BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon21_contig00045153
         (781 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAQ08229.1| RNA-dependent RNA polymerase, partial [Persimmon...    85   6e-14
dbj|BAQ08234.1| RNA-dependent RNA polymerase, partial [Persimmon...    83   2e-13
ref|YP_009112883.1| RNA-dependent RNA polymerase, partial [Persi...    81   9e-13
dbj|BAQ08217.1| RNA-dependent RNA polymerase, partial [Persimmon...    80   2e-12
ref|YP_009162622.1| 1b [Tobacco virus 1] gi|909720543|gb|AKT9475...    79   5e-12
gb|AGU69238.1| RNA dependent RNA polymerase [Blueberry virus A]        77   2e-11
ref|YP_224091.1| polymerase, partial [Mint virus 1] gi|57015210|...    76   2e-11
gb|AGU69228.1| RNA dependent RNA polymerase [Blueberry virus A]        76   3e-11
ref|YP_006638806.1| RNA dependent RNA polymerase [Blueberry viru...    76   3e-11
ref|YP_006628167.1| ORF 1a/1b fusion polyprotein [Blueberry viru...    76   3e-11
gb|AGW81833.1| RNA-dependent RNA polymerase, partial [Grapevine ...    75   4e-11
ref|YP_008858531.1| RdRp, partial [Carnation yellow fleck virus]...    75   4e-11
gb|ACM49863.1| RdRp protein, partial [Citrus tristeza virus]           75   7e-11
gb|AAZ06770.1| RNA-dependent RNA polymerase, partial [Grapevine ...    75   7e-11
gb|AFV34734.1| RNA-dependent RNA polymerase [Grapevine leafroll-...    75   7e-11
gb|ACJ54664.1| RNA-dependent RNA polymerase, partial [Grapevine ...    74   9e-11
gb|AAC40856.1| RNA-dependent RNA polymerase, partial [Grapevine ...    74   9e-11
emb|CAA74561.1| RNA polymerase [Grapevine leafroll-associated vi...    74   9e-11
gb|ABB90532.1| RNA-dependent RNA polymerase [Grapevine leafroll-...    74   1e-10
ref|YP_337912.1| RNA-dependent RNA polymerase, partial [Grapevin...    74   1e-10

>dbj|BAQ08229.1| RNA-dependent RNA polymerase, partial [Persimmon virus B]
          Length = 515

 Score = 84.7 bits (208), Expect = 6e-14
 Identities = 74/262 (28%), Positives = 111/262 (42%), Gaps = 5/262 (1%)
 Frame = -1

Query: 781 HEYLSLLDDAKIGQIDFMDEKCMMRE--THKAYCKNRVASKYLYKEWAAAASK--AGQGI 614
           H ++S  D      +    EK  +R    + AY K  V  +   K  +++ SK    Q I
Sbjct: 72  HNFMSRRDATFFNNLG--SEKVNIRNFGDYMAYFKVMVKREAKVKLDSSSLSKYPPAQNI 129

Query: 613 IYAGKTMNSYFSPTIRAMQIRTQAVMKDWVLIDIGLNERQLQSKLLQLGFDDTELLQFEN 434
           IY  K +NS FSP    +Q R  A +   +++  G+       KL  L  D  +    E 
Sbjct: 130 IYHSKLVNSIFSPMFSELQRRVIACLNRNIIVYTGMAPSVFARKLTVLVGDGNDKYVGEI 189

Query: 433 DFSEYDASLEQTINEFKFEWYRFIGVDPHKVDLMELKGGEWTARTNDGLIKFVQAYMTLS 254
           DFS+YD S ++ I  F+ E+YR  G+    + L         AR   G + F       S
Sbjct: 190 DFSKYDKSQDEYIKAFELEFYRLFGITEDMLSLWSAAEYFCNARVAGGSLSFKLQTQRRS 249

Query: 253 GRWDTLAGNNLCNMGIMSTFVDFVR-SSIRVALFKGDDSSFLISNIVFKKTIETMKKQRG 77
           G  +T  GN + N+ I+S + D  +  ++ VA   GDDS    S  +     + M    G
Sbjct: 250 GGANTFLGNTIVNLMILSLYYDLTKMDAVGVA---GDDSVLYCSEDIVNHA-QRMVNDIG 305

Query: 76  YKMKYYVGRPRYFASRFFTREC 11
            + K+      YF SRF    C
Sbjct: 306 MEAKFIKNSYGYFCSRFLVPVC 327


>dbj|BAQ08234.1| RNA-dependent RNA polymerase, partial [Persimmon virus B]
          Length = 522

 Score = 83.2 bits (204), Expect = 2e-13
 Identities = 61/208 (29%), Positives = 92/208 (44%), Gaps = 1/208 (0%)
 Frame = -1

Query: 622 QGIIYAGKTMNSYFSPTIRAMQIRTQAVMKDWVLIDIGLNERQLQSKLLQLGFDDTELLQ 443
           Q IIY  K +NS FSP    +Q R  A +   +++  G+       K+ +L     ++  
Sbjct: 127 QNIIYHSKFVNSIFSPLFSELQRRIIACLNRNIVVYTGMAPSAFAIKMTRLVGSGADMYV 186

Query: 442 FENDFSEYDASLEQTINEFKFEWYRFIGVDPHKVDLMELKGGEWTARTNDGLIKFVQAYM 263
            E DFS+YD S ++ I  F+  +YR  G+    +DL         AR + G + F     
Sbjct: 187 GEIDFSKYDKSQDEYIKAFEISFYRLFGITEEMLDLWSAAEYFCNARVSGGSLSFKLQTQ 246

Query: 262 TLSGRWDTLAGNNLCNMGIMSTFVDFVR-SSIRVALFKGDDSSFLISNIVFKKTIETMKK 86
             SG  +T  GN L N+ I+S + D  R  ++ VA   GDDS       +     + M  
Sbjct: 247 RRSGGANTFLGNTLVNLMILSLYYDLSRMDAVGVA---GDDSVLYCREDITNHA-QRMVN 302

Query: 85  QRGYKMKYYVGRPRYFASRFFTRECKPL 2
             G + K+      YF SRF    C+ L
Sbjct: 303 DIGMEAKFIKNSYGYFCSRFLVPVCERL 330


>ref|YP_009112883.1| RNA-dependent RNA polymerase, partial [Persimmon virus B]
           gi|740529667|dbj|BAQ08205.1| RNA-dependent RNA
           polymerase, partial [Persimmon virus B]
          Length = 515

 Score = 80.9 bits (198), Expect = 9e-13
 Identities = 70/260 (26%), Positives = 107/260 (41%), Gaps = 8/260 (3%)
 Frame = -1

Query: 781 HEYLSLLDDAKIGQI--------DFMDEKCMMRETHKAYCKNRVASKYLYKEWAAAASKA 626
           HE+L   D+     +        +F D   M +   K   K ++ S  L K   A     
Sbjct: 72  HEFLRKRDNTFFSNMSMEGVNIRNFSDYMSMFKVMVKREAKVKLDSSSLSKYPPA----- 126

Query: 625 GQGIIYAGKTMNSYFSPTIRAMQIRTQAVMKDWVLIDIGLNERQLQSKLLQLGFDDTELL 446
            Q IIY  K +NS FSP    +Q R  A + D +++  G+       KL +L  +  ++ 
Sbjct: 127 -QNIIYHSKLVNSIFSPIFSELQRRLIASLNDNIIVYTGMAPNVFARKLTRLVGNGQDMH 185

Query: 445 QFENDFSEYDASLEQTINEFKFEWYRFIGVDPHKVDLMELKGGEWTARTNDGLIKFVQAY 266
             E DFS+YD S ++ I  F+ E+Y   G+    +DL         AR   G + F    
Sbjct: 186 VGEIDFSKYDKSQDEYIKAFELEFYSLFGITAEMLDLWSAAEYFCNARVTGGALSFKLQT 245

Query: 265 MTLSGRWDTLAGNNLCNMGIMSTFVDFVRSSIRVALFKGDDSSFLISNIVFKKTIETMKK 86
              SG  +T  GN + N+ I+S + +     +      GDD S + S        + M  
Sbjct: 246 QRRSGGANTFLGNTIVNLMILSLYYNL--PLVDAVCVAGDD-SVMYSREDIVNHAQRMVN 302

Query: 85  QRGYKMKYYVGRPRYFASRF 26
             G + K+      YF SRF
Sbjct: 303 DIGMEAKFIKNSYGYFCSRF 322


>dbj|BAQ08217.1| RNA-dependent RNA polymerase, partial [Persimmon virus B]
          Length = 515

 Score = 80.1 bits (196), Expect = 2e-12
 Identities = 68/257 (26%), Positives = 106/257 (41%), Gaps = 1/257 (0%)
 Frame = -1

Query: 775 YLSLLDDAKIGQIDFMDEKCMMRETHKAYCKNRVASKYLYKEWAAAASKAGQGIIYAGKT 596
           + + L   K+   +F D     +   K   K ++ S  L K   A      Q IIY  K 
Sbjct: 82  FFNNLGSEKVNIRNFSDYMTYFKVMVKREAKVKLDSSSLSKYPPA------QNIIYHSKL 135

Query: 595 MNSYFSPTIRAMQIRTQAVMKDWVLIDIGLNERQLQSKLLQLGFDDTELLQFENDFSEYD 416
           +NS +SP    +Q R    +   +++  G+       KL  L  +  +    E DFS+YD
Sbjct: 136 INSIYSPMFSELQRRIVTCLNRNIIVYTGMAPSVFARKLTTLVGNGNDKFVGEIDFSKYD 195

Query: 415 ASLEQTINEFKFEWYRFIGVDPHKVDLMELKGGEWTARTNDGLIKFVQAYMTLSGRWDTL 236
            S ++ I  F+ E+YR  G+    + L         AR   G + F       SG  +T 
Sbjct: 196 KSQDEYIKAFELEFYRLFGITEDMLSLWSAAEYFCNARVAGGSLSFKLQTQRRSGGANTF 255

Query: 235 AGNNLCNMGIMSTFVDFVR-SSIRVALFKGDDSSFLISNIVFKKTIETMKKQRGYKMKYY 59
            GN + N+ I+S + D  +  ++ VA   GDDS    S  +     + M    G + K+ 
Sbjct: 256 LGNTIVNLMILSLYYDLTKMDAVGVA---GDDSILYCSEDIVNHA-QRMVNDIGMEAKFI 311

Query: 58  VGRPRYFASRFFTRECK 8
                YF SRF    C+
Sbjct: 312 KNSYGYFCSRFLVPVCE 328


>ref|YP_009162622.1| 1b [Tobacco virus 1] gi|909720543|gb|AKT94758.1| 1b [Tobacco virus
           1]
          Length = 468

 Score = 78.6 bits (192), Expect = 5e-12
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%)
 Frame = -1

Query: 628 AGQGIIYAGKTMNSYFSPTIRAMQIRTQAVMKDWVLIDIGLNERQLQSKLLQL-GFDDTE 452
           A Q I++  K +N+ +SP    ++ R  + +K  ++    ++ R     +  L G DD++
Sbjct: 137 AAQNIMFHAKAVNALYSPCFDELKNRFLSSLKKHIVFFTEMDNRTFARVVNALVGSDDSD 196

Query: 451 LLQFENDFSEYDASLEQTINEFKFEWYRFIGVDPHKVDL-MELKGGEWTAR--TNDGLIK 281
           L   E DFS++D S +  I EF+ E Y  +G D   + L ME   GE++A+  T DG + 
Sbjct: 197 LHVGEVDFSKFDKSQDIFIKEFEREVYTLLGFDEEMLQLWME---GEYSAKATTLDGKLS 253

Query: 280 FVQAYMTLSGRWDTLAGNNLCNMGIMSTFVDFVRSSIRVALFKGDDSSFLISNIVFKKTI 101
           F       SG  +T  GN++  +GI+S    + +    +ALF   D S + SN       
Sbjct: 254 FEVKNQRRSGASNTWIGNSIVTLGILSM---YYKVDELLALFVSGDDSLMYSNKPIANYA 310

Query: 100 ETMKKQRGYKMKYYVGRPRYFASRF 26
           E++  + G++ K+      YF S+F
Sbjct: 311 ESICVETGFETKFLSPSVPYFCSKF 335


>gb|AGU69238.1| RNA dependent RNA polymerase [Blueberry virus A]
          Length = 3621

 Score = 76.6 bits (187), Expect = 2e-11
 Identities = 62/238 (26%), Positives = 107/238 (44%), Gaps = 1/238 (0%)
 Frame = -1

Query: 736  DFMDEKCMMRETHKAYCKNRVASKYLYKEWAAAASKAGQGIIYAGKTMNSYFSPTIRAMQ 557
            D +D+  + +   K   K ++ S  + K   A      Q IIY  K +N  FSP    ++
Sbjct: 3193 DHLDDITLFKLMVKREAKVKLDSSCMSKHSPA------QNIIYHNKVVNLIFSPIFDVIK 3246

Query: 556  IRTQAVMKDWVLIDIGLNERQLQSKLL-QLGFDDTELLQFENDFSEYDASLEQTINEFKF 380
             R    +   +L  + +NE +L   +  Q+G +D    + E DFS++D S +  I  ++ 
Sbjct: 3247 SRIIYCLNPNILFYVDMNEEELAEWVYRQIGGEDI-YYKAELDFSKFDKSQDFYIKAYEK 3305

Query: 379  EWYRFIGVDPHKVDLMELKGGEWTARTNDGLIKFVQAYMTLSGRWDTLAGNNLCNMGIMS 200
              Y  +G DP  +D+         A++ D  + F  +    SG  +T  GN L  +G++ 
Sbjct: 3306 FMYEALGFDPELLDIWMEGEYHCRAQSRDRDLAFTLSGQRRSGGSNTWIGNTLVTLGLLC 3365

Query: 199  TFVDFVRSSIRVALFKGDDSSFLISNIVFKKTIETMKKQRGYKMKYYVGRPRYFASRF 26
             + D  ++  +  L  GDDS    S  +   T E +    G++ K+    P YF S+F
Sbjct: 3366 MYYDLTKA--KAVLLSGDDSIIFHSREI-PDTSEEIITDTGFETKFIRDAPAYFCSKF 3420


>ref|YP_224091.1| polymerase, partial [Mint virus 1] gi|57015210|gb|AAW32893.1|
           polymerase, partial [Mint virus 1]
          Length = 459

 Score = 76.3 bits (186), Expect = 2e-11
 Identities = 69/257 (26%), Positives = 118/257 (45%), Gaps = 6/257 (2%)
 Frame = -1

Query: 778 EYLSLLDDAKIGQIDFMDEKCMMRETHKAYCKNRVASKYLYKEWAAAASK--AGQGIIYA 605
           ++L+  D ++I  +     + +  ET   Y K  V      K  ++  +K  A Q I++ 
Sbjct: 76  KWLAKRDSSQIKSLQSELNRPLDLETSIHYFKLMVKRDAKVKLDSSCLTKHSAAQNIMFH 135

Query: 604 GKTMNSYFSPTIRAMQIRTQAVMKDWVLIDIGLNERQLQSKLLQL-GFDDTELLQFENDF 428
            K +N+ FSP     + R  + +K  ++    ++ R     +  L G DD++L   E DF
Sbjct: 136 AKAVNALFSPCFDEFKNRFMSCLKKHIVFFTEMDNRLFARVVNGLVGSDDSDLHVGEVDF 195

Query: 427 SEYDASLEQTINEFKFEWYRFIGVDPHKVDL-MELKGGEWTARTN--DGLIKFVQAYMTL 257
           S++D S +  I EF+ E Y  +G D   + L ME   GE+ A+    DG + F       
Sbjct: 196 SKFDKSQDVFIKEFEREIYSLLGFDSELLQLWME---GEYAAKATSLDGKLSFDVKNQRR 252

Query: 256 SGRWDTLAGNNLCNMGIMSTFVDFVRSSIRVALFKGDDSSFLISNIVFKKTIETMKKQRG 77
           SG  +T  GN++  +G++S    + R     ALF   D S + S    +   E +  + G
Sbjct: 253 SGASNTWIGNSVVTLGVLSM---YYRVDELSALFVSGDDSLMYSRSPIRNHAEAICIETG 309

Query: 76  YKMKYYVGRPRYFASRF 26
           ++ K+      YF S+F
Sbjct: 310 FETKFLSPSVPYFCSKF 326


>gb|AGU69228.1| RNA dependent RNA polymerase [Blueberry virus A]
          Length = 3576

 Score = 75.9 bits (185), Expect = 3e-11
 Identities = 60/238 (25%), Positives = 103/238 (43%)
 Frame = -1

Query: 739  IDFMDEKCMMRETHKAYCKNRVASKYLYKEWAAAASKAGQGIIYAGKTMNSYFSPTIRAM 560
            +DF+D+  + +   K   K ++ S  + K   A      Q II+  K +N  FSP    +
Sbjct: 3147 LDFLDDITLFKLMVKREAKVKLDSSCMSKHSPA------QNIIFHNKVVNLIFSPIFDTI 3200

Query: 559  QIRTQAVMKDWVLIDIGLNERQLQSKLLQLGFDDTELLQFENDFSEYDASLEQTINEFKF 380
            + R    +   +L  + +NE +L   + +    +    + E DFS++D S +  I  ++ 
Sbjct: 3201 KSRILYCLNPNILFYVDMNEEELAEWVYRRIGGEDIYYKAELDFSKFDKSQDFYIKAYER 3260

Query: 379  EWYRFIGVDPHKVDLMELKGGEWTARTNDGLIKFVQAYMTLSGRWDTLAGNNLCNMGIMS 200
              Y+  G DP  +D+         A + D  + F  +    SG  +T  GN L  +G++ 
Sbjct: 3261 FMYQAFGFDPELLDIWMEGEYHCRAMSRDRDLAFTLSAQRRSGGSNTWIGNTLVTLGLLC 3320

Query: 199  TFVDFVRSSIRVALFKGDDSSFLISNIVFKKTIETMKKQRGYKMKYYVGRPRYFASRF 26
             + D   S     L  GDDS    S  +   T E +    G++ K+    P YF S+F
Sbjct: 3321 MYYDL--SKANAVLLSGDDSIIFHSREI-PDTSEEIITDTGFETKFIRDAPAYFCSKF 3375


>ref|YP_006638806.1| RNA dependent RNA polymerase [Blueberry virus A]
          Length = 526

 Score = 75.9 bits (185), Expect = 3e-11
 Identities = 60/238 (25%), Positives = 103/238 (43%)
 Frame = -1

Query: 739 IDFMDEKCMMRETHKAYCKNRVASKYLYKEWAAAASKAGQGIIYAGKTMNSYFSPTIRAM 560
           +DF+D+  + +   K   K ++ S  + K   A      Q II+  K +N  FSP    +
Sbjct: 97  LDFLDDITLFKLMVKREAKVKLDSSCMSKHSPA------QNIIFHNKVVNLIFSPIFDTI 150

Query: 559 QIRTQAVMKDWVLIDIGLNERQLQSKLLQLGFDDTELLQFENDFSEYDASLEQTINEFKF 380
           + R    +   +L  + +NE +L   + +    +    + E DFS++D S +  I  ++ 
Sbjct: 151 KSRILYCLNPNILFYVDMNEEELAEWVYRRIGGEDIYYKAELDFSKFDKSQDFYIKAYER 210

Query: 379 EWYRFIGVDPHKVDLMELKGGEWTARTNDGLIKFVQAYMTLSGRWDTLAGNNLCNMGIMS 200
             Y+  G DP  +D+         A + D  + F  +    SG  +T  GN L  +G++ 
Sbjct: 211 FMYQAFGFDPELLDIWMEGEYHCRAMSRDRDLAFTLSAQRRSGGSNTWIGNTLVTLGLLC 270

Query: 199 TFVDFVRSSIRVALFKGDDSSFLISNIVFKKTIETMKKQRGYKMKYYVGRPRYFASRF 26
            + D   S     L  GDDS    S  +   T E +    G++ K+    P YF S+F
Sbjct: 271 MYYDL--SKANAVLLSGDDSIIFHSREI-PDTSEEIITDTGFETKFIRDAPAYFCSKF 325


>ref|YP_006628167.1| ORF 1a/1b fusion polyprotein [Blueberry virus A]
            gi|402230920|dbj|BAM37090.1| ORF 1a/1b fusion polyprotein
            [Blueberry virus A]
          Length = 3576

 Score = 75.9 bits (185), Expect = 3e-11
 Identities = 60/238 (25%), Positives = 103/238 (43%)
 Frame = -1

Query: 739  IDFMDEKCMMRETHKAYCKNRVASKYLYKEWAAAASKAGQGIIYAGKTMNSYFSPTIRAM 560
            +DF+D+  + +   K   K ++ S  + K   A      Q II+  K +N  FSP    +
Sbjct: 3147 LDFLDDITLFKLMVKREAKVKLDSSCMSKHSPA------QNIIFHNKVVNLIFSPIFDTI 3200

Query: 559  QIRTQAVMKDWVLIDIGLNERQLQSKLLQLGFDDTELLQFENDFSEYDASLEQTINEFKF 380
            + R    +   +L  + +NE +L   + +    +    + E DFS++D S +  I  ++ 
Sbjct: 3201 KSRILYCLNPNILFYVDMNEEELAEWVYRRIGGEDIYYKAELDFSKFDKSQDFYIKAYER 3260

Query: 379  EWYRFIGVDPHKVDLMELKGGEWTARTNDGLIKFVQAYMTLSGRWDTLAGNNLCNMGIMS 200
              Y+  G DP  +D+         A + D  + F  +    SG  +T  GN L  +G++ 
Sbjct: 3261 FMYQAFGFDPELLDIWMEGEYHCRAMSRDRDLAFTLSAQRRSGGSNTWIGNTLVTLGLLC 3320

Query: 199  TFVDFVRSSIRVALFKGDDSSFLISNIVFKKTIETMKKQRGYKMKYYVGRPRYFASRF 26
             + D   S     L  GDDS    S  +   T E +    G++ K+    P YF S+F
Sbjct: 3321 MYYDL--SKANAVLLSGDDSIIFHSREI-PDTSEEIITDTGFETKFIRDAPAYFCSKF 3375


>gb|AGW81833.1| RNA-dependent RNA polymerase, partial [Grapevine
           leafroll-associated virus 2]
          Length = 459

 Score = 75.5 bits (184), Expect = 4e-11
 Identities = 64/238 (26%), Positives = 103/238 (43%)
 Frame = -1

Query: 739 IDFMDEKCMMRETHKAYCKNRVASKYLYKEWAAAASKAGQGIIYAGKTMNSYFSPTIRAM 560
           ++  DE C  +   K   K ++ S  L K  AA      Q I++  KT+N+ FSP    +
Sbjct: 97  LEIDDEICRFKLMVKRDAKVKLDSSCLTKHSAA------QNIMFHRKTINAIFSPIFNEV 150

Query: 559 QIRTQAVMKDWVLIDIGLNERQLQSKLLQLGFDDTELLQFENDFSEYDASLEQTINEFKF 380
           + R    +K  +     +  R   S +  +  DD      E DFS+YD S +  +  F+ 
Sbjct: 151 KNRIMCCLKPNIKFFTEMTNRDFASVVSNMLGDDDVYHIGEVDFSKYDKSQDAFVKAFEE 210

Query: 379 EWYRFIGVDPHKVDLMELKGGEWTARTNDGLIKFVQAYMTLSGRWDTLAGNNLCNMGIMS 200
             Y+ +GVD   + +         A T DG + F       SG  +T  GN+L  +GI+S
Sbjct: 211 VMYKELGVDEELLAIWMCGERLSIANTLDGQLSFTIENQRKSGASNTWIGNSLVTLGILS 270

Query: 199 TFVDFVRSSIRVALFKGDDSSFLISNIVFKKTIETMKKQRGYKMKYYVGRPRYFASRF 26
            + D VR+    AL+   D S + S        + +    G++ K+      YF S+F
Sbjct: 271 LYYD-VRNF--EALYISGDDSLIFSRNEISNYADDICTDMGFETKFMSPSVPYFCSKF 325


>ref|YP_008858531.1| RdRp, partial [Carnation yellow fleck virus]
           gi|318101892|gb|ADV40938.1| RdRp, partial [Carnation
           yellow fleck virus]
          Length = 492

 Score = 75.5 bits (184), Expect = 4e-11
 Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 2/202 (0%)
 Frame = -1

Query: 622 QGIIYAGKTMNSYFSPTIRAMQIRTQAVMKDWVLIDIGLNERQLQSKLLQLGFDDTELLQ 443
           Q I++  KT+N+ FSP     + R  + +   ++    +    L S   ++   +     
Sbjct: 161 QNIMFHRKTINTLFSPCFDEFKNRVISCLNSNIVFFTEMTNSTLASIAKEMLGSENVYNV 220

Query: 442 FENDFSEYDASLEQTINEFKFEWYRFIGVDPHKVDLMELKGGEWT--ARTNDGLIKFVQA 269
            E DFS+YD S +  I  F+   Y+  G D   +D+     GE+T  A T DG + F   
Sbjct: 221 GEIDFSKYDKSQDAFIKSFERTLYKEFGFDEELLDVW--MQGEYTSNATTLDGQLSFSVD 278

Query: 268 YMTLSGRWDTLAGNNLCNMGIMSTFVDFVRSSIRVALFKGDDSSFLISNIVFKKTIETMK 89
           +   SG  +T  GN++  +GI+S F          ALF   D S + S    K + + M 
Sbjct: 279 HQRKSGASNTWIGNSIVTLGILSMFYHTCNFK---ALFVSGDDSLIFSESPIKNSADAMC 335

Query: 88  KQRGYKMKYYVGRPRYFASRFF 23
            + G++ K+      YF S+FF
Sbjct: 336 SELGFETKFLTPSVPYFCSKFF 357


>gb|ACM49863.1| RdRp protein, partial [Citrus tristeza virus]
          Length = 477

 Score = 74.7 bits (182), Expect = 7e-11
 Identities = 64/208 (30%), Positives = 98/208 (47%), Gaps = 7/208 (3%)
 Frame = -1

Query: 628 AGQGIIYAGKTMNSYFSPTIRAMQIRTQAVMKDWVLIDIGLNERQLQSKLLQLGFDDTEL 449
           A Q I++  K +N+ FSP     + R  + + D ++    +    L   + ++  DD  L
Sbjct: 128 AAQNIMFHKKFINAIFSPCFDEFKNRVLSSLNDNIVFFTEMTNAGLAEVIRRIVGDDDNL 187

Query: 448 LQFENDFSEYDASLEQTINEFKFEWYRFIGVDPHKVDL-MELKGGEWTAR--TNDGLIKF 278
              E DFS++D S +  I E++   Y   G D   +D+ ME   GE+ AR  T DG + F
Sbjct: 188 FVGEVDFSKFDKSQDLFIKEYERTLYSEFGFDTELLDVWME---GEYRARATTLDGQLSF 244

Query: 277 VQAYMTLSGRWDTLAGNNLCNMGIMSTFVDFVRSSIRVALFKGDD----SSFLISNIVFK 110
                  SG  +T  GN+L  +GI+S + D   S   + L  GDD    SS  ISN   +
Sbjct: 245 SVDGQRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSSEKISNFSSE 302

Query: 109 KTIETMKKQRGYKMKYYVGRPRYFASRF 26
             +ET     G++ K+      YF S+F
Sbjct: 303 ICLET-----GFETKFMSPSVPYFCSKF 325


>gb|AAZ06770.1| RNA-dependent RNA polymerase, partial [Grapevine
           leafroll-associated virus 2]
          Length = 459

 Score = 74.7 bits (182), Expect = 7e-11
 Identities = 63/238 (26%), Positives = 103/238 (43%)
 Frame = -1

Query: 739 IDFMDEKCMMRETHKAYCKNRVASKYLYKEWAAAASKAGQGIIYAGKTMNSYFSPTIRAM 560
           ++  DE C  +   K   K ++ S  L K  AA      Q I++  K++N+ FSP    +
Sbjct: 97  LEIDDEICRFKLMVKRDAKVKLDSSCLTKHSAA------QNIMFHRKSINAIFSPIFNEV 150

Query: 559 QIRTQAVMKDWVLIDIGLNERQLQSKLLQLGFDDTELLQFENDFSEYDASLEQTINEFKF 380
           + R    +K  +     +  R   S +  +  DD      E DFS+YD S +  +  F+ 
Sbjct: 151 KNRIMCCLKPNIKFFTEMTNRDFASVVSNMLGDDDVYHIGEVDFSKYDKSQDAFVKAFEE 210

Query: 379 EWYRFIGVDPHKVDLMELKGGEWTARTNDGLIKFVQAYMTLSGRWDTLAGNNLCNMGIMS 200
             Y+ +GVD   + +         A T DG + F       SG  +T  GN+L  +GI+S
Sbjct: 211 VMYKELGVDEELLAIWMCGERLSIANTLDGQLSFTIENQRKSGASNTWIGNSLVTLGILS 270

Query: 199 TFVDFVRSSIRVALFKGDDSSFLISNIVFKKTIETMKKQRGYKMKYYVGRPRYFASRF 26
            + D VR+    AL+   D S + S        + +    G++ K+      YF S+F
Sbjct: 271 LYYD-VRNF--EALYVSGDDSLIFSRSEISNYADDICTDMGFETKFMSPSVPYFCSKF 325


>gb|AFV34734.1| RNA-dependent RNA polymerase [Grapevine leafroll-associated virus
           2]
          Length = 500

 Score = 74.7 bits (182), Expect = 7e-11
 Identities = 61/238 (25%), Positives = 101/238 (42%)
 Frame = -1

Query: 739 IDFMDEKCMMRETHKAYCKNRVASKYLYKEWAAAASKAGQGIIYAGKTMNSYFSPTIRAM 560
           ++  DE C  +   K   K ++ S  L K  AA      Q I++  K++N+ FSP    +
Sbjct: 138 LEIDDEICRFKLMVKRDAKVKLDSSCLTKHSAA------QNIMFHRKSINAIFSPIFNEV 191

Query: 559 QIRTQAVMKDWVLIDIGLNERQLQSKLLQLGFDDTELLQFENDFSEYDASLEQTINEFKF 380
           + R  + +K  +     +  R   S +  +  DD      E DFS+YD S +  +  F+ 
Sbjct: 192 KNRIMSCLKPNIKFFTEMTNRDFASVVSNMLGDDDVYHIGEVDFSKYDKSQDAFVKSFEE 251

Query: 379 EWYRFIGVDPHKVDLMELKGGEWTARTNDGLIKFVQAYMTLSGRWDTLAGNNLCNMGIMS 200
             Y+ +GVD   + +         A T DG + F       SG  +T  GN+L  +GI+S
Sbjct: 252 VMYKELGVDEELLAIWMCGERLSIANTLDGQLSFTIENQRKSGASNTWIGNSLVTLGILS 311

Query: 199 TFVDFVRSSIRVALFKGDDSSFLISNIVFKKTIETMKKQRGYKMKYYVGRPRYFASRF 26
            + D        AL+   D S + S        + +    G++ K+      YF S+F
Sbjct: 312 LYYDVRHFE---ALYVSGDDSLIFSRNKISNYADDICADMGFETKFMSPSVPYFCSKF 366


>gb|ACJ54664.1| RNA-dependent RNA polymerase, partial [Grapevine
           leafroll-associated virus 2] gi|410519399|gb|AFV73371.1|
           RNA-dependent RNA polymerase, partial [Grapevine
           leafroll-associated virus 2]
          Length = 459

 Score = 74.3 bits (181), Expect = 9e-11
 Identities = 63/238 (26%), Positives = 103/238 (43%)
 Frame = -1

Query: 739 IDFMDEKCMMRETHKAYCKNRVASKYLYKEWAAAASKAGQGIIYAGKTMNSYFSPTIRAM 560
           ++  DE C  +   K   K ++ S  L K  AA      Q I++  K++N+ FSP    +
Sbjct: 97  LEIDDEICRFKLMVKRDAKVKLDSSCLTKHSAA------QNIMFHRKSINAIFSPIFNEV 150

Query: 559 QIRTQAVMKDWVLIDIGLNERQLQSKLLQLGFDDTELLQFENDFSEYDASLEQTINEFKF 380
           + R    +K  +     +  R   S +  +  DD      E DFS+YD S +  +  F+ 
Sbjct: 151 KNRIMCCLKPNIKFFTEMTNRDFASVVSNMLGDDDVYHIGEVDFSKYDKSQDAFVKAFEE 210

Query: 379 EWYRFIGVDPHKVDLMELKGGEWTARTNDGLIKFVQAYMTLSGRWDTLAGNNLCNMGIMS 200
             Y+ +GVD   + +         A T DG + F       SG  +T  GN+L  +GI+S
Sbjct: 211 VMYKELGVDEELLAIWMCGERLSIANTLDGQLSFTIENQRKSGASNTWIGNSLVTLGILS 270

Query: 199 TFVDFVRSSIRVALFKGDDSSFLISNIVFKKTIETMKKQRGYKMKYYVGRPRYFASRF 26
            + D VR+    AL+   D S + S        + +    G++ K+      YF S+F
Sbjct: 271 LYYD-VRNF--EALYISGDDSLIFSRSEISNYADDICTDMGFETKFMSPSVPYFCSKF 325


>gb|AAC40856.1| RNA-dependent RNA polymerase, partial [Grapevine
           leafroll-associated virus 2]
          Length = 459

 Score = 74.3 bits (181), Expect = 9e-11
 Identities = 63/238 (26%), Positives = 103/238 (43%)
 Frame = -1

Query: 739 IDFMDEKCMMRETHKAYCKNRVASKYLYKEWAAAASKAGQGIIYAGKTMNSYFSPTIRAM 560
           ++  DE C  +   K   K ++ S  L K  AA      Q I++  K++N+ FSP    +
Sbjct: 97  LEIDDEICRFKLMVKRDAKVKLDSSCLTKHSAA------QNIMFHRKSINAIFSPIFNEV 150

Query: 559 QIRTQAVMKDWVLIDIGLNERQLQSKLLQLGFDDTELLQFENDFSEYDASLEQTINEFKF 380
           + R    +K  +     +  R   S +  +  DD      E DFS+YD S +  +  F+ 
Sbjct: 151 KNRIMCCLKPNIKFFTEMTNRDFASVVSNMLGDDDVYHIGEVDFSKYDKSQDAFVKAFEE 210

Query: 379 EWYRFIGVDPHKVDLMELKGGEWTARTNDGLIKFVQAYMTLSGRWDTLAGNNLCNMGIMS 200
             Y+ +GVD   + +         A T DG + F       SG  +T  GN+L  +GI+S
Sbjct: 211 VMYKELGVDEELLAIWMCGERLSIANTLDGQLSFTIENQRKSGASNTWIGNSLVTLGILS 270

Query: 199 TFVDFVRSSIRVALFKGDDSSFLISNIVFKKTIETMKKQRGYKMKYYVGRPRYFASRF 26
            + D VR+    AL+   D S + S        + +    G++ K+      YF S+F
Sbjct: 271 LYYD-VRNF--EALYISGDDSLIFSRSEISNYADDICTDMGFETKFMSPSVPYFCSKF 325


>emb|CAA74561.1| RNA polymerase [Grapevine leafroll-associated virus 2]
          Length = 420

 Score = 74.3 bits (181), Expect = 9e-11
 Identities = 63/238 (26%), Positives = 103/238 (43%)
 Frame = -1

Query: 739 IDFMDEKCMMRETHKAYCKNRVASKYLYKEWAAAASKAGQGIIYAGKTMNSYFSPTIRAM 560
           ++  DE C  +   K   K ++ S  L K  AA      Q I++  K++N+ FSP    +
Sbjct: 58  LEIDDEICRFKLMVKRDAKVKLDSSCLTKHSAA------QNIMFHRKSINAIFSPIFNEV 111

Query: 559 QIRTQAVMKDWVLIDIGLNERQLQSKLLQLGFDDTELLQFENDFSEYDASLEQTINEFKF 380
           + R    +K  +     +  R   S +  +  DD      E DFS+YD S +  +  F+ 
Sbjct: 112 KNRIMCCLKPNIKFFTEMTNRDFASVVSNMLGDDDVYHIGEVDFSKYDKSQDAFVKAFEE 171

Query: 379 EWYRFIGVDPHKVDLMELKGGEWTARTNDGLIKFVQAYMTLSGRWDTLAGNNLCNMGIMS 200
             Y+ +GVD   + +         A T DG + F       SG  +T  GN+L  +GI+S
Sbjct: 172 VMYKELGVDEELLAIWMCGERLSIANTLDGQLSFTIENQRKSGASNTWIGNSLVTLGILS 231

Query: 199 TFVDFVRSSIRVALFKGDDSSFLISNIVFKKTIETMKKQRGYKMKYYVGRPRYFASRF 26
            + D VR+    AL+   D S + S        + +    G++ K+      YF S+F
Sbjct: 232 LYYD-VRNF--EALYISGDDSLIFSRSEISNYADDICTDMGFETKFMSPSVPYFCSKF 286


>gb|ABB90532.1| RNA-dependent RNA polymerase [Grapevine leafroll-associated virus
           2]
          Length = 420

 Score = 73.9 bits (180), Expect = 1e-10
 Identities = 60/238 (25%), Positives = 102/238 (42%)
 Frame = -1

Query: 739 IDFMDEKCMMRETHKAYCKNRVASKYLYKEWAAAASKAGQGIIYAGKTMNSYFSPTIRAM 560
           ++  DE C  +   K   K ++ S  L K  AA      Q I++  K++N+ FSP    +
Sbjct: 58  LEIDDEICRFKLMVKRDAKVKLDSSCLTKHSAA------QNIMFHRKSINAIFSPIFNEV 111

Query: 559 QIRTQAVMKDWVLIDIGLNERQLQSKLLQLGFDDTELLQFENDFSEYDASLEQTINEFKF 380
           + R  + +K  +     +  R   + +  +  DD      E DFS+YD S +  +  F+ 
Sbjct: 112 KNRIMSCLKPNIRFFTEMTNRDFAAVVSNMLGDDDVYHIGEVDFSKYDKSQDAFVKSFEE 171

Query: 379 EWYRFIGVDPHKVDLMELKGGEWTARTNDGLIKFVQAYMTLSGRWDTLAGNNLCNMGIMS 200
             Y+ +GVD   + +         A T DG + F       SG  +T  GN+L  +GI+S
Sbjct: 172 VMYKELGVDEELLAIWMCGERLSLANTLDGQLSFTIENQRKSGASNTWIGNSLVTLGILS 231

Query: 199 TFVDFVRSSIRVALFKGDDSSFLISNIVFKKTIETMKKQRGYKMKYYVGRPRYFASRF 26
            + D  +     AL+   D S + S        + +    G++ K+      YF S+F
Sbjct: 232 LYYDVRKFE---ALYISGDDSLIFSRDKISNYADDICADMGFETKFMSPSVPYFCSKF 286


>ref|YP_337912.1| RNA-dependent RNA polymerase, partial [Grapevine
           leafroll-associated virus 2] gi|60651024|gb|AAX31604.1|
           RNA-dependent RNA polymerase, partial [Grapevine
           leafroll-associated virus 2]
          Length = 459

 Score = 73.9 bits (180), Expect = 1e-10
 Identities = 63/238 (26%), Positives = 103/238 (43%)
 Frame = -1

Query: 739 IDFMDEKCMMRETHKAYCKNRVASKYLYKEWAAAASKAGQGIIYAGKTMNSYFSPTIRAM 560
           ++  DE C  +   K   K ++ S  L K  AA      Q I++  K++N+ FSP    +
Sbjct: 97  LEIDDEICRFKLMVKRDAKVKLDSSCLTKHSAA------QNIMFHRKSINAIFSPIFNEV 150

Query: 559 QIRTQAVMKDWVLIDIGLNERQLQSKLLQLGFDDTELLQFENDFSEYDASLEQTINEFKF 380
           + R    +K  +     +  R   S +  +  DD      E DFS+YD S +  +  F+ 
Sbjct: 151 KNRIMCCLKPNIKFFTEMTNRDFASIVSNMLGDDDVYHIGEVDFSKYDKSQDAFVKAFEE 210

Query: 379 EWYRFIGVDPHKVDLMELKGGEWTARTNDGLIKFVQAYMTLSGRWDTLAGNNLCNMGIMS 200
             Y+ +GVD   + +         A T DG + F       SG  +T  GN+L  +GI+S
Sbjct: 211 VMYKELGVDEELLAIWMCGERLSIANTLDGQLSFTIENQRKSGASNTWIGNSLVTLGILS 270

Query: 199 TFVDFVRSSIRVALFKGDDSSFLISNIVFKKTIETMKKQRGYKMKYYVGRPRYFASRF 26
            + D VR+    AL+   D S + S        + +    G++ K+      YF S+F
Sbjct: 271 LYYD-VRNF--EALYISGDDSLIFSRSEISNYADDICTDMGFETKFMSPSVPYFCSKF 325