BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon21_contig00037307
         (1142 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_008803255.1| PREDICTED: DNA-directed RNA polymerase IV su...   316   2e-83
ref|XP_010919205.1| PREDICTED: DNA-directed RNA polymerase IV su...   306   2e-80
ref|XP_009411449.1| PREDICTED: DNA-directed RNA polymerase IV su...   290   2e-75
ref|XP_009411452.1| PREDICTED: DNA-directed RNA polymerase IV su...   275   7e-71
ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV su...   225   6e-56
ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV su...   225   6e-56
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]   225   6e-56
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              223   3e-55
ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV su...   216   4e-53
ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV su...   213   3e-52
ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase IV su...   211   1e-51
gb|KMZ70232.1| DNA-directed RNA polymerase [Zostera marina]           206   2e-50
gb|ERN19396.1| hypothetical protein AMTR_s00069p00150990 [Ambore...   201   9e-49
emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group]           201   1e-48
ref|XP_008646771.1| PREDICTED: DNA dependent RNA polymerase D la...   198   6e-48
gb|ACL30983.1| mutant DNA dependent RNA polymerase D largest sub...   198   6e-48
gb|ACL30980.1| mutant DNA dependent RNA polymerase D largest sub...   198   6e-48
ref|NP_001182824.1| DNA dependent RNA polymerase D largest subun...   198   6e-48
gb|KRH77475.1| hypothetical protein GLYMA_01G215700 [Glycine max]     197   1e-47
ref|XP_006573756.1| PREDICTED: DNA-directed RNA polymerase IV su...   197   1e-47

>ref|XP_008803255.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Phoenix
           dactylifera]
          Length = 1567

 Score =  316 bits (810), Expect = 2e-83
 Identities = 162/333 (48%), Positives = 217/333 (65%), Gaps = 20/333 (6%)
 Frame = -2

Query: 943 MADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 764
           MA D I + M PS  L G++FD+LT +DIEK  HVNI +++D+ ++KLG+PNA S+C TC
Sbjct: 1   MASDQIIELMAPSGLLTGIEFDILTDDDIEKICHVNIVESNDVTNAKLGLPNASSRCQTC 60

Query: 763 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXK---- 596
           GS +  DCEGH G+IKLP  IYHPY + E++ ILNQICP C S                 
Sbjct: 61  GSKNTRDCEGHVGLIKLPRTIYHPYFVTEVIQILNQICPGCMSIKGDLQMKDSFDLETWE 120

Query: 595 --------------TISSIRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGSEKKW 458
                         TI+++RR  LK+   K+     Q++L      ++K     G  KKW
Sbjct: 121 KSIGEDHISEAFGKTIAALRRKFLKLCKSKVLF-SPQSVLDHARKFYLKKSLEVG--KKW 177

Query: 457 GTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEV 284
              D QA CK+C+RN+ +WYPA+KFK LS+D  GKK +++ AE N  +PKKF+N SL +V
Sbjct: 178 AKTDAQATCKYCARNATDWYPAVKFKLLSKDMLGKKSLSVIAEVNDKLPKKFQNKSLGDV 237

Query: 283 LPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSC 104
           LP+DFW+FVP    Q E++     NRIT+SP QAF LL+ELD EFI+QF  RR+++FLS 
Sbjct: 238 LPQDFWSFVPTFSQQQESNA----NRITVSPYQAFCLLKELDPEFIKQFALRRDVLFLSY 293

Query: 103 IPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYR 5
           +PVSPNC RVVET H ++DGP+LS D+STKAY+
Sbjct: 294 LPVSPNCHRVVETSHVHADGPQLSFDQSTKAYK 326


>ref|XP_010919205.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Elaeis
           guineensis]
          Length = 1569

 Score =  306 bits (784), Expect = 2e-80
 Identities = 156/333 (46%), Positives = 215/333 (64%), Gaps = 20/333 (6%)
 Frame = -2

Query: 943 MADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 764
           MA D I + M PS  L G+ FD+LT +DIEK  HV+I +++D+ ++KLG+PNA S+C TC
Sbjct: 1   MASDQIIELMAPSGLLTGITFDILTDDDIEKICHVSIVESNDVTNAKLGLPNASSRCQTC 60

Query: 763 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXK---- 596
           GS +  DCEGH G IKLP  IYHPY + E++ ILNQICP C S                 
Sbjct: 61  GSRNTRDCEGHVGFIKLPRTIYHPYFVTEVIQILNQICPGCMSIKGDLQIKDSFDLETWE 120

Query: 595 --------------TISSIRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGSEKKW 458
                         TI++++R +LK+   K++    Q+++  V   ++K+       KKW
Sbjct: 121 KFIGEDHVSEAFGKTIAAVKRKVLKLCKSKVSF-SPQSVIQHVKKVYLKNCL--EVRKKW 177

Query: 457 GTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEV 284
              D QA CK+C+RN+  WYPA+KFK  S+D  GKK ++I AE N  +PKKF+N SL +V
Sbjct: 178 AKTDAQATCKYCARNATNWYPAVKFKLFSKDMLGKKSLSIIAEVNEKLPKKFQNKSLCDV 237

Query: 283 LPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSC 104
           LP+DFW+FVP    Q E++     NRIT+SP QAF LL+ELD EFI+QF  RR+++FLS 
Sbjct: 238 LPQDFWSFVPSFSQQQESNA----NRITVSPYQAFCLLKELDPEFIKQFALRRDVLFLSY 293

Query: 103 IPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYR 5
           +PV+PNC RVVET + ++DGP+LS D+ TKAY+
Sbjct: 294 LPVAPNCHRVVETSYVHADGPQLSFDERTKAYK 326


>ref|XP_009411449.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
           [Musa acuminata subsp. malaccensis]
           gi|695047161|ref|XP_009411450.1| PREDICTED: DNA-directed
           RNA polymerase IV subunit 1 isoform X1 [Musa acuminata
           subsp. malaccensis] gi|695047163|ref|XP_009411451.1|
           PREDICTED: DNA-directed RNA polymerase IV subunit 1
           isoform X1 [Musa acuminata subsp. malaccensis]
          Length = 1569

 Score =  290 bits (742), Expect = 2e-75
 Identities = 146/331 (44%), Positives = 205/331 (61%), Gaps = 21/331 (6%)
 Frame = -2

Query: 934 DSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGST 755
           D I ++ +PS +L G+ FDL+T  DIEK  +VNI +A+++ S+KLG+PNA SQC TCGS 
Sbjct: 4   DLIMEQAIPSGRLSGIIFDLMTDADIEKICNVNIVEANEVTSAKLGLPNASSQCATCGSR 63

Query: 754 HIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISS--- 584
           +I DC+GH G +KLP  IYHP+ + E+VHILNQICP CK+               S    
Sbjct: 64  NIRDCDGHSGFVKLPKTIYHPFFVTEVVHILNQICPGCKTVKKDLKMKGSVILEASEKAI 123

Query: 583 ----------------IRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGT 452
                           ++R LLK+   K+ +P    L        +   K   + K W +
Sbjct: 124 GEGIYILEAFGKNLTVLQRRLLKLCRSKLLLPTRSILARNTKVRFINLKKILKTRKNWVS 183

Query: 451 VDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEVLP 278
            D+Q  CK+C+R +  WYP +KFK  S+D  G++ ++I AE N  +PKKF + SL EVLP
Sbjct: 184 KDSQVCCKYCARKANGWYPPVKFKISSKDILGRRSLSIIAEVNEKLPKKFHSQSLGEVLP 243

Query: 277 KDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIP 98
           +D+WNF+P +       +   P++I L+P Q F LL ELD EFI+QFV RREL+FLS +P
Sbjct: 244 EDYWNFIPKVSLL----QGAKPSKIDLTPHQVFCLLSELDPEFIQQFVSRRELLFLSYLP 299

Query: 97  VSPNCQRVVETIHTYSDGPRLSHDKSTKAYR 5
           ++PNCQRVVET H ++DGP+LS D+ T+AY+
Sbjct: 300 ITPNCQRVVETSHVFADGPKLSFDERTRAYK 330


>ref|XP_009411452.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
           [Musa acuminata subsp. malaccensis]
          Length = 1562

 Score =  275 bits (702), Expect = 7e-71
 Identities = 143/331 (43%), Positives = 200/331 (60%), Gaps = 21/331 (6%)
 Frame = -2

Query: 934 DSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGST 755
           D I ++ +PS +L G+ FDL+T  DIEK  +VNI +A+++ S+KLG+PNA SQC TCGS 
Sbjct: 4   DLIMEQAIPSGRLSGIIFDLMTDADIEKICNVNIVEANEVTSAKLGLPNASSQCATCGSR 63

Query: 754 HIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISS--- 584
           +I DC+GH G +KLP  IYHP+ + E+VHILNQICP CK+               S    
Sbjct: 64  NIRDCDGHSGFVKLPKTIYHPFFVTEVVHILNQICPGCKTVKKDLKMKGSVILEASEKAI 123

Query: 583 ----------------IRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGT 452
                           ++R LLK+   K+ +P    L        +   K   + K W +
Sbjct: 124 GEGIYILEAFGKNLTVLQRRLLKLCRSKLLLPTRSILARNTKVRFINLKKILKTRKNWVS 183

Query: 451 VDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEVLP 278
            D+Q       R +  WYP +KFK  S+D  G++ ++I AE N  +PKKF + SL EVLP
Sbjct: 184 KDSQ-------RKANGWYPPVKFKISSKDILGRRSLSIIAEVNEKLPKKFHSQSLGEVLP 236

Query: 277 KDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIP 98
           +D+WNF+P +       +   P++I L+P Q F LL ELD EFI+QFV RREL+FLS +P
Sbjct: 237 EDYWNFIPKVSLL----QGAKPSKIDLTPHQVFCLLSELDPEFIQQFVSRRELLFLSYLP 292

Query: 97  VSPNCQRVVETIHTYSDGPRLSHDKSTKAYR 5
           ++PNCQRVVET H ++DGP+LS D+ T+AY+
Sbjct: 293 ITPNCQRVVETSHVFADGPKLSFDERTRAYK 323


>ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
           [Vitis vinifera]
          Length = 1458

 Score =  225 bits (573), Expect = 6e-56
 Identities = 118/313 (37%), Positives = 169/313 (53%)
 Frame = -2

Query: 943 MADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 764
           M +D + ++ VPS  L+G+KFD+ T ED+EK S + I+  +++   KLGVPN   QC+TC
Sbjct: 1   MDNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTC 60

Query: 763 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISS 584
           G+     CEGHFGVIK P  I HPY + E+V ILN+ICP CKS                 
Sbjct: 61  GAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTR--------------- 105

Query: 583 IRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEE 404
                             Q    + A++  + L+  G             CK+C+ NS +
Sbjct: 106 ------------------QGQWVKGADSGSRRLRSKG-------------CKYCAANSND 134

Query: 403 WYPAIKFKTLSRDTNGKKCVAITAEFNVPKKFENMSLSEVLPKDFWNFVPMLPSQHENSE 224
           WYP +KFK  S+D   K  + +     +PKK +  S   VLP D+W+F+P  P Q EN  
Sbjct: 135 WYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEEN-- 192

Query: 223 SMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTYSDG 44
            ++PNR  LS  Q  YLL+++D  FI++FV R +  FL+C+PV+PN  RV E  H  S+G
Sbjct: 193 CLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNG 252

Query: 43  PRLSHDKSTKAYR 5
             L  D+ ++AY+
Sbjct: 253 QTLIFDQHSRAYK 265


>ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
           [Vitis vinifera]
          Length = 1460

 Score =  225 bits (573), Expect = 6e-56
 Identities = 118/313 (37%), Positives = 169/313 (53%)
 Frame = -2

Query: 943 MADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 764
           M +D + ++ VPS  L+G+KFD+ T ED+EK S + I+  +++   KLGVPN   QC+TC
Sbjct: 1   MDNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTC 60

Query: 763 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISS 584
           G+     CEGHFGVIK P  I HPY + E+V ILN+ICP CKS                 
Sbjct: 61  GAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTR--------------- 105

Query: 583 IRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEE 404
                             Q    + A++  + L+  G             CK+C+ NS +
Sbjct: 106 ------------------QGQWVKGADSGSRRLRSKG-------------CKYCAANSND 134

Query: 403 WYPAIKFKTLSRDTNGKKCVAITAEFNVPKKFENMSLSEVLPKDFWNFVPMLPSQHENSE 224
           WYP +KFK  S+D   K  + +     +PKK +  S   VLP D+W+F+P  P Q EN  
Sbjct: 135 WYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEEN-- 192

Query: 223 SMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTYSDG 44
            ++PNR  LS  Q  YLL+++D  FI++FV R +  FL+C+PV+PN  RV E  H  S+G
Sbjct: 193 CLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNG 252

Query: 43  PRLSHDKSTKAYR 5
             L  D+ ++AY+
Sbjct: 253 QTLIFDQHSRAYK 265


>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score =  225 bits (573), Expect = 6e-56
 Identities = 118/313 (37%), Positives = 169/313 (53%)
 Frame = -2

Query: 943 MADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 764
           M +D + ++ VPS  L+G+KFD+ T ED+EK S + I+  +++   KLGVPN   QC+TC
Sbjct: 1   MDNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTC 60

Query: 763 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISS 584
           G+     CEGHFGVIK P  I HPY + E+V ILN+ICP CKS                 
Sbjct: 61  GAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTR--------------- 105

Query: 583 IRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEE 404
                             Q    + A++  + L+  G             CK+C+ NS +
Sbjct: 106 ------------------QGQWVKGADSGSRRLRSKG-------------CKYCAANSND 134

Query: 403 WYPAIKFKTLSRDTNGKKCVAITAEFNVPKKFENMSLSEVLPKDFWNFVPMLPSQHENSE 224
           WYP +KFK  S+D   K  + +     +PKK +  S   VLP D+W+F+P  P Q EN  
Sbjct: 135 WYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEEN-- 192

Query: 223 SMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTYSDG 44
            ++PNR  LS  Q  YLL+++D  FI++FV R +  FL+C+PV+PN  RV E  H  S+G
Sbjct: 193 CLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNG 252

Query: 43  PRLSHDKSTKAYR 5
             L  D+ ++AY+
Sbjct: 253 QTLIFDQHSRAYK 265


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  223 bits (567), Expect = 3e-55
 Identities = 118/313 (37%), Positives = 165/313 (52%)
 Frame = -2

Query: 943 MADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 764
           M +D + ++ VPS  L+G+KFD+ T ED+EK S + I+  +++   KLGVPN   QC+TC
Sbjct: 1   MDNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTC 60

Query: 763 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISS 584
           G+     CEGHFGVIK P  I HPY + E+V ILN+ICP CKS                 
Sbjct: 61  GAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWV---------K 111

Query: 583 IRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEE 404
           +RRL  K                                           CK+C+ NS +
Sbjct: 112 VRRLRSK------------------------------------------GCKYCAANSND 129

Query: 403 WYPAIKFKTLSRDTNGKKCVAITAEFNVPKKFENMSLSEVLPKDFWNFVPMLPSQHENSE 224
           WYP +KFK  S+D   K  + +     +PKK +  S   VLP D+W+F+P  P Q EN  
Sbjct: 130 WYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEEN-- 187

Query: 223 SMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTYSDG 44
            ++PNR  LS  Q  YLL+++D  FI++FV R +  FL+C+PV+PN  RV E  H  S+G
Sbjct: 188 CLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNG 247

Query: 43  PRLSHDKSTKAYR 5
             L  D+ ++AY+
Sbjct: 248 QTLIFDQHSRAYK 260


>ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
           [Nelumbo nucifera]
          Length = 1489

 Score =  216 bits (549), Expect = 4e-53
 Identities = 120/317 (37%), Positives = 178/317 (56%), Gaps = 4/317 (1%)
 Frame = -2

Query: 943 MADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 764
           M DD   ++ VPS  L G++F++LT EDIEK S   I+ A+++   +LG PN  SQC+TC
Sbjct: 1   MDDDVFIEQQVPSGFLKGIQFNVLTEEDIEKCSVTAIDAANEVTDPRLGFPNPLSQCSTC 60

Query: 763 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISS 584
           G  ++ +C+GH G+IK    + +P+ I E V ILN ICP C+S                 
Sbjct: 61  GGKNLKNCDGHIGIIKFAVNVLNPFFISETVQILNSICPGCRSV---------------- 104

Query: 583 IRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSR--NS 410
             R  LK+K        +  L S   ++H                    +CK+C++  +S
Sbjct: 105 --RHDLKIK-------DTDTLKSLTMDSH-----------------QYKDCKYCAKQGSS 138

Query: 409 EEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEVLPKDFWNFVPMLPSQH 236
           +EWYP +KFK  S+D + K   ++  E N  +PKKF N +L EVLP D+W+ +   P Q 
Sbjct: 139 KEWYPTMKFKVASKDLSKKNTSSVIVEVNEKLPKKFANKNLGEVLPTDYWDCIQKDPEQE 198

Query: 235 ENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHT 56
           E+   + PNR +LSP Q + LL+ +D  F+++FV R E IFLSC PV+PNC R++E  H 
Sbjct: 199 ES--FLKPNRRSLSPFQVYCLLKSVDLRFLKKFVLRPEAIFLSCFPVTPNCHRIMELTHL 256

Query: 55  YSDGPRLSHDKSTKAYR 5
            S+G +L+ D+ TKA +
Sbjct: 257 SSNGHQLAFDERTKAMK 273


>ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
           brachyantha]
          Length = 1492

 Score =  213 bits (541), Expect = 3e-52
 Identities = 128/327 (39%), Positives = 179/327 (54%), Gaps = 14/327 (4%)
 Frame = -2

Query: 943 MADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 764
           M + S+  KM P A+L  +KF L+T  D+EKFS V+I +  D+ ++KLG+PN   QC TC
Sbjct: 27  MEELSLEVKM-PEAKLNAIKFSLMTSSDMEKFSSVSIIEMRDVTNAKLGLPNGAPQCATC 85

Query: 763 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISS 584
           G  +I DC+GHFGVIKL   +++PY I E+V +LNQICP C +                 
Sbjct: 86  GFRNIRDCDGHFGVIKLAATVHNPYFIEEVVQLLNQICPGCLT----------------- 128

Query: 583 IRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEE 404
                                           LK +G  K  GT   QA CK+CS++  +
Sbjct: 129 --------------------------------LKQNGETKGDGTTI-QATCKYCSKDGAK 155

Query: 403 WYPAIKFKTLS------------RDTNGKKCVAITAEF--NVPKKFENMSLSEVLPKDFW 266
            YP+I FK L+            R+T+    ++I AE    V  K +N    E+LP+DFW
Sbjct: 156 LYPSIIFKMLTSPRVTLSRSKLHRNTSVMDKMSIIAEVASRVTHKSKNKVPHEILPQDFW 215

Query: 265 NFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPN 86
           +F   LP  ++  +S    +I LSP Q F++L+++D E I Q  PRREL+FLSC+PV+PN
Sbjct: 216 DF---LPDDNQPPQSNVTKKI-LSPYQVFHMLKKIDPELINQVTPRRELLFLSCLPVTPN 271

Query: 85  CQRVVETIHTYSDGPRLSHDKSTKAYR 5
           C RVVE  + +SDGPRL+ D  TKAY+
Sbjct: 272 CHRVVEMPYGHSDGPRLAFDDRTKAYK 298


>ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Brachypodium
           distachyon] gi|721640272|ref|XP_010231681.1| PREDICTED:
           DNA-directed RNA polymerase IV subunit 1 [Brachypodium
           distachyon] gi|944071889|gb|KQK07373.1| hypothetical
           protein BRADI_2g34876 [Brachypodium distachyon]
          Length = 1470

 Score =  211 bits (536), Expect = 1e-51
 Identities = 122/315 (38%), Positives = 166/315 (52%), Gaps = 12/315 (3%)
 Frame = -2

Query: 913 VPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEG 734
           VP A+L  LKFDLL+  DIE  S  NI +ASD+ S+KLG+PNA  QC TCGS ++ DC+G
Sbjct: 14  VPMAELKALKFDLLSSADIETLSSANIIEASDVTSAKLGLPNAAPQCVTCGSQNVRDCDG 73

Query: 733 HFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISSIRRLLLKMKF 554
           H GVIKLP  +Y PY + ++V  LNQICP C +                           
Sbjct: 74  HSGVIKLPATVYSPYFLEQLVQFLNQICPGCWTP-------------------------- 107

Query: 553 EKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTL 374
                                  K +   K+      Q  CK+CS++    YP++ FK L
Sbjct: 108 -----------------------KQNRDTKRSDAATIQEPCKYCSKDG--LYPSVIFKVL 142

Query: 373 S------------RDTNGKKCVAITAEFNVPKKFENMSLSEVLPKDFWNFVPMLPSQHEN 230
           +            R+T+    V++TAE  V    +N S  EVLP D+WNFVP     H  
Sbjct: 143 TSPRITLSKSKLQRNTSVMDKVSVTAE--VINMSKNKSSLEVLPHDYWNFVP-----HNQ 195

Query: 229 SESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTYS 50
               +  +I LSP Q F++L+++D E I +F PRREL+FLSC+PV+PN  RV E  + +S
Sbjct: 196 PPQPNTTKILLSPYQVFHILKQVDLELITKFAPRRELLFLSCLPVTPNRHRVAEMPYRFS 255

Query: 49  DGPRLSHDKSTKAYR 5
           DGP L++D  TKAY+
Sbjct: 256 DGPSLAYDDRTKAYK 270


>gb|KMZ70232.1| DNA-directed RNA polymerase [Zostera marina]
          Length = 1426

 Score =  206 bits (525), Expect = 2e-50
 Identities = 119/317 (37%), Positives = 171/317 (53%), Gaps = 3/317 (0%)
 Frame = -2

Query: 946 IMADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTT 767
           +  D    +   P AQ+  +KF  +T ++IEK + +NI +ASDL S KLG PN    C T
Sbjct: 4   VKCDVQQNEVQAPVAQMKSIKFSFMTSDEIEKCASLNIMEASDLSSFKLGFPNTSPLCGT 63

Query: 766 CGSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTIS 587
           CGS  I +C+GH G+IKLP  IY+PY + EIV ILNQ+C  CKS            +   
Sbjct: 64  CGSLSIENCDGHSGMIKLPRQIYNPYFLSEIVTILNQVCVGCKSIKSNMRMKKCRTEHSM 123

Query: 586 SIRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNS- 410
           +  + L   K  +  +P      +          +    E K+G       C +C   S 
Sbjct: 124 NDSQYLKVYKLLRKIIPSPTKFKASPVIKKKCVKRLPERELKYG-------CSNCQAQSC 176

Query: 409 -EEWYPAIKFKTLSRDTNGKK-CVAITAEFNVPKKFENMSLSEVLPKDFWNFVPMLPSQH 236
            + WYP +KFK +  +  GK   + I     +P K++    S+V+  D+W+FVP   S+H
Sbjct: 177 IDNWYPRLKFKIMKDEPCGKSFSIVIKVNEKLPNKYKGRDPSDVIASDYWDFVP--ESKH 234

Query: 235 ENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHT 56
              +  D  ++ LSP QAFYLL+ELDK FIE++VPRR+L+FLS +PV+ N  RV E    
Sbjct: 235 -GLKLPDRTKMFLSPSQAFYLLKELDKHFIEKYVPRRDLLFLSYLPVTSNSHRVSEVTLP 293

Query: 55  YSDGPRLSHDKSTKAYR 5
           Y +GP+L  D+ T AY+
Sbjct: 294 YGNGPQLVFDQRTTAYK 310


>gb|ERN19396.1| hypothetical protein AMTR_s00069p00150990 [Amborella trichopoda]
          Length = 966

 Score =  201 bits (511), Expect = 9e-49
 Identities = 109/318 (34%), Positives = 176/318 (55%), Gaps = 5/318 (1%)
 Frame = -2

Query: 943 MADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 764
           M  D + + MVP   L  +KF+ +T EDIEKFS ++I++ S +   +LG+P    +C+TC
Sbjct: 82  METDELMEMMVPMGHLNAIKFEFMTREDIEKFSVLSISNTSGVTDPQLGLPTPDRKCSTC 141

Query: 763 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISS 584
           G++   +C+GHFG I+LP  IY+PYL++ +V ILN ICP CKS                 
Sbjct: 142 GASDNLNCDGHFGDIELPATIYNPYLVHALVQILNNICPGCKS----------------- 184

Query: 583 IRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSR---N 413
               + + K +K+ M                               ++ +CK+C++   N
Sbjct: 185 ----IRQKKGKKLKML------------------------------DKGDCKYCAKKGFN 210

Query: 412 SEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEVLPKDFWNFVPMLPSQ 239
            ++WYP++KFK ++RD +GKKC++I  E +  +P KF   +L+E+LP D+W F+P   + 
Sbjct: 211 EKQWYPSLKFKVVTRDFSGKKCLSIMMEVDPRLPAKFHGKALNELLPDDYWEFIPNGLNF 270

Query: 238 HENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIH 59
            E+S      +  LSP QA+ LL  LD     ++ PRR+ +FL+ +PV+PN  RV+E+ +
Sbjct: 271 LESS-----GKRILSPYQAYTLLESLDPGAFSKYAPRRQSLFLNSVPVTPNHHRVMESKN 325

Query: 58  TYSDGPRLSHDKSTKAYR 5
            ++DGP +  D  T A +
Sbjct: 326 LFTDGPHIMPDNRTMALK 343


>emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group]
          Length = 1407

 Score =  201 bits (510), Expect = 1e-48
 Identities = 116/316 (36%), Positives = 161/316 (50%), Gaps = 14/316 (4%)
 Frame = -2

Query: 910 PSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEGH 731
           P A+L  +KF L+T  D+EK S   I +  D+ ++KLG+PN   QC TCGS  I DC+GH
Sbjct: 11  PVAELNAIKFSLMTSSDMEKLSSATIIEMCDVTNAKLGLPNGAPQCATCGSRSIRDCDGH 70

Query: 730 FGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISSIRRLLLKMKFE 551
           FGVIKL   +++ Y I E+V +LNQICP C +                            
Sbjct: 71  FGVIKLAATVHNSYFIEEVVQLLNQICPGCLT---------------------------- 102

Query: 550 KITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTLS 371
                                LK +G  KK      Q  CK+CS++  + YP+I FK L+
Sbjct: 103 ---------------------LKQNGDTKKADGTTIQGTCKYCSKDGSKLYPSIIFKMLT 141

Query: 370 ------------RDTNGKKCVAITAEF--NVPKKFENMSLSEVLPKDFWNFVPMLPSQHE 233
                       R+T+    ++I AE    V  K +N +  E LP+DFW+F+P       
Sbjct: 142 SPRVTLSRSKLHRNTSVMDKMSIIAEVAGGVAHKSKNKAPHETLPQDFWDFIP----DDN 197

Query: 232 NSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTY 53
                +  +  LSP Q F++L++LD E I Q   RREL+FLSC+PV+PNC RV E  + +
Sbjct: 198 QPPIFNVTKKILSPYQVFHMLKKLDPELINQVTRRRELLFLSCLPVTPNCHRVAEMPYGH 257

Query: 52  SDGPRLSHDKSTKAYR 5
           SDGPRL+ D  TKAY+
Sbjct: 258 SDGPRLAFDDRTKAYK 273


>ref|XP_008646771.1| PREDICTED: DNA dependent RNA polymerase D largest subunit isoform
           X1 [Zea mays]
          Length = 1392

 Score =  198 bits (504), Expect = 6e-48
 Identities = 120/316 (37%), Positives = 169/316 (53%), Gaps = 14/316 (4%)
 Frame = -2

Query: 910 PSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEGH 731
           P A L  +KFDL+T  D+EK S ++I + SD+ S KLG+PN   QC TCGS    DC+GH
Sbjct: 8   PEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDGH 67

Query: 730 FGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISSIRRLLLKMKFE 551
           FGV KL   +++PY I ++VH LN+ICP C S                       +++ E
Sbjct: 68  FGVTKLAATVHNPYFIDDVVHFLNRICPGCLSPREGIDTK---------------RLERE 112

Query: 550 KITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTLS 371
           K+                                  QA CK+CS++  + YP+I FKTLS
Sbjct: 113 KV----------------------------------QATCKYCSKDGSKLYPSIVFKTLS 138

Query: 370 ------------RDTNGKKCVAITAEF--NVPKKFENMSLSEVLPKDFWNFVPMLPSQHE 233
                       R+ +  + ++I AE    +P + +     E LP DFW+FVP   S+++
Sbjct: 139 SPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSKGKGSLEGLPLDFWDFVP---SENK 195

Query: 232 NSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTY 53
             +S +  +I LSP Q FY+L++ D E I+QFV RREL+FLSC+PV+PNC RVVE  +  
Sbjct: 196 QVQS-NMTKIILSPYQVFYMLKKSDPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYGL 254

Query: 52  SDGPRLSHDKSTKAYR 5
            DG RL+ D  TKAY+
Sbjct: 255 PDG-RLTFDDRTKAYK 269


>gb|ACL30983.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-14 [Zea
           mays]
          Length = 352

 Score =  198 bits (504), Expect = 6e-48
 Identities = 120/316 (37%), Positives = 169/316 (53%), Gaps = 14/316 (4%)
 Frame = -2

Query: 910 PSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEGH 731
           P A L  +KFDL+T  D+EK S ++I + SD+ S KLG+PN   QC TCGS    DC+GH
Sbjct: 8   PEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDGH 67

Query: 730 FGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISSIRRLLLKMKFE 551
           FGV KL   +++PY I ++VH LN+ICP C S                       +++ E
Sbjct: 68  FGVTKLAATVHNPYFIDDVVHFLNRICPGCLSPREGIDTK---------------RLERE 112

Query: 550 KITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTLS 371
           K+                                  QA CK+CS++  + YP+I FKTLS
Sbjct: 113 KV----------------------------------QATCKYCSKDGSKLYPSIVFKTLS 138

Query: 370 ------------RDTNGKKCVAITAEF--NVPKKFENMSLSEVLPKDFWNFVPMLPSQHE 233
                       R+ +  + ++I AE    +P + +     E LP DFW+FVP   S+++
Sbjct: 139 SPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSKGKGSLEGLPLDFWDFVP---SENK 195

Query: 232 NSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTY 53
             +S +  +I LSP Q FY+L++ D E I+QFV RREL+FLSC+PV+PNC RVVE  +  
Sbjct: 196 QVQS-NMTKIILSPYQVFYMLKKSDPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYGL 254

Query: 52  SDGPRLSHDKSTKAYR 5
            DG RL+ D  TKAY+
Sbjct: 255 PDG-RLTFDDRTKAYK 269


>gb|ACL30980.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-1 [Zea
           mays]
          Length = 871

 Score =  198 bits (504), Expect = 6e-48
 Identities = 120/316 (37%), Positives = 169/316 (53%), Gaps = 14/316 (4%)
 Frame = -2

Query: 910 PSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEGH 731
           P A L  +KFDL+T  D+EK S ++I + SD+ S KLG+PN   QC TCGS    DC+GH
Sbjct: 8   PEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDGH 67

Query: 730 FGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISSIRRLLLKMKFE 551
           FGV KL   +++PY I ++VH LN+ICP C S                       +++ E
Sbjct: 68  FGVTKLAATVHNPYFIDDVVHFLNRICPGCLSPREGIDTK---------------RLERE 112

Query: 550 KITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTLS 371
           K+                                  QA CK+CS++  + YP+I FKTLS
Sbjct: 113 KV----------------------------------QATCKYCSKDGSKLYPSIVFKTLS 138

Query: 370 ------------RDTNGKKCVAITAEF--NVPKKFENMSLSEVLPKDFWNFVPMLPSQHE 233
                       R+ +  + ++I AE    +P + +     E LP DFW+FVP   S+++
Sbjct: 139 SPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSKGKGSLEGLPLDFWDFVP---SENK 195

Query: 232 NSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTY 53
             +S +  +I LSP Q FY+L++ D E I+QFV RREL+FLSC+PV+PNC RVVE  +  
Sbjct: 196 QVQS-NMTKIILSPYQVFYMLKKSDPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYGL 254

Query: 52  SDGPRLSHDKSTKAYR 5
            DG RL+ D  TKAY+
Sbjct: 255 PDG-RLTFDDRTKAYK 269


>ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
           gi|219662980|gb|ACL30979.1| DNA dependent RNA polymerase
           D largest subunit [Zea mays]
           gi|414869425|tpg|DAA47982.1| TPA: putative DNA dependent
           RNA polymerase D largest subunit family protein [Zea
           mays] gi|414869426|tpg|DAA47983.1| TPA: putative DNA
           dependent RNA polymerase D largest subunit family
           protein [Zea mays]
          Length = 1444

 Score =  198 bits (504), Expect = 6e-48
 Identities = 120/316 (37%), Positives = 169/316 (53%), Gaps = 14/316 (4%)
 Frame = -2

Query: 910 PSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEGH 731
           P A L  +KFDL+T  D+EK S ++I + SD+ S KLG+PN   QC TCGS    DC+GH
Sbjct: 8   PEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDGH 67

Query: 730 FGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISSIRRLLLKMKFE 551
           FGV KL   +++PY I ++VH LN+ICP C S                       +++ E
Sbjct: 68  FGVTKLAATVHNPYFIDDVVHFLNRICPGCLSPREGIDTK---------------RLERE 112

Query: 550 KITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTLS 371
           K+                                  QA CK+CS++  + YP+I FKTLS
Sbjct: 113 KV----------------------------------QATCKYCSKDGSKLYPSIVFKTLS 138

Query: 370 ------------RDTNGKKCVAITAEF--NVPKKFENMSLSEVLPKDFWNFVPMLPSQHE 233
                       R+ +  + ++I AE    +P + +     E LP DFW+FVP   S+++
Sbjct: 139 SPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSKGKGSLEGLPLDFWDFVP---SENK 195

Query: 232 NSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTY 53
             +S +  +I LSP Q FY+L++ D E I+QFV RREL+FLSC+PV+PNC RVVE  +  
Sbjct: 196 QVQS-NMTKIILSPYQVFYMLKKSDPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYGL 254

Query: 52  SDGPRLSHDKSTKAYR 5
            DG RL+ D  TKAY+
Sbjct: 255 PDG-RLTFDDRTKAYK 269


>gb|KRH77475.1| hypothetical protein GLYMA_01G215700 [Glycine max]
          Length = 1454

 Score =  197 bits (502), Expect = 1e-47
 Identities = 118/311 (37%), Positives = 156/311 (50%)
 Frame = -2

Query: 943 MADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 764
           M DD +     PS  +  +KFD+LT EDIE  S + IN A  +  S LG+PNA  +C TC
Sbjct: 1   MDDDLLQRNKTPSVVIKAIKFDVLTEEDIENISVLEINAAGQVTGSNLGLPNASDECATC 60

Query: 763 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISS 584
           G+     CEGHFGVIK PT I HPY + EI HILN+ICP CKS                 
Sbjct: 61  GTKDKKFCEGHFGVIKFPTPILHPYFMLEIAHILNKICPVCKS----------------- 103

Query: 583 IRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEE 404
                                        ++H K  G+   +GT     +C +CS     
Sbjct: 104 -----------------------------IRH-KSKGARLIYGT-KRSNDCNYCS----- 127

Query: 403 WYPAIKFKTLSRDTNGKKCVAITAEFNVPKKFENMSLSEVLPKDFWNFVPMLPSQHENSE 224
            YP+++F+  S D   +   AI  E    KK    +L   +P DFWNF+P    Q EN  
Sbjct: 128 VYPSMQFRVSSNDLFRR--TAIIVEVKASKK----TLGTEIPADFWNFIPCDAQQEENY- 180

Query: 223 SMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTYSDG 44
               NR  LSPVQ  YLL ++D +FIE+++PR+ L+ L+C PV+PNC RV E  +  S G
Sbjct: 181 ---VNRRVLSPVQVNYLLNDVDPDFIEKYIPRKNLLCLNCFPVTPNCHRVTEVPYAISSG 237

Query: 43  PRLSHDKSTKA 11
            RLS D  T++
Sbjct: 238 SRLSFDDRTRS 248


>ref|XP_006573756.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
           [Glycine max]
          Length = 1455

 Score =  197 bits (502), Expect = 1e-47
 Identities = 118/311 (37%), Positives = 156/311 (50%)
 Frame = -2

Query: 943 MADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 764
           M DD +     PS  +  +KFD+LT EDIE  S + IN A  +  S LG+PNA  +C TC
Sbjct: 1   MDDDLLQRNKTPSVVIKAIKFDVLTEEDIENISVLEINAAGQVTGSNLGLPNASDECATC 60

Query: 763 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXKTISS 584
           G+     CEGHFGVIK PT I HPY + EI HILN+ICP CKS                 
Sbjct: 61  GTKDKKFCEGHFGVIKFPTPILHPYFMLEIAHILNKICPVCKS----------------- 103

Query: 583 IRRLLLKMKFEKITMPQSQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEE 404
                                        ++H K  G+   +GT     +C +CS     
Sbjct: 104 -----------------------------IRH-KSKGARLIYGT-KRSNDCNYCS----- 127

Query: 403 WYPAIKFKTLSRDTNGKKCVAITAEFNVPKKFENMSLSEVLPKDFWNFVPMLPSQHENSE 224
            YP+++F+  S D   +   AI  E    KK    +L   +P DFWNF+P    Q EN  
Sbjct: 128 VYPSMQFRVSSNDLFRR--TAIIVEVKASKK----TLGTEIPADFWNFIPCDAQQEENY- 180

Query: 223 SMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTYSDG 44
               NR  LSPVQ  YLL ++D +FIE+++PR+ L+ L+C PV+PNC RV E  +  S G
Sbjct: 181 ---VNRRVLSPVQVNYLLNDVDPDFIEKYIPRKNLLCLNCFPVTPNCHRVTEVPYAISSG 237

Query: 43  PRLSHDKSTKA 11
            RLS D  T++
Sbjct: 238 SRLSFDDRTRS 248