BLASTX nr result
ID: Ophiopogon21_contig00034254
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon21_contig00034254
(768 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABA91475.1| retrotransposon protein, putative, unclassified [... 67 2e-24
ref|XP_002440822.1| hypothetical protein SORBIDRAFT_09g007400 [S... 82 9e-24
ref|XP_002489165.1| hypothetical protein SORBIDRAFT_0015s007030 ... 80 2e-23
ref|XP_008675553.1| PREDICTED: putative ribonuclease H protein A... 72 2e-23
ref|XP_002443403.1| hypothetical protein SORBIDRAFT_08g018960 [S... 80 7e-23
gb|AAX92720.1| retrotransposon protein, putative, unclassified [... 71 1e-22
emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa Japonica Group] gi... 74 2e-22
emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa Japonica Group] 73 3e-22
ref|XP_002443285.1| hypothetical protein SORBIDRAFT_08g016940 [S... 80 3e-22
emb|CAE04633.3| OSJNBa0028I23.15 [Oryza sativa Japonica Group] 69 3e-22
emb|CAH68023.1| OSIGBa0136O08-OSIGBa0153H12.1 [Oryza sativa Indi... 70 3e-22
gb|ABE77191.1| putative non-LTR retroelement reverse transcripta... 78 1e-21
gb|ABA99487.1| retrotransposon protein, putative, unclassified [... 66 5e-21
dbj|BAH79979.1| putative unclassified retrotransposon protein [O... 70 5e-21
ref|XP_008650633.1| PREDICTED: uncharacterized protein LOC103631... 68 6e-21
gb|ABA93441.1| retrotransposon protein, putative, unclassified [... 70 8e-21
gb|AAN05341.1| Putative non-LTR retroelement reverse transcripta... 69 8e-21
gb|ABF94719.1| retrotransposon protein, putative, unclassified [... 69 8e-21
gb|ABA96523.1| retrotransposon protein, putative, unclassified, ... 72 1e-20
ref|XP_009762742.1| PREDICTED: uncharacterized protein LOC104214... 72 4e-20
>gb|ABA91475.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 994
Score = 67.0 bits (162), Expect(3) = 2e-24
Identities = 34/83 (40%), Positives = 52/83 (62%)
Frame = -1
Query: 342 KSLSLGGRLTLLNSVLSATPFYYLSYFLLPKWVIQRIDRIRRAFL*RGPGPMQRGYNLVA 163
K L+ GGRL L+NSVLS+ P + LS+F +PK V+++ID R F + ++ Y L
Sbjct: 730 KLLTAGGRLVLINSVLSSLPMFMLSFFEIPKGVLEKIDCYRSRFYWQN-DQHKKKYRLAK 788
Query: 162 WSKVCRSKKDGSLGVLNLQHMNR 94
W+ +C+ K G LG+ NL+ N+
Sbjct: 789 WTVMCQPKIQGGLGIPNLEIQNK 811
Score = 58.9 bits (141), Expect(3) = 2e-24
Identities = 28/64 (43%), Positives = 44/64 (68%)
Frame = -2
Query: 644 LQYANDTLLFGRCNIAEAVVIKLILCCFEVWSGLSVNFYKSFIICIGDWDWHQ*ITTRIF 465
LQYA+DT++F ++A+A+ +KLIL FE SGL +NF+KS I C G ++ +++F
Sbjct: 628 LQYADDTVIFMSHDVAKAINMKLILTTFEQLSGLKINFHKSEIFCFGRAKENEAFYSQLF 687
Query: 464 GCPV 453
GC +
Sbjct: 688 GCKI 691
Score = 34.3 bits (77), Expect(3) = 2e-24
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = -3
Query: 439 QYLGITLGLGKLSKRDWFELIEKVEKKLQG*Q*KLV 332
+YLG+ + KL+ +DW E+ ++EKKL G + KL+
Sbjct: 697 RYLGLPMHTRKLNNKDWQEIKNRIEKKLGGWKGKLL 732
>ref|XP_002440822.1| hypothetical protein SORBIDRAFT_09g007400 [Sorghum bicolor]
gi|241946107|gb|EES19252.1| hypothetical protein
SORBIDRAFT_09g007400 [Sorghum bicolor]
Length = 835
Score = 81.6 bits (200), Expect(4) = 9e-24
Identities = 37/81 (45%), Positives = 60/81 (74%)
Frame = -1
Query: 339 SLSLGGRLTLLNSVLSATPFYYLSYFLLPKWVIQRIDRIRRAFL*RGPGPMQRGYNLVAW 160
++S+ GR TL++S L+ P Y++S +LLPK VI R+D+IRR F +G G ++ Y+L+ W
Sbjct: 404 NMSIAGRSTLISSSLNNAPIYHMSIYLLPKSVIGRLDKIRRNFFWQG-GSTKQKYHLIKW 462
Query: 159 SKVCRSKKDGSLGVLNLQHMN 97
+K+CRSKK G +G+ +++ MN
Sbjct: 463 TKICRSKKKGGIGIKDIRKMN 483
Score = 44.7 bits (104), Expect(4) = 9e-24
Identities = 27/72 (37%), Positives = 40/72 (55%)
Frame = -2
Query: 662 EAQIINLQYANDTLLFGRCNIAEAVVIKLILCCFEVWSGLSVNFYKSFIICIGDWDWHQ* 483
E I LQY +DT++ + ++ A +KL+L +E+ +GL +NF KS +I I D D
Sbjct: 295 EQGIAVLQYTDDTIICLKHDLVGARNMKLLLYIYELMAGLKINFSKSEVITINDEDNWDR 354
Query: 482 ITTRIFGCPVKT 447
IF C V T
Sbjct: 355 KYVDIFNCQVGT 366
Score = 28.1 bits (61), Expect(4) = 9e-24
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 442 LQYLGITLGLGKLSKRDWFELIEKVEKKL 356
++YLG+ + +L DW LI+K KKL
Sbjct: 369 IKYLGVPVSPSRLHVSDWSPLIDKSMKKL 397
Score = 23.5 bits (49), Expect(4) = 9e-24
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = -3
Query: 94 ALLAKWWWQM 65
+LL KWWW++
Sbjct: 485 SLLIKWWWKL 494
>ref|XP_002489165.1| hypothetical protein SORBIDRAFT_0015s007030 [Sorghum bicolor]
gi|241947177|gb|EES20322.1| hypothetical protein
SORBIDRAFT_0015s007030 [Sorghum bicolor]
Length = 933
Score = 80.1 bits (196), Expect(3) = 2e-23
Identities = 37/81 (45%), Positives = 57/81 (70%)
Frame = -1
Query: 339 SLSLGGRLTLLNSVLSATPFYYLSYFLLPKWVIQRIDRIRRAFL*RGPGPMQRGYNLVAW 160
SLS+ GR TL++S LS P Y +S +LLPK + ++D+IRR F +G G ++ Y+L+ W
Sbjct: 794 SLSIPGRKTLIDSTLSNAPLYQISIYLLPKTITYKLDKIRRTFFWQG-GDTKKKYHLIKW 852
Query: 159 SKVCRSKKDGSLGVLNLQHMN 97
+K+C+SKK G LG+ ++ MN
Sbjct: 853 TKICKSKKKGGLGIKCIRKMN 873
Score = 48.1 bits (113), Expect(3) = 2e-23
Identities = 27/70 (38%), Positives = 41/70 (58%)
Frame = -2
Query: 662 EAQIINLQYANDTLLFGRCNIAEAVVIKLILCCFEVWSGLSVNFYKSFIICIGDWDWHQ* 483
E + LQYA+DT++ + +I A +K++L FE+ +GL +NF KS +I I D D
Sbjct: 685 EKGVAVLQYADDTIICLKHSIEGARNLKMLLYMFELMAGLKINFLKSEVITINDEDNWAE 744
Query: 482 ITTRIFGCPV 453
+ IF C V
Sbjct: 745 VYAGIFNCQV 754
Score = 29.3 bits (64), Expect(3) = 2e-23
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 439 QYLGITLGLGKLSKRDWFELIEKVEKKL 356
+YLG+ + ++ RDW ++EK +KL
Sbjct: 760 KYLGVPVSPSRIHVRDWLPIVEKAYRKL 787
>ref|XP_008675553.1| PREDICTED: putative ribonuclease H protein At1g65750 [Zea mays]
Length = 310
Score = 72.4 bits (176), Expect(3) = 2e-23
Identities = 34/83 (40%), Positives = 55/83 (66%)
Frame = -1
Query: 342 KSLSLGGRLTLLNSVLSATPFYYLSYFLLPKWVIQRIDRIRRAFL*RGPGPMQRGYNLVA 163
K +S+GGRL L+NSVL++ + +S+F +PK V+++ID R F +G G ++ Y L
Sbjct: 159 KLMSVGGRLVLINSVLTSLAMFMMSFFKVPKGVLEKIDYFRSRFFWQGEGHKKK-YRLAR 217
Query: 162 WSKVCRSKKDGSLGVLNLQHMNR 94
W +C+ K+ G LG+LNL+ N+
Sbjct: 218 WDVICQPKEVGGLGILNLEVHNK 240
Score = 58.5 bits (140), Expect(3) = 2e-23
Identities = 29/62 (46%), Positives = 41/62 (66%)
Frame = -2
Query: 644 LQYANDTLLFGRCNIAEAVVIKLILCCFEVWSGLSVNFYKSFIICIGDWDWHQ*ITTRIF 465
LQ+A+DT+LF ++ +A +KLILC FE SGL +NF+KS + C G + TR+F
Sbjct: 57 LQHADDTILFMDHDLEKATNMKLILCAFEQLSGLKINFHKSEVFCYGKAKEDEGRYTRLF 116
Query: 464 GC 459
GC
Sbjct: 117 GC 118
Score = 26.6 bits (57), Expect(3) = 2e-23
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 448 LSLQYLGITLGLGKLSKRDWFELIEKVEKKLQG*Q*KLV 332
L +YLGI + +L+ DW + K EKKL + KL+
Sbjct: 123 LPFRYLGIPMHHRRLTIGDWKTVEAKFEKKLSSWKGKLM 161
>ref|XP_002443403.1| hypothetical protein SORBIDRAFT_08g018960 [Sorghum bicolor]
gi|241944096|gb|EES17241.1| hypothetical protein
SORBIDRAFT_08g018960 [Sorghum bicolor]
Length = 538
Score = 79.7 bits (195), Expect(3) = 7e-23
Identities = 42/92 (45%), Positives = 54/92 (58%)
Frame = -1
Query: 369 WKRSYKDDNKSLSLGGRLTLLNSVLSATPFYYLSYFLLPKWVIQRIDRIRRAFL*RGPGP 190
WK Y LS GGRL LLNSVLS+ P + +S+F +PK VI+ +D R +F +G
Sbjct: 229 WKAKY------LSYGGRLVLLNSVLSSLPMFMMSFFEIPKGVIKNLDNYRSSFFWQGSSD 282
Query: 189 MQRGYNLVAWSKVCRSKKDGSLGVLNLQHMNR 94
R Y L W +CR K G LG+LNLQ N+
Sbjct: 283 KHR-YRLAKWDILCRPKDQGGLGILNLQLQNK 313
Score = 55.1 bits (131), Expect(3) = 7e-23
Identities = 28/62 (45%), Positives = 39/62 (62%)
Frame = -2
Query: 644 LQYANDTLLFGRCNIAEAVVIKLILCCFEVWSGLSVNFYKSFIICIGDWDWHQ*ITTRIF 465
LQYA+DT++F + +A +KL+LC FE SGL +NF+KS I C G + T +F
Sbjct: 130 LQYADDTIIFIDHDPEQAQNLKLLLCAFEQLSGLKINFHKSEIFCYGATKEMESYYTSLF 189
Query: 464 GC 459
GC
Sbjct: 190 GC 191
Score = 20.4 bits (41), Expect(3) = 7e-23
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = -3
Query: 439 QYLGITLGLGKLSKRDWFELIEKVEKKL 356
+YLGI + +L +W ++ ++ ++KL
Sbjct: 199 RYLGIPMHHRQLLNSEWRKVEDRFKQKL 226
>gb|AAX92720.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group] gi|62701880|gb|AAX92953.1|
retrotransposon protein, putative, unclassified [Oryza
sativa Japonica Group] gi|77548739|gb|ABA91536.1|
retrotransposon protein, putative, unclassified [Oryza
sativa Japonica Group]
Length = 838
Score = 70.9 bits (172), Expect(3) = 1e-22
Identities = 38/83 (45%), Positives = 53/83 (63%)
Frame = -1
Query: 342 KSLSLGGRLTLLNSVLSATPFYYLSYFLLPKWVIQRIDRIRRAFL*RGPGPMQRGYNLVA 163
K S+GGRL L+NS LS+ P Y +S+F LPK V +++D RR FL + + R Y+LV
Sbjct: 750 KLQSIGGRLILINSSLSSVPMYMISFFKLPKGVKEKMDFFRRRFLWQEDQGI-RKYHLVQ 808
Query: 162 WSKVCRSKKDGSLGVLNLQHMNR 94
W +C + G LGVL+L MN+
Sbjct: 809 WPIICSPRDQGGLGVLDLDIMNK 831
Score = 52.8 bits (125), Expect(3) = 1e-22
Identities = 29/71 (40%), Positives = 41/71 (57%)
Frame = -2
Query: 656 QIINLQYANDTLLFGRCNIAEAVVIKLILCCFEVWSGLSVNFYKSFIICIGDWDWHQ*IT 477
+++ LQYA+DT+ N A +K ILC FE SGL +NF KS + CIG+ +
Sbjct: 644 KVVILQYADDTIFLLPDNETYAKNLKYILCLFEQLSGLKINFNKSEVFCIGEAADKAEVF 703
Query: 476 TRIFGCPVKTL 444
++IF C V L
Sbjct: 704 SQIFTCSVGVL 714
Score = 30.8 bits (68), Expect(3) = 1e-22
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -3
Query: 448 LSLQYLGITLGLGKLSKRDWFELIEKVEKKLQG*Q*KL 335
L ++YLGI L +++K+DW K+E KL Q KL
Sbjct: 714 LPMKYLGIPLDQKRITKKDWRNAENKMESKLGCWQGKL 751
>emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa Japonica Group]
gi|38346911|emb|CAE03883.2| OSJNBb0015N08.11 [Oryza
sativa Japonica Group]
Length = 1026
Score = 73.9 bits (180), Expect(3) = 2e-22
Identities = 39/80 (48%), Positives = 53/80 (66%)
Frame = -1
Query: 333 SLGGRLTLLNSVLSATPFYYLSYFLLPKWVIQRIDRIRRAFL*RGPGPMQRGYNLVAWSK 154
S+GGRL LLNS LS+ P Y +S++ LPK V +RID R+ FL + + R Y+LV W
Sbjct: 591 SIGGRLILLNSTLSSVPMYMISFYRLPKGVQERIDYFRKRFLWQEDQGI-RKYHLVNWPL 649
Query: 153 VCRSKKDGSLGVLNLQHMNR 94
VC + G LGVL+L+ MN+
Sbjct: 650 VCSPRDQGGLGVLDLEAMNK 669
Score = 54.3 bits (129), Expect(3) = 2e-22
Identities = 30/77 (38%), Positives = 42/77 (54%)
Frame = -2
Query: 674 GIRPEAQIINLQYANDTLLFGRCNIAEAVVIKLILCCFEVWSGLSVNFYKSFIICIGDWD 495
G + +I LQYA+DT+ + A +K ILC FE SGL +NF KS + C G+
Sbjct: 476 GTNGDNKIAILQYADDTIFLINDKLDHAKNLKYILCLFEQLSGLKINFNKSEVFCFGEAK 535
Query: 494 WHQ*ITTRIFGCPVKTL 444
Q + + IF C V +L
Sbjct: 536 EKQDLYSNIFTCKVGSL 552
Score = 25.8 bits (55), Expect(3) = 2e-22
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 448 LSLQYLGITLGLGKLSKRDWFELIEKVEKKL 356
L L+YLGI + ++ +DW K+E KL
Sbjct: 552 LPLKYLGIPIDQKRILNKDWKLAENKMEHKL 582
>emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa Japonica Group]
Length = 1140
Score = 73.2 bits (178), Expect(3) = 3e-22
Identities = 35/79 (44%), Positives = 52/79 (65%)
Frame = -1
Query: 342 KSLSLGGRLTLLNSVLSATPFYYLSYFLLPKWVIQRIDRIRRAFL*RGPGPMQRGYNLVA 163
K LSLGGRLTL+NSVLS+ P Y +S+ +P V++++D +R F +G G ++ Y L
Sbjct: 1014 KLLSLGGRLTLINSVLSSLPMYMMSFLAIPSGVLKKLDYLRSRFYWQGDGHKKK-YQLAK 1072
Query: 162 WSKVCRSKKDGSLGVLNLQ 106
W +CR K G LG+ +L+
Sbjct: 1073 WDIICRPKDQGRLGIHDLE 1091
Score = 47.8 bits (112), Expect(3) = 3e-22
Identities = 24/64 (37%), Positives = 39/64 (60%)
Frame = -2
Query: 644 LQYANDTLLFGRCNIAEAVVIKLILCCFEVWSGLSVNFYKSFIICIGDWDWHQ*ITTRIF 465
LQY +D +LF ++ +A +K +L FE SGL +NF+KS + C G+ ++ ++F
Sbjct: 912 LQYVDDIVLFMNHDLEKAQNMKSVLLAFEQLSGLKINFHKSELYCFGEALEYRDQYAQLF 971
Query: 464 GCPV 453
GC V
Sbjct: 972 GCQV 975
Score = 32.3 bits (72), Expect(3) = 3e-22
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -3
Query: 439 QYLGITLGLGKLSKRDWFELIEKVEKKLQG*Q*KLV 332
+YLGI + KL +W E++E+ EKKL + KL+
Sbjct: 981 RYLGIPIHCRKLRNAEWKEVVERFEKKLSSWKGKLL 1016
>ref|XP_002443285.1| hypothetical protein SORBIDRAFT_08g016940 [Sorghum bicolor]
gi|241943978|gb|EES17123.1| hypothetical protein
SORBIDRAFT_08g016940 [Sorghum bicolor]
Length = 663
Score = 79.7 bits (195), Expect(3) = 3e-22
Identities = 42/92 (45%), Positives = 54/92 (58%)
Frame = -1
Query: 369 WKRSYKDDNKSLSLGGRLTLLNSVLSATPFYYLSYFLLPKWVIQRIDRIRRAFL*RGPGP 190
WK Y LS GGRL LLNSVLS+ P + +S+F +PK VI+ +D R +F +G
Sbjct: 336 WKAKY------LSYGGRLVLLNSVLSSLPMFMMSFFEIPKGVIKNLDNYRSSFFWQGSSD 389
Query: 189 MQRGYNLVAWSKVCRSKKDGSLGVLNLQHMNR 94
R Y L W +CR K G LG+LNLQ N+
Sbjct: 390 KHR-YRLAKWDILCRPKDQGGLGILNLQLQNK 420
Score = 53.1 bits (126), Expect(3) = 3e-22
Identities = 27/62 (43%), Positives = 38/62 (61%)
Frame = -2
Query: 644 LQYANDTLLFGRCNIAEAVVIKLILCCFEVWSGLSVNFYKSFIICIGDWDWHQ*ITTRIF 465
LQY +DT++F + +A +KL+LC FE SGL +NF+KS I C G + T +F
Sbjct: 237 LQYVDDTIIFIDHDPEQAQNLKLLLCAFEQLSGLKINFHKSEIFCYGAAKEMESYYTSLF 296
Query: 464 GC 459
GC
Sbjct: 297 GC 298
Score = 20.4 bits (41), Expect(3) = 3e-22
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = -3
Query: 439 QYLGITLGLGKLSKRDWFELIEKVEKKL 356
+YLGI + +L +W ++ ++ ++KL
Sbjct: 306 RYLGIPMHHRQLLNSEWRKVEDRFKQKL 333
>emb|CAE04633.3| OSJNBa0028I23.15 [Oryza sativa Japonica Group]
Length = 593
Score = 69.3 bits (168), Expect(3) = 3e-22
Identities = 35/83 (42%), Positives = 53/83 (63%)
Frame = -1
Query: 342 KSLSLGGRLTLLNSVLSATPFYYLSYFLLPKWVIQRIDRIRRAFL*RGPGPMQRGYNLVA 163
K LS+GGRL L+NSVLS+ Y LS+F +PK +I+++D R F + ++ Y L
Sbjct: 232 KLLSVGGRLVLINSVLSSLAMYMLSFFEVPKGIIKKLDYYRSRFFWQS-DEHKKKYRLAR 290
Query: 162 WSKVCRSKKDGSLGVLNLQHMNR 94
WS +C+ K+ G LG+ NL+ N+
Sbjct: 291 WSVLCKPKECGGLGIQNLEVQNK 313
Score = 51.2 bits (121), Expect(3) = 3e-22
Identities = 26/62 (41%), Positives = 39/62 (62%)
Frame = -2
Query: 644 LQYANDTLLFGRCNIAEAVVIKLILCCFEVWSGLSVNFYKSFIICIGDWDWHQ*ITTRIF 465
LQYA+DT+LF ++ +A +KL+L FE SGL +NF+KS ++C G + +F
Sbjct: 130 LQYADDTILFMEHDLEDAKNLKLVLSAFERLSGLKINFHKSELLCFGKAIEVEREYALLF 189
Query: 464 GC 459
GC
Sbjct: 190 GC 191
Score = 32.7 bits (73), Expect(3) = 3e-22
Identities = 15/38 (39%), Positives = 26/38 (68%)
Frame = -3
Query: 445 SLQYLGITLGLGKLSKRDWFELIEKVEKKLQG*Q*KLV 332
+L+YLG+ + KLS +DW E+ E+ +K+L + KL+
Sbjct: 197 TLKYLGLPMHYRKLSNKDWKEVEERFQKRLGSWKGKLL 234
>emb|CAH68023.1| OSIGBa0136O08-OSIGBa0153H12.1 [Oryza sativa Indica Group]
Length = 1171
Score = 70.5 bits (171), Expect(3) = 3e-22
Identities = 34/79 (43%), Positives = 51/79 (64%)
Frame = -1
Query: 342 KSLSLGGRLTLLNSVLSATPFYYLSYFLLPKWVIQRIDRIRRAFL*RGPGPMQRGYNLVA 163
K LSLGGRLTL+NSVLS+ P Y +S+ +P V++++D +R F +G G ++ Y L
Sbjct: 903 KLLSLGGRLTLINSVLSSLPMYMMSFLAIPSGVLKKLDYLRSRFYWQGDGHKKK-YRLAK 961
Query: 162 WSKVCRSKKDGSLGVLNLQ 106
W +CR K LG+ +L+
Sbjct: 962 WDIICRPKDQQGLGIHDLE 980
Score = 50.1 bits (118), Expect(3) = 3e-22
Identities = 25/64 (39%), Positives = 40/64 (62%)
Frame = -2
Query: 644 LQYANDTLLFGRCNIAEAVVIKLILCCFEVWSGLSVNFYKSFIICIGDWDWHQ*ITTRIF 465
LQY +D +LF ++ +A +KL+L FE SGL +NF+KS + C G+ ++ ++F
Sbjct: 801 LQYVDDIVLFMNHDLEKAQNMKLVLLAFEQLSGLKINFHKSELYCFGEALEYRDQYAQLF 860
Query: 464 GCPV 453
GC V
Sbjct: 861 GCQV 864
Score = 32.3 bits (72), Expect(3) = 3e-22
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -3
Query: 439 QYLGITLGLGKLSKRDWFELIEKVEKKLQG*Q*KLV 332
+YLGI + KL +W E++E+ EKKL + KL+
Sbjct: 870 RYLGIPIHCRKLRNAEWKEVVERFEKKLSSWKGKLL 905
>gb|ABE77191.1| putative non-LTR retroelement reverse transcriptase [Sorghum bicolor]
Length = 1505
Score = 77.8 bits (190), Expect(3) = 1e-21
Identities = 39/83 (46%), Positives = 51/83 (61%)
Frame = -1
Query: 342 KSLSLGGRLTLLNSVLSATPFYYLSYFLLPKWVIQRIDRIRRAFL*RGPGPMQRGYNLVA 163
K LS GGRL LLNSVLS+ P + +S+F +PK VI+ +D R F +G + Y L
Sbjct: 1298 KYLSYGGRLVLLNSVLSSLPMFMMSFFEIPKGVIKNLDHYRSRFFWQGSSDKHK-YRLAK 1356
Query: 162 WSKVCRSKKDGSLGVLNLQHMNR 94
W +CR K G LG+LNLQ N+
Sbjct: 1357 WDIICRPKDQGGLGILNLQLQNK 1379
Score = 53.1 bits (126), Expect(3) = 1e-21
Identities = 27/62 (43%), Positives = 38/62 (61%)
Frame = -2
Query: 644 LQYANDTLLFGRCNIAEAVVIKLILCCFEVWSGLSVNFYKSFIICIGDWDWHQ*ITTRIF 465
LQYA+DT++F + +A +KL+LC FE SGL +NF+KS I C G + T +
Sbjct: 1196 LQYADDTIIFLDHDPEQAKNLKLLLCAFEQLSGLKINFHKSEIFCYGAAKEMESFYTNLL 1255
Query: 464 GC 459
GC
Sbjct: 1256 GC 1257
Score = 20.4 bits (41), Expect(3) = 1e-21
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -3
Query: 436 YLGITLGLGKLSKRDWFELIEKVEKKL 356
YLGI + +L +W ++ ++ ++KL
Sbjct: 1266 YLGIPMHHRQLLNSEWSKVEDRFKQKL 1292
>gb|ABA99487.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1627
Score = 65.9 bits (159), Expect(3) = 5e-21
Identities = 35/83 (42%), Positives = 52/83 (62%)
Frame = -1
Query: 342 KSLSLGGRLTLLNSVLSATPFYYLSYFLLPKWVIQRIDRIRRAFL*RGPGPMQRGYNLVA 163
K L++GGR+ L+NS +S+ P Y +S + LP V ++ID RR FL + + R Y+LV
Sbjct: 1216 KLLAIGGRVALINSSISSVPLYMMSLYSLPCGVREKIDFYRRRFLWQEDQGI-RKYHLVK 1274
Query: 162 WSKVCRSKKDGSLGVLNLQHMNR 94
W +C K G LG+L+L MN+
Sbjct: 1275 WLVICLPKDQGGLGILDLDVMNK 1297
Score = 48.9 bits (115), Expect(3) = 5e-21
Identities = 25/67 (37%), Positives = 40/67 (59%)
Frame = -2
Query: 644 LQYANDTLLFGRCNIAEAVVIKLILCCFEVWSGLSVNFYKSFIICIGDWDWHQ*ITTRIF 465
LQY +DT+ + ++ A +K ILC FE +GL VNF+KS + C+G+ Q +++F
Sbjct: 1114 LQYDDDTICLIQDSLEYAKNLKFILCIFEQLTGLKVNFHKSEVFCLGEAAERQDSYSQMF 1173
Query: 464 GCPVKTL 444
C + L
Sbjct: 1174 TCQIGRL 1180
Score = 34.3 bits (77), Expect(3) = 5e-21
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = -3
Query: 451 RLSLQYLGITLGLGKLSKRDWFELIEKVEKKLQG*Q*KLV 332
RL ++YLG+ + ++ +DW + EK+EKKL Q KL+
Sbjct: 1179 RLPMKYLGVPINQVRIHNKDWKPVEEKIEKKLGCWQGKLL 1218
>dbj|BAH79979.1| putative unclassified retrotransposon protein [Oryza sativa Indica
Group]
Length = 1283
Score = 70.5 bits (171), Expect(2) = 5e-21
Identities = 37/90 (41%), Positives = 54/90 (60%)
Frame = -1
Query: 366 KRSYKDDNKSLSLGGRLTLLNSVLSATPFYYLSYFLLPKWVIQRIDRIRRAFL*RGPGPM 187
KR K LS GGRLTL+NSVLS+ P Y +S+F +P+ V++++D R F +
Sbjct: 1139 KRLSSWKGKLLSTGGRLTLINSVLSSLPLYMMSFFAIPRGVLKKLDYFRSRFYWQ-CDDQ 1197
Query: 186 QRGYNLVAWSKVCRSKKDGSLGVLNLQHMN 97
++ Y L WS +CR K+ G LG+ +L N
Sbjct: 1198 KKKYRLTKWSIMCRPKEQGGLGIHDLDMKN 1227
Score = 58.5 bits (140), Expect(2) = 5e-21
Identities = 29/62 (46%), Positives = 41/62 (66%)
Frame = -2
Query: 644 LQYANDTLLFGRCNIAEAVVIKLILCCFEVWSGLSVNFYKSFIICIGDWDWHQ*ITTRIF 465
LQYA+DT+LF ++ +A +KL+LC FE SGL +NF+KS + C GD + T +F
Sbjct: 1045 LQYADDTILFMDHDLEKACNMKLLLCAFEQLSGLKINFHKSELFCFGDARAMEDQYTDLF 1104
Query: 464 GC 459
GC
Sbjct: 1105 GC 1106
>ref|XP_008650633.1| PREDICTED: uncharacterized protein LOC103631517 [Zea mays]
Length = 1324
Score = 68.2 bits (165), Expect(3) = 6e-21
Identities = 37/82 (45%), Positives = 51/82 (62%)
Frame = -1
Query: 342 KSLSLGGRLTLLNSVLSATPFYYLSYFLLPKWVIQRIDRIRRAFL*RGPGPMQRGYNLVA 163
K LS GGRL LLNSVLS+ P + +S+F +P V+++++ IR F +G G ++ Y L
Sbjct: 891 KFLSSGGRLVLLNSVLSSLPIFMMSFFEIPVGVLKKLNAIRSRFFWQG-GSSKKRYRLAK 949
Query: 162 WSKVCRSKKDGSLGVLNLQHMN 97
W VC+ K G LGV NL N
Sbjct: 950 WHIVCQPKALGGLGVSNLALKN 971
Score = 53.9 bits (128), Expect(3) = 6e-21
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Frame = -2
Query: 644 LQYANDTLLFGRCNIAEAVVIKLILCCFEVWSGLSVNFYKSFIICIG---DWDWHQ*ITT 474
LQYA+DT++F N+ A IKL+L FE SGL +NF+KS + C G ++D H +
Sbjct: 789 LQYADDTMVFLDHNLEHARNIKLLLTLFEQMSGLKINFHKSELFCYGSAKEYDLHY---S 845
Query: 473 RIFGCPVKTL 444
IFGC + ++
Sbjct: 846 LIFGCGIGSI 855
Score = 26.6 bits (57), Expect(3) = 6e-21
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 448 LSLQYLGITLGLGKLSKRDWFELIEKVEKKL 356
+ +YLGI + +L DW +I++ EK+L
Sbjct: 855 IPFKYLGIPMTHRRLRNSDWQGVIDRFEKRL 885
>gb|ABA93441.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1296
Score = 70.5 bits (171), Expect(3) = 8e-21
Identities = 35/83 (42%), Positives = 52/83 (62%)
Frame = -1
Query: 342 KSLSLGGRLTLLNSVLSATPFYYLSYFLLPKWVIQRIDRIRRAFL*RGPGPMQRGYNLVA 163
K +S+GGRL L+NSVLS+ + +S+F +PK V+Q+ID R F +G ++ Y L
Sbjct: 1194 KHMSVGGRLVLINSVLSSLAMFMISFFEIPKGVLQKIDYYRSRFFWQGDDHKKK-YRLTR 1252
Query: 162 WSKVCRSKKDGSLGVLNLQHMNR 94
W +C+ K G LGV NL+ N+
Sbjct: 1253 WDIICQPKDQGGLGVHNLEIQNK 1275
Score = 47.4 bits (111), Expect(3) = 8e-21
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Frame = -2
Query: 644 LQYANDTLLFGRCNIAEAVVIKLILCCFEVWSGLSVNFYKSFIICIGDWDWHQ*ITTRIF 465
LQYA++T++F ++ +A +KLIL FE SGL +NF+KS + C + IF
Sbjct: 1092 LQYADNTIIFLEHDLQQAKNLKLILSVFEKLSGLKINFHKSELFCFSQAKDCYDQYSSIF 1151
Query: 464 GC-----PVKTL 444
GC PVK L
Sbjct: 1152 GCKLGSFPVKYL 1163
Score = 30.4 bits (67), Expect(3) = 8e-21
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -3
Query: 442 LQYLGITLGLGKLSKRDWFELIEKVEKKL 356
++YLGI + KLS DW + +++E+KL
Sbjct: 1160 VKYLGIPMHFRKLSNNDWKVIEQRIERKL 1188
>gb|AAN05341.1| Putative non-LTR retroelement reverse transcriptase [Oryza sativa
Japonica Group]
Length = 603
Score = 69.3 bits (168), Expect(3) = 8e-21
Identities = 35/83 (42%), Positives = 51/83 (61%)
Frame = -1
Query: 342 KSLSLGGRLTLLNSVLSATPFYYLSYFLLPKWVIQRIDRIRRAFL*RGPGPMQRGYNLVA 163
K LS+GGRL L+NSVLS+ + LS+F +PK +++++D R F + G +R Y L
Sbjct: 235 KCLSVGGRLVLINSVLSSLAMFMLSFFEVPKGILKKLDYYRSRFFWQSDG-HKRKYRLAR 293
Query: 162 WSKVCRSKKDGSLGVLNLQHMNR 94
WS +C K G LG+ NL N+
Sbjct: 294 WSVICTPKDCGGLGIQNLNVQNK 316
Score = 51.2 bits (121), Expect(3) = 8e-21
Identities = 25/62 (40%), Positives = 38/62 (61%)
Frame = -2
Query: 644 LQYANDTLLFGRCNIAEAVVIKLILCCFEVWSGLSVNFYKSFIICIGDWDWHQ*ITTRIF 465
LQYA+DT+LF ++ E +KL+L FE +GL +NF+KS + C G + + +F
Sbjct: 133 LQYADDTILFMEHDLDEVKNLKLVLSTFEKLAGLKINFHKSELFCYGKSKFAENEYVMLF 192
Query: 464 GC 459
GC
Sbjct: 193 GC 194
Score = 27.7 bits (60), Expect(3) = 8e-21
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 439 QYLGITLGLGKLSKRDWFELIEKVEKKL 356
+YLGI + KLS +DW + E+ ++KL
Sbjct: 202 RYLGIPMHHKKLSNKDWQIIEERFQRKL 229
>gb|ABF94719.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 581
Score = 69.3 bits (168), Expect(3) = 8e-21
Identities = 35/83 (42%), Positives = 51/83 (61%)
Frame = -1
Query: 342 KSLSLGGRLTLLNSVLSATPFYYLSYFLLPKWVIQRIDRIRRAFL*RGPGPMQRGYNLVA 163
K LS+GGRL L+NSVLS+ + LS+F +PK +++++D R F + G +R Y L
Sbjct: 235 KCLSVGGRLVLINSVLSSLAMFMLSFFEVPKGILKKLDYYRSRFFWQSDG-HKRKYRLAR 293
Query: 162 WSKVCRSKKDGSLGVLNLQHMNR 94
WS +C K G LG+ NL N+
Sbjct: 294 WSVICTPKDCGGLGIQNLNVQNK 316
Score = 51.2 bits (121), Expect(3) = 8e-21
Identities = 25/62 (40%), Positives = 38/62 (61%)
Frame = -2
Query: 644 LQYANDTLLFGRCNIAEAVVIKLILCCFEVWSGLSVNFYKSFIICIGDWDWHQ*ITTRIF 465
LQYA+DT+LF ++ E +KL+L FE +GL +NF+KS + C G + + +F
Sbjct: 133 LQYADDTILFMEHDLDEVKNLKLVLSTFEKLAGLKINFHKSELFCYGKSKFAENEYVMLF 192
Query: 464 GC 459
GC
Sbjct: 193 GC 194
Score = 27.7 bits (60), Expect(3) = 8e-21
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 439 QYLGITLGLGKLSKRDWFELIEKVEKKL 356
+YLGI + KLS +DW + E+ ++KL
Sbjct: 202 RYLGIPMHHKKLSNKDWQIIEERFQRKL 229
>gb|ABA96523.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 1244
Score = 71.6 bits (174), Expect(3) = 1e-20
Identities = 39/83 (46%), Positives = 51/83 (61%)
Frame = -1
Query: 342 KSLSLGGRLTLLNSVLSATPFYYLSYFLLPKWVIQRIDRIRRAFL*RGPGPMQRGYNLVA 163
K+ S GGRL LLNSVLS+ P + LS+F +P+ V+QR+D R +F ++ Y L
Sbjct: 1079 KNNSYGGRLVLLNSVLSSLPMFMLSFFEIPRGVLQRLDYYRSSFF-WSSDSQKKKYILTK 1137
Query: 162 WSKVCRSKKDGSLGVLNLQHMNR 94
+CR K G LGVLNL MNR
Sbjct: 1138 CDYICRPKDQGGLGVLNLDIMNR 1160
Score = 52.8 bits (125), Expect(3) = 1e-20
Identities = 27/62 (43%), Positives = 38/62 (61%)
Frame = -2
Query: 644 LQYANDTLLFGRCNIAEAVVIKLILCCFEVWSGLSVNFYKSFIICIGDWDWHQ*ITTRIF 465
LQYA+DT++F + +A +K ILC FE SGL +NF+KS I C G + ++F
Sbjct: 977 LQYADDTIIFLEHDFEQAKNMKAILCVFEHLSGLKINFHKSKIFCFGGAKEMEDQYRQLF 1036
Query: 464 GC 459
GC
Sbjct: 1037 GC 1038
Score = 23.5 bits (49), Expect(3) = 1e-20
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 439 QYLGITLGLGKLSKRDWFELIEKVEKKL 356
+YLGI + KL DW + ++ ++KL
Sbjct: 1046 RYLGIPIHYRKLRNSDWKCVEDRFQRKL 1073
>ref|XP_009762742.1| PREDICTED: uncharacterized protein LOC104214731 [Nicotiana
sylvestris]
Length = 263
Score = 71.6 bits (174), Expect(3) = 4e-20
Identities = 38/76 (50%), Positives = 50/76 (65%)
Frame = -1
Query: 345 NKSLSLGGRLTLLNSVLSATPFYYLSYFLLPKWVIQRIDRIRRAFL*RGPGPMQRGYNLV 166
N LS+GGRLTL+NSVL P Y +S F +P V++RID +RR FL G ++ ++LV
Sbjct: 187 NHDLSMGGRLTLINSVLDVLPTYMMSLFPIPVNVVKRIDALRRNFLWEGNSEKKK-FHLV 245
Query: 165 AWSKVCRSKKDGSLGV 118
WS V SKK G LG+
Sbjct: 246 NWSSVTTSKKAGRLGI 261
Score = 47.0 bits (110), Expect(3) = 4e-20
Identities = 22/52 (42%), Positives = 35/52 (67%)
Frame = -2
Query: 656 QIINLQYANDTLLFGRCNIAEAVVIKLILCCFEVWSGLSVNFYKSFIICIGD 501
+I +LQYA+DTL+F + + V+++I FE SGL +N+YKSFI + +
Sbjct: 83 RISHLQYADDTLVFCEADREQLKVLRVIFILFEATSGLRINWYKSFIYPVNE 134
Score = 27.3 bits (59), Expect(3) = 4e-20
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 436 YLGITLGLGKLSKRDWFELIEKVEKKL 356
YLG+ G SK W ++EK EKKL
Sbjct: 156 YLGMPFGAKSKSKGIWNGVLEKCEKKL 182