: 1877 TIQEITADPEVEIPDLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIG 2056
T QE+TAD +EIPD+ +AKQ+MRQHV NLL VL +ER+II+ R+GI D P++LSEIG
Sbjct: 470 TFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIG 529
Query: 2057 AMYGITKERVRQLESRALDKLKACLSSHGLEAYINLLI 2170
++G +KERVRQLE RAL KLK CLSSHGLE+Y +LL+
Sbjct: 530 LVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 567
Score = 85.1 bits (209), Expect = 2e-13
Identities = 58/178 (32%), Positives = 95/178 (53%), Gaps = 9/178 (5%)
Frame = +3
Query: 549 SVLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKT--RIINGEKVV-----KHDG 707
SVLMLHDQ + + S+PTT +AR+FP+SVL E +++Y+ + + E+ K
Sbjct: 32 SVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQM 90
Query: 708 VGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSEENKYLATPVVSVTNKTNVA 887
+ +E ++Y+ FER+LL QPG+WY + ++ E ++ ++
Sbjct: 91 EIVVSADEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIM--------- 141
Query: 888 SGNKQILVEQTTSSSVQPGNVLALAKRAVIASRKAALLAEKSNIL--EFEFGQPPLLG 1055
K I + S V+P +VLALAK+A+ AS++A L E + +L + E P LG
Sbjct: 142 ---KSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSPSLG 196
>ref|XP_021827463.1| RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Prunus
avium]
Length = 539
Score = 440 bits (1132), Expect = e-142
Identities = 214/336 (63%), Positives = 271/336 (80%), Gaps = 1/336 (0%)
Frame = +2
Query: 1166 EVSSATIAELNMKIEKGLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHVQELMRLEEVKQ 1345
E +S T +++ KI +G N +DP RLFLWGPET+QLLT KEE +L VQ+L +LEEVK
Sbjct: 204 ESNSFTSSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKT 263
Query: 1346 RLKMQFGHEPTLAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGL 1525
RL+ QFG EPTL EWA A+G+SCQ+L+S LRSG SREK+IYAN R+V+H+A+QY+G+GL
Sbjct: 264 RLQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGL 323
Query: 1526 NIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTVRLPENVFGL 1705
+QDL+QEGS GLMKS+EKFKP+AGCRF TYAYWWIRQ+++KAIFQ+SRT+RLPENV+ L
Sbjct: 324 GLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSL 383
Query: 1706 LKKTRDERRLCIQDG-HFPTNKELAQRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTI 1882
L K + ++ CIQ+G H P+ +ELA+RVGI VEKLE+LL TR P S+Q+ W DQD T
Sbjct: 384 LGKVLEAKKSCIQEGNHNPSKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTF 443
Query: 1883 QEITADPEVEIPDLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAM 2062
QE+TAD VEIPD+ +AKQ+MRQHV +LL +LN RERQII+ RYGI+D + +SLSEIG M
Sbjct: 444 QEVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLRERQIIRLRYGIEDGKQRSLSEIGGM 503
Query: 2063 YGITKERVRQLESRALDKLKACLSSHGLEAYINLLI 2170
+G++KERVRQLESRA KL+ L S GL AY LL+
Sbjct: 504 FGLSKERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 539
Score = 65.1 bits (157), Expect = 4e-07
Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 12/178 (6%)
Frame = +3
Query: 558 MLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIINGEKVVKHD----------- 704
MLH+QA +TS+P TS+AR FP+SVL E ++++K + V+K D
Sbjct: 1 MLHEQAVPAVTSVPITSVARHFPTSVLLQEQRDEFKPLL----HVLKEDKTSEATLDRMQ 56
Query: 705 -GVGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSEENKYLATPVVSVTNKTN 881
G + E+ + F + + +LL P + +F++ ++ A P +T ++
Sbjct: 57 IETGASVHEDLDIDDFYPLVNGSKPQLL-NPDILDVFSSLQTG-----AKPSTPLTLESL 110
Query: 882 VASGNKQILVEQTTSSSVQPGNVLALAKRAVIASRKAALLAEKSNILEFEFGQPPLLG 1055
+ NK + V+P NV+ALAK+A+ ASR+AA LAE S + +F + LG
Sbjct: 111 TTASNKHM--------DVEPCNVVALAKKALSASREAASLAEDSQSMGADFDESLSLG 160
>ref|XP_021827462.1| RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Prunus
avium]
Length = 573
Score = 440 bits (1132), Expect = e-142
Identities = 214/336 (63%), Positives = 271/336 (80%), Gaps = 1/336 (0%)
Frame = +2
Query: 1166 EVSSATIAELNMKIEKGLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHVQELMRLEEVKQ 1345
E +S T +++ KI +G N +DP RLFLWGPET+QLLT KEE +L VQ+L +LEEVK
Sbjct: 238 ESNSFTSSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKT 297
Query: 1346 RLKMQFGHEPTLAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGL 1525
RL+ QFG EPTL EWA A+G+SCQ+L+S LRSG SREK+IYAN R+V+H+A+QY+G+GL
Sbjct: 298 RLQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGL 357
Query: 1526 NIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTVRLPENVFGL 1705
+QDL+QEGS GLMKS+EKFKP+AGCRF TYAYWWIRQ+++KAIFQ+SRT+RLPENV+ L
Sbjct: 358 GLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSL 417
Query: 1706 LKKTRDERRLCIQDG-HFPTNKELAQRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTI 1882
L K + ++ CIQ+G H P+ +ELA+RVGI VEKLE+LL TR P S+Q+ W DQD T
Sbjct: 418 LGKVLEAKKSCIQEGNHNPSKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTF 477
Query: 1883 QEITADPEVEIPDLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAM 2062
QE+TAD VEIPD+ +AKQ+MRQHV +LL +LN RERQII+ RYGI+D + +SLSEIG M
Sbjct: 478 QEVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLRERQIIRLRYGIEDGKQRSLSEIGGM 537
Query: 2063 YGITKERVRQLESRALDKLKACLSSHGLEAYINLLI 2170
+G++KERVRQLESRA KL+ L S GL AY LL+
Sbjct: 538 FGLSKERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 573
Score = 69.7 bits (169), Expect = 2e-08
Identities = 58/181 (32%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Frame = +3
Query: 549 SVLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIINGEKVVKHD-------- 704
SVLMLH+QA +TS+P TS+AR FP+SVL E ++++K + V+K D
Sbjct: 32 SVLMLHEQAVPAVTSVPITSVARHFPTSVLLQEQRDEFKPLL----HVLKEDKTSEATLD 87
Query: 705 ----GVGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSEENKYLATPVVSVTN 872
G + E+ + F + + +LL P + +F++ ++ A P +T
Sbjct: 88 RMQIETGASVHEDLDIDDFYPLVNGSKPQLL-NPDILDVFSSLQTG-----AKPSTPLTL 141
Query: 873 KTNVASGNKQILVEQTTSSSVQPGNVLALAKRAVIASRKAALLAEKSNILEFEFGQPPLL 1052
++ + NK + V+P NV+ALAK+A+ ASR+AA LAE S + +F + L
Sbjct: 142 ESLTTASNKHM--------DVEPCNVVALAKKALSASREAASLAEDSQSMGADFDESLSL 193
Query: 1053 G 1055
G
Sbjct: 194 G 194